Pregenerated sensors for CDX1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024619Ensembl transcript IDs: ENSMUST00000025521.9
Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CAAGAGCAGTGGCCAATTGCCCAGCCTCTACCTCATGTCCAGTCCTaGTGGCTTTGTAGCTCCAGGCTGGGGAGGGCCAGAGCATGGGGT | + |
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Preference number: 1 (lower is better) Translates to: QEQWPIAQPLPHVQS*WLCSSRLGRARAWG Trigger: ACCCCATGCTCTGGCCCTCCCCAGCCTGGAGCTACAAAGCCATCAGGACTGGACATGAGGTAGAGGCTGGGCAATTGGCCACTGCTCTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CCA 90 bp | AGCCTCTACCTCATGTCCAGTCCTGATGGCTTTGTAGCTCCAGGCTaGGGAGGGCCAGAGCATGGGGTGCTAGGGCAGGTGAAAGTGAGG | + |
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Preference number: 1 (lower is better) Translates to: SLYLMSSPDGFVAPG*GGPEHGVLGQVKVR Trigger: CCTCACTTTCACCTGCCCTAGCACCCCATGCTCTGGCCCTCCCCAGCCTGGAGCTACAAAGCCATCAGGACTGGACATGAGGTAGAGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CCA 90 bp | AGAGATTCCACTCTACATAAGCCCTGTACAGCTGCGAGTCCCCCATaGTCTGGGGGCTCCCTGGGTGTGATGGGCAGCCTGTGGGAAGGT | + |
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Preference number: 1 (lower is better) Translates to: RDSTLHKPCTAASPP*SGGSLGVMGSLWEG Trigger: ACCTTCCCACAGGCTGCCCATCACACCCAGGGAGCCCCCAGACCATGGGGGACTCGCAGCTGTACAGGGCTTATGTAGAGTGGAATCTCT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR TCA 90 bp | GACAGCTCGTTGAGCCCTCTGAATCTTGGGAAATCTCCAGGTGATTaGGACTTCTCATTGGGCTTCCCCATCACCCTGTGGCCTAGGACA | + |
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Preference number: 1 (lower is better) Translates to: DSSLSPLNLGKSPGD*DFSLGFPITLWPRT Trigger: TGTCCTAGGCCACAGGGTGATGGGGAAGCCCAATGAGAAGTCTCAATCACCTGGAGATTTCCCAAGATTCAGAGGGCTCAACGAGCTGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR-3UTR TCA 90 bp | TCCAGAGCCAGTCTGGTCCAGATACCAGCCTCCCACCTCACTCTGGAACCCTTGGCAGTTTGTCCACAGTaGCCCCAAAGGGCAGCAGCA | + |
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Preference number: 2 (lower is better) Translates to: SRASLVQIPASHLTLEPLAVCPQ*PQRAAA Trigger: TGCTGCTGCCCTTTGGGGTCACTGTGGACAAACTGC...CAAGGGTTCCAGAGTGAGGTGGGAGGCTGGTATCTGGACCAGACTGGCTCTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR-3UTR GCA 90 bp | GGCTGGAAGAGGAGACAGGTGGGGCAGATAGCATCCTTGTGCTTCACATGGGAGGGGCAGCAGCAGGGCTaGAACTCAGAACAGGTCCTT | + |
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Preference number: 2 (lower is better) Translates to: GWKRRQVGQIASLCFTWEGQQQG*NSEQVL Trigger: AAGGACCTGTTCTGAGTTGCAGCCCTGCTGCTGCCC...CTCCCATGTGAAGCACAAGGATGCTATCTGCCCCACCTGTCTCCTCTTCCAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR-3UTR GCA 90 bp | ACAAGAGCTGGAAGAGGTCCTTGTCCAACAGGCTCACCACACAGCCCAGCCAACCCCAGAAAAGCCAGCTaGCCAGCATTCAAGTCCCTA | + |
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Preference number: 2 (lower is better) Translates to: TRAGRGPCPTGSPHSPANPRKAS*PAFKSL Trigger: TAGGGACTTGAATGCTGGGCAGCTGGCTTTTCTGGG...GTTGGCTGGGCTGTGTGGTGAGCCTGTTGGACAAGGACCTCTTCCAGCTCTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CCA 72 bp | CTCATGTCCAGTCCTGATGGCTTTGTAGCTCCAGGCTaGGGAGGGCCAGAGCATGGGGTGCTAGGGCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: LMSSPDGFVAPG*GGPEHGVLGQV Trigger: CACCTGCCCTAGCACCCCATGCTCTGGCCCTCCCCAGCCTGGAGCTACAAAGCCATCAGGACTGGACATGAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CCA 72 bp | ACTCTACATAAGCCCTGTACAGCTGCGAGTCCCCCATaGTCTGGGGGCTCCCTGGGTGTGATGGGCAGCCTG | + |
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Preference number: 3 (lower is better) Translates to: TLHKPCTAASPP*SGGSLGVMGSL Trigger: CAGGCTGCCCATCACACCCAGGGAGCCCCCAGACCATGGGGGACTCGCAGCTGTACAGGGCTTATGTAGAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CCA 72 bp | TGGCTTTGTAGCTCCAGGCTGGGGAGGGCCAGAGCATaGGGTGCTAGGGCAGGTGAAAGTGAGGCTGGAAGA | + |
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Preference number: 3 (lower is better) Translates to: WLCSSRLGRARA*GARAGESEAGR Trigger: TCTTCCAGCCTCACTTTCACCTGCCCTAGCACCCCATGCTCTGGCCCTCCCCAGCCTGGAGCTACAAAGCCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CCA 72 bp | AGGGCAGCAGCAGGGCTGCAACTCAGAACAGGTCCTTaGGCCCCAGAAAAGCCAGCTGCCCAGCATTCAAGT | + |
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Preference number: 3 (lower is better) Translates to: RAAAGLQLRTGP*APEKPAAQHSS Trigger: ACTTGAATGCTGGGCAGCTGGCTTTTCTGGGGCCCAAGGACCTGTTCTGAGTTGCAGCCCTGCTGCTGCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CCA 72 bp | CCTTCTTTCAATGCCGCCTACTCTCCAGAGCCAGTCTaGTCCAGATACCAGCCTCCCACCTCACTCTGGAAC | + |
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Preference number: 3 (lower is better) Translates to: PSFNAAYSPEPV*SRYQPPTSLWN Trigger: GTTCCAGAGTGAGGTGGGAGGCTGGTATCTGGACCAGACTGGCTCTGGAGAGTAGGCGGCATTGAAAGAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR GCA 72 bp | TGGGAGTCTAGACTCTGGTGTACCACCTTCTTTCAATaGCGCCTACTCTCCAGAGCCAGTCTGGTCCAGATA | + |
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Preference number: 3 (lower is better) Translates to: WESRLWCTTFFQ*RLLSRASLVQI Trigger: TATCTGGACCAGACTGGCTCTGGAGAGTAGGCGGCATTGAAAGAAGGTGGTACACCAGAGTCTAGACTCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR TCA 72 bp | TTGAGCCCTCTGAATCTTGGGAAATCTCCAGGTGATTaGGACTTCTCATTGGGCTTCCCCATCACCCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: LSPLNLGKSPGD*DFSLGFPITLW Trigger: CCACAGGGTGATGGGGAAGCCCAATGAGAAGTCTCAATCACCTGGAGATTTCCCAAGATTCAGAGGGCTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CCA 90 bp | ACTCTCCAGAGCCAGTCTGGTCCAGATACCAGCCTCCCACCTCACTCTGGAACCTGGCGGCTGAGGCCGTaGGGCCCGGGCCATAGGCAG | + |
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Preference number: 4 (lower is better) Translates to: TLQSQSGPDTSLPPHSGTWRLRP*GPGHRQ Trigger: CTGCCTATGGCCCGGGCCCCACGGCCTCAGCCGCCA...GGTTCCAGAGTGAGGTGGGAGGCTGGTATCTGGACCAGACTGGCTCTGGAGAGT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CCA 90 bp | GCTGGAAGAGGTCCTTGTCCAACAGGCTCACCACACAGCCCAGCCAACGGAAGGGTAGGGCGTCCGCCTTaGCGCTCCTGGCGAGGACGG | + |
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Preference number: 4 (lower is better) Translates to: AGRGPCPTGSPHSPANGRVGRPP*RSWRGR Trigger: CCGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTAC...CCTTCCGTTGGCTGGGCTGTGTGGTGAGCCTGTTGGACAAGGACCTCTTCCAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CCA 90 bp | GCTGGAAGAGGTCCTTGTCCAACAGGCTCACCACACAGCCCAGCCAACGGAAGGCTGCCCAGTCGTCCTTaGGCGCAGGGAAGGGCGCAG | + |
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Preference number: 4 (lower is better) Translates to: AGRGPCPTGSPHSPANGRLPSRP*AQGRAQ Trigger: CTGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCAG...CCTTCCGTTGGCTGGGCTGTGTGGTGAGCCTGTTGGACAAGGACCTCTTCCAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR GCA 90 bp | ACTCTCCAGAGCCAGTCTGGTCCAGATACCAGCCTCCCACCTCACTCTGGAACCCGGGCCATAGGCAGCTaGCCAGTCGTCCTTGGGCGC | + |
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Preference number: 4 (lower is better) Translates to: TLQSQSGPDTSLPPHSGTRAIGS*PVVLGR Trigger: GCGCCCAAGGACGACTGGGCAGCTGCCTATGGCCCG...GGTTCCAGAGTGAGGTGGGAGGCTGGTATCTGGACCAGACTGGCTCTGGAGAGT 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR GCA 90 bp | GACCCCAAAGGGCAGCAGCAGGGCTGCAACTCAGAACAGGTCCTTGGGCCCCAGGTGGGAGGCAGGGGCTaGTGCTGCTGCTGTTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: DPKGQQQGCNSEQVLGPQVGGRG*CCCCFF Trigger: GAAGAAACAGCAGCAGCAGCAGCCCCTGCCTCCCAC...CTGGGGCCCAAGGACCTGTTCTGAGTTGCAGCCCTGCTGCTGCCCTTTGGGGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR GCA 90 bp | ACCACCTTCTTTCAATGCCGCCTACTCTCCAGAGCCAGTCTGGTCCAGATACCATCCTGGCGAGGACGGTaGGCCCGGAGCCCCGAGGGA | + |
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Preference number: 4 (lower is better) Translates to: TTFFQCRLLSRASLVQIPSWRGR*ARSPEG Trigger: TCCCTCGGGGCTCCGGGCGCACCGTCCTCGCCAGGA...TGGTATCTGGACCAGACTGGCTCTGGAGAGTAGGCGGCATTGAAAGAAGGTGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CCA 90 bp | AGCTGGAAGAGGTCCTTGTCCAACAGGCTCACCACACAGCCCAGCCAACGGAAGCTCCTTGACGGGCACTaGGGAGGGGGTGCCCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SWKRSLSNRLTTQPSQRKLLDGH*GGGAQK Trigger: CTTCTGGGCACCCCCTCCCCAGTGCCCGTCAAGGAG...CTTCCGTTGGCTGGGCTGTGTGGTGAGCCTGTTGGACAAGGACCTCTTCCAGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CCA 90 bp | ACCACCTTCTTTCAATGCCGCCTACTCTCCAGAGCCAGTCTGGTCCAGATACCACGAGGCTGGAGGGTCTaGCGGGGCCTGGGTACACGG | + |
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Preference number: 4 (lower is better) Translates to: TTFFQCRLLSRASLVQIPRGWRV*RGLGTR Trigger: CCGTGTACCCAGGCCCCGCCAGACCCTCCAGCCTCG...TGGTATCTGGACCAGACTGGCTCTGGAGAGTAGGCGGCATTGAAAGAAGGTGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CCA 90 bp | CCAGCCTCCCACCTCACTCTGGAACCCTTGGAGGAGACGGTGAAGCCTCAATCTGTGGCCCTGATGGTGTaGGAGTGCCATCCAGGGGCA | + |
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Preference number: 4 (lower is better) Translates to: PASHLTLEPLEETVKPQSVALMV*ECHPGA Trigger: TGCCCCTGGATGGCACTCCCACACCATCAGGGCCAC...AGATTGAGGCTTCACCGTCTCCTCCAAGGGTTCCAGAGTGAGGTGGGAGGCTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CAA 72 bp | GGAGGGGGCGAGTTCTGTCTCAAGAGCAGTGGCCAATaGCCCAGCCTCTACCTCATGTCCAGTCCTGATGGC | + |
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Preference number: 4 (lower is better) Translates to: GGGEFCLKSSGQ*PSLYLMSSPDG Trigger: GCCATCAGGACTGGACATGAGGTAGAGGCTGGGCAATTGGCCACTGCTCTTGAGACAGAACTCGCCCCCTCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CCA 90 bp | AGCTGGAAGAGGTCCTTGTCCAACAGGCTCACCACACAGCCCAGCCAACGGAAGCACGGTACTTGTCCTTaGTTCGGGTCTTACCGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SWKRSLSNRLTTQPSQRKHGTCP*FGSYRC Trigger: GCAGCGGTAAGACCCGAACCAAGGACAAGTACCGTG...CTTCCGTTGGCTGGGCTGTGTGGTGAGCCTGTTGGACAAGGACCTCTTCCAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CAA 72 bp | GTCCAGATACCAGCCTCCCACCTCACTCTGGAACCCTaGGAGGAGACGGTGAAGCCTCAATCTTGTCTTGAC | + |
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Preference number: 4 (lower is better) Translates to: VQIPASHLTLEP*EETVKPQSCLD Trigger: GTCAAGACAAGATTGAGGCTTCACCGTCTCCTCCAAGGGTTCCAGAGTGAGGTGGGAGGCTGGTATCTGGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| 3UTR CAA 72 bp | GGCTGGAAGAGGAGACAGGTGGGGCAGATAGCATCCTaGTGCTTCACATGGGAGTCTAGACTCTGGTGTACC | + |
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Preference number: 4 (lower is better) Translates to: GWKRRQVGQIAS*CFTWESRLWCT Trigger: GGTACACCAGAGTCTAGACTCCCATGTGAAGCACAAGGATGCTATCTGCCCCACCTGTCTCCTCTTCCAGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS GCA 90 bp | CATCCATTCGTAGGGCGTCCGCCTTGGCGCTCCTGGCGAGGACGGTaGGCCCGGAGCCCCGAGGGACTGCGCCAGGATGCCGGGACCAGG | + |
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Preference number: 5 (lower is better) Translates to: HPFVGRPPWRSWRGR*ARSPEGLRQDAGTR Trigger: CCTGGTCCCGGCATCCTGGCGCAGTCCCTCGGGGCTCCGGGCGCACCGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTACGAATGGATG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS CCA 90 bp | CACGCTGCGCCGCATCCATTCGTAGGGCGTCCGCCTTGGCGCTCCTaGCGAGGACGGTGCGCCCGGAGCCCCGAGGGACTGCGCCAGGAT | + |
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Preference number: 5 (lower is better) Translates to: HAAPHPFVGRPPWRS*RGRCARSPEGLRQD Trigger: ATCCTGGCGCAGTCCCTCGGGGCTCCGGGCGCACCGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTACGAATGGATGCGGCGCAGCGTG 73% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS GCA 90 bp | ACGGTACTTGTCCTTGGTTCGGGTCTTACCGCTGCCACCGCCGCCTaGAGCCGCCACGCTGCGCCGCATCCATTCGTAGGGCGTCCGCCT | + |
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Preference number: 5 (lower is better) Translates to: TVLVLGSGLTAATAA*SRHAAPHPFVGRPP Trigger: AGGCGGACGCCCTACGAATGGATGCGGCGCAGCGTGGCGGCTGCAGGCGGCGGTGGCAGCGGTAAGACCCGAACCAAGGACAAGTACCGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS CCA 90 bp | ATAGGTCGGAGGGCCCAGGCCGAGGCTGGAGGGTCTGGCGGGGCCTaGGTACACGGGGGAGTCCTTGTCCAGCACATAGCCCACGTACAT | + |
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Preference number: 5 (lower is better) Translates to: IGRRAQAEAGGSGGA*VHGGVLVQHIAHVH Trigger: ATGTACGTGGGCTATGTGCTGGACAAGGACTCCCCCGTGTACCCAGGCCCCGCCAGACCCTCCAGCCTCGGCCTGGGCCCTCCGACCTAT 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CAA 90 bp | GGGCCCCAGAAAAGCCAGCTGCCCAGCATTCAAGTCCCTAGATCCCTAGACCCCGCTGCCCAGTCGTCCTaGGGCGCAGGGAAGGGCGCA | + |
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Preference number: 5 (lower is better) Translates to: GPQKSQLPSIQVPRSLDPAAQSS*GAGKGA Trigger: TGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCAGC...GGGGTCTAGGGATCTAGGGACTTGAATGCTGGGCAGCTGGCTTTTCTGGGGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS GCA 90 bp | CTGTGTAGACCACACGGTACTTGTCCTTGGTTCGGGTCTTACCGCTaGCACCGCCGCCTGCAGCCGCCACGCTGCGCCGCATCCATTCGT | + |
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Preference number: 5 (lower is better) Translates to: LCRPHGTCPWFGSYR*HRRLQPPRCAASIR Trigger: ACGAATGGATGCGGCGCAGCGTGGCGGCTGCAGGCGGCGGTGGCAGCGGTAAGACCCGAACCAAGGACAAGTACCGTGTGGTCTACACAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CAA 90 bp | TGCAACTCAGAACAGGTCCTTGGGCCCCAGAAAAGCCAGCTGCCCAGCATTCAACGTAGGGCGTCCGCCTaGGCGCTCCTGGCGAGGACG | + |
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Preference number: 5 (lower is better) Translates to: CNSEQVLGPQKSQLPSIQRRASA*ALLART Trigger: CGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTACG...TTGAATGCTGGGCAGCTGGCTTTTCTGGGGCCCAAGGACCTGTTCTGAGTTGCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CAA 90 bp | CCCTGTACAGCTGCGAGTCCCCCATGGTCTGGGGGCTCCCTGGGTGTGATGGGCTTCTTCTTGTTTACTTaGCGCTCCTTGGCCCGGCGG | + |
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Preference number: 5 (lower is better) Translates to: PCTAASPPWSGGSLGVMGFFLFT*RSLARR Trigger: CCGCCGGGCCAAGGAGCGCAAAGTAAACAAGAAGAA...GCCCATCACACCCAGGGAGCCCCCAGACCATGGGGGACTCGCAGCTGTACAGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CAA 90 bp | AGGTCCTTGGGCCCCAGAAAAGCCAGCTGCCCAGCATTCAAGTCCCTAGATCCCACACGGTACTTGTCCTaGGTTCGGGTCTTACCGCTG | + |
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Preference number: 5 (lower is better) Translates to: RSLGPRKASCPAFKSLDPTRYLS*VRVLPL Trigger: CAGCGGTAAGACCCGAACCAAGGACAAGTACCGTGT...GGGATCTAGGGACTTGAATGCTGGGCAGCTGGCTTTTCTGGGGCCCAAGGACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CAA 90 bp | TGCAACTCAGAACAGGTCCTTGGGCCCCAGAAAAGCCAGCTGCCCAGCATTCAAGCAGCCAGCTCGGACTaGCGCCGGATAGTGATGTAC | + |
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Preference number: 5 (lower is better) Translates to: CNSEQVLGPQKSQLPSIQAASSD*RRIVMY Trigger: GTACATCACTATCCGGCGCAAGTCCGAGCTGGCTGC...TTGAATGCTGGGCAGCTGGCTTTTCTGGGGCCCAAGGACCTGTTCTGAGTTGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS-3UTR CAA 90 bp | CAGGAAGAGGGCAAGCTACTTGTCCTAGGTAGGCAGTTTGTCCACAGTGACCCCTGCTGCTGTTTCTTCTaGTTTACTTTGCGCTCCTTG | + |
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Preference number: 5 (lower is better) Translates to: QEEGKLLVLGRQFVHSDPCCCFF*FTLRSL Trigger: CAAGGAGCGCAAAGTAAACAAGAAGAAACAGCAGCA...GGGGTCACTGTGGACAAACTGCCTACCTAGGACAAGTAGCTTGCCCTCTTCCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS GCA 72 bp | GTAGGGCGTCCGCCTTGGCGCTCCTGGCGAGGACGGTaGGCCCGGAGCCCCGAGGGACTGCGCCAGGATGCC | + |
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Preference number: 6 (lower is better) Translates to: VGRPPWRSWRGR*ARSPEGLRQDA Trigger: GGCATCCTGGCGCAGTCCCTCGGGGCTCCGGGCGCACCGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTAC 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS CCA 72 bp | TGGGGCCCGGGCCATAGGCAGCTGCCCAGTCGTCCTTaGGCGCAGGGAAGGGCGCAGCCCAGGTCGGAGGGG | + |
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Preference number: 6 (lower is better) Translates to: WGPGHRQLPSRP*AQGRAQPRSEG Trigger: CCCCTCCGACCTGGGCTGCGCCCTTCCCTGCGCCCAAGGACGACTGGGCAGCTGCCTATGGCCCGGGCCCCA 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS CCA 72 bp | CCGCATCCATTCGTAGGGCGTCCGCCTTGGCGCTCCTaGCGAGGACGGTGCGCCCGGAGCCCCGAGGGACTG | + |
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Preference number: 6 (lower is better) Translates to: PHPFVGRPPWRS*RGRCARSPEGL Trigger: CAGTCCCTCGGGGCTCCGGGCGCACCGTCCTCGCCAGGAGCGCCAAGGCGGACGCCCTACGAATGGATGCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS GCA 72 bp | TCTTACCGCTGCCACCGCCGCCTGCAGCCGCCACGCTaGGCCGCATCCATTCGTAGGGCGTCCGCCTTGGCG | + |
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Preference number: 6 (lower is better) Translates to: SYRCHRRLQPPR*AASIRRASALA Trigger: CGCCAAGGCGGACGCCCTACGAATGGATGCGGCGCAGCGTGGCGGCTGCAGGCGGCGGTGGCAGCGGTAAGA 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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| CDS CCA 72 bp | GTTGGTGGTCTGTGTAGACCACACGGTACTTGTCCTTaGTTCGGGTCTTACCGCTGCCACCGCCGCCTGCAG | + |
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Preference number: 6 (lower is better) Translates to: VGGLCRPHGTCP*FGSYRCHRRLQ Trigger: CTGCAGGCGGCGGTGGCAGCGGTAAGACCCGAACCAAGGACAAGTACCGTGTGGTCTACACAGACCACCAAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025521.9 |
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