Pregenerated sensors for CDRT4 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000042200

Ensembl transcript IDs: ENSMUST00000035854.4

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	ATTCCCACGTGGGTAGCATGGTCTCTGACAGGGTCTCTTTCAGCATaGGTTCTGAGGGCTTGGACGGCTTCCTCCTCTTCAGCAGCACGG	+
Preference number: 5 (lower is better) Translates to: IPTWVAWSLTGSLSA*VLRAWTASSSSAAR Trigger: CCGTGCTGCTGAAGAGGAGGAAGCCGTCCAAGCCCTCAGAACTCATGCTGAAAGAGACCCTGTCAGAGACCATGCTACCCACGTGGGAAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 90 bp	TTCGGTGATTCGGGTTACTGCCGGGGAGATGTAAGCGACGTAGGCTaGCCACGGGTTGTGTTTTTCAAGCAGTATCAGAGGGAGTCCAAT	+
Preference number: 5 (lower is better) Translates to: FGDSGYCRGDVSDVG*PRVVFFKQYQRESN Trigger: ATTGGACTCCCTCTGATACTGCTTGAAAAACACAACCCGTGGCCAGCCTACGTCGCTTACATCTCCCCGGCAGTAACCCGAATCACCGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 90 bp	GGAGTTGTGCAGGTTCTGGGACAAATGTGGGACTCACATATATGGTaGAGCATTCCCACGTGGGTAGCATGGTCTCTGACAGGGTCTCTT	+
Preference number: 5 (lower is better) Translates to: GVVQVLGQMWDSHIW*SIPTWVAWSLTGSL Trigger: AAGAGACCCTGTCAGAGACCATGCTACCCACGTGGGAATGCTCCACCATATATGTGAGTCCCACATTTGTCCCAGAACCTGCACAACTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 90 bp	TTTGGAGTTGTGCAGGTTCTGGGACAAATGTGGGACTCACATATATaGTGGAGCATTCCCACGTGGGTAGCATGGTCTCTGACAGGGTCT	+
Preference number: 5 (lower is better) Translates to: FGVVQVLGQMWDSHI*WSIPTWVAWSLTGS Trigger: AGACCCTGTCAGAGACCATGCTACCCACGTGGGAATGCTCCACCATATATGTGAGTCCCACATTTGTCCCAGAACCTGCACAACTCCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 72 bp	TCGGGTTACTGCCGGGGAGATGTAAGCGACGTAGGCTaGCCACGGGTTGTGTTTTTCAAGCAGTATCAGAGG	+
Preference number: 6 (lower is better) Translates to: SGYCRGDVSDVG*PRVVFFKQYQR Trigger: CCTCTGATACTGCTTGAAAAACACAACCCGTGGCCAGCCTACGTCGCTTACATCTCCCCGGCAGTAACCCGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CAA 72 bp	TCTGACAGGGTCTCTTTCAGCATGAGTTCTGAGGGCTaGGACGGCTTCCTCCTCTTCAGCAGCACGGCACTA	+
Preference number: 6 (lower is better) Translates to: SDRVSFSMSSEG*DGFLLFSSTAL Trigger: TAGTGCCGTGCTGCTGAAGAGGAGGAAGCCGTCCAAGCCCTCAGAACTCATGCTGAAAGAGACCCTGTCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS TCA 72 bp	TGGGTAGCATGGTCTCTGACAGGGTCTCTTTCAGCATaGGTTCTGAGGGCTTGGACGGCTTCCTCCTCTTCA	+
Preference number: 6 (lower is better) Translates to: WVAWSLTGSLSA*VLRAWTASSSS Trigger: TGAAGAGGAGGAAGCCGTCCAAGCCCTCAGAACTCATGCTGAAAGAGACCCTGTCAGAGACCATGCTACCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 72 bp	GTGCAGGTTCTGGGACAAATGTGGGACTCACATATATaGTGGAGCATTCCCACGTGGGTAGCATGGTCTCTG	+
Preference number: 6 (lower is better) Translates to: VQVLGQMWDSHI*WSIPTWVAWSL Trigger: CAGAGACCATGCTACCCACGTGGGAATGCTCCACCATATATGTGAGTCCCACATTTGTCCCAGAACCTGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 72 bp	ATGTGGGACTCACATATATGGTGGAGCATTCCCACGTaGGTAGCATGGTCTCTGACAGGGTCTCTTTCAGCA	+
Preference number: 6 (lower is better) Translates to: MWDSHIWWSIPT*VAWSLTGSLSA Trigger: TGCTGAAAGAGACCCTGTCAGAGACCATGCTACCCACGTGGGAATGCTCCACCATATATGTGAGTCCCACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 72 bp	CAGGTTCTGGGACAAATGTGGGACTCACATATATGGTaGAGCATTCCCACGTGGGTAGCATGGTCTCTGACA	+
Preference number: 6 (lower is better) Translates to: QVLGQMWDSHIW*SIPTWVAWSLT Trigger: TGTCAGAGACCATGCTACCCACGTGGGAATGCTCCACCATATATGTGAGTCCCACATTTGTCCCAGAACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 72 bp	CATCCATTTGGAGTTGTGCAGGTTCTGGGACAAATGTaGGACTCACATATATGGTGGAGCATTCCCACGTGG	+
Preference number: 6 (lower is better) Translates to: HPFGVVQVLGQM*DSHIWWSIPTW Trigger: CCACGTGGGAATGCTCCACCATATATGTGAGTCCCACATTTGTCCCAGAACCTGCACAACTCCAAATGGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS CCA 72 bp	CCCCTCTCTGACATCCATTTGGAGTTGTGCAGGTTCTaGGACAAATGTGGGACTCACATATATGGTGGAGCA	+
Preference number: 6 (lower is better) Translates to: PLSDIHLELCRF*DKCGTHIYGGA Trigger: TGCTCCACCATATATGTGAGTCCCACATTTGTCCCAGAACCTGCACAACTCCAAATGGATGTCAGAGAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS TCA 72 bp	CGCAGGCCTCTTGGAGAAAATGATCTTGTTGTAGTTTaGTGTGGGCCCCTCTCTGACATCCATTTGGAGTTG	+
Preference number: 6 (lower is better) Translates to: RRPLGENDLVVV*CGPLSDIHLEL Trigger: CAACTCCAAATGGATGTCAGAGAGGGGCCCACATCAAACTACAACAAGATCATTTTCTCCAAGAGGCCTGCG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035854.4
CDS TCA 72 bp	TTTCAAGCAGTATCAGAGGGAGTCCAATGTTTTCCGTaGGTCTTGCTGAATAATTCCTGGGGTTCCACGTCT	+
Preference number: 6 (lower is better) Translates to: FQAVSEGVQCFP*VLLNNSWGSTS Trigger: AGACGTGGAACCCCAGGAATTATTCAGCAAGACTCACGGAAAACATTGGACTCCCTCTGATACTGCTTGAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035854.4

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