Pregenerated sensors for CDR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030878Ensembl transcript IDs: ENSMUST00000033169.9, ENSMUST00000140247.3
Found 119 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGGAGTCGACAGGAATCGCTGCAGGTCTGGGAAGGGTTAAGACCTaGGGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: RESTGIAAGLGRVKT*GEGSSLCLPSGQCR Trigger: TCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCCTTCCCAGACCTGCAGCGATTCCTGTCGACTCCCT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR CCA 90 bp | CAAAGTGTTGGCGGAGGTCATACAGCTCTTTCAGACAGGAGAAGCTaGGTGCTGGTTTCTCCTGGTCACATGCCTTCTGCCTCCCTCTTC | + |
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Preference number: 1 (lower is better) Translates to: QSVGGGHTALSDRRS*VLVSPGHMPSASLF Trigger: GAAGAGGGAGGCAGAAGGCATGTGACCAGGAGAAACCAGCACCCAGCTTCTCCTGTCTGAAAGAGCTGTATGACCTCCGCCAACACTTTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR TCA 90 bp | GGCTTTTCCTGGAAATCAGTGTACCAACCAGCGGCCAGTGTATCGTaGGATTTCCTAGGGACCTTGGAGTCAACATTCTCTGTCACCTCT | + |
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Preference number: 1 (lower is better) Translates to: GFSWKSVYQPAASVS*DFLGTLESTFSVTS Trigger: AGAGGTGACAGAGAATGTTGACTCCAAGGTCCCTAGGAAATCTCACGATACACTGGCCGCTGGTTGGTACACTGATTTCCAGGAAAAGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR TCA 90 bp | GCTCATTTTCTTCTTCATCAGGGCTCTGTTGGCTCTGCAAGGAAGTaGTCTTCTCAGCGAACACGTGGTCATACACAAAGTGTTGGCGGA | + |
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Preference number: 1 (lower is better) Translates to: AHFLLHQGSVGSARK*SSQRTRGHTQSVGG Trigger: TCCGCCAACACTTTGTGTATGACCACGTGTTCGCTGAGAAGATCACTTCCTTGCAGAGCCAACAGAGCCCTGATGAAGAAGAAAATGAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR CCA 90 bp | TCTTTACCCTACACTGTTAGGTACTTCAGCCTACTCCCAAGTACATaGCTCTCCCTCTACTGCTTCTGGGGCTTTTCCTGGAAATCAGTG | + |
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Preference number: 1 (lower is better) Translates to: SLPYTVRYFSLLPST*LSLYCFWGFSWKSV Trigger: CACTGATTTCCAGGAAAAGCCCCAGAAGCAGTAGAGGGAGAGCCATGTACTTGGGAGTAGGCTGAAGTACCTAACAGTGTAGGGTAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR GCA 90 bp | TTTCCTAGGGACCTTGGAGTCAACATTCTCTGTCACCTCTTTTCCTaGTTTTGCCAACTAAGCAAAGCAACGAGGCAGGTGTCATTAGCA | + |
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Preference number: 1 (lower is better) Translates to: FPRDLGVNILCHLFS*FCQLSKATRQVSLA Trigger: TGCTAATGACACCTGCCTCGTTGCTTTGCTTAGTTGGCAAAAGCAGGAAAAGAGGTGACAGAGAATGTTGACTCCAAGGTCCCTAGGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR-3UTR TCA 90 bp | ACATGCCTTCTGCCTCCCTCTTCCTTGGCTGGAAGACTTCAGCTCCTCCACTTGTCCTGTAACTGCTCCTaGTTGGTTGTGTACATCTGC | + |
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Preference number: 2 (lower is better) Translates to: TCLLPPSSLAGRLQLLHLSCNCS*LVVYIC Trigger: GCAGATGTACACAACCAATCAGGAGCAGTTACAGGA...CAAGTGGAGGAGCTGAAGTCTTCCAGCCAAGGAAGAGGGAGGCAGAAGGCATGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR GCA 90 bp | GAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGATCACACCTAGGAGAGTCAAGTGCTAGCAGATaGAATAAAACTTCAGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: EGSSLCLPSGQCRSHLGESSASR*NKTSGA Trigger: AGCCCCTGAAGTTTTATTGCATCTGCTAGCACTTGA...CTCTCCTAGGTGTGATCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR-3UTR CCA 90 bp | TGGTCATACACAAAGTGTTGGCGGAGGTCATACAGCTCTTTCAGACAGGAGAAGTGCCTCCCTCTTCCTTaGCTGGAAGACTTCAGCTCC | + |
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Preference number: 2 (lower is better) Translates to: WSYTKCWRRSYSSFRQEKCLPLP*LEDFSS Trigger: GGAGCTGAAGTCTTCCAGCCAAGGAAGAGGGAGGCA...CTTCTCCTGTCTGAAAGAGCTGTATGACCTCCGCCAACACTTTGTGTATGACCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR GCA 90 bp | TGGTCATACACAAAGTGTTGGCGGAGGTCATACAGCTCTTTCAGACAGGAGAAGTTTCTCCTGGTCACATaGCTTCTGCCTCCCTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: WSYTKCWRRSYSSFRQEKFLLVT*LLPPSS Trigger: GGAAGAGGGAGGCAGAAGGCATGTGACCAGGAGAAA...CTTCTCCTGTCTGAAAGAGCTGTATGACCTCCGCCAACACTTTGTGTATGACCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR CCA 90 bp | GAACACGTGGTCATACACAAAGTGTTGGCGGAGGTCATACAGCTCTTTCAGACATCCCTCTTCCTTGGCTaGAAGACTTCAGCTCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: EHVVIHKVLAEVIQLFQTSLFLG*KTSAPP Trigger: TGGAGGAGCTGAAGTCTTCCAGCCAAGGAAGAGGGA...TGTCTGAAAGAGCTGTATGACCTCCGCCAACACTTTGTGTATGACCACGTGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR CCA 90 bp | GTTTCTCCTGGTCACATGCCTTCTGCCTCCCTCTTCCTTGGCTGGAAGACTTCAGTAACTGCTCCTGATTaGTTGTGTACATCTGCTGAA | + |
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Preference number: 2 (lower is better) Translates to: VSPGHMPSASLFLGWKTSVTAPD*LCTSAE Trigger: TTCAGCAGATGTACACAACCAATCAGGAGCAGTTAC...TGAAGTCTTCCAGCCAAGGAAGAGGGAGGCAGAAGGCATGTGACCAGGAGAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR CCA 90 bp | TCATTTTCTTCTTCATCAGGGCTCTGTTGGCTCTGCAAGGAAGTGATCTTCTCATCAGACAGGAGAAGCTaGGTGCTGGTTTCTCCTGGT | + |
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Preference number: 2 (lower is better) Translates to: SFSSSSGLCWLCKEVIFSSDRRS*VLVSPG Trigger: ACCAGGAGAAACCAGCACCCAGCTTCTCCTGTCTGA...TGAGAAGATCACTTCCTTGCAGAGCCAACAGAGCCCTGATGAAGAAGAAAATGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR CAA 90 bp | CATTCAATTGTTTCTGTCAGGCTGAGGATTTTCTGCTGTGAGGCCTaGCTCTCAGCAACTAGCTTCTGGTTGGTTTCTTCCAGTTCTCTT | + |
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Preference number: 2 (lower is better) Translates to: HSIVSVRLRIFCCEA*LSATSFWLVSSSSL Trigger: AAGAGAACTGGAAGAAACCAACCAGAAGCTAGTTGCTGAGAGCAAGGCCTCACAGCAGAAAATCCTCAGCCTGACAGAAACAATTGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR CCA 90 bp | AGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTCAGAGCAACGTCAAGCTTTaGAGACTGCACTTACATGTC | + |
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Preference number: 2 (lower is better) Translates to: RICLSVSIQVLADAIKLQSNVKL*RLHLHV Trigger: GACATGTAAGTGCAGTCTCCAAAGCTTGACGTTGCT...CTGAAGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR-3UTR CCA 90 bp | TTAGCTGGGCCTGCAACATCGTCACTGCCTTTTTCAGGTGCTCATTTTCTTCTTTCAGCAACTAGCTTCTaGTTGGTTTCTTCCAGTTCT | + |
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Preference number: 2 (lower is better) Translates to: LAGPATSSLPFSGAHFLLSATSF*LVSSSS Trigger: AGAACTGGAAGAAACCAACCAGAAGCTAGTTGCTGA...AAGAAGAAAATGAGCACCTGAAAAAGGCAGTGACGATGTTGCAGGCCCAGCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR GCA 90 bp | GGCGTTAAGCCAAGACTTGCCATTTCAAATGGTATTAATTCGAATTTGGATATATGGCTCTCCCTCTACTaGTTCTGGGGCTTTTCCTGG | + |
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Preference number: 2 (lower is better) Translates to: GVKPRLAISNGINSNLDIWLSLY*FWGFSW Trigger: CCAGGAAAAGCCCCAGAAGCAGTAGAGGGAGAGCCA...TATATCCAAATTCGAATTAATACCATTTGAAATGGCAAGTCTTGGCTTAACGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR-3UTR GCA 90 bp | GGCGTTAAGCCAAGACTTGCCATTTCAAATGGTATTAATTCGAATTTGGATATATCAAGCTTTGGAGACTaGACTTACATGTCTGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: GVKPRLAISNGINSNLDISSFGD*TYMSEG Trigger: CCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTGA...TATATCCAAATTCGAATTAATACCATTTGAAATGGCAAGTCTTGGCTTAACGCC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR-3UTR GCA 90 bp | CCATTTCAAATGGTATTAATTCGAATTTGGATATATCAGGATCTGCCTGTCAGTCCAAGTAGTCTGAGATaGTATGAAAGCAACAGCCTT | + |
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Preference number: 2 (lower is better) Translates to: PFQMVLIRIWIYQDLPVSPSSLR*YESNSL Trigger: AAGGCTGTTGCTTTCATAGCATCTCAGACTACTTGG...ACTGACAGGCAGATCCTGATATATCCAAATTCGAATTAATACCATTTGAAATGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR TCA 72 bp | ACAGGAATCGCTGCAGGTCTGGGAAGGGTTAAGACCTaGGGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGC | + |
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Preference number: 3 (lower is better) Translates to: TGIAAGLGRVKT*GEGSSLCLPSG Trigger: GCCACTTGGCAGGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCCTTCCCAGACCTGCAGCGATTCCTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR-3UTR CAA 90 bp | AGGGCTCTGTTGGCTCTGCAAGGAAGTGATCTTCTCAGCGAACACGTGGTCATACTGCCTCCCTCTTCCTaGGCTGGAAGACTTCAGCTC | + |
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Preference number: 3 (lower is better) Translates to: RALLALQGSDLLSEHVVILPPSS*AGRLQL Trigger: GAGCTGAAGTCTTCCAGCCAAGGAAGAGGGAGGCAG...TATGACCACGTGTTCGCTGAGAAGATCACTTCCTTGCAGAGCCAACAGAGCCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR GCA 72 bp | GGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTaGAGATCACACCTAGGAGAGTTCTCTAGTTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: GEGSSLCLPSGQ*RSHLGEFSSFH Trigger: ATGGAAACTAGAGAACTCTCCTAGGTGTGATCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR CCA 72 bp | ACATGGCTCTCCCTCTACTGCTTCTGGGGCTTTTCCTaGAAATCAGTGTACCAACCAGCGGCCAGTGTATCG | + |
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Preference number: 3 (lower is better) Translates to: TWLSLYCFWGFS*KSVYQPAASVS Trigger: CGATACACTGGCCGCTGGTTGGTACACTGATTTCCAGGAAAAGCCCCAGAAGCAGTAGAGGGAGAGCCATGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR GCA 72 bp | AGGCAGGTGTCATTAGCAACGTCAAGCTTTGGAGACTaGACTTACATGTCTGAAGGGGAGGCAAGTGAGCGA | + |
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Preference number: 3 (lower is better) Translates to: RQVSLATSSFGD*TYMSEGEASER Trigger: TCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTGACGTTGCTAATGACACCTGCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR GCA 72 bp | GCATGCTGCTCATTCATTTGCCGTAGAAGCTCCACCTaGTTGGTCAGGTACTCGATTTCCTGTAACTGCTCC | + |
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Preference number: 3 (lower is better) Translates to: ACCSFICRRSST*LVRYSISCNCS Trigger: GGAGCAGTTACAGGAAATCGAGTACCTGACCAAGCAGGTGGAGCTTCTACGGCAAATGAATGAGCAGCATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR CCA 72 bp | TGGCTCTGCAAGGAAGTGATCTTCTCAGCGAACACGTaGTCATACACAAAGTGTTGGCGGAGGTCATACAGC | + |
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Preference number: 3 (lower is better) Translates to: WLCKEVIFSANT*SYTKCWRRSYS Trigger: GCTGTATGACCTCCGCCAACACTTTGTGTATGACCACGTGTTCGCTGAGAAGATCACTTCCTTGCAGAGCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR CAA 90 bp | AACACGTGGTCATACACAAAGTGTTGGCGGAGGTCATACAGCTCTTTCAGACAGTTCTGCTGTGAGGCCTaGCTCTCAGCAACTAGCTTC | + |
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Preference number: 3 (lower is better) Translates to: NTWSYTKCWRRSYSSFRQFCCEA*LSATSF Trigger: GAAGCTAGTTGCTGAGAGCAAGGCCTCACAGCAGAA...CTGTCTGAAAGAGCTGTATGACCTCCGCCAACACTTTGTGTATGACCACGTGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR TCA 72 bp | CTTCTTCATCAGGGCTCTGTTGGCTCTGCAAGGAAGTaGTCTTCTCAGCGAACACGTGGTCATACACAAAGT | + |
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Preference number: 3 (lower is better) Translates to: LLHQGSVGSARK*SSQRTRGHTQS Trigger: ACTTTGTGTATGACCACGTGTTCGCTGAGAAGATCACTTCCTTGCAGAGCCAACAGAGCCCTGATGAAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR GCA 72 bp | GACCTTGGAGTCAACATTCTCTGTCACCTCTTTTCCTaGTTTTGCCAACTAAGCAAAGCAACGAGGCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: DLGVNILCHLFS*FCQLSKATRQV Trigger: CACCTGCCTCGTTGCTTTGCTTAGTTGGCAAAAGCAGGAAAAGAGGTGACAGAGAATGTTGACTCCAAGGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR GCA 72 bp | TGCTCATTTTCTTCTTCATCAGGGCTCTGTTGGCTCTaGAAGGAAGTGATCTTCTCAGCGAACACGTGGTCA | + |
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Preference number: 3 (lower is better) Translates to: CSFSSSSGLCWL*KEVIFSANTWS Trigger: TGACCACGTGTTCGCTGAGAAGATCACTTCCTTGCAGAGCCAACAGAGCCCTGATGAAGAAGAAAATGAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR TCA 72 bp | CTGGAAGACTTCAGCTCCTCCACTTGGCTCTGCAGGTaGTCAATGTTGGTTTGCAGGCATTCAATTGTTTCT | + |
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Preference number: 3 (lower is better) Translates to: LEDFSSSTWLCR*SMLVCRHSIVS Trigger: AGAAACAATTGAATGCCTGCAAACCAACATTGATCACCTGCAGAGCCAAGTGGAGGAGCTGAAGTCTTCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR CAA 90 bp | AGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTCAGGATTTCCTAGGGACCTaGGAGTCAACATTCTCTGTC | + |
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Preference number: 3 (lower is better) Translates to: RICLSVSIQVLADAIKLQDFLGT*ESTFSV Trigger: GACAGAGAATGTTGACTCCAAGGTCCCTAGGAAATC...CTGAAGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR-3UTR CAA 90 bp | TGGTCATACACAAAGTGTTGGCGGAGGTCATACAGCTCTTTCAGACAGGAGAAGGTGATCAATGTTGGTTaGCAGGCATTCAATTGTTTC | + |
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Preference number: 3 (lower is better) Translates to: WSYTKCWRRSYSSFRQEKVINVG*QAFNCF Trigger: GAAACAATTGAATGCCTGCAAACCAACATTGATCAC...CTTCTCCTGTCTGAAAGAGCTGTATGACCTCCGCCAACACTTTGTGTATGACCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| 3UTR-3UTR CAA 90 bp | CCATTTCAAATGGTATTAATTCGAATTTGGATATATCAGGATCTGCCTGTCAGTCCTCTTTTCCTGCTTTaGCCAACTAAGCAAAGCAAC | + |
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Preference number: 3 (lower is better) Translates to: PFQMVLIRIWIYQDLPVSPLFLL*PTKQSN Trigger: GTTGCTTTGCTTAGTTGGCAAAAGCAGGAAAAGAGG...ACTGACAGGCAGATCCTGATATATCCAAATTCGAATTAATACCATTTGAAATGG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR TCA 90 bp | GAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGATCACACCTAGGAGAGCCGCCTCAGACTGCGTaGCCAGTCCTGTCAGGTCCC | + |
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Preference number: 4 (lower is better) Translates to: EGSSLCLPSGQCRSHLGEPPQTA*PVLSGP Trigger: GGGACCTGACAGGACTGGTCACGCAGTCTGAGGCGG...CTCTCCTAGGTGTGATCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | TCGCTGCAGGTCTGGGAAGGGTTAAGACCTGAGGGGAAGGAAGCAGCTTGTGCCTCTGTGGCCCCCAGCTaGTGCTCCAGCTCACTGTTC | + |
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Preference number: 4 (lower is better) Translates to: SLQVWEGLRPEGKEAACASVAPS*CSSSLF Trigger: GAACAGTGAGCTGGAGCAGCAGCTGGGGGCCACAGA...GGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCCTTCCCAGACCTGCAGCGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | GAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGATCACACCTAGGAGAGAGGGAGATGCCCCTCTaGTTCACAGCCTTAGCCCTC | + |
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Preference number: 4 (lower is better) Translates to: EGSSLCLPSGQCRSHLGEREMPL*FTALAL Trigger: GAGGGCTAAGGCTGTGAAGCAGAGGGGCATCTCCCT...CTCTCCTAGGTGTGATCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | GGGTTAAGACCTGAGGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAAGTGAGTCCTGCTCCTaGTGGCACTTCTTCAGTAGC | + |
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Preference number: 4 (lower is better) Translates to: GLRPEGKEAACACQVASASESCS*WHFFSS Trigger: GCTACTGAAGAAGTGCCAGCAGGAGCAGGACTCACT...TGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | GATCTTCTCAGCGAACACGTGGTCATACACAAAGTGTTGGCGGAGGTCATACAGACCGCACAGCAGCACTaGCCTCCCACCACCTGCAGC | + |
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Preference number: 4 (lower is better) Translates to: DLLSEHVVIHKVLAEVIQTAQQH*PPTTCS Trigger: GCTGCAGGTGGTGGGAGGGCAGTGCTGCTGTGCGGT...CTGTATGACCTCCGCCAACACTTTGTGTATGACCACGTGTTCGCTGAGAAGATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| CDS-3UTR CCA 90 bp | GGGTTAAGACCTGAGGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCATCAGACAGGAGAAGCTaGGTGCTGGTTTCTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: GLRPEGKEAACACQVASASDRRS*VLVSPG Trigger: ACCAGGAGAAACCAGCACCCAGCTTCTCCTGTCTGA...TGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | CAAGCTTTGGAGACTGCACTTACATGTCTGAAGGGGAGGCAAGTGAGCGAAAACCTGGGCTTACAGGGGTaGGTTCCCAGCCACTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: QALETALTCLKGRQVSENLGLQG*VPSHWP Trigger: GGGCCAGTGGCTGGGAACCCACCCCTGTAAGCCCAG...GTTTTCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR TCA 90 bp | GGGTTAAGACCTGAGGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAACTTGGCTCTGCAGGTaGTCAATGTTGGTTTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: GLRPEGKEAACACQVASATWLCR*SMLVCR Trigger: CCTGCAAACCAACATTGATCACCTGCAGAGCCAAGT...TGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | GAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGATCACACCTAGGAGAGTCCTCCAGCAGACTCTaGCTAGGCTCCTTGAAAGGA | + |
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Preference number: 4 (lower is better) Translates to: EGSSLCLPSGQCRSHLGESSSRL*LGSLKG Trigger: TCCTTTCAAGGAGCCTAGCCAGAGTCTGCTGGAGGA...CTCTCCTAGGTGTGATCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | ATGACATGCCTAGCTTTGAGTAAAACAGCTGAATGCTGGGCATACAAACAGGCGTGGGTTCCCAGCCACTaGCCCCCGCCTCAGACTGCG | + |
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Preference number: 4 (lower is better) Translates to: MTCLALSKTAECWAYKQAWVPSH*PPPQTA Trigger: CGCAGTCTGAGGCGGGGGCCAGTGGCTGGGAACCCA...CGCCTGTTTGTATGCCCAGCATTCAGCTGTTTTACTCAAAGCTAGGCATGTCAT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | GAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGATCACACCTAGGAGAGCCATTCACAAAAGGATaGTCTGCCTGCAGCATCTGC | + |
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Preference number: 4 (lower is better) Translates to: EGSSLCLPSGQCRSHLGEPFTKG*SACSIC Trigger: GCAGATGCTGCAGGCAGAGCATCCTTTTGTGAATGG...CTCTCCTAGGTGTGATCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | ACTAAGCAAAGCAACGAGGCAGGTGTCATTAGCAACGTCAAGCTTTGGAGACTGCTCGGTAGGCATCTGTaGCCCCCAGCTGCTGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: TKQSNEAGVISNVKLWRLLGRHL*PPAAAP Trigger: TGGAGCAGCAGCTGGGGGCCACAGATGCCTACCGAG...CAGTCTCCAAAGCTTGACGTTGCTAATGACACCTGCCTCGTTGCTTTGCTTAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR TCA 90 bp | TTTGGATATATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCACCCCTGCCAAACTGCTaGGCGCCGTCTCACTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: FGYIRICLSVSIQVLADAPLPNC*APSHCC Trigger: GCAGCAGTGAGACGGCGCTCAGCAGTTTGGCAGGGG...TGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATATATCCAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR TCA 90 bp | AAACTTTCGCATGCTGCTCATTCATTTGCCGTAGAAGCTCCACCTGCTTGGTCAAGACTCTGCGGACCATaGAAGGCGATGTGGGGCAGG | + |
|
Preference number: 4 (lower is better) Translates to: KLSHAAHSFAVEAPPAWSRLCGP*KAMWGR Trigger: CCTGCCCCACATCGCCTTTCATGGTCCGCAGAGTCT...TGACCAAGCAGGTGGAGCTTCTACGGCAAATGAATGAGCAGCATGCGAAAGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| CDS-3UTR CCA 90 bp | CAAGCTTTGGAGACTGCACTTACATGTCTGAAGGGGAGGCAAGTGAGCGAAAACAGCTGGAGATCTTGCTaGAGGTCCCGGTGGTCGTAC | + |
|
Preference number: 4 (lower is better) Translates to: QALETALTCLKGRQVSENSWRSC*RSRWSY Trigger: GTACGACCACCGGGACCTCCAGCAAGATCTCCAGCT...GTTTTCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | TCGCTGCAGGTCTGGGAAGGGTTAAGACCTGAGGGGAAGGAAGCAGCTTGTGCCTTCTCAGCGAACACGTaGTCATACACAAAGTGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: SLQVWEGLRPEGKEAACAFSANT*SYTKCW Trigger: CCAACACTTTGTGTATGACCACGTGTTCGCTGAGAA...GGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCCTTCCCAGACCTGCAGCGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | AAACTTTCGCATGCTGCTCATTCATTTGCCGTAGAAGCTCCACCTGCTTGGTCAAAGCTGGTCCACTCCTaGCCACCTCAGAGGTCCATC | + |
|
Preference number: 4 (lower is better) Translates to: KLSHAAHSFAVEAPPAWSKLVHS*PPQRSI Trigger: GATGGACCTCTGAGGTGGGCAGGAGTGGACCAGCTT...TGACCAAGCAGGTGGAGCTTCTACGGCAAATGAATGAGCAGCATGCGAAAGTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| CDS-3UTR CCA 90 bp | GAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGATCACACCTAGGAGAGCAACTAGCTTCTGGTTaGTTTCTTCCAGTTCTCTTG | + |
|
Preference number: 4 (lower is better) Translates to: EGSSLCLPSGQCRSHLGEQLASG*FLPVLL Trigger: CAAGAGAACTGGAAGAAACCAACCAGAAGCTAGTTG...CTCTCCTAGGTGTGATCTGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CCA 90 bp | ACTAAGCAAAGCAACGAGGCAGGTGTCATTAGCAACGTCAAGCTTTGGAGACTGTGCCTCCCTCTTCCTTaGCTGGAAGACTTCAGCTCC | + |
|
Preference number: 4 (lower is better) Translates to: TKQSNEAGVISNVKLWRLCLPLP*LEDFSS Trigger: GGAGCTGAAGTCTTCCAGCCAAGGAAGAGGGAGGCA...CAGTCTCCAAAGCTTGACGTTGCTAATGACACCTGCCTCGTTGCTTTGCTTAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR TCA 90 bp | TCAAGCTTTGGAGACTGCACTTACATGTCTGAAGGGGAGGCAAGTGAGCGAAAAGGCTCTGCAAGGAAGTaGTCTTCTCAGCGAACACGT | + |
|
Preference number: 4 (lower is better) Translates to: SSFGDCTYMSEGEASERKGSARK*SSQRTR Trigger: ACGTGTTCGCTGAGAAGATCACTTCCTTGCAGAGCC...TTTTCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | ATGACATGCCTAGCTTTGAGTAAAACAGCTGAATGCTGGGCATACAAACAGGCGTGGTCACATGCCTTCTaGCTCCCTCTTCCTTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: MTCLALSKTAECWAYKQAWSHAF*LPLPWL Trigger: CAGCCAAGGAAGAGGGAGGCAGAAGGCATGTGACCA...CGCCTGTTTGTATGCCCAGCATTCAGCTGTTTTACTCAAAGCTAGGCATGTCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR GCA 90 bp | TCAAGCTTTGGAGACTGCACTTACATGTCTGAAGGGGAGGCAAGTGAGCGAAAATTTCTCCTGGTCACATaGCTTCTGCCTCCCTCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: SSFGDCTYMSEGEASERKFLLVT*LLPPSS Trigger: GGAAGAGGGAGGCAGAAGGCATGTGACCAGGAGAAA...TTTTCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR GCA 90 bp | ACTAAGCAAAGCAACGAGGCAGGTGTCATTAGCAACGTCAAGCTTTGGAGACTGCACAAAAGGATGCTCTaGCTGCAGCATCTGCCGCAT | + |
|
Preference number: 4 (lower is better) Translates to: TKQSNEAGVISNVKLWRLHKRML*LQHLPH Trigger: ATGCGGCAGATGCTGCAGGCAGAGCATCCTTTTGTG...CAGTCTCCAAAGCTTGACGTTGCTAATGACACCTGCCTCGTTGCTTTGCTTAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CCA 90 bp | ACTAAGCAAAGCAACGAGGCAGGTGTCATTAGCAACGTCAAGCTTTGGAGACTGAGTTCAGCAGCAAGCTaGAGATCTTGCTGGAGGTCC | + |
|
Preference number: 4 (lower is better) Translates to: TKQSNEAGVISNVKLWRLSSAAS*RSCWRS Trigger: GGACCTCCAGCAAGATCTCCAGCTTGCTGCTGAACT...CAGTCTCCAAAGCTTGACGTTGCTAATGACACCTGCCTCGTTGCTTTGCTTAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR GCA 90 bp | ATGACATGCCTAGCTTTGAGTAAAACAGCTGAATGCTGGGCATACAAACAGGCGACAGGAGAAGCTGGGTaGTGGTTTCTCCTGGTCACA | + |
|
Preference number: 4 (lower is better) Translates to: MTCLALSKTAECWAYKQATGEAG*WFLLVT Trigger: TGTGACCAGGAGAAACCAGCACCCAGCTTCTCCTGT...CGCCTGTTTGTATGCCCAGCATTCAGCTGTTTTACTCAAAGCTAGGCATGTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR GCA 90 bp | CAAGCTTTGGAGACTGCACTTACATGTCTGAAGGGGAGGCAAGTGAGCGAAAACAGTAGTCTAGAGGTCTaGACAGCCTTGTGTGACAGT | + |
|
Preference number: 4 (lower is better) Translates to: QALETALTCLKGRQVSENSSLEV*TALCDS Trigger: ACTGTCACACAAGGCTGTGCAGACCTCTAGACTACT...GTTTTCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CCA 90 bp | ATGACATGCCTAGCTTTGAGTAAAACAGCTGAATGCTGGGCATACAAACAGGCGGAGTCCTGCTCCTGCTaGCACTTCTTCAGTAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: MTCLALSKTAECWAYKQAESCSC*HFFSSS Trigger: AGAGCTACTGAAGAAGTGCCAGCAGGAGCAGGACTC...CGCCTGTTTGTATGCCCAGCATTCAGCTGTTTTACTCAAAGCTAGGCATGTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR GCA 90 bp | ATGACATGCCTAGCTTTGAGTAAAACAGCTGAATGCTGGGCATACAAACAGGCGGAGTGGTTTTCTAGGTaGTTCTGGAGCAGCCAGGAA | + |
|
Preference number: 4 (lower is better) Translates to: MTCLALSKTAECWAYKQAEWFSR*FWSSQE Trigger: TTCCTGGCTGCTCCAGAAGCACCTAGAAAACCACTC...CGCCTGTTTGTATGCCCAGCATTCAGCTGTTTTACTCAAAGCTAGGCATGTCAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CCA 90 bp | CAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTCATCCCTCTTCCTTGGCTaGAAGACTTCAGCTCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: QDLPVSQHSSASRCNKTSSLFLG*KTSAPP Trigger: TGGAGGAGCTGAAGTCTTCCAGCCAAGGAAGAGGGA...TGAAGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR TCA 90 bp | TTTGGATATATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCATTCAGGGCACTGTACTaGGTGTCCACTTCATGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: FGYIRICLSVSIQVLADAFRALY*VSTSCR Trigger: TCTGCATGAAGTGGACACTCAGTACAGTGCCCTGAA...TGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATATATCCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR GCA 90 bp | CCATTTCAAATGGTATTAATTCGAATTTGGATATATCAGGATCTGCCTGTCAGTCATCTCAGCCACCTCTaGCTCCAACTCCAGGGCCCG | + |
|
Preference number: 4 (lower is better) Translates to: PFQMVLIRIWIYQDLPVSHLSHL*LQLQGP Trigger: CGGGCCCTGGAGTTGGAGGCAGAGGTGGCTGAGATG...ACTGACAGGCAGATCCTGATATATCCAAATTCGAATTAATACCATTTGAAATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR GCA 90 bp | TATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTAAAGGATGCTCTGCCTaGAGCATCTGCCGCATCTCA | + |
|
Preference number: 4 (lower is better) Translates to: YQDLPVSQHSSASRCNKTKGCSA*SICRIS Trigger: TGAGATGCGGCAGATGCTGCAGGCAGAGCATCCTTT...AGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CCA 90 bp | CCATTTCAAATGGTATTAATTCGAATTTGGATATATCAGGATCTGCCTGTCAGTTGCTGGAGGTCCCGGTaGTCGTACCACGGCTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: PFQMVLIRIWIYQDLPVSCWRSR*SYHGSS Trigger: GGATGAGCCGTGGTACGACCACCGGGACCTCCAGCA...ACTGACAGGCAGATCCTGATATATCCAAATTCGAATTAATACCATTTGAAATGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CCA 90 bp | AGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTCAGTCATCAGGGCTCTGTTaGCTCTGCAAGGAAGTGATC | + |
|
Preference number: 4 (lower is better) Translates to: RICLSVSIQVLADAIKLQSSGLC*LCKEVI Trigger: GATCACTTCCTTGCAGAGCCAACAGAGCCCTGATGA...CTGAAGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR TCA 90 bp | TATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTCCTGTAACTGCTCCTaGTTGGTTGTGTACATCTGC | + |
|
Preference number: 4 (lower is better) Translates to: YQDLPVSQHSSASRCNKTSCNCS*LVVYIC Trigger: GCAGATGTACACAACCAATCAGGAGCAGTTACAGGA...AGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | ATGACATGCCTAGCTTTGAGTAAAACAGCTGAATGCTGGGCATACAAACAGGCGGTAACTGCTCCTGATTaGTTGTGTACATCTGCTGAA | + |
|
Preference number: 4 (lower is better) Translates to: MTCLALSKTAECWAYKQAVTAPD*LCTSAE Trigger: TTCAGCAGATGTACACAACCAATCAGGAGCAGTTAC...CGCCTGTTTGTATGCCCAGCATTCAGCTGTTTTACTCAAAGCTAGGCATGTCAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | AATTCTGTTCTTTACCCTACACTGTTAGGTACTTCAGCCTACTCCCAAGTACATCTCTCTAGACTTAGCTaGGCCTGCAACATCGTCACT | + |
|
Preference number: 4 (lower is better) Translates to: NSVLYPTLLGTSAYSQVHLSRLS*ACNIVT Trigger: AGTGACGATGTTGCAGGCCCAGCTAAGTCTAGAGAG...ATGTACTTGGGAGTAGGCTGAAGTACCTAACAGTGTAGGGTAAAGAACAGAATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | TTTGGATATATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCATTTTCTAGGTGCTTCTaGAGCAGCCAGGAACATTTC | + |
|
Preference number: 4 (lower is better) Translates to: FGYIRICLSVSIQVLADAFSRCF*SSQEHF Trigger: GAAATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAA...TGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATATATCCAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR TCA 90 bp | TTTGGATATATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCACCAGTTCTCTTGCTGTaGCATCTAACTGCTCATAAA | + |
|
Preference number: 4 (lower is better) Translates to: FGYIRICLSVSIQVLADAPVLLL*HLTAHK Trigger: TTTATGAGCAGTTAGATGTCACAGCAAGAGAACTGG...TGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATATATCCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | TTTGGATATATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCATCAGCAACTAGCTTCTaGTTGGTTTCTTCCAGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: FGYIRICLSVSIQVLADASATSF*LVSSSS Trigger: AGAACTGGAAGAAACCAACCAGAAGCTAGTTGCTGA...TGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATATATCCAAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR GCA 90 bp | GGCGTTAAGCCAAGACTTGCCATTTCAAATGGTATTAATTCGAATTTGGATATATGTGACAGTGAGTCCTaGTCCTGCTGGCACTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: GVKPRLAISNGINSNLDICDSES*SCWHFF Trigger: GAAGAAGTGCCAGCAGGAGCAGGACTCACTGTCACA...TATATCCAAATTCGAATTAATACCATTTGAAATGGCAAGTCTTGGCTTAACGCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | TATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTGCAGGTGATCAATGTTaGTTTGCAGGCATTCAATTG | + |
|
Preference number: 4 (lower is better) Translates to: YQDLPVSQHSSASRCNKTAGDQC*FAGIQL Trigger: CAATTGAATGCCTGCAAACCAACATTGATCACCTGC...AGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | TTAATTCGAATTTGGATATATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTGCTGCTTCGTTTGAGTaGTTTTCTAGGTGCTTCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LIRIWIYQDLPVSQHSSAAASFE*FSRCFW Trigger: CCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGC...AGCACTTGAATGCTGACTGACAGGCAGATCCTGATATATCCAAATTCGAATTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CCA 90 bp | TTAATTCGAATTTGGATATATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTATGCAAGTGTCCTCATaGTCCTTCACGATGTCATCC | + |
|
Preference number: 4 (lower is better) Translates to: LIRIWIYQDLPVSQHSSAMQVSS*SFTMSS Trigger: GGATGACATCGTGAAGGACCATGAGGACACTTGCAT...AGCACTTGAATGCTGACTGACAGGCAGATCCTGATATATCCAAATTCGAATTAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| 3UTR CAA 72 bp | GAATGCTGGGCATACAAACAGGCGTTAAGCCAAGACTaGCCATTTCAAATGGTATTAATTCGAATTTGGATA | + |
|
Preference number: 4 (lower is better) Translates to: ECWAYKQALSQD*PFQMVLIRIWI Trigger: TATCCAAATTCGAATTAATACCATTTGAAATGGCAAGTCTTGGCTTAACGCCTGTTTGTATGCCCAGCATTC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 90 bp | AAAAGGATGCTCTGCCTGCAGCATCTGCCGCATCTCAGCCACCTCTaGCTCCAACTCCAGGGCCCGGGCTCGGTAGGCATCTGTGGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: KRMLCLQHLPHLSHL*LQLQGPGSVGICGP Trigger: GGGGCCACAGATGCCTACCGAGCCCGGGCCCTGGAGTTGGAGGCAGAGGTGGCTGAGATGCGGCAGATGCTGCAGGCAGAGCATCCTTTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 90 bp | AGAGATGGCGCGGGTACCGCACAGCAGCACTGCCCTCCCACCACCTaGAGCGGCTTTGCAGACTCTGCGGACCATGAAAGGCGATGTGGG | + |
|
Preference number: 5 (lower is better) Translates to: RDGAGTAQQHCPPTT*SGFADSADHERRCG Trigger: CCCACATCGCCTTTCATGGTCCGCAGAGTCTGCAAAGCCGCTGCAGGTGGTGGGAGGGCAGTGCTGCTGTGCGGTACCCGCGCCATCTCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| CDS-3UTR CAA 90 bp | GGGTTAAGACCTGAGGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCAGAGGTCTGCACAGCCTaGTGTGACAGTGAGTCCTGC | + |
|
Preference number: 5 (lower is better) Translates to: GLRPEGKEAACACQVASAEVCTA*CDSESC Trigger: GCAGGACTCACTGTCACACAAGGCTGTGCAGACCTC...TGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS GCA 90 bp | CCTCCTGATGCAAGTGTCCTCATGGTCCTTCACGATGTCATCCCCTaGCAAACTGCTGAGCGCCGTCTCACTGCTGCTTCGTTTGAGTGG | + |
|
Preference number: 5 (lower is better) Translates to: PPDASVLMVLHDVIP*QTAERRLTAASFEW Trigger: CCACTCAAACGAAGCAGCAGTGAGACGGCGCTCAGCAGTTTGGCAGGGGATGACATCGTGAAGGACCATGAGGACACTTGCATCAGGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 90 bp | TGCGTGACCAGTCCTGTCAGGTCCCTAGTCAGTAGTCTAGAGGTCTaGACAGCCTTGTGTGACAGTGAGTCCTGCTCCTGCTGGCACTTC | + |
|
Preference number: 5 (lower is better) Translates to: CVTSPVRSLVSSLEV*TALCDSESCSCWHF Trigger: GAAGTGCCAGCAGGAGCAGGACTCACTGTCACACAAGGCTGTGCAGACCTCTAGACTACTGACTAGGGACCTGACAGGACTGGTCACGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS GCA 90 bp | GCTGAGCGCCGTCTCACTGCTGCTTCGTTTGAGTGGTTTTCTAGGTaGTTCTGGAGCAGCCAGGAACATTTCCTCCAGCAGACTCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: AERRLTAASFEWFSR*FWSSQEHFLQQTLA Trigger: AGCCAGAGTCTGCTGGAGGAAATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGCAGTGAGACGGCGCTCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS CCA 90 bp | CTAGGTGCTTCTGGAGCAGCCAGGAACATTTCCTCCAGCAGACTCTaGCTAGGCTCCTTGAAAGGAACAAACAGAGAGTCGGGCACCAGC | + |
|
Preference number: 5 (lower is better) Translates to: LGASGAARNISSSRL*LGSLKGTNRESGTS Trigger: GCTGGTGCCCGACTCTCTGTTTGTTCCTTTCAAGGAGCCTAGCCAGAGTCTGCTGGAGGAAATGTTCCTGGCTGCTCCAGAAGCACCTAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS CCA 90 bp | CGCCGTCTCACTGCTGCTTCGTTTGAGTGGTTTTCTAGGTGCTTCTaGAGCAGCCAGGAACATTTCCTCCAGCAGACTCTGGCTAGGCTC | + |
|
Preference number: 5 (lower is better) Translates to: RRLTAASFEWFSRCF*SSQEHFLQQTLARL Trigger: GAGCCTAGCCAGAGTCTGCTGGAGGAAATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGCAGTGAGACGGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS CCA 90 bp | CCCTGCCAAACTGCTGAGCGCCGTCTCACTGCTGCTTCGTTTGAGTaGTTTTCTAGGTGCTTCTGGAGCAGCCAGGAACATTTCCTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: PCQTAERRLTAASFE*FSRCFWSSQEHFLQ Trigger: CTGGAGGAAATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGCAGTGAGACGGCGCTCAGCAGTTTGGCAGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CAA 90 bp | TCAAGCTTTGGAGACTGCACTTACATGTCTGAAGGGGAGGCAAGTGAGCGAAAAAGCAAGCTGGAGATCTaGCTGGAGGTCCCGGTGGTC | + |
|
Preference number: 5 (lower is better) Translates to: SSFGDCTYMSEGEASERKSKLEI*LEVPVV Trigger: GACCACCGGGACCTCCAGCAAGATCTCCAGCTTGCT...TTTTCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CAA 90 bp | TCAAGCTTTGGAGACTGCACTTACATGTCTGAAGGGGAGGCAAGTGAGCGAAAACTGCCTCCCTCTTCCTaGGCTGGAAGACTTCAGCTC | + |
|
Preference number: 5 (lower is better) Translates to: SSFGDCTYMSEGEASERKLPPSS*AGRLQL Trigger: GAGCTGAAGTCTTCCAGCCAAGGAAGAGGGAGGCAG...TTTTCGCTCACTTGCCTCCCCTTCAGACATGTAAGTGCAGTCTCCAAAGCTTGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS CCA 90 bp | TACTCTGCCTCCACGCTCACTCGCTTCTTCCTCTCTAGACTTAGCTaGGCCTGCAACATCGTCACTGCCTTTTTCAGGTGCTCATTTTCT | + |
|
Preference number: 5 (lower is better) Translates to: YSASTLTRFFLSRLS*ACNIVTAFFRCSFS Trigger: AGAAAATGAGCACCTGAAAAAGGCAGTGACGATGTTGCAGGCCCAGCTAAGTCTAGAGAGGAAGAAGCGAGTGAGCGTGGAGGCAGAGTA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS-3UTR CAA 90 bp | GGGTTAAGACCTGAGGGGAAGGAAGCAGCTTGTGCCTGCCAAGTGGCCAGTGCATCCTGCTTTGTTTTCTaGATGCAACTAAATATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: GLRPEGKEAACACQVASASCFVF*MQLNIS Trigger: GGAGATATTTAGTTGCATCAAGAAAACAAAGCAGGA...TGCACTGGCCACTTGGCAGGCACAAGCTGCTTCCTTCCCCTCAGGTCTTAACCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
||
| CDS TCA 90 bp | CACTTCTTCAGTAGCTCTTCATACTTCACTTTCAGGGCACTGTACTaGGTGTCCACTTCATGCAGAAGGGAGATGCCCCTCTGCTTCACA | + |
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Preference number: 5 (lower is better) Translates to: HFFSSSSYFTFRALY*VSTSCRREMPLCFT Trigger: TGTGAAGCAGAGGGGCATCTCCCTTCTGCATGAAGTGGACACTCAGTACAGTGCCCTGAAAGTGAAGTATGAAGAGCTACTGAAGAAGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CAA 90 bp | CAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTCATTCTGCTGTGAGGCCTaGCTCTCAGCAACTAGCTTC | + |
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Preference number: 5 (lower is better) Translates to: QDLPVSQHSSASRCNKTSFCCEA*LSATSF Trigger: GAAGCTAGTTGCTGAGAGCAAGGCCTCACAGCAGAA...TGAAGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CAA 90 bp | ACTAAGCAAAGCAACGAGGCAGGTGTCATTAGCAACGTCAAGCTTTGGAGACTGGCAACTAGCTTCTGGTaGGTTTCTTCCAGTTCTCTT | + |
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Preference number: 5 (lower is better) Translates to: TKQSNEAGVISNVKLWRLATSFW*VSSSSL Trigger: AAGAGAACTGGAAGAAACCAACCAGAAGCTAGTTGC...CAGTCTCCAAAGCTTGACGTTGCTAATGACACCTGCCTCGTTGCTTTGCTTAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CAA 90 bp | AGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTCAGCTCTGGCTAGGCTCCTaGAAAGGAACAAACAGAGAG | + |
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Preference number: 5 (lower is better) Translates to: RICLSVSIQVLADAIKLQLWLGS*KGTNRE Trigger: CTCTCTGTTTGTTCCTTTCAAGGAGCCTAGCCAGAG...CTGAAGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CAA 90 bp | TATCAGGATCTGCCTGTCAGTCAGCATTCAAGTGCTAGCAGATGCAATAAAACTTTCATCAGGGCTCTGTaGGCTCTGCAAGGAAGTGAT | + |
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Preference number: 5 (lower is better) Translates to: YQDLPVSQHSSASRCNKTFIRAL*ALQGSD Trigger: ATCACTTCCTTGCAGAGCCAACAGAGCCCTGATGAA...AGTTTTATTGCATCTGCTAGCACTTGAATGCTGACTGACAGGCAGATCCTGATA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CAA 90 bp | ACTAAGCAAAGCAACGAGGCAGGTGTCATTAGCAACGTCAAGCTTTGGAGACTGTCCTTAAATAGTGCTTaGTATTCTGGAGGTGTAGTG | + |
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Preference number: 5 (lower is better) Translates to: TKQSNEAGVISNVKLWRLSLNSA*YSGGVV Trigger: CACTACACCTCCAGAATACAAAGCACTATTTAAGGA...CAGTCTCCAAAGCTTGACGTTGCTAATGACACCTGCCTCGTTGCTTTGCTTAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CAA 90 bp | CCATTTCAAATGGTATTAATTCGAATTTGGATATATCAGGATCTGCCTGTCAGTGTCATACACAAAGTGTaGGCGGAGGTCATACAGCTC | + |
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Preference number: 5 (lower is better) Translates to: PFQMVLIRIWIYQDLPVSVIHKV*AEVIQL Trigger: GAGCTGTATGACCTCCGCCAACACTTTGTGTATGAC...ACTGACAGGCAGATCCTGATATATCCAAATTCGAATTAATACCATTTGAAATGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS-3UTR CAA 90 bp | AATTCTGTTCTTTACCCTACACTGTTAGGTACTTCAGCCTACTCCCAAGTACATGTGATCAATGTTGGTTaGCAGGCATTCAATTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: NSVLYPTLLGTSAYSQVHVINVG*QAFNCF Trigger: GAAACAATTGAATGCCTGCAAACCAACATTGATCAC...ATGTACTTGGGAGTAGGCTGAAGTACCTAACAGTGTAGGGTAAAGAACAGAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CAA 90 bp | CGGGTACCGCACAGCAGCACTGCCCTCCCACCACCTGCAGCGGCTTaGCAGACTCTGCGGACCATGAAAGGCGATGTGGGGCAGGCAGGG | + |
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Preference number: 6 (lower is better) Translates to: RVPHSSTALPPPAAA*QTLRTMKGDVGQAG Trigger: CCCTGCCTGCCCCACATCGCCTTTCATGGTCCGCAGAGTCTGCAAAGCCGCTGCAGGTGGTGGGAGGGCAGTGCTGCTGTGCGGTACCCG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| CDS GCA 72 bp | CTCTGCCTGCAGCATCTGCCGCATCTCAGCCACCTCTaGCTCCAACTCCAGGGCCCGGGCTCGGTAGGCATC | + |
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Preference number: 6 (lower is better) Translates to: LCLQHLPHLSHL*LQLQGPGSVGI Trigger: GATGCCTACCGAGCCCGGGCCCTGGAGTTGGAGGCAGAGGTGGCTGAGATGCGGCAGATGCTGCAGGCAGAG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 72 bp | GGGGTGGGTTCCCAGCCACTGGCCCCCGCCTCAGACTaGGTGACCAGTCCTGTCAGGTCCCTAGTCAGTAGT | + |
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Preference number: 6 (lower is better) Translates to: GVGSQPLAPASD*VTSPVRSLVSS Trigger: ACTACTGACTAGGGACCTGACAGGACTGGTCACGCAGTCTGAGGCGGGGGCCAGTGGCTGGGAACCCACCCC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 72 bp | GCGGGTACCGCACAGCAGCACTGCCCTCCCACCACCTaGAGCGGCTTTGCAGACTCTGCGGACCATGAAAGG | + |
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Preference number: 6 (lower is better) Translates to: AGTAQQHCPPTT*SGFADSADHER Trigger: CCTTTCATGGTCCGCAGAGTCTGCAAAGCCGCTGCAGGTGGTGGGAGGGCAGTGCTGCTGTGCGGTACCCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| CDS CAA 72 bp | CACAGCAGCACTGCCCTCCCACCACCTGCAGCGGCTTaGCAGACTCTGCGGACCATGAAAGGCGATGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: HSSTALPPPAAA*QTLRTMKGDVG Trigger: CCCCACATCGCCTTTCATGGTCCGCAGAGTCTGCAAAGCCGCTGCAGGTGGTGGGAGGGCAGTGCTGCTGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140247.3 |
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| CDS CCA 72 bp | TTCTGGAGGTGTAGTGGTGGGGGAACTGATGGACTCTaGGCTTACAGGGGTGGGTTCCCAGCCACTGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: FWRCSGGGTDGL*AYRGGFPATGP Trigger: GGGGCCAGTGGCTGGGAACCCACCCCTGTAAGCCCAGAGTCCATCAGTTCCCCCACCACTACACCTCCAGAA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 72 bp | TCGGGCACCAGCTTCTCCACACCATTCACAAAAGGATaGTCTGCCTGCAGCATCTGCCGCATCTCAGCCACC | + |
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Preference number: 6 (lower is better) Translates to: SGTSFSTPFTKG*SACSICRISAT Trigger: GGTGGCTGAGATGCGGCAGATGCTGCAGGCAGAGCATCCTTTTGTGAATGGTGTGGAGAAGCTGGTGCCCGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 72 bp | GCAAGTGTCCTCATGGTCCTTCACGATGTCATCCCCTaGCAAACTGCTGAGCGCCGTCTCACTGCTGCTTCG | + |
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Preference number: 6 (lower is better) Translates to: ASVLMVLHDVIP*QTAERRLTAAS Trigger: CGAAGCAGCAGTGAGACGGCGCTCAGCAGTTTGGCAGGGGATGACATCGTGAAGGACCATGAGGACACTTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 72 bp | AGCTTCTCCACACCATTCACAAAAGGATGCTCTGCCTaGAGCATCTGCCGCATCTCAGCCACCTCTGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SFSTPFTKGCSA*SICRISATSAS Trigger: GGAGGCAGAGGTGGCTGAGATGCGGCAGATGCTGCAGGCAGAGCATCCTTTTGTGAATGGTGTGGAGAAGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CAA 72 bp | GCCAAACTGCTGAGCGCCGTCTCACTGCTGCTTCGTTaGAGTGGTTTTCTAGGTGCTTCTGGAGCAGCCAGG | + |
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Preference number: 6 (lower is better) Translates to: AKLLSAVSLLLR*SGFLGASGAAR Trigger: CCTGGCTGCTCCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGCAGTGAGACGGCGCTCAGCAGTTTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 72 bp | AGTCCTGTCAGGTCCCTAGTCAGTAGTCTAGAGGTCTaGACAGCCTTGTGTGACAGTGAGTCCTGCTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: SPVRSLVSSLEV*TALCDSESCSC Trigger: GCAGGAGCAGGACTCACTGTCACACAAGGCTGTGCAGACCTCTAGACTACTGACTAGGGACCTGACAGGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CAA 90 bp | TCATCCCCTGCCAAACTGCTGAGCGCCGTCTCACTGCTGCTTCGTTaGAGTGGTTTTCTAGGTGCTTCTGGAGCAGCCAGGAACATTTCC | + |
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Preference number: 6 (lower is better) Translates to: SSPAKLLSAVSLLLR*SGFLGASGAARNIS Trigger: GGAAATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGCAGTGAGACGGCGCTCAGCAGTTTGGCAGGGGATGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CCA 72 bp | TCCACGCTCACTCGCTTCTTCCTCTCTAGACTTAGCTaGGCCTGCAACATCGTCACTGCCTTTTTCAGGTGC | + |
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Preference number: 6 (lower is better) Translates to: STLTRFFLSRLS*ACNIVTAFFRC Trigger: GCACCTGAAAAAGGCAGTGACGATGTTGCAGGCCCAGCTAAGTCTAGAGAGGAAGAAGCGAGTGAGCGTGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CCA 72 bp | ACTGCTGAGCGCCGTCTCACTGCTGCTTCGTTTGAGTaGTTTTCTAGGTGCTTCTGGAGCAGCCAGGAACAT | + |
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Preference number: 6 (lower is better) Translates to: TAERRLTAASFE*FSRCFWSSQEH Trigger: ATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGCAGTGAGACGGCGCTCAGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CCA 72 bp | TCTGGAGCAGCCAGGAACATTTCCTCCAGCAGACTCTaGCTAGGCTCCTTGAAAGGAACAAACAGAGAGTCG | + |
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Preference number: 6 (lower is better) Translates to: SGAARNISSSRL*LGSLKGTNRES Trigger: CGACTCTCTGTTTGTTCCTTTCAAGGAGCCTAGCCAGAGTCTGCTGGAGGAAATGTTCCTGGCTGCTCCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CCA 72 bp | ACTGCTGCTTCGTTTGAGTGGTTTTCTAGGTGCTTCTaGAGCAGCCAGGAACATTTCCTCCAGCAGACTCTG | + |
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Preference number: 6 (lower is better) Translates to: TAASFEWFSRCF*SSQEHFLQQTL Trigger: CAGAGTCTGCTGGAGGAAATGTTCCTGGCTGCTCCAGAAGCACCTAGAAAACCACTCAAACGAAGCAGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS TCA 72 bp | AGTAGCTCTTCATACTTCACTTTCAGGGCACTGTACTaGGTGTCCACTTCATGCAGAAGGGAGATGCCCCTC | + |
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Preference number: 6 (lower is better) Translates to: SSSSYFTFRALY*VSTSCRREMPL Trigger: GAGGGGCATCTCCCTTCTGCATGAAGTGGACACTCAGTACAGTGCCCTGAAAGTGAAGTATGAAGAGCTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS GCA 72 bp | CTCACTCGCTTCTTCCTCTCTAGACTTAGCTGGGCCTaGAACATCGTCACTGCCTTTTTCAGGTGCTCATTT | + |
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Preference number: 6 (lower is better) Translates to: LTRFFLSRLSWA*NIVTAFFRCSF Trigger: AAATGAGCACCTGAAAAAGGCAGTGACGATGTTGCAGGCCCAGCTAAGTCTAGAGAGGAAGAAGCGAGTGAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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| CDS CAA 90 bp | TGCTTTGTTTTCTTGATGCAACTAAATATCTCCTTAAATAGTGCTTaGTATTCTGGAGGTGTAGTGGTGGGGGAACTGATGGACTCTGGG | + |
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Preference number: 6 (lower is better) Translates to: CFVFLMQLNISLNSA*YSGGVVVGELMDSG Trigger: CCCAGAGTCCATCAGTTCCCCCACCACTACACCTCCAGAATACAAAGCACTATTTAAGGAGATATTTAGTTGCATCAAGAAAACAAAGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033169.9 |
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