Pregenerated sensors for CDO1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033022Ensembl transcript IDs: ENSMUST00000035804.9, ENSMUST00000234064.2, ENSMUST00000234179.2, ENSMUST00000234222.2, ENSMUST00000234819.2
Found 57 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTGGTCAAAGGCGTGGCATGTATCGAAGGGTGGACTGTACAAGTaGAGGCTCACGGCAGGCTCTGTGTGGCTGACGTTCTCTACTCGG | + |
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Preference number: 1 (lower is better) Translates to: LWSKAWHVSKGGLYK*RLTAGSVWLTFSTR Trigger: CCGAGTAGAGAACGTCAGCCACACAGAGCCTGCCGTGAGCCTCCACTTGTACAGTCCACCCTTCGATACATGCCACGCCTTTGACCAGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR CCA 90 bp | TTTATGCCCTGTTCTCTGGTCAAAGGCGTGGCATGTATCGAAGGGTaGACTGTACAAGTGGAGGCTCACGGCAGGCTCTGTGTGGCTGAC | + |
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Preference number: 1 (lower is better) Translates to: FMPCSLVKGVACIEG*TVQVEAHGRLCVAD Trigger: GTCAGCCACACAGAGCCTGCCGTGAGCCTCCACTTGTACAGTCCACCCTTCGATACATGCCACGCCTTTGACCAGAGAACAGGGCATAAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR GCA 90 bp | TTTTTGTTTGCGGGAGGTCTGGGTTCACGCACATCTCTAACCCCCTaGTGGTCACTACCAAGCACCAAACTGCTCTATGCGTCCCTAGTC | + |
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Preference number: 1 (lower is better) Translates to: FLFAGGLGSRTSLTP*WSLPSTKLLYASLV Trigger: GACTAGGGACGCATAGAGCAGTTTGGTGCTTGGTAGTGACCAGCAGGGGGTTAGAGATGTGCGTGAACCCAGACCTCCCGCAAACAAAAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| 3UTR CCA 90 bp | GTCATGGTGACTTTGTTTTTATGCCCTGTTCTCTGGTCAAAGGCGTaGCATGTATCGAAGGGTGGACTGTACAAGTGGAGGCTCACGGCA | + |
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Preference number: 1 (lower is better) Translates to: VMVTLFLCPVLWSKA*HVSKGGLYKWRLTA Trigger: TGCCGTGAGCCTCCACTTGTACAGTCCACCCTTCGATACATGCCACGCCTTTGACCAGAGAACAGGGCATAAAAACAAAGTCACCATGAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR GCA 90 bp | ATCTCTAACCCCCTGCTGGTCACTACCAAGCACCAAACTGCTCTATaGGTCCCTAGTCTCCACAGCATAGGAATTTGTCAAATAGGGTTG | + |
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Preference number: 1 (lower is better) Translates to: ISNPLLVTTKHQTAL*VPSLHSIGICQIGL Trigger: CAACCCTATTTGACAAATTCCTATGCTGTGGAGACTAGGGACGCATAGAGCAGTTTGGTGCTTGGTAGTGACCAGCAGGGGGTTAGAGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| 3UTR GCA 90 bp | CTGATTCCAAACTTGCTGTGGAATGTCATGGTGACTTTGTTTTTATaGCCTGTTCTCTGGTCAAAGGCGTGGCATGTATCGAAGGGTGGA | + |
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Preference number: 1 (lower is better) Translates to: LIPNLLWNVMVTLFL*PVLWSKAWHVSKGG Trigger: TCCACCCTTCGATACATGCCACGCCTTTGACCAGAGAACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTTTGGAATCAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR CCA 90 bp | AGTGACCCTGAAGTTGTAAATGGAGTCCTGATTCCAAACTTGCTGTaGAATGTCATGGTGACTTTGTTTTTATGCCCTGTTCTCTGGTCA | + |
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Preference number: 1 (lower is better) Translates to: SDPEVVNGVLIPNLL*NVMVTLFLCPVLWS Trigger: TGACCAGAGAACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTTTGGAATCAGGACTCCATTTACAACTTCAGGGTCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR-3UTR CCA 90 bp | ACCAGAAGCCCAAGTAGAGTTTCCATGGACAACCTCTCCCCCACCCCCAATAGAACAGCAAATGGTGGGTaGCCTCTCTGTCCAAGGGAA | + |
|
Preference number: 2 (lower is better) Translates to: TRSPSRVSMDNLSPTPNRTANGG*PLCPRE Trigger: TTCCCTTGGACAGAGAGGCCACCCACCATTTGCTGT...TCTATTGGGGGTGGGGGAGAGGTTGTCCATGGAAACTCTACTTGGGCTTCTGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| 3UTR-3UTR CCA 90 bp | TCCAAACTTGCTGTGGAATGTCATGGTGACTTTGTTTTTATGCCCTGTTCTCTGGGTGGACTGTACAAGTaGAGGCTCACGGCAGGCTCT | + |
|
Preference number: 2 (lower is better) Translates to: SKLAVECHGDFVFMPCSLGGLYK*RLTAGS Trigger: AGAGCCTGCCGTGAGCCTCCACTTGTACAGTCCACC...CAGAGAACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTTTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR CAA 90 bp | AATGGAGTCCTGATTCCAAACTTGCTGTGGAATGTCATGGTGACTTaGTTTTTATGCCCTGTTCTCTGGTCAAAGGCGTGGCATGTATCG | + |
|
Preference number: 2 (lower is better) Translates to: NGVLIPNLLWNVMVT*FLCPVLWSKAWHVS Trigger: CGATACATGCCACGCCTTTGACCAGAGAACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTTTGGAATCAGGACTCCATT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR GCA 72 bp | GCGGGAGGTCTGGGTTCACGCACATCTCTAACCCCCTaGTGGTCACTACCAAGCACCAAACTGCTCTATGCG | + |
|
Preference number: 3 (lower is better) Translates to: AGGLGSRTSLTP*WSLPSTKLLYA Trigger: CGCATAGAGCAGTTTGGTGCTTGGTAGTGACCAGCAGGGGGTTAGAGATGTGCGTGAACCCAGACCTCCCGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| 3UTR CCA 72 bp | GGACTGTACAAGTGGAGGCTCACGGCAGGCTCTGTGTaGCTGACGTTCTCTACTCGGTGTAAGCCAATGGAA | + |
|
Preference number: 3 (lower is better) Translates to: GLYKWRLTAGSV*LTFSTRCKPME Trigger: TTCCATTGGCTTACACCGAGTAGAGAACGTCAGCCACACAGAGCCTGCCGTGAGCCTCCACTTGTACAGTCC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR CCA 72 bp | TGTTCTCTGGTCAAAGGCGTGGCATGTATCGAAGGGTaGACTGTACAAGTGGAGGCTCACGGCAGGCTCTGT | + |
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Preference number: 3 (lower is better) Translates to: CSLVKGVACIEG*TVQVEAHGRLC Trigger: ACAGAGCCTGCCGTGAGCCTCCACTTGTACAGTCCACCCTTCGATACATGCCACGCCTTTGACCAGAGAACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR GCA 72 bp | CCCCTGCTGGTCACTACCAAGCACCAAACTGCTCTATaGGTCCCTAGTCTCCACAGCATAGGAATTTGTCAA | + |
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Preference number: 3 (lower is better) Translates to: PLLVTTKHQTAL*VPSLHSIGICQ Trigger: TTGACAAATTCCTATGCTGTGGAGACTAGGGACGCATAGAGCAGTTTGGTGCTTGGTAGTGACCAGCAGGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| 3UTR GCA 72 bp | AACTTGCTGTGGAATGTCATGGTGACTTTGTTTTTATaGCCTGTTCTCTGGTCAAAGGCGTGGCATGTATCG | + |
|
Preference number: 3 (lower is better) Translates to: NLLWNVMVTLFL*PVLWSKAWHVS Trigger: CGATACATGCCACGCCTTTGACCAGAGAACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR CCA 72 bp | AAATCCAGTTTTATTAAAGTTGTTTGGCAATTTTGGTaGCAGCTCAAGGTGGTGGCACACATTACACACGAG | + |
|
Preference number: 3 (lower is better) Translates to: KSSFIKVVWQFW*QLKVVAHITHE Trigger: CTCGTGTGTAATGTGTGCCACCACCTTGAGCTGCCACCAAAATTGCCAAACAACTTTAATAAAACTGGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| 3UTR CCA 72 bp | GAAGTTGTAAATGGAGTCCTGATTCCAAACTTGCTGTaGAATGTCATGGTGACTTTGTTTTTATGCCCTGTT | + |
|
Preference number: 3 (lower is better) Translates to: EVVNGVLIPNLL*NVMVTLFLCPV Trigger: AACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTTTGGAATCAGGACTCCATTTACAACTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| 3UTR GCA 72 bp | AATCAAGTGACTTTTTCTTTAGTAGGATTTTCCACCTaGATAGCTCAGGGTATTGTTTGCTTCCTTAGGACA | + |
|
Preference number: 3 (lower is better) Translates to: NQVTFSLVGFST*IAQGIVCFLRT Trigger: TGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGAAAATCCTACTAAAGAAAAAGTCACTTGATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR GCA 90 bp | GGTGGGTGGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACGCTTCCAGTACAGCCTaGACCTCCTCCACGTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: GGWPLCPRENIQRIRKRNASSTA*TSSTLT Trigger: AGTCAACGTGGAGGAGGTGCAGGCTGTACTGGAAGC...GTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCCACCCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR CCA 90 bp | TCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACCCTTTGCAGGGTGGACTGTACAAGTaGAGGCTCACGGCAGGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: STCIAQGIVCFLRTHPLQGGLYK*RLTAGS Trigger: AGAGCCTGCCGTGAGCCTCCACTTGTACAGTCCACC...CTGCAAAGGGTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR GCA 90 bp | GCAGGCTCTGTGTGGCTGACGTTCTCTACTCGGTGTAAGCCAATGGAATCATTAGCTTCCAGTACAGCCTaGACCTCCTCCACGTTGACT | + |
|
Preference number: 4 (lower is better) Translates to: AGSVWLTFSTRCKPMESLASSTA*TSSTLT Trigger: AGTCAACGTGGAGGAGGTGCAGGCTGTACTGGAAGC...TAATGATTCCATTGGCTTACACCGAGTAGAGAACGTCAGCCACACAGAGCCTGC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234222.2 |
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| CDS-3UTR CCA 90 bp | GGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAGACGGCAGGCTCTGTGTaGCTGACGTTCTCTACTCGG | + |
|
Preference number: 4 (lower is better) Translates to: GLSVQGKTFRGSESETSKTAGSV*LTFSTR Trigger: CCGAGTAGAGAACGTCAGCCACACAGAGCCTGCCGT...CTTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR GCA 90 bp | TGGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAACCCACTCGGCGGGATTaGTCTCGTAGGCTTCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: WPLCPRENIQRIRKRNFQPTRRD*SRRLPV Trigger: TACTGGAAGCCTACGAGAGCAATCCCGCCGAGTGGG...TTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR CCA 90 bp | GTAGGATTTTCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACACGGCAGGCTCTGTGTaGCTGACGTTCTCTACTCGG | + |
|
Preference number: 4 (lower is better) Translates to: VGFSTCIAQGIVCFLRTHTAGSV*LTFSTR Trigger: CCGAGTAGAGAACGTCAGCCACACAGAGCCTGCCGT...GTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGAAAATCCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR GCA 90 bp | TGGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAGCTTCCAGTACAGCCTaGACCTCCTCCACGTTGACT | + |
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Preference number: 4 (lower is better) Translates to: WPLCPRENIQRIRKRNFQASSTA*TSSTLT Trigger: AGTCAACGTGGAGGAGGTGCAGGCTGTACTGGAAGC...TTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR GCA 90 bp | CCTGAAGTTGTAAATGGAGTCCTGATTCCAAACTTGCTGTGGAATGTCATGGTGGCTTCCAGTACAGCCTaGACCTCCTCCACGTTGACT | + |
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Preference number: 4 (lower is better) Translates to: PEVVNGVLIPNLLWNVMVASSTA*TSSTLT Trigger: AGTCAACGTGGAGGAGGTGCAGGCTGTACTGGAAGC...CACCATGACATTCCACAGCAAGTTTGGAATCAGGACTCCATTTACAACTTCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| CDS-3UTR CCA 90 bp | GGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAGGCATGTATCGAAGGGTaGACTGTACAAGTGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: GLSVQGKTFRGSESETSKACIEG*TVQVEA Trigger: AGCCTCCACTTGTACAGTCCACCCTTCGATACATGC...CTTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR TCA 90 bp | ACCAGAAGCCCAAGTAGAGTTTCCATGGACAACCTCTCCCCCACCCCCAATAGAAACTTCCCATTTCCTTaGTCCACAAGATTTCGAGTA | + |
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Preference number: 4 (lower is better) Translates to: TRSPSRVSMDNLSPTPNRNFPFP*STRFRV Trigger: TACTCGAAATCTTGTGGATCAAGGAAATGGGAAGTT...TCTATTGGGGGTGGGGGAGAGGTTGTCCATGGAAACTCTACTTGGGCTTCTGGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035804.9 |
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| CDS-3UTR CCA 90 bp | TGGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAGCATGTATCGAAGGGTaGACTGTACAAGTGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: WPLCPRENIQRIRKRNFQACIEG*TVQVEA Trigger: AGCCTCCACTTGTACAGTCCACCCTTCGATACATGC...TTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR TCA 90 bp | GCAGGCTCTGTGTGGCTGACGTTCTCTACTCGGTGTAAGCCAATGGAATCATTAAACTTCCCATTTCCTTaGTCCACAAGATTTCGAGTA | + |
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Preference number: 4 (lower is better) Translates to: AGSVWLTFSTRCKPMESLNFPFP*STRFRV Trigger: TACTCGAAATCTTGTGGATCAAGGAAATGGGAAGTT...TAATGATTCCATTGGCTTACACCGAGTAGAGAACGTCAGCCACACAGAGCCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234222.2 |
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| CDS-3UTR GCA 90 bp | GGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAGTCCTTTAGATTTCCTTaGAGCAGCTTCAGAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GLSVQGKTFRGSESETSKSFRFP*SSFRKQ Trigger: CTGCTTTCTGAAGCTGCTGCAAGGAAATCTAAAGGA...CTTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| 3UTR CAA 72 bp | CTGATTCCAAACTTGCTGTGGAATGTCATGGTGACTTaGTTTTTATGCCCTGTTCTCTGGTCAAAGGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: LIPNLLWNVMVT*FLCPVLWSKAW Trigger: CCACGCCTTTGACCAGAGAACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTTTGGAATCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| CDS-3UTR TCA 90 bp | GTAGGATTTTCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACTGTGGAATGTCATGGTaGCTTTGTTTTTATGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: VGFSTCIAQGIVCFLRTHCGMSW*LCFYAL Trigger: CAGGGCATAAAAACAAAGTCACCATGACATTCCACA...GTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGAAAATCCTAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR GCA 90 bp | GTAGGATTTTCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACTCCTTTAGATTTCCTTaGAGCAGCTTCAGAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: VGFSTCIAQGIVCFLRTHSFRFP*SSFRKQ Trigger: CTGCTTTCTGAAGCTGCTGCAAGGAAATCTAAAGGA...GTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGAAAATCCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR GCA 90 bp | CCTGAAGTTGTAAATGGAGTCCTGATTCCAAACTTGCTGTGGAATGTCATGGTGTCCTTTAGATTTCCTTaGAGCAGCTTCAGAAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: PEVVNGVLIPNLLWNVMVSFRFP*SSFRKQ Trigger: CTGCTTTCTGAAGCTGCTGCAAGGAAATCTAAAGGA...CACCATGACATTCCACAGCAAGTTTGGAATCAGGACTCCATTTACAACTTCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| CDS-3UTR CCA 90 bp | GTAGGATTTTCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACATTCCAAACTTGCTGTaGAATGTCATGGTGACTTTG | + |
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Preference number: 4 (lower is better) Translates to: VGFSTCIAQGIVCFLRTHIPNLL*NVMVTL Trigger: CAAAGTCACCATGACATTCCACAGCAAGTTTGGAAT...GTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGAAAATCCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR CCA 90 bp | TGGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAATTCCAAACTTGCTGTaGAATGTCATGGTGACTTTG | + |
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Preference number: 4 (lower is better) Translates to: WPLCPRENIQRIRKRNFQIPNLL*NVMVTL Trigger: CAAAGTCACCATGACATTCCACAGCAAGTTTGGAAT...TTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR TCA 90 bp | CCAAACTTGCTGTGGAATGTCATGGTGACTTTGTTTTTATGCCCTGTTCTCTGGAACTTCCCATTTCCTTaGTCCACAAGATTTCGAGTA | + |
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Preference number: 4 (lower is better) Translates to: PNLLWNVMVTLFLCPVLWNFPFP*STRFRV Trigger: TACTCGAAATCTTGTGGATCAAGGAAATGGGAAGTT...CCAGAGAACAGGGCATAAAAACAAAGTCACCATGACATTCCACAGCAAGTTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| CDS CCA 90 bp | TCGAAGGGTGGACTGTACAAGTGGAGGCTCACGGCAGGCTCTGTGTaGCTGACGTTCTCTACTCGGTGTAAGCCAATGGAATCATTAATG | + |
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Preference number: 5 (lower is better) Translates to: SKGGLYKWRLTAGSV*LTFSTRCKPMESLM Trigger: CATTAATGATTCCATTGGCTTACACCGAGTAGAGAACGTCAGCCACACAGAGCCTGCCGTGAGCCTCCACTTGTACAGTCCACCCTTCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035804.9 ENSMUST00000234179.2 ENSMUST00000234819.2 |
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| CDS-3UTR CAA 90 bp | ACCAGAAGCCCAAGTAGAGTTTCCATGGACAACCTCTCCCCCACCCCCAATAGAGTCCTGATTCCAAACTaGCTGTGGAATGTCATGGTG | + |
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Preference number: 5 (lower is better) Translates to: TRSPSRVSMDNLSPTPNRVLIPN*LWNVMV Trigger: CACCATGACATTCCACAGCAAGTTTGGAATCAGGAC...TCTATTGGGGGTGGGGGAGAGGTTGTCCATGGAAACTCTACTTGGGCTTCTGGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS GCA 90 bp | GCAGCAGCTTCAGAAAGCAGTGGGAGTCCGTGTGATCATGAATACTaGTGTATTGATCGAATTTGGCATACAAAGCCCACTCGGCGGGAT | + |
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Preference number: 5 (lower is better) Translates to: AAASESSGSPCDHEY*CIDRIWHTKPTRRD Trigger: ATCCCGCCGAGTGGGCTTTGTATGCCAAATTCGATCAATACAGCAGTATTCATGATCACACGGACTCCCACTGCTTTCTGAAGCTGCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234819.2 |
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| CDS-3UTR CAA 90 bp | TCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACCCTTTGCAGGTCCTGATTCCAAACTaGCTGTGGAATGTCATGGTG | + |
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Preference number: 5 (lower is better) Translates to: STCIAQGIVCFLRTHPLQVLIPN*LWNVMV Trigger: CACCATGACATTCCACAGCAAGTTTGGAATCAGGAC...CTGCAAAGGGTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR CAA 90 bp | TCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACCCTTTGCAGAATGTCATGGTGACTTaGTTTTTATGCCCTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: STCIAQGIVCFLRTHPLQNVMVT*FLCPVL Trigger: GAGAACAGGGCATAAAAACAAAGTCACCATGACATT...CTGCAAAGGGTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR CAA 90 bp | TGTTTTTATGCCCTGTTCTCTGGTCAAAGGCGTGGCATGTATCGAAGGGTGGACGTTCTTTCAGACTTCTaGATCATCTCGTTGGATTTT | + |
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Preference number: 5 (lower is better) Translates to: CFYALFSGQRRGMYRRVDVLSDF*IISLDF Trigger: AAAATCCAACGAGATGATCAAGAAGTCTGAAAGAAC...GTCCACCCTTCGATACATGCCACGCCTTTGACCAGAGAACAGGGCATAAAAACA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000234064.2 |
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| CDS-3UTR CAA 90 bp | TCCACCTGCATAGCTCAGGGTATTGTTTGCTTCCTTAGGACACACCCTTTGCAGGTTCTTTCAGACTTCTaGATCATCTCGTTGGATTTT | + |
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Preference number: 5 (lower is better) Translates to: STCIAQGIVCFLRTHPLQVLSDF*IISLDF Trigger: AAAATCCAACGAGATGATCAAGAAGTCTGAAAGAAC...CTGCAAAGGGTGTGTCCTAAGGAAGCAAACAATACCCTGAGCTATGCAGGTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR CAA 90 bp | TGGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAAATGTCATGGTGACTTaGTTTTTATGCCCTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: WPLCPRENIQRIRKRNFQNVMVT*FLCPVL Trigger: GAGAACAGGGCATAAAAACAAAGTCACCATGACATT...TTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS-3UTR CAA 90 bp | TGGCCTCTCTGTCCAAGGGAAAACATTCAGAGGATCAGAAAGCGAAACTTCCAAGTTCTTTCAGACTTCTaGATCATCTCGTTGGATTTT | + |
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Preference number: 5 (lower is better) Translates to: WPLCPRENIQRIRKRNFQVLSDF*IISLDF Trigger: AAAATCCAACGAGATGATCAAGAAGTCTGAAAGAAC...TTGGAAGTTTCGCTTTCTGATCCTCTGAATGTTTTCCCTTGGACAGAGAGGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035804.9 ENSMUST00000234819.2 |
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| CDS TCA 72 bp | CGTAGGCTTCCAGTACAGCCTGCACCTCCTCCACGTTaGCTTCGTCCCCCGCGAAGAGCTCATGTAAGATGC | + |
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Preference number: 6 (lower is better) Translates to: RRLPVQPAPPPR*LRPPRRAHVRC Trigger: GCATCTTACATGAGCTCTTCGCGGGGGACGAAGTCAACGTGGAGGAGGTGCAGGCTGTACTGGAAGCCTACG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000035804.9 ENSMUST00000234064.2 ENSMUST00000234222.2 ENSMUST00000234819.2 |
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| CDS GCA 72 bp | GATCGAATTTGGCATACAAAGCCCACTCGGCGGGATTaGTCTCGTAGGCTTCCAGTACAGCCTGCACCTCCT | + |
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Preference number: 6 (lower is better) Translates to: DRIWHTKPTRRD*SRRLPVQPAPP Trigger: AGGAGGTGCAGGCTGTACTGGAAGCCTACGAGAGCAATCCCGCCGAGTGGGCTTTGTATGCCAAATTCGATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000035804.9 ENSMUST00000234064.2 ENSMUST00000234222.2 ENSMUST00000234819.2 |
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| CDS TCA 72 bp | TGTACAAGTGGAGGCTCACGGCAGGCTCTGTGTGGCTaGCGTTCTCTACTCGGTGTAAGCCAATGGAATCAT | + |
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Preference number: 6 (lower is better) Translates to: CTSGGSRQALCG*RSLLGVSQWNH Trigger: ATGATTCCATTGGCTTACACCGAGTAGAGAACGTCAGCCACACAGAGCCTGCCGTGAGCCTCCACTTGTACA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035804.9 ENSMUST00000234179.2 ENSMUST00000234819.2 |
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| CDS CAA 72 bp | GCAGTGGGAGTCCGTGTGATCATGAATACTGCTGTATaGATCGAATTTGGCATACAAAGCCCACTCGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: AVGVRVIMNTAV*IEFGIQSPLGG Trigger: CCCGCCGAGTGGGCTTTGTATGCCAAATTCGATCAATACAGCAGTATTCATGATCACACGGACTCCCACTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234819.2 |
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| CDS CAA 90 bp | CTTCAGAAAGCAGTGGGAGTCCGTGTGATCATGAATACTGCTGTATaGATCGAATTTGGCATACAAAGCCCACTCGGCGGGATTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: LQKAVGVRVIMNTAV*IEFGIQSPLGGIAL Trigger: GAGAGCAATCCCGCCGAGTGGGCTTTGTATGCCAAATTCGATCAATACAGCAGTATTCATGATCACACGGACTCCCACTGCTTTCTGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234819.2 |
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| CDS CCA 72 bp | CCGTGTGATCATGAATACTGCTGTATTGATCGAATTTaGCATACAAAGCCCACTCGGCGGGATTGCTCTCGT | + |
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Preference number: 6 (lower is better) Translates to: PCDHEYCCIDRI*HTKPTRRDCSR Trigger: ACGAGAGCAATCCCGCCGAGTGGGCTTTGTATGCCAAATTCGATCAATACAGCAGTATTCATGATCACACGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234819.2 |
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| CDS CAA 90 bp | AAACTTCCCATTTCCTTGATCCACAAGATTTCGAGTATACCTGTATaGATCGAATTTGGCATACAAAGCCCACTCGGCGGGATTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: KLPISLIHKISSIPV*IEFGIQSPLGGIAL Trigger: GAGAGCAATCCCGCCGAGTGGGCTTTGTATGCCAAATTCGATCAATACAGGTATACTCGAAATCTTGTGGATCAAGGAAATGGGAAGTTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000035804.9 ENSMUST00000234064.2 ENSMUST00000234179.2 ENSMUST00000234222.2 |
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| CDS GCA 72 bp | TCAGAAAGCAGTGGGAGTCCGTGTGATCATGAATACTaGTGTATTGATCGAATTTGGCATACAAAGCCCACT | + |
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Preference number: 6 (lower is better) Translates to: SESSGSPCDHEY*CIDRIWHTKPT Trigger: AGTGGGCTTTGTATGCCAAATTCGATCAATACAGCAGTATTCATGATCACACGGACTCCCACTGCTTTCTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000234819.2 |
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| CDS CAA 72 bp | ATTTCCTTGATCCACAAGATTTCGAGTATACCTGTATaGATCGAATTTGGCATACAAAGCCCACTCGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: ISLIHKISSIPV*IEFGIQSPLGG Trigger: CCCGCCGAGTGGGCTTTGTATGCCAAATTCGATCAATACAGGTATACTCGAAATCTTGTGGATCAAGGAAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000035804.9 ENSMUST00000234064.2 ENSMUST00000234179.2 ENSMUST00000234222.2 |
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| CDS CAA 90 bp | CCCTTCACCCCAGCACAGAATCATCAGATTAAACTTCCCATTTCCTaGATCCACAAGATTTCGAGTATACCTGTATTGATCGAATTTGGC | + |
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Preference number: 6 (lower is better) Translates to: PFTPAQNHQIKLPIS*IHKISSIPVLIEFG Trigger: GCCAAATTCGATCAATACAGGTATACTCGAAATCTTGTGGATCAAGGAAATGGGAAGTTTAATCTGATGATTCTGTGCTGGGGTGAAGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000035804.9 ENSMUST00000234064.2 ENSMUST00000234179.2 ENSMUST00000234222.2 |
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