Pregenerated sensors for CDNF (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039496Ensembl transcript IDs: ENSMUST00000036350.3
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTGGCAACAGCAAGGTAGCCCAGCCCACTATAAAGGGGGCTGCTTaGCCCTTCCTCTCTCTCTTTAAGCCCTCACCTTTCTTACTCTCA | + |
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Preference number: 1 (lower is better) Translates to: PGNSKVAQPTIKGAA*PFLSLFKPSPFLLS Trigger: TGAGAGTAAGAAAGGTGAGGGCTTAAAGAGAGAGAGGAAGGGCCAAGCAGCCCCCTTTATAGTGGGCTGGGCTACCTTGCTGTTGCCAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CCA 90 bp | GCCTCCAGACAGAGTGCTGGCATTAAAGGCATTCACCACCACACCTaGCATCGGTTTGATTTGAAGGTTTGTTCCCTAGCTAGTGGTAAT | + |
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Preference number: 1 (lower is better) Translates to: ASRQSAGIKGIHHHT*HRFDLKVCSLASGN Trigger: ATTACCACTAGCTAGGGAACAAACCTTCAAATCAAACCGATGCCAGGTGTGGTGGTGAATGCCTTTAATGCCAGCACTCTGTCTGGAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR GCA 90 bp | ACTGCATCCTCCAAGAAGGATGAGAAAAGCACCTTGAGGTCTCTGTaGTCTGCAATTTTAGCGACCATGAGGAAGCACGGGTTGATCATA | + |
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Preference number: 1 (lower is better) Translates to: TASSKKDEKSTLRSL*SAILATMRKHGLII Trigger: TATGATCAACCCGTGCTTCCTCATGGTCGCTAAAATTGCAGAGCACAGAGACCTCAAGGTGCTTTTCTCATCCTTCTTGGAGGATGCAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR GCA 90 bp | ATGTGCTTCTTATTGATCTATGGACAGAGAATGGAGCTGAAACATTaGCTGCTTCTTAAGACTGATAGGCTAGCATTAGAAACCACAAGC | + |
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Preference number: 1 (lower is better) Translates to: MCFLLIYGQRMELKH*LLLKTDRLALETTS Trigger: GCTTGTGGTTTCTAATGCTAGCCTATCAGTCTTAAGAAGCAGGCAATGTTTCAGCTCCATTCTCTGTCCATAGATCAATAAGAAGCACAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR GCA 90 bp | TGGTGGCGCACGCCTTTAATCCCAGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCACTATAAAGGGGGCTaGTTGGCCCTTCCTCTCTCT | + |
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Preference number: 2 (lower is better) Translates to: WWRTPLIPAEAGGFLSLRHYKGG*LALPLS Trigger: AGAGAGAGGAAGGGCCAAGCAGCCCCCTTTATAGTG...CCTCAAACTCAGAAATCCGCCTGCCTCTGCTGGGATTAAAGGCGTGCGCCACCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | GTTTCAGTTACCTGGCAACAGCAAGGTAGCCCAGCCCACTATAAAGGGGGCTGCATCCTCCAAGAAGGATaGGAAAAGCACCTTGAGGTC | + |
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Preference number: 2 (lower is better) Translates to: VSVTWQQQGSPAHYKGGCILQEG*EKHLEV Trigger: GACCTCAAGGTGCTTTTCTCATCCTTCTTGGAGGAT...GCAGCCCCCTTTATAGTGGGCTGGGCTACCTTGCTGTTGCCAGGTAACTGAAAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CCA 90 bp | CATCACCCCAGAAACTTTAAAGAGAATGCTTTCTTGAGTAGCCACACCCTGACCACCTCTGGGCACGAGTaGGAGGGCGTTGCTAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: HHPRNFKENAFLSSHTLTTSGHE*EGVARE Trigger: CTCTCTAGCAACGCCCTCCCACTCGTGCCCAGAGGT...GGTCAGGGTGTGGCTACTCAAGAAAGCATTCTCTTTAAAGTTTCTGGGGTGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | CCACACCCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATTGATCCCTGAGCCCAAGTaGCTCTTCCCTCCCCACACT | + |
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Preference number: 2 (lower is better) Translates to: PHPDLFPKGNHLTMCFLLIPEPK*LFPPHT Trigger: AGTGTGGGGAGGGAAGAGTCACTTGGGCTCAGGGAT...CAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGGGTGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CCA 90 bp | CATCACCCCAGAAACTTTAAAGAGAATGCTTTCTTGAGTAGCCACACCCTGACCCAACTGGGCAGTCCCTaGTTAGCCCTAACCAGCACA | + |
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Preference number: 2 (lower is better) Translates to: HHPRNFKENAFLSSHTLTQLGSP*LALTST Trigger: TGTGCTGGTTAGGGCTAACCAGGGACTGCCCAGTTG...GGTCAGGGTGTGGCTACTCAAGAAAGCATTCTCTTTAAAGTTTCTGGGGTGATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | AGCAGAGCATCTACTTCCATCTCTGCTTCTAGGACATGGATGAGTTTGACCAATGATGGACCAAATCCCTaGGCCCAAGTGACTCTTCCC | + |
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Preference number: 2 (lower is better) Translates to: SRASTSISASRTWMSLTNDGPNP*AQVTLP Trigger: GGGAAGAGTCACTTGGGCTCAGGGATTTGGTCCATC...ATTGGTCAAACTCATCCATGTCCTAGAAGCAGAGATGGAAGTAGATGCTCTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR GCA 90 bp | AGCACACTTGAGTCAGTAGTGATAAACTACATTGTCCTTCTGCTGTGCCTTGGATCTAACTGCAGTCCATaGTTCCTGACAGCCGACGGG | + |
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Preference number: 2 (lower is better) Translates to: STLESVVINYIVLLLCLGSNCSP*FLTADG Trigger: CCCGTCGGCTGTCAGGAAGCATGGACTGCAGTTAGA...TCCAAGGCACAGCAGAAGGACAATGTAGTTTATCACTACTGACTCAAGTGTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR GCA 90 bp | ACCTCTGGGCACGAGTGGGAGGGCGTTGCTAGAGAGAGTTTAACTGTGGAAGGATCATTTTCTTCTAACTaGAGTCCATGCTTCCTGACA | + |
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Preference number: 2 (lower is better) Translates to: TSGHEWEGVARESLTVEGSFSSN*SPCFLT Trigger: TGTCAGGAAGCATGGACTGCAGTTAGAAGAAAATGA...TCCTTCCACAGTTAAACTCTCTCTAGCAACGCCCTCCCACTCGTGCCCAGAGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | ATCAATATGATGATCATATCTCTCACCTCCTGCCTTGATAAAGTACAGTCCCATCTTGTCGCCCTGCTCTaGGCTGTGCTGCCCTTAGCT | + |
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Preference number: 2 (lower is better) Translates to: INMMIISLTSCLDKVQSHLVALL*AVLPLA Trigger: AGCTAAGGGCAGCACAGCTCAGAGCAGGGCGACAAG...ATGGGACTGTACTTTATCAAGGCAGGAGGTGAGAGATATGATCATCATATTGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CCA 90 bp | AGCAGAGCATCTACTTCCATCTCTGCTTCTAGGACATGGATGAGTTTGACCAATCTCTCCATGTGGCCATaGCCAGCCTCTCTCAATAAG | + |
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Preference number: 2 (lower is better) Translates to: SRASTSISASRTWMSLTNLSMWP*PASLNK Trigger: CTTATTGAGAGAGGCTGGCCATGGCCACATGGAGAG...ATTGGTCAAACTCATCCATGTCCTAGAAGCAGAGATGGAAGTAGATGCTCTGCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | CCACACCCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATTGTGTGAGGTGGGTGTCTaGCTGACAGAAGTGGATGAA | + |
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Preference number: 2 (lower is better) Translates to: PHPDLFPKGNHLTMCFLLCEVGV*LTEVDE Trigger: TTCATCCACTTCTGTCAGTCAGACACCCACCTCACA...CAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGGGTGTGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | AGCACACTTGAGTCAGTAGTGATAAACTACATTGTCCTTCTGCTGTGCCTTGGAAATTTGGGGAAACTGTaGGGTGGGTGTCTGACTGAC | + |
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Preference number: 2 (lower is better) Translates to: STLESVVINYIVLLLCLGNLGKL*GGCLTD Trigger: GTCAGTCAGACACCCACCTCACAGTTTCCCCAAATT...TCCAAGGCACAGCAGAAGGACAATGTAGTTTATCACTACTGACTCAAGTGTGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | AGCAGAGCATCTACTTCCATCTCTGCTTCTAGGACATGGATGAGTTTGACCAATATGAGAAAAGCACCTTaGGGTCTCTGTGCTCTGCAA | + |
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Preference number: 2 (lower is better) Translates to: SRASTSISASRTWMSLTNMRKAP*GLCALQ Trigger: TTGCAGAGCACAGAGACCTCAAGGTGCTTTTCTCAT...ATTGGTCAAACTCATCCATGTCCTAGAAGCAGAGATGGAAGTAGATGCTCTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR TCA 90 bp | ATCAATATGATGATCATATCTCTCACCTCCTGCCTTGATAAAGTACAGTCCCATTTAGCTACCCTGCTGTaGTGGACCAAATCCCTGAGC | + |
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Preference number: 2 (lower is better) Translates to: INMMIISLTSCLDKVQSHLATLL*WTKSLS Trigger: GCTCAGGGATTTGGTCCATCACAGCAGGGTAGCTAA...ATGGGACTGTACTTTATCAAGGCAGGAGGTGAGAGATATGATCATCATATTGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR GCA 90 bp | CATCACCCCAGAAACTTTAAAGAGAATGCTTTCTTGAGTAGCCACACCCTGACCATTCGTGCTGTGCAATaGTTAATCGCCATTGTTAAC | + |
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Preference number: 2 (lower is better) Translates to: HHPRNFKENAFLSSHTLTIRAVQ*LIAIVN Trigger: GTTAACAATGGCGATTAAGCATTGCACAGCACGAAT...GGTCAGGGTGTGGCTACTCAAGAAAGCATTCTCTTTAAAGTTTCTGGGGTGATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CAA 90 bp | CCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATaGATCTATGGACAGAGAATGGAGCTGAAACATTGCCTGCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: PDLFPKGNHLTMCFL*IYGQRMELKHCLLL Trigger: AAGAAGCAGGCAATGTTTCAGCTCCATTCTCTGTCCATAGATCAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR GCA 90 bp | ATCAATATGATGATCATATCTCTCACCTCCTGCCTTGATAAAGTACAGTCCCATGAGGTCTCTGTGCTCTaGAATTTTAGCGACCATGAG | + |
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Preference number: 2 (lower is better) Translates to: INMMIISLTSCLDKVQSHEVSVL*NFSDHE Trigger: CTCATGGTCGCTAAAATTGCAGAGCACAGAGACCTC...ATGGGACTGTACTTTATCAAGGCAGGAGGTGAGAGATATGATCATCATATTGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR GCA 90 bp | ATCAATATGATGATCATATCTCTCACCTCCTGCCTTGATAAAGTACAGTCCCATACTACATTGTCCTTCTaGTGTGCCTTGGATCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: INMMIISLTSCLDKVQSHTTLSF*CALDLN Trigger: GTTCAGATCCAAGGCACAGCAGAAGGACAATGTAGT...ATGGGACTGTACTTTATCAAGGCAGGAGGTGAGAGATATGATCATCATATTGAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CCA 90 bp | ATCAATATGATGATCATATCTCTCACCTCCTGCCTTGATAAAGTACAGTCCCATAGCCTTATCATTATTTaGACATCACTTTCTGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: INMMIISLTSCLDKVQSHSLIII*TSLSAS Trigger: AGAGGCAGAAAGTGATGTCCAAATAATGATAAGGCT...ATGGGACTGTACTTTATCAAGGCAGGAGGTGAGAGATATGATCATCATATTGAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR GCA 72 bp | CCCTGCTGCCTGCACGTGGGGAGCATGCTTTCATCCTaGCTGACACGGGGCAGTGAAGAAGACTCTGAGCTT | + |
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Preference number: 3 (lower is better) Translates to: PCCLHVGSMLSS*LTRGSEEDSEL Trigger: AAGCTCAGAGTCTTCTTCACTGCCCCGTGTCAGGCAGGATGAAAGCATGCTCCCCACGTGCAGGCAGCAGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CCA 72 bp | AGCAAGGTAGCCCAGCCCACTATAAAGGGGGCTGCTTaGCCCTTCCTCTCTCTCTTTAAGCCCTCACCTTTC | + |
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Preference number: 3 (lower is better) Translates to: SKVAQPTIKGAA*PFLSLFKPSPF Trigger: GAAAGGTGAGGGCTTAAAGAGAGAGAGGAAGGGCCAAGCAGCCCCCTTTATAGTGGGCTGGGCTACCTTGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR TCA 72 bp | AATGTGAGCAGTGGCATTCCCGTGCTGGGGTCAGACTaGCAGCTAGCAGAGCATCTACTTCCATCTCTGCTT | + |
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Preference number: 3 (lower is better) Translates to: NVSSGIPVLGSD*QLAEHLLPSLL Trigger: AAGCAGAGATGGAAGTAGATGCTCTGCTAGCTGTCAGTCTGACCCCAGCACGGGAATGCCACTGCTCACATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CCA 72 bp | AGTGACTCTTCCCTCCCCACACTTGTTTCAGTTACCTaGCAACAGCAAGGTAGCCCAGCCCACTATAAAGGG | + |
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Preference number: 3 (lower is better) Translates to: SDSSLPTLVSVT*QQQGSPAHYKG Trigger: CCCTTTATAGTGGGCTGGGCTACCTTGCTGTTGCCAGGTAACTGAAACAAGTGTGGGGAGGGAAGAGTCACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR TCA 72 bp | CCTAAACAACACAACTCCACAATACAACAGCAAAACTaGCGGCCAACTGGGCAGTCCCTGGTTAGCCCTAAC | + |
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Preference number: 3 (lower is better) Translates to: PKQHNSTIQQQN*RPTGQSLVSPN Trigger: GTTAGGGCTAACCAGGGACTGCCCAGTTGGCCGTCAGTTTTGCTGTTGTATTGTGGAGTTGTGTTGTTTAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR TCA 72 bp | CCATTGTTAACTTGGTGGAATTTAGAATTGCCTAGGTaGCACATACCTCTGGGCACGAGTGGGAGGGCGTTG | + |
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Preference number: 3 (lower is better) Translates to: PLLTWWNLELPR*HIPLGTSGRAL Trigger: CAACGCCCTCCCACTCGTGCCCAGAGGTATGTGTCACCTAGGCAATTCTAAATTCCACCAAGTTAACAATGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR GCA 72 bp | TCCAAGAAGGATGAGAAAAGCACCTTGAGGTCTCTGTaGTCTGCAATTTTAGCGACCATGAGGAAGCACGGG | + |
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Preference number: 3 (lower is better) Translates to: SKKDEKSTLRSL*SAILATMRKHG Trigger: CCCGTGCTTCCTCATGGTCGCTAAAATTGCAGAGCACAGAGACCTCAAGGTGCTTTTCTCATCCTTCTTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CCA 72 bp | AGCAGAGCATCTACTTCCATCTCTGCTTCTAGGACATaGATGAGTTTGACCAATGGCCTCACACTCCTGCTG | + |
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Preference number: 3 (lower is better) Translates to: SRASTSISASRT*MSLTNGLTLLL Trigger: CAGCAGGAGTGTGAGGCCATTGGTCAAACTCATCCATGTCCTAGAAGCAGAGATGGAAGTAGATGCTCTGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | TGGTGGCGCACGCCTTTAATCCCAGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCAGACTTTTTATGGATaGCTGATTTGTATTCTTCCG | + |
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Preference number: 3 (lower is better) Translates to: WWRTPLIPAEAGGFLSLRQTFYG*LICILP Trigger: CGGAAGAATACAAATCAGCAATCCATAAAAAGTCTG...CCTCAAACTCAGAAATCCGCCTGCCTCTGCTGGGATTAAAGGCGTGCGCCACCA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR TCA 72 bp | CAATGCAAAGGCAACCACTGCATCCTCCAAGAAGGATaGGAAAAGCACCTTGAGGTCTCTGTGCTCTGCAAT | + |
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Preference number: 3 (lower is better) Translates to: QCKGNHCILQEG*EKHLEVSVLCN Trigger: ATTGCAGAGCACAGAGACCTCAAGGTGCTTTTCTCATCCTTCTTGGAGGATGCAGTGGTTGCCTTTGCATTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | CCACACCCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATTGTATAAAGGGGGCTGCTaGGCCCTTCCTCTCTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: PHPDLFPKGNHLTMCFLLYKGGC*ALPLSL Trigger: AAGAGAGAGAGGAAGGGCCAAGCAGCCCCCTTTATA...CAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGGGTGTGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR GCA 72 bp | GAGTCAGTAGTGATAAACTACATTGTCCTTCTGCTGTaGCTTGGATCTGAACTGTCCTCCTCCAGCTCAGTT | + |
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Preference number: 3 (lower is better) Translates to: ESVVINYIVLLL*LGSELSSSSSV Trigger: AACTGAGCTGGAGGAGGACAGTTCAGATCCAAGGCACAGCAGAAGGACAATGTAGTTTATCACTACTGACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | AGAATGGAGCTGAAACATTGCCTGCTTCTTAAGACTGATAGGCTAGCATTAGAATCCTTCTGCTGTGCCTaGGATCTGAACTGTCCTCCT | + |
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Preference number: 3 (lower is better) Translates to: RMELKHCLLLKTDRLALESFCCA*DLNCPP Trigger: AGGAGGACAGTTCAGATCCAAGGCACAGCAGAAGGA...TTCTAATGCTAGCCTATCAGTCTTAAGAAGCAGGCAATGTTTCAGCTCCATTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | AGAATGGAGCTGAAACATTGCCTGCTTCTTAAGACTGATAGGCTAGCATTAGAAGATGAGAAAAGCACCTaGAGGTCTCTGTGCTCTGCA | + |
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Preference number: 3 (lower is better) Translates to: RMELKHCLLLKTDRLALEDEKST*RSLCSA Trigger: TGCAGAGCACAGAGACCTCAAGGTGCTTTTCTCATC...TTCTAATGCTAGCCTATCAGTCTTAAGAAGCAGGCAATGTTTCAGCTCCATTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | AGAATGGAGCTGAAACATTGCCTGCTTCTTAAGACTGATAGGCTAGCATTAGAAAGGACATGGATGAGTTaGACCAATGGCCTCACACTC | + |
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Preference number: 3 (lower is better) Translates to: RMELKHCLLLKTDRLALERTWMS*TNGLTL Trigger: GAGTGTGAGGCCATTGGTCAAACTCATCCATGTCCT...TTCTAATGCTAGCCTATCAGTCTTAAGAAGCAGGCAATGTTTCAGCTCCATTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR GCA 72 bp | CCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTaGTTCTTATTGATCTATGGACAGAGAATGGAGCTG | + |
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Preference number: 3 (lower is better) Translates to: PDLFPKGNHLTM*FLLIYGQRMEL Trigger: CAGCTCCATTCTCTGTCCATAGATCAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CCA 72 bp | AGGCAACCATTTAACCATGTGCTTCTTATTGATCTATaGACAGAGAATGGAGCTGAAACATTGCCTGCTTCT | + |
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Preference number: 3 (lower is better) Translates to: RQPFNHVLLIDL*TENGAETLPAS Trigger: AGAAGCAGGCAATGTTTCAGCTCCATTCTCTGTCCATAGATCAATAAGAAGCACATGGTTAAATGGTTGCCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | AGCACACTTGAGTCAGTAGTGATAAACTACATTGTCCTTCTGCTGTGCCTTGGATGTTTGGTTGTTTGGTaGGTTCATTGGTTGGATTTT | + |
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Preference number: 3 (lower is better) Translates to: STLESVVINYIVLLLCLGCLVVW*VHWLDF Trigger: AAAATCCAACCAATGAACCAACCAAACAACCAAACA...TCCAAGGCACAGCAGAAGGACAATGTAGTTTATCACTACTGACTCAAGTGTGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | ATCAATATGATGATCATATCTCTCACCTCCTGCCTTGATAAAGTACAGTCCCATCAGCCTTATCATTATTaGGACATCACTTTCTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: INMMIISLTSCLDKVQSHQPYHY*DITFCL Trigger: GAGGCAGAAAGTGATGTCCAAATAATGATAAGGCTG...ATGGGACTGTACTTTATCAAGGCAGGAGGTGAGAGATATGATCATCATATTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR GCA 72 bp | AGGTTACAGCCTTATCATTATTTGGACATCACTTTCTaGCTCTCTATAATCACAACAGCCTCTATGACAAGC | + |
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Preference number: 3 (lower is better) Translates to: RLQPYHYLDITF*LSIITTASMTS Trigger: GCTTGTCATAGAGGCTGTTGTGATTATAGAGAGGCAGAAAGTGATGTCCAAATAATGATAAGGCTGTAACCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR-3UTR CAA 90 bp | ATCAATATGATGATCATATCTCTCACCTCCTGCCTTGATAAAGTACAGTCCCATACCATGTGCTTCTTATaGATCTATGGACAGAGAATG | + |
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Preference number: 3 (lower is better) Translates to: INMMIISLTSCLDKVQSHTMCFL*IYGQRM Trigger: CATTCTCTGTCCATAGATCAATAAGAAGCACATGGT...ATGGGACTGTACTTTATCAAGGCAGGAGGTGAGAGATATGATCATCATATTGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR GCA 90 bp | CATCACCCCAGAAACTTTAAAGAGAATGCTTTCTTGAGTAGCCACACCCTGACCCCGGCCTCCAGGCCCTaGGCCAGCACAGGGTTCGAG | + |
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Preference number: 4 (lower is better) Translates to: HHPRNFKENAFLSSHTLTPASRP*ASTGFE Trigger: CTCGAACCCTGTGCTGGCGCAGGGCCTGGAGGCCGG...GGTCAGGGTGTGGCTACTCAAGAAAGCATTCTCTTTAAAGTTTCTGGGGTGATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR CCA 90 bp | TTTCAGTTACCTGGCAACAGCAAGGTAGCCCAGCCCACTATAAAGGGGGCTGCTTGGTGGCTGCATCTGTaGTGGCCCCCAGATAATAGC | + |
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Preference number: 4 (lower is better) Translates to: FQLPGNSKVAQPTIKGAAWWLHL*WPPDNS Trigger: GCTATTATCTGGGGGCCACCACAGATGCAGCCACCA...AGCAGCCCCCTTTATAGTGGGCTGGGCTACCTTGCTGTTGCCAGGTAACTGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR GCA 90 bp | ACCTCTGGGCACGAGTGGGAGGGCGTTGCTAGAGAGAGTTTAACTGTGGAAGGAAAAAGTCTATGCCTCTaGTTAGCAGGGAGTTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: TSGHEWEGVARESLTVEGKSLCL*LAGSCR Trigger: TCTACAACTCCCTGCTAAGCAGAGGCATAGACTTTT...TCCTTCCACAGTTAAACTCTCTCTAGCAACGCCCTCCCACTCGTGCCCAGAGGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR CCA 90 bp | CATAGCAATGCAAAGGCAACCACTGCATCCTCCAAGAAGGATGAGAAAAGCACCCTTCTCCTAGGATCTTaGTGGCTGCATCTGTGGTGG | + |
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Preference number: 4 (lower is better) Translates to: HSNAKATTASSKKDEKSTLLLGS*WLHLWW Trigger: CCACCACAGATGCAGCCACCAAGATCCTAGGAGAAG...GGTGCTTTTCTCATCCTTCTTGGAGGATGCAGTGGTTGCCTTTGCATTGCTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR CCA 90 bp | CATCACCCCAGAAACTTTAAAGAGAATGCTTTCTTGAGTAGCCACACCCTGACCTGGCTGCATCTGTGGTaGCCCCCAGATAATAGCACA | + |
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Preference number: 4 (lower is better) Translates to: HHPRNFKENAFLSSHTLTWLHLW*PPDNST Trigger: TGTGCTATTATCTGGGGGCCACCACAGATGCAGCCA...GGTCAGGGTGTGGCTACTCAAGAAAGCATTCTCTTTAAAGTTTCTGGGGTGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CAA 72 bp | ACCACTGCATCCTCCAAGAAGGATGAGAAAAGCACCTaGAGGTCTCTGTGCTCTGCAATTTTAGCGACCATG | + |
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Preference number: 4 (lower is better) Translates to: TTASSKKDEKST*RSLCSAILATM Trigger: CATGGTCGCTAAAATTGCAGAGCACAGAGACCTCAAGGTGCTTTTCTCATCCTTCTTGGAGGATGCAGTGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CAA 72 bp | TCCCATCACCCCAGAAACTTTAAAGAGAATGCTTTCTaGAGTAGCCACACCCTGACCTATTTCCCAAAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SHHPRNFKENAF*SSHTLTYFPKA Trigger: TGCCTTTGGGAAATAGGTCAGGGTGTGGCTACTCAAGAAAGCATTCTCTTTAAAGTTTCTGGGGTGATGGGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR TCA 90 bp | CCACACCCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATTGCATCTGAGCAAAAGTTaGGCAGCTCTTTCTCTATGG | + |
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Preference number: 4 (lower is better) Translates to: PHPDLFPKGNHLTMCFLLHLSKS*AALSLW Trigger: CCATAGAGAAAGAGCTGCTCAACTTTTGCTCAGATG...CAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGGGTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR CCA 90 bp | CCACACCCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATTGGCAGCTCTTTCTCTATaGTGTCCGCAGAAAAGTCTA | + |
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Preference number: 4 (lower is better) Translates to: PHPDLFPKGNHLTMCFLLAALSL*CPQKSL Trigger: TAGACTTTTCTGCGGACACCATAGAGAAAGAGCTGC...CAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGGGTGTGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR CCA 90 bp | CCTGACCTATTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATTGATCTATTTCAGCTCACAGATCTaGCTGTCCATCTTCTTTAGC | + |
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Preference number: 4 (lower is better) Translates to: PDLFPKGNHLTMCFLLIYFSSQI*LSIFFS Trigger: GCTAAAGAAGATGGACAGCCAGATCTGTGAGCTGAA...ATAGATCAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAATAGGTCAGG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| 3UTR CAA 72 bp | TTTCCCAAAGGCAACCATTTAACCATGTGCTTCTTATaGATCTATGGACAGAGAATGGAGCTGAAACATTGC | + |
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Preference number: 4 (lower is better) Translates to: FPKGNHLTMCFL*IYGQRMELKHC Trigger: GCAATGTTTCAGCTCCATTCTCTGTCCATAGATCAATAAGAAGCACATGGTTAAATGGTTGCCTTTGGGAAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR CAA 90 bp | AAATCCCTGAGCCCAAGTGACTCTTCCCTCCCCACACTTGTTTCAGTTACCTGGACTTCTCCTAGGATCTaGGTGGCTGCATCTGTGGTG | + |
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Preference number: 5 (lower is better) Translates to: KSLSPSDSSLPTLVSVTWTSPRI*VAASVV Trigger: CACCACAGATGCAGCCACCAAGATCCTAGGAGAAGT...CCAGGTAACTGAAACAAGTGTGGGGAGGGAAGAGTCACTTGGGCTCAGGGATTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS-3UTR CAA 90 bp | GTTTCAGTTACCTGGCAACAGCAAGGTAGCCCAGCCCACTATAAAGGGGGCTGCGCATCTGAGCAAAAGTaGAGCAGCTCTTTCTCTATG | + |
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Preference number: 5 (lower is better) Translates to: VSVTWQQQGSPAHYKGGCASEQK*SSSFSM Trigger: CATAGAGAAAGAGCTGCTCAACTTTTGCTCAGATGC...GCAGCCCCCTTTATAGTGGGCTGGGCTACCTTGCTGTTGCCAGGTAACTGAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS TCA 72 bp | TCTTCACGGCAGGTATGTGTACACTCATGGGACGAGTaGCTTCTCCTAGGATCTTGGTGGCTGCATCTGTGG | + |
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Preference number: 6 (lower is better) Translates to: SSRQVCVHSWDE*LLLGSWWLHLW Trigger: CCACAGATGCAGCCACCAAGATCCTAGGAGAAGTCACTCGTCCCATGAGTGTACACATACCTGCCGTGAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS GCA 72 bp | GCAGCTCTTTCTCTATGGTGTCCGCAGAAAAGTCTATaGCTCTGCTTAGCAGGGAGTTGTAGAATCGGTCTA | + |
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Preference number: 6 (lower is better) Translates to: AALSLWCPQKSL*LCLAGSCRIGL Trigger: TAGACCGATTCTACAACTCCCTGCTAAGCAGAGGCATAGACTTTTCTGCGGACACCATAGAGAAAGAGCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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| CDS GCA 72 bp | CTTTCTCTATGGTGTCCGCAGAAAAGTCTATGCCTCTaGTTAGCAGGGAGTTGTAGAATCGGTCTAAGAATT | + |
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Preference number: 6 (lower is better) Translates to: LSLWCPQKSLCL*LAGSCRIGLRI Trigger: AATTCTTAGACCGATTCTACAACTCCCTGCTAAGCAGAGGCATAGACTTTTCTGCGGACACCATAGAGAAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000036350.3 |
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