Pregenerated sensors for CDKN2C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028551Ensembl transcript IDs: ENSMUST00000063531.5, ENSMUST00000097921.10
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | GACAGCCAACCAACTAACGGACAGTGTGAGGTCAGTGAGAGAGACCTCTACACAGCGGTGTCCCCCTTATaGTTCCGATGCCCCACATTG | + |
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Preference number: 4 (lower is better) Translates to: DSQPTNGQCEVSERDLYTAVSPL*FRCPTL Trigger: CAATGTGGGGCATCGGAACCATAAGGGGGACACCGC...TGTGTAGAGGTCTCTCTCACTGACCTCACACTGTCCGTTAGTTGGTTGGCTGTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CCA 90 bp | GAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTTCCACCACAGGGAGGTaGCCTTCTTTGGCAGCCAAG | + |
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Preference number: 4 (lower is better) Translates to: ERKPYILISDSETDSQPTSTTGR*PSLAAK Trigger: CTTGGCTGCCAAAGAAGGCCACCTCCCTGTGGTGGA...AGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CCA 90 bp | AAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTAACGGAGCGGTGTCCCCCTTATaGTTCCGATGCCCCACATTG | + |
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Preference number: 4 (lower is better) Translates to: KPYILISDSETDSQPTNGAVSPL*FRCPTL Trigger: CAATGTGGGGCATCGGAACCATAAGGGGGACACCGC...TCCGTTAGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | AGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCATCTTTGGCAGCCAAGTaGAAGGGCAGGTTCCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: SERKPYILISDSETDSQPSLAAK*KGRFPS Trigger: TGAAGGGAACCTGCCCTTGCACTTGGCTGCCAAAGA...TGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CCA 90 bp | AAAACAAAGTCTCCAAGTCAGACACTGAGAATGAAAAAGGGTAAGCAAAGAAAAGGAGGTGGCCTTCTTTaGCAGCCAAGTGCAAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: KTKSPSQTLRMKKGKQRKGGGLL*QPSARA Trigger: TGCCCTTGCACTTGGCTGCCAAAGAAGGCCACCTCC...TTTTCTTTGCTTACCCTTTTTCATTCTCAGTGTCTGACTTGGAGACTTTGTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CCA 90 bp | AAACAAAGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCGGAGGTGGCCTTCTTTaGCAGCCAAGTGCAAGGGCA | + |
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Preference number: 4 (lower is better) Translates to: KQSERKPYILISDSETDSGGGLL*QPSARA Trigger: TGCCCTTGCACTTGGCTGCCAAAGAAGGCCACCTCC...GCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCTTTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | AAAACAAAGTCTCCAAGTCAGACACTGAGAATGAAAAAGGGTAAGCAAAGAAAACCCTTATGGTTCCGATaGCCCACATTGCAGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: KTKSPSQTLRMKKGKQRKPLWFR*PTLQAV Trigger: CACAGCCTGCAATGTGGGGCATCGGAACCATAAGGG...TTTTCTTTGCTTACCCTTTTTCATTCTCAGTGTCTGACTTGGAGACTTTGTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | AAACAAAGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCCCTTATGGTTCCGATaGCCCACATTGCAGGCTGTG | + |
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Preference number: 4 (lower is better) Translates to: KQSERKPYILISDSETDSPLWFR*PTLQAV Trigger: CACAGCCTGCAATGTGGGGCATCGGAACCATAAGGG...GCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCTTTGTTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | AAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTAACGGATCCCCCAACCCCATTTaGCTCCATCAGGCTAATGAC | + |
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Preference number: 4 (lower is better) Translates to: KPYILISDSETDSQPTNGSPNPI*LHQAND Trigger: GTCATTAGCCTGATGGAGGCAAATGGGGTTGGGGGA...TCCGTTAGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | AAAACAAAGTCTCCAAGTCAGACACTGAGAATGAAAAAGGGTAAGCAAAGAAAATCTTTGGCAGCCAAGTaGAAGGGCAGGTTCCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: KTKSPSQTLRMKKGKQRKSLAAK*KGRFPS Trigger: TGAAGGGAACCTGCCCTTGCACTTGGCTGCCAAAGA...TTTTCTTTGCTTACCCTTTTTCATTCTCAGTGTCTGACTTGGAGACTTTGTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR TCA 90 bp | GAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTGCTCTGGCAGCATCATaGATGACAGCAAAACCAGTT | + |
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Preference number: 4 (lower is better) Translates to: ERKPYILISDSETDSQPTALAAS*MTAKPV Trigger: AACTGGTTTTGCTGTCATTCATGATGCTGCCAGAGC...AGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | GAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTAGTGTCCAGGAAACCTaGTCTGGCAGCATCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: ERKPYILISDSETDSQPTSVQET*SGSIMN Trigger: ATTCATGATGCTGCCAGAGCAGGTTTCCTGGACACT...AGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | GAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTACATTGCAGGCTGTGTaGTTCATAAGGAACTCCACC | + |
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Preference number: 4 (lower is better) Translates to: ERKPYILISDSETDSQPTTLQAV*FIRNST Trigger: GGTGGAGTTCCTTATGAAGCACACAGCCTGCAATGT...AGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CCA 90 bp | AGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAATGTTAACATCAGCCTaGAACTCCAGCAAAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: SERKPYILISDSETDSQPMLTSA*NSSKAC Trigger: ACAGGCTTTGCTGGAGTTCCAGGCTGATGTTAACAT...TGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR TCA 90 bp | AAACAAAGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCGCTCTGGCAGCATCATaGATGACAGCAAAACCAGTT | + |
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Preference number: 4 (lower is better) Translates to: KQSERKPYILISDSETDSALAAS*MTAKPV Trigger: AACTGGTTTTGCTGTCATTCATGATGCTGCCAGAGC...GCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCTTTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR GCA 90 bp | AAACAAAGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCAGTGTCCAGGAAACCTaGTCTGGCAGCATCATGAAT | + |
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Preference number: 4 (lower is better) Translates to: KQSERKPYILISDSETDSSVQET*SGSIMN Trigger: ATTCATGATGCTGCCAGAGCAGGTTTCCTGGACACT...GCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCTTTGTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CCA 90 bp | AAAACAAAGTCTCCAAGTCAGACACTGAGAATGAAAAAGGGTAAGCAAAGAAAAATGTTAACATCAGCCTaGAACTCCAGCAAAGCCTGT | + |
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Preference number: 4 (lower is better) Translates to: KTKSPSQTLRMKKGKQRKMLTSA*NSSKAC Trigger: ACAGGCTTTGCTGGAGTTCCAGGCTGATGTTAACAT...TTTTCTTTGCTTACCCTTTTTCATTCTCAGTGTCTGACTTGGAGACTTTGTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR TCA 90 bp | GAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTCTCCCAAATCCATTTTaGGCGTTGACGTTTACATTA | + |
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Preference number: 4 (lower is better) Translates to: ERKPYILISDSETDSQPTLPNPF*ALTFTL Trigger: TAATGTAAACGTCAACGCTCAAAATGGATTTGGGAG...AGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR TCA 90 bp | AAACAAAGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCTCCCAAATCCATTTTaGGCGTTGACGTTTACATTA | + |
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Preference number: 4 (lower is better) Translates to: KQSERKPYILISDSETDSLPNPF*ALTFTL Trigger: TAATGTAAACGTCAACGCTCAAAATGGATTTGGGAG...GCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCTTTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS CCA 90 bp | ACATTGCAGGCTGTGTGCTTCATAAGGAACTCCACCACAGGGAGGTaGCCTTCTTTGGCAGCCAAGTGCAAGGGCAGGTTCCCTTCATTA | + |
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Preference number: 5 (lower is better) Translates to: TLQAVCFIRNSTTGR*PSLAAKCKGRFPSL Trigger: TAATGAAGGGAACCTGCCCTTGCACTTGGCTGCCAAAGAAGGCCACCTCCCTGTGGTGGAGTTCCTTATGAAGCACACAGCCTGCAATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS GCA 90 bp | ATAAGGAACTCCACCACAGGGAGGTGGCCTTCTTTGGCAGCCAAGTaGAAGGGCAGGTTCCCTTCATTATCTTCAATGTTAACATCAGCC | + |
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Preference number: 5 (lower is better) Translates to: IRNSTTGRWPSLAAK*KGRFPSLSSMLTSA Trigger: GGCTGATGTTAACATTGAAGATAATGAAGGGAACCTGCCCTTGCACTTGGCTGCCAAAGAAGGCCACCTCCCTGTGGTGGAGTTCCTTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS TCA 90 bp | AGCAAAGCCTGTACAGTGTCCAGGAAACCTGCTCTGGCAGCATCATaGATGACAGCAAAACCAGTTCCATCTTTCAAATTGGGATTAGCA | + |
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Preference number: 5 (lower is better) Translates to: SKACTVSRKPALAAS*MTAKPVPSFKLGLA Trigger: TGCTAATCCCAATTTGAAAGATGGAACTGGTTTTGCTGTCATTCATGATGCTGCCAGAGCAGGTTTCCTGGACACTGTACAGGCTTTGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CAA 90 bp | AAAACAAAGTCTCCAAGTCAGACACTGAGAATGAAAAAGGGTAAGCAAAGAAAATTCCGATGCCCCACATaGCAGGCTGTGTGCTTCATA | + |
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Preference number: 5 (lower is better) Translates to: KTKSPSQTLRMKKGKQRKFRCPT*QAVCFI Trigger: TATGAAGCACACAGCCTGCAATGTGGGGCATCGGAA...TTTTCTTTGCTTACCCTTTTTCATTCTCAGTGTCTGACTTGGAGACTTTGTTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CAA 90 bp | GAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTGTTCCATCTTTCAAATaGGGATTAGCACCTCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: ERKPYILISDSETDSQPTVPSFK*GLAPLR Trigger: CCTCAGAGGTGCTAATCCCAATTTGAAAGATGGAAC...AGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CAA 90 bp | AAACAAAGCGAAAGGAAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCGTTCCATCTTTCAAATaGGGATTAGCACCTCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: KQSERKPYILISDSETDSVPSFK*GLAPLR Trigger: CCTCAGAGGTGCTAATCCCAATTTGAAAGATGGAAC...GCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTTCCTTTCGCTTTGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CAA 90 bp | AAACCCTATATTTTAATAAGTGATAGTGAAACGGACAGCCAACCAACTAACGGATCTCCCAAATCCATTTaGAGCGTTGACGTTTACATT | + |
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Preference number: 5 (lower is better) Translates to: KPYILISDSETDSQPTNGSPKSI*SVDVYI Trigger: AATGTAAACGTCAACGCTCAAAATGGATTTGGGAGA...TCCGTTAGTTGGTTGGCTGTCCGTTTCACTATCACTTATTAAAATATAGGGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS-3UTR CAA 90 bp | AAAACAAAGTCTCCAAGTCAGACACTGAGAATGAAAAAGGGTAAGCAAAGAAAATCTCCCAAATCCATTTaGAGCGTTGACGTTTACATT | + |
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Preference number: 5 (lower is better) Translates to: KTKSPSQTLRMKKGKQRKSPKSI*SVDVYI Trigger: AATGTAAACGTCAACGCTCAAAATGGATTTGGGAGA...TTTTCTTTGCTTACCCTTTTTCATTCTCAGTGTCTGACTTGGAGACTTTGTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS CAA 90 bp | GCCAAGTCGAAGGCGGTGTCCCCCTTATGGTTCCGATGCCCCACATaGCAGGCTGTGTGCTTCATAAGGAACTCCACCACAGGGAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: AKSKAVSPLWFRCPT*QAVCFIRNSTTGRW Trigger: CCACCTCCCTGTGGTGGAGTTCCTTATGAAGCACACAGCCTGCAATGTGGGGCATCGGAACCATAAGGGGGACACCGCCTTCGACTTGGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS CCA 72 bp | GCTGTGTGCTTCATAAGGAACTCCACCACAGGGAGGTaGCCTTCTTTGGCAGCCAAGTGCAAGGGCAGGTTC | + |
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Preference number: 6 (lower is better) Translates to: AVCFIRNSTTGR*PSLAAKCKGRF Trigger: GAACCTGCCCTTGCACTTGGCTGCCAAAGAAGGCCACCTCCCTGTGGTGGAGTTCCTTATGAAGCACACAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS CAA 72 bp | AAGGCGGTGTCCCCCTTATGGTTCCGATGCCCCACATaGCAGGCTGTGTGCTTCATAAGGAACTCCACCACA | + |
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Preference number: 6 (lower is better) Translates to: KAVSPLWFRCPT*QAVCFIRNSTT Trigger: TGTGGTGGAGTTCCTTATGAAGCACACAGCCTGCAATGTGGGGCATCGGAACCATAAGGGGGACACCGCCTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS TCA 72 bp | TGTACAGTGTCCAGGAAACCTGCTCTGGCAGCATCATaGATGACAGCAAAACCAGTTCCATCTTTCAAATTG | + |
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Preference number: 6 (lower is better) Translates to: CTVSRKPALAAS*MTAKPVPSFKL Trigger: CAATTTGAAAGATGGAACTGGTTTTGCTGTCATTCATGATGCTGCCAGAGCAGGTTTCCTGGACACTGTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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| CDS CAA 90 bp | ATTTCCAAGTTTCATAACCTGCAGCGCAGTTCTCCCAAATCCATTTaGAGCGTTGACGTTTACATTATTTTGCAACAAACTAGTAAGTTG | + |
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Preference number: 6 (lower is better) Translates to: ISKFHNLQRSSPKSI*SVDVYIILQQTSKL Trigger: CAACTTACTAGTTTGTTGCAAAATAATGTAAACGTCAACGCTCAAAATGGATTTGGGAGAACTGCGCTGCAGGTTATGAAACTTGGAAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063531.5 ENSMUST00000097921.10 |
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