Pregenerated sensors for CDKN2B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000073802Ensembl transcript IDs: ENSMUST00000097981.6
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTTGTGGAGATCCAAGAATTTCCCTTGCTATTTTACACCGCGTCCTaGAAGGTAGAGGGCCCGGGAACTTCATACAATACTAAATCTCCT | + |
|
Preference number: 1 (lower is better) Translates to: LVEIQEFPLLFYTAS*KVEGPGTSYNTKSP Trigger: AGGAGATTTAGTATTGTATGAAGTTCCCGGGCCCTCTACCTTTCAGGACGCGGTGTAAAATAGCAAGGGAAATTCTTGGATCTCCACAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR GCA 90 bp | CTGGGTAGGGTTCAAGTTTTGGAAGGCCTGCAGGCTGGGCGCTGGTGGCCCTCTGGAGAAAGAAGTCCTTaGGGAAGGCGGAGGGAACCC | + |
|
Preference number: 2 (lower is better) Translates to: LGRVQVLEGLQAGRWWPSGERSP*GRRREP Trigger: GGGTTCCCTCCGCCTTCCGCAAGGACTTCTTTCTCC...AGAGGGCCACCAGCGCCCAGCCTGCAGGCCTTCCAAAACTTGAACCCTACCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR CCA 90 bp | TCTCCAGTTCCCCTGCAGCAGCAGCTTGTGGAGATCCAAGAATTTCCCTTGCTACTGCAGGCTGGGCGCTaGTGGCCCTCTTCGTGCTTG | + |
|
Preference number: 2 (lower is better) Translates to: SPVPLQQQLVEIQEFPLLLQAGR*WPSSCL Trigger: CAAGCACGAAGAGGGCCACCAGCGCCCAGCCTGCAG...TAGCAAGGGAAATTCTTGGATCTCCACAAGCTGCTGCTGCAGGGGAACTGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR TCA 90 bp | ACCCACCCAAATGTCAAACAAATGTCAAGCTGTCTCCAGTTCCCCTGCAGCAGCCCCTTGGCTTCAAGGTaGGGCTCAAGGACCAGATCC | + |
|
Preference number: 2 (lower is better) Translates to: THPNVKQMSSCLQFPCSSPLASR*GSRTRS Trigger: GGATCTGGTCCTTGAGCCTCACCTTGAAGCCAAGGG...GCTGCTGCAGGGGAACTGGAGACAGCTTGACATTTGTTTGACATTTGGGTGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR GCA 90 bp | TCTCCAGTTCCCCTGCAGCAGCAGCTTGTGGAGATCCAAGAATTTCCCTTGCTAGGCCCTCTTCGTGCTTaGAGTCTTCCTAGATGGGGC | + |
|
Preference number: 2 (lower is better) Translates to: SPVPLQQQLVEIQEFPLLGPLRA*SLPRWG Trigger: GCCCCATCTAGGAAGACTGCAAGCACGAAGAGGGCC...TAGCAAGGGAAATTCTTGGATCTCCACAAGCTGCTGCTGCAGGGGAACTGGAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR GCA 90 bp | CCTGCTACCACTACAATTCATCACTGGGCTTTGTGGACGTTGAGTCTGTCAGAATGTCTCCAGTTCCCCTaGAGCAGCAGCTTGTGGAGA | + |
|
Preference number: 2 (lower is better) Translates to: PATTTIHHWALWTLSLSECLQFP*SSSLWR Trigger: TCTCCACAAGCTGCTGCTGCAGGGGAACTGGAGACA...TTCTGACAGACTCAACGTCCACAAAGCCCAGTGATGAATTGTAGTGGTAGCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR CCA 90 bp | ACTGCACCCACCCAAATGTCAAACAAATGTCAAGCTGTCTCCAGTTCCCCTGCACTTCCTAGATGGGGCTaGGGAGAAAGAAGTCCTTGC | + |
|
Preference number: 2 (lower is better) Translates to: TAPTQMSNKCQAVSSSPALPRWG*GERSPC Trigger: GCAAGGACTTCTTTCTCCCCAGCCCCATCTAGGAAG...TGCAGGGGAACTGGAGACAGCTTGACATTTGTTTGACATTTGGGTGGGTGCAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR TCA 90 bp | GGTGATCCCCTTGGCTTCAAGGTGAGGCTCAAGGACCAGATCCAGCTGCAGAAAGTAGGAAGTTATTTCTaGTTGGCTTTGTCTTACTGG | + |
|
Preference number: 2 (lower is better) Translates to: GDPLGFKVRLKDQIQLQKVGSYF*LALSYW Trigger: CCAGTAAGACAAAGCCAATCAGAAATAACTTCCTAC...TTTCTGCAGCTGGATCTGGTCCTTGAGCCTCACCTTGAAGCCAAGGGGATCACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR CCA 90 bp | GTTCCCCTGCAGCAGCAGCTTGTGGAGATCCAAGAATTTCCCTTGCTATTTTACTGCAGTCTTCCTAGATaGGGCTGGGGAGAAAGAAGT | + |
|
Preference number: 2 (lower is better) Translates to: VPLQQQLVEIQEFPLLFYCSLPR*GWGERS Trigger: ACTTCTTTCTCCCCAGCCCCATCTAGGAAGACTGCA...GTAAAATAGCAAGGGAAATTCTTGGATCTCCACAAGCTGCTGCTGCAGGGGAAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR GCA 90 bp | GAATCCCCACACATGACAGTACATAAAACCACTTCAGTGCCTCTCATCTACTCTAGCCTGTGGATCATCTaGATTTTCAGTTCACAGGGG | + |
|
Preference number: 2 (lower is better) Translates to: ESPHMTVHKTTSVPLIYSSLWII*IFSSQG Trigger: CCCCTGTGAACTGAAAATGCAGATGATCCACAGGCT...AGAGTAGATGAGAGGCACTGAAGTGGTTTTATGTACTGTCATGTGTGGGGATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR CCA 90 bp | CCTGCTACCACTACAATTCATCACTGGGCTTTGTGGACGTTGAGTCTGTCAGAATTCCCATTTAGCCTGTaGATCATCTGCATTTTCAGT | + |
|
Preference number: 2 (lower is better) Translates to: PATTTIHHWALWTLSLSEFPFSL*IICIFS Trigger: ACTGAAAATGCAGATGATCCACAGGCTAAATGGGAA...TTCTGACAGACTCAACGTCCACAAAGCCCAGTGATGAATTGTAGTGGTAGCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR GCA 72 bp | GCCTGCAGGCTGGGCGCTGGTGGCCCTCTTCGTGCTTaGAGTCTTCCTAGATGGGGCTGGGGAGAAAGAAGT | + |
|
Preference number: 3 (lower is better) Translates to: ACRLGAGGPLRA*SLPRWGWGERS Trigger: ACTTCTTTCTCCCCAGCCCCATCTAGGAAGACTGCAAGCACGAAGAGGGCCACCAGCGCCCAGCCTGCAGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR CCA 72 bp | GCTGGTGGCCCTCTTCGTGCTTGCAGTCTTCCTAGATaGGGCTGGGGAGAAAGAAGTCCTTGCGGAAGGCGG | + |
|
Preference number: 3 (lower is better) Translates to: AGGPLRACSLPR*GWGERSPCGRR Trigger: CCGCCTTCCGCAAGGACTTCTTTCTCCCCAGCCCCATCTAGGAAGACTGCAAGCACGAAGAGGGCCACCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR GCA 72 bp | TTGTCTTACTGGGTAGGGTTCAAGTTTTGGAAGGCCTaGAGGCTGGGCGCTGGTGGCCCTCTTCGTGCTTGC | + |
|
Preference number: 3 (lower is better) Translates to: LSYWVGFKFWKA*RLGAGGPLRAC Trigger: GCAAGCACGAAGAGGGCCACCAGCGCCCAGCCTGCAGGCCTTCCAAAACTTGAACCCTACCCAGTAAGACAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR TCA 72 bp | GGCCCGGGAACTTCATACAATACTAAATCTCCTTGGTaGTCCCCTTGGCTTCAAGGTGAGGCTCAAGGACCA | + |
|
Preference number: 3 (lower is better) Translates to: GPGTSYNTKSPW*SPWLQGEAQGP Trigger: TGGTCCTTGAGCCTCACCTTGAAGCCAAGGGGATCACCAAGGAGATTTAGTATTGTATGAAGTTCCCGGGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR TCA 72 bp | CTACCACTACAATTCATCACTGGGCTTTGTGGACGTTaGGTCTGTCAGAATCCAGGCATCAAGGCAACTGTG | + |
|
Preference number: 3 (lower is better) Translates to: LPLQFITGLCGR*VCQNPGIKATV Trigger: CACAGTTGCCTTGATGCCTGGATTCTGACAGACTCAACGTCCACAAAGCCCAGTGATGAATTGTAGTGGTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR GCA 72 bp | AATGTCAAACAAATGTCAAGCTGTCTCCAGTTCCCCTaGAGCAGCAGCTTGTGGAGATCCAAGAATTTCCCT | + |
|
Preference number: 3 (lower is better) Translates to: NVKQMSSCLQFP*SSSLWRSKNFP Trigger: AGGGAAATTCTTGGATCTCCACAAGCTGCTGCTGCAGGGGAACTGGAGACAGCTTGACATTTGTTTGACATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR GCA 72 bp | TACTCTCCAGGTTTCCCATTTAGCCTGTGGATCATCTaGATTTTCAGTTCACAGGGGAAGGTACTGACTGCA | + |
|
Preference number: 3 (lower is better) Translates to: YSPGFPFSLWII*IFSSQGKVLTA Trigger: TGCAGTCAGTACCTTCCCCTGTGAACTGAAAATGCAGATGATCCACAGGCTAAATGGGAAACCTGGAGAGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR TCA 72 bp | ATCCAAGAATTTCCCTTGCTATTTTACACCGCGTCCTaGAAGGTAGAGGGCCCGGGAACTTCATACAATACT | + |
|
Preference number: 3 (lower is better) Translates to: IQEFPLLFYTAS*KVEGPGTSYNT Trigger: AGTATTGTATGAAGTTCCCGGGCCCTCTACCTTTCAGGACGCGGTGTAAAATAGCAAGGGAAATTCTTGGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR-3UTR CAA 90 bp | CTGTCAGAATCCAGGCATCAAGGCAACTGTGGGTCACAGTTTAGTGGAAATTTATCTATAAATGCCATTTaGCAGGTGAATCCCCACACA | + |
|
Preference number: 3 (lower is better) Translates to: LSESRHQGNCGSQFSGNLSINAI*QVNPHT Trigger: TGTGTGGGGATTCACCTGCAAAATGGCATTTATAGA...TAAATTTCCACTAAACTGTGACCCACAGTTGCCTTGATGCCTGGATTCTGACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR TCA 72 bp | GTCTTCAATTTCACTATTTCCTTGTCGAGCTGGAGGTaGCTTCTCAGTTTCTATAAATGCCATTTTGCAGGT | + |
|
Preference number: 3 (lower is better) Translates to: VFNFTISLSSWR*LLSFYKCHFAG Trigger: ACCTGCAAAATGGCATTTATAGAAACTGAGAAGTCACCTCCAGCTCGACAAGGAAATAGTGAAATTGAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS-3UTR GCA 90 bp | AAGTTTTGGAAGGCCTGCAGGCTGGGCGCTGGTGGCCCTCTTCGTGCTTGCAGTCAGGGCGTTGGGATCTaGGCCGGCTTCCAGGAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: KFWKACRLGAGGPLRACSQGVGI*AGFQEL Trigger: CAGCTCCTGGAAGCCGGCGCAGATCCCAACGCCCTG...ACTGCAAGCACGAAGAGGGCCACCAGCGCCCAGCCTGCAGGCCTTCCAAAACTT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS-3UTR CCA 90 bp | GCTTGCAGTCTTCCTAGATGGGGCTGGGGAGAAAGAAGTCCTTGCGGAAGGCGGCATCATGACCTGGATTaGGCGCCTCCCGAAGCGGTT | + |
|
Preference number: 4 (lower is better) Translates to: ACSLPRWGWGERSPCGRRHHDLD*APPEAV Trigger: AACCGCTTCGGGAGGCGCCCAATCCAGGTCATGATG...CCGCCTTCCGCAAGGACTTCTTTCTCCCCAGCCCCATCTAGGAAGACTGCAAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS-3UTR CCA 90 bp | CCAAGAATTTCCCTTGCTATTTTACACCGCGTCCTGAAAGGTAGAGGGCCCGGGAGCGGTTCAGGGCGTTaGGATCTGCGCCGGCTTCCA | + |
|
Preference number: 4 (lower is better) Translates to: PRISLAILHRVLKGRGPGSGSGR*DLRRLP Trigger: TGGAAGCCGGCGCAGATCCCAACGCCCTGAACCGCT...CCCGGGCCCTCTACCTTTCAGGACGCGGTGTAAAATAGCAAGGGAAATTCTTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS-3UTR CCA 90 bp | ACCCACCCAAATGTCAAACAAATGTCAAGCTGTCTCCAGTTCCCCTGCAGCAGCCAGGGTCGGCGCAGTTaGGTTCTGCTCCGTGGAGCA | + |
|
Preference number: 4 (lower is better) Translates to: THPNVKQMSSCLQFPCSSQGRRS*VLLRGA Trigger: TGCTCCACGGAGCAGAACCCAACTGCGCCGACCCTG...GCTGCTGCAGGGGAACTGGAGACAGCTTGACATTTGTTTGACATTTGGGTGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR CAA 72 bp | CTGATTGGCTTTGTCTTACTGGGTAGGGTTCAAGTTTaGGAAGGCCTGCAGGCTGGGCGCTGGTGGCCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LIGFVLLGRVQV*EGLQAGRWWPS Trigger: AGAGGGCCACCAGCGCCCAGCCTGCAGGCCTTCCAAAACTTGAACCCTACCCAGTAAGACAAAGCCAATCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS-3UTR GCA 90 bp | CTGTCAGAATCCAGGCATCAAGGCAACTGTGGGTCACAGTTTAGTGGAAATTTACCGGCTTCCAGGAGCTaGCGCACCGTCTCCACTTGC | + |
|
Preference number: 4 (lower is better) Translates to: LSESRHQGNCGSQFSGNLPASRS*RTVSTC Trigger: GCAAGTGGAGACGGTGCGGCAGCTCCTGGAAGCCGG...TAAATTTCCACTAAACTGTGACCCACAGTTGCCTTGATGCCTGGATTCTGACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| 3UTR CAA 72 bp | GCTACCACTACAATTCATCACTGGGCTTTGTGGACGTaGAGTCTGTCAGAATCCAGGCATCAAGGCAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: ATTTIHHWALWT*SLSESRHQGNC Trigger: ACAGTTGCCTTGATGCCTGGATTCTGACAGACTCAACGTCCACAAAGCCCAGTGATGAATTGTAGTGGTAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS GCA 90 bp | GACCTGGATTGGGCGCCTCCCGAAGCGGTTCAGGGCGTTGGGATCTaGGCCGGCTTCCAGGAGCTGCCGCACCGTCTCCACTTGCCCCCG | + |
|
Preference number: 5 (lower is better) Translates to: DLDWAPPEAVQGVGI*AGFQELPHRLHLPP Trigger: CGGGGGCAAGTGGAGACGGTGCGGCAGCTCCTGGAAGCCGGCGCAGATCCCAACGCCCTGAACCGCTTCGGGAGGCGCCCAATCCAGGTC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS GCA 90 bp | TCTCCAGTGGCAGCGTGCAGATACCTCGCAATGTCACGGTGGCCCTaGTCTTCAGCCAAGTCTACCGGCAGGCGGCCCCAGGCGTCACAC | + |
|
Preference number: 5 (lower is better) Translates to: SPVAACRYLAMSRWP*SSAKSTGRRPQASH Trigger: GTGTGACGCCTGGGGCCGCCTGCCGGTAGACTTGGCTGAAGAGCAGGGCCACCGTGACATTGCGAGGTATCTGCACGCTGCCACTGGAGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS-3UTR CAA 90 bp | ACTGCACCCACCCAAATGTCAAACAAATGTCAAGCTGTCTCCAGTTCCCCTGCAGCAGGGTCGGCGCAGTaGGGTTCTGCTCCGTGGAGC | + |
|
Preference number: 5 (lower is better) Translates to: TAPTQMSNKCQAVSSSPAAGSAQ*GSAPWS Trigger: GCTCCACGGAGCAGAACCCAACTGCGCCGACCCTGC...TGCAGGGGAACTGGAGACAGCTTGACATTTGTTTGACATTTGGGTGGGTGCAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS-3UTR CAA 90 bp | CCAGTTCCCCTGCAGCAGCAGCTTGTGGAGATCCAAGAATTTCCCTTGCTATTTAAGCGGTTCAGGGCGTaGGGATCTGCGCCGGCTTCC | + |
|
Preference number: 5 (lower is better) Translates to: PVPLQQQLVEIQEFPLLFKRFRA*GSAPAS Trigger: GGAAGCCGGCGCAGATCCCAACGCCCTGAACCGCTT...AAATAGCAAGGGAAATTCTTGGATCTCCACAAGCTGCTGCTGCAGGGGAACTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||
| CDS GCA 72 bp | TGGGCGCCTCCCGAAGCGGTTCAGGGCGTTGGGATCTaGGCCGGCTTCCAGGAGCTGCCGCACCGTCTCCAC | + |
|
Preference number: 6 (lower is better) Translates to: WAPPEAVQGVGI*AGFQELPHRLH Trigger: GTGGAGACGGTGCGGCAGCTCCTGGAAGCCGGCGCAGATCCCAACGCCCTGAACCGCTTCGGGAGGCGCCCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000097981.6 |
||