Pregenerated sensors for CDKN2AIPNL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020392Ensembl transcript IDs: ENSMUST00000102763.5, ENSMUST00000127136.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCGCATCTGAGAAGACAAGGCTCTAGCTCACTGAGCCCAGAGCTCTaGCCTTCACCAGTCACCACCTTGCCACTTCCCTCTGACAGGCAG | + |
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Preference number: 1 (lower is better) Translates to: PHLRRQGSSSLSPEL*PSPVTTLPLPSDRQ Trigger: CTGCCTGTCAGAGGGAAGTGGCAAGGTGGTGACTGGTGAAGGGCAGAGCTCTGGGCTCAGTGAGCTAGAGCCTTGTCTTCTCAGATGCGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR TCA 90 bp | TTTCCTACACAAAGGTCCCTGAGCCCAGCAGTGGGGGTGCTCCAGTaGCACAGCTGGTTAGTGCACGGTCCTTTGGTGGCCATCAGTGGT | + |
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Preference number: 1 (lower is better) Translates to: FPTQRSLSPAVGVLQ*HSWLVHGPLVAISG Trigger: ACCACTGATGGCCACCAAAGGACCGTGCACTAACCAGCTGTGTCACTGGAGCACCCCCACTGCTGGGCTCAGGGACCTTTGTGTAGGAAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR GCA 90 bp | CCCCACTGTCTTTCTGGCCACAATGGGCCTGCCGTTGATGAGTCCTaGTGTGTACACTGCTCCACAGCTGCCCACTGCTCAGTTATCTTA | + |
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Preference number: 1 (lower is better) Translates to: PHCLSGHNGPAVDES*CVHCSTAAHCSVIL Trigger: TAAGATAACTGAGCAGTGGGCAGCTGTGGAGCAGTGTACACAGCAGGACTCATCAACGGCAGGCCCATTGTGGCCAGAAAGACAGTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR TCA 90 bp | TGTGTACACTGCTCCACAGCTGCCCACTGCTCAGTTATCTTATGGTaGCTAAATACAGGGAACCAGAAGCGGGGTCAGGTGGAATGCAGG | + |
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Preference number: 1 (lower is better) Translates to: CVHCSTAAHCSVILW*LNTGNQKRGQVECR Trigger: CCTGCATTCCACCTGACCCCGCTTCTGGTTCCCTGTATTTAGTCACCATAAGATAACTGAGCAGTGGGCAGCTGTGGAGCAGTGTACACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR GCA 90 bp | TGTACATTGCCTCCTACCTATGCGCTAGCTCTGCTACTTCAAGCCTaGGACATGATTACCATTTCCTACACAAAGGTCCCTGAGCCCAGC | + |
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Preference number: 1 (lower is better) Translates to: CTLPPTYALALLLQA*DMITISYTKVPEPS Trigger: GCTGGGCTCAGGGACCTTTGTGTAGGAAATGGTAATCATGTCGCAGGCTTGAAGTAGCAGAGCTAGCGCATAGGTAGGAGGCAATGTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CCA 90 bp | GTATTTTACAGCAATCCTGGAAGAATGAAGATGTCTTTGAAGCTATaGGCCCCGTCCTCTTCCAGTCTAGCTGCCTCTATGCTGCAAATG | + |
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Preference number: 1 (lower is better) Translates to: VFYSNPGRMKMSLKL*APSSSSLAASMLQM Trigger: CATTTGCAGCATAGAGGCAGCTAGACTGGAAGAGGACGGGGCCCATAGCTTCAAAGACATCTTCATTCTTCCAGGATTGCTGTAAAATAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR TCA 90 bp | ATGCTGGCACATGGGCATCTAGTGCCTAGAAACCATCTGGTTGGTTaGACAAAACCATATATGCTTCCAGTGATTTTTAAATCTATTTTT | + |
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Preference number: 1 (lower is better) Translates to: MLAHGHLVPRNHLVG*TKPYMLPVIFKSIF Trigger: AAAAATAGATTTAAAAATCACTGGAAGCATATATGGTTTTGTTCAACCAACCAGATGGTTTCTAGGCACTAGATGCCCATGTGCCAGCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CAA 90 bp | GCTAAGGCAGACCCCACTGTCTTTCTGGCCACAATGGGCCTGCCGTaGATGAGTCCTGCTGTGTACACTGCTCCACAGCTGCCCACTGCT | + |
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Preference number: 2 (lower is better) Translates to: AKADPTVFLATMGLP*MSPAVYTAPQLPTA Trigger: AGCAGTGGGCAGCTGTGGAGCAGTGTACACAGCAGGACTCATCAACGGCAGGCCCATTGTGGCCAGAAAGACAGTGGGGTCTGCCTTAGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CAA 90 bp | TCTAGCTCACTGAGCCCAGAGCTCTGCCCTTCACCAGTCACCACCTaGCCACTTCCCTCTGACAGGCAGTCACTCATTGCCTGGAGAAGC | + |
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Preference number: 2 (lower is better) Translates to: SSSLSPELCPSPVTT*PLPSDRQSLIAWRS Trigger: GCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGGTGGTGACTGGTGAAGGGCAGAGCTCTGGGCTCAGTGAGCTAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR GCA 90 bp | ACCACCTTGCCACTTCCCTCTGACAGGCAGTCACTCATTGCCTGGAGAAGCTTGCGGGGTCAGGTGGAATaGAGGACCGCACTGCAATCC | + |
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Preference number: 2 (lower is better) Translates to: TTLPLPSDRQSLIAWRSLRGQVE*RTALQS Trigger: GGATTGCAGTGCGGTCCTGCATTCCACCTGACCCCG...CAAGCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGGTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CAA 90 bp | TCCTCTTCCAGTCTAGCTGCCTCTATGCTGCAAATGCCAGGAATCTaGAGAGCTGCCAATGTTCAGTCATCTTCACCCTGGCCTCCTTTC | + |
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Preference number: 2 (lower is better) Translates to: SSSSLAASMLQMPGI*RAANVQSSSPWPPF Trigger: GAAAGGAGGCCAGGGTGAAGATGACTGAACATTGGCAGCTCTCAAGATTCCTGGCATTTGCAGCATAGAGGCAGCTAGACTGGAAGAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR-3UTR TCA 90 bp | CCAAGGTATCGAATCAATGGTCACTGGGGACTGGAACAGAATCCACATAAAAATCTACACAAAGGTCCCTaGGCCCAGCAGTGGGGGTGC | + |
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Preference number: 2 (lower is better) Translates to: PRYRINGHWGLEQNPHKNLHKGP*AQQWGC Trigger: GCACCCCCACTGCTGGGCTCAGGGACCTTTGTGTAG...ATTTTTATGTGGATTCTGTTCCAGTCCCCAGTGACCATTGATTCGATACCTTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR GCA 90 bp | CCTTGCCACTTCCCTCTGACAGGCAGTCACTCATTGCCTGGAGAAGCTTGTCCAAGGAATCTTGAGAGCTaGCAATGTTCAGTCATCTTC | + |
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Preference number: 2 (lower is better) Translates to: PCHFPLTGSHSLPGEACPRNLES*QCSVIF Trigger: GAAGATGACTGAACATTGGCAGCTCTCAAGATTCCT...TGGACAAGCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR GCA 90 bp | TTGAAGCTATGGGCCCCGTCCTCTTCCAGTCTAGCTGCCTCTATGCTGCAAATGAGGAATCTTGAGAGCTaGCAATGTTCAGTCATCTTC | + |
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Preference number: 2 (lower is better) Translates to: LKLWAPSSSSLAASMLQMRNLES*QCSVIF Trigger: GAAGATGACTGAACATTGGCAGCTCTCAAGATTCCT...CATTTGCAGCATAGAGGCAGCTAGACTGGAAGAGGACGGGGCCCATAGCTTCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR-3UTR TCA 90 bp | GGAAGAATGAAGATGTCTTTGAAGCTATGGGCCCCGTCCTCTTCCAGTCTAGCTAAATGCCAGGAATCTTaGGAGCTGCCAATGTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: GRMKMSLKLWAPSSSSLAKCQES*ELPMFS Trigger: ACTGAACATTGGCAGCTCTCAAGATTCCTGGCATTT...AGCTAGACTGGAAGAGGACGGGGCCCATAGCTTCAAAGACATCTTCATTCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR CAA 90 bp | ACATCTCTAGCCTCAGTGAGCTGTAAAATGAGGCTGGATGCTTTTTaGTACATTGCCTCCTACCTATGCGCTAGCTCTGCTACTTCAAGC | + |
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Preference number: 2 (lower is better) Translates to: TSLASVSCKMRLDAF*YIASYLCASSATSS Trigger: GCTTGAAGTAGCAGAGCTAGCGCATAGGTAGGAGGCAATGTACAAAAAAGCATCCAGCCTCATTTTACAGCTCACTGAGGCTAGAGATGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR TCA 90 bp | TATCGAATCAATGGTCACTGGGGACTGGAACAGAATCCACATAAAAATGTGGCTAAATGCCAGGAATCTTaGGAGCTGCCAATGTTCAGT | + |
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Preference number: 2 (lower is better) Translates to: YRINGHWGLEQNPHKNVAKCQES*ELPMFS Trigger: ACTGAACATTGGCAGCTCTCAAGATTCCTGGCATTT...AGCCACATTTTTATGTGGATTCTGTTCCAGTCCCCAGTGACCATTGATTCGATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CAA 90 bp | CACCTGTCATTATTATATCAACATAAAAGGCATTTCAAACAAAGTTaGGCTTGGACAATCCTGATGAAATTTCTGAGAGTTCGCCATGTA | + |
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Preference number: 2 (lower is better) Translates to: HLSLLYQHKRHFKQS*AWTILMKFLRVRHV Trigger: TACATGGCGAACTCTCAGAAATTTCATCAGGATTGTCCAAGCCAAACTTTGTTTGAAATGCCTTTTATGTTGATATAATAATGACAGGTG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR GCA 72 bp | CTTTCTGGCCACAATGGGCCTGCCGTTGATGAGTCCTaGTGTGTACACTGCTCCACAGCTGCCCACTGCTCA | + |
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Preference number: 3 (lower is better) Translates to: LSGHNGPAVDES*CVHCSTAAHCS Trigger: TGAGCAGTGGGCAGCTGTGGAGCAGTGTACACAGCAGGACTCATCAACGGCAGGCCCATTGTGGCCAGAAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR TCA 72 bp | CTGCCCTTCACCAGTCACCACCTTGCCACTTCCCTCTaGCAGGCAGTCACTCATTGCCTGGAGAAGCTTGTC | + |
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Preference number: 3 (lower is better) Translates to: LPFTSHHLATSL*QAVTHCLEKLV Trigger: GACAAGCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGGTGGTGACTGGTGAAGGGCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR GCA 72 bp | AGAAGACAAGGCTCTAGCTCACTGAGCCCAGAGCTCTaGCCTTCACCAGTCACCACCTTGCCACTTCCCTCT | + |
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Preference number: 3 (lower is better) Translates to: RRQGSSSLSPEL*PSPVTTLPLPS Trigger: AGAGGGAAGTGGCAAGGTGGTGACTGGTGAAGGGCAGAGCTCTGGGCTCAGTGAGCTAGAGCCTTGTCTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR TCA 72 bp | CTGCGACATGATTACCATTTCCTACACAAAGGTCCCTaGGCCCAGCAGTGGGGGTGCTCCAGTGACACAGCT | + |
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Preference number: 3 (lower is better) Translates to: LRHDYHFLHKGP*AQQWGCSSDTA Trigger: AGCTGTGTCACTGGAGCACCCCCACTGCTGGGCTCAGGGACCTTTGTGTAGGAAATGGTAATCATGTCGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR GCA 72 bp | CAGGGGGTTCAGGTAGAAATAAGGACACAGAGGATCTaGCTTGGCTCAGGACAAACATGGGTGGGGTACGGC | + |
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Preference number: 3 (lower is better) Translates to: QGVQVEIRTQRI*LGSGQTWVGYG Trigger: GCCGTACCCCACCCATGTTTGTCCTGAGCCAAGGCAGATCCTCTGTGTCCTTATTTCTACCTGAACCCCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR GCA 72 bp | CTAAATACAGGGAACCAGAAGCGGGGTCAGGTGGAATaGAGGACCGCACTGCAATCCAGACGCGGTATGCAA | + |
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Preference number: 3 (lower is better) Translates to: LNTGNQKRGQVE*RTALQSRRGMQ Trigger: TTGCATACCGCGTCTGGATTGCAGTGCGGTCCTGCATTCCACCTGACCCCGCTTCTGGTTCCCTGTATTTAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR CAA 90 bp | CTATGGGCCCCGTCCTCTTCCAGTCTAGCTGCCTCTATGCTGCAAATGCCAGGAAGAATGAAGATGTCTTaGAAGCTATGGGCCCCGTCC | + |
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Preference number: 3 (lower is better) Translates to: LWAPSSSSLAASMLQMPGRMKMS*KLWAPS Trigger: GGACGGGGCCCATAGCTTCAAAGACATCTTCATTCT...TCCTGGCATTTGCAGCATAGAGGCAGCTAGACTGGAAGAGGACGGGGCCCATAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR GCA 72 bp | AATGGGCCTGCCGTTGATGAGTCCTGCTGTGTACACTaGTCCACAGCTGCCCACTGCTCAGTTATCTTATGG | + |
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Preference number: 3 (lower is better) Translates to: NGPAVDESCCVH*STAAHCSVILW Trigger: CCATAAGATAACTGAGCAGTGGGCAGCTGTGGAGCAGTGTACACAGCAGGACTCATCAACGGCAGGCCCATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR CAA 90 bp | CTGAGAAGACAAGGCTCTAGCTCACTGAGCCCAGAGCTCTGCCCTTCACCAGTCCAAATGCCAGGAATCTaGAGAGCTGCCAATGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: LRRQGSSSLSPELCPSPVQMPGI*RAANVQ Trigger: CTGAACATTGGCAGCTCTCAAGATTCCTGGCATTTG...GACTGGTGAAGGGCAGAGCTCTGGGCTCAGTGAGCTAGAGCCTTGTCTTCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR TCA 72 bp | TGCTCCACAGCTGCCCACTGCTCAGTTATCTTATGGTaGCTAAATACAGGGAACCAGAAGCGGGGTCAGGTG | + |
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Preference number: 3 (lower is better) Translates to: CSTAAHCSVILW*LNTGNQKRGQV Trigger: CACCTGACCCCGCTTCTGGTTCCCTGTATTTAGTCACCATAAGATAACTGAGCAGTGGGCAGCTGTGGAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR TCA 72 bp | CTGGTTAGTGCACGGTCCTTTGGTGGCCATCAGTGGTaGGGTACAAGTGTACAGGGGGTTCAGGTAGAAATA | + |
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Preference number: 3 (lower is better) Translates to: LVSARSFGGHQW*GTSVQGVQVEI Trigger: TATTTCTACCTGAACCCCCTGTACACTTGTACCTCACCACTGATGGCCACCAAAGGACCGTGCACTAACCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CCA 72 bp | GGTTCAGGTAGAAATAAGGACACAGAGGATCTGCCTTaGCTCAGGACAAACATGGGTGGGGTACGGCAAAAC | + |
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Preference number: 3 (lower is better) Translates to: GSGRNKDTEDLP*LRTNMGGVRQN Trigger: GTTTTGCCGTACCCCACCCATGTTTGTCCTGAGCCAAGGCAGATCCTCTGTGTCCTTATTTCTACCTGAACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR CAA 90 bp | CTGAGAAGACAAGGCTCTAGCTCACTGAGCCCAGAGCTCTGCCCTTCACCAGTCCATTTCAAACAAAGTTaGGCTTGGACAATCCTGATG | + |
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Preference number: 3 (lower is better) Translates to: LRRQGSSSLSPELCPSPVHFKQS*AWTILM Trigger: CATCAGGATTGTCCAAGCCAAACTTTGTTTGAAATG...GACTGGTGAAGGGCAGAGCTCTGGGCTCAGTGAGCTAGAGCCTTGTCTTCTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR GCA 72 bp | TGCCTCTATGCTGCAAATGCCAGGAATCTTGAGAGCTaGCAATGTTCAGTCATCTTCACCCTGGCCTCCTTT | + |
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Preference number: 3 (lower is better) Translates to: CLYAANARNLES*QCSVIFTLASF Trigger: AAAGGAGGCCAGGGTGAAGATGACTGAACATTGGCAGCTCTCAAGATTCCTGGCATTTGCAGCATAGAGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR GCA 72 bp | CCTCCTACCTATGCGCTAGCTCTGCTACTTCAAGCCTaGGACATGATTACCATTTCCTACACAAAGGTCCCT | + |
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Preference number: 3 (lower is better) Translates to: PPTYALALLLQA*DMITISYTKVP Trigger: AGGGACCTTTGTGTAGGAAATGGTAATCATGTCGCAGGCTTGAAGTAGCAGAGCTAGCGCATAGGTAGGAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CCA 72 bp | AGCAATCCTGGAAGAATGAAGATGTCTTTGAAGCTATaGGCCCCGTCCTCTTCCAGTCTAGCTGCCTCTATG | + |
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Preference number: 3 (lower is better) Translates to: SNPGRMKMSLKL*APSSSSLAASM Trigger: CATAGAGGCAGCTAGACTGGAAGAGGACGGGGCCCATAGCTTCAAAGACATCTTCATTCTTCCAGGATTGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR CCA 72 bp | TTGCCACTTCCCTCTGACAGGCAGTCACTCATTGCCTaGAGAAGCTTGTCCAAGGTATCGAATCAATGGTCA | + |
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Preference number: 3 (lower is better) Translates to: LPLPSDRQSLIA*RSLSKVSNQWS Trigger: TGACCATTGATTCGATACCTTGGACAAGCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR CAA 90 bp | AAGAATGAAGATGTCTTTGAAGCTATGGGCCCCGTCCTCTTCCAGTCTAGCTGCCAAATGCCAGGAATCTaGAGAGCTGCCAATGTTCAG | + |
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Preference number: 3 (lower is better) Translates to: KNEDVFEAMGPVLFQSSCQMPGI*RAANVQ Trigger: CTGAACATTGGCAGCTCTCAAGATTCCTGGCATTTG...GCAGCTAGACTGGAAGAGGACGGGGCCCATAGCTTCAAAGACATCTTCATTCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR CCA 72 bp | CACAGAGGATCTGCCTTGGCTCAGGACAAACATGGGTaGGGTACGGCAAAACAAGAACTGTATTTACAGGTA | + |
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Preference number: 3 (lower is better) Translates to: HRGSALAQDKHG*GTAKQELYLQV Trigger: TACCTGTAAATACAGTTCTTGTTTTGCCGTACCCCACCCATGTTTGTCCTGAGCCAAGGCAGATCCTCTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CCA 72 bp | AGGACACAGAGGATCTGCCTTGGCTCAGGACAAACATaGGTGGGGTACGGCAAAACAAGAACTGTATTTACA | + |
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Preference number: 3 (lower is better) Translates to: RTQRICLGSGQT*VGYGKTRTVFT Trigger: TGTAAATACAGTTCTTGTTTTGCCGTACCCCACCCATGTTTGTCCTGAGCCAAGGCAGATCCTCTGTGTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR CAA 90 bp | ACCACCTTGCCACTTCCCTCTGACAGGCAGTCACTCATTGCCTGGAGAAGCTTGCAAACAAAGTTTGGCTaGGACAATCCTGATGAAATT | + |
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Preference number: 3 (lower is better) Translates to: TTLPLPSDRQSLIAWRSLQTKFG*DNPDEI Trigger: AATTTCATCAGGATTGTCCAAGCCAAACTTTGTTTG...CAAGCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGGTGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR CAA 90 bp | CTGCAGATGATTAGAATGGATGAAGGCCAGGCCGCATCTGAGAAGACAAGGCTCCTAGAAACCATCTGGTaGGTTGAACAAAACCATATA | + |
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Preference number: 3 (lower is better) Translates to: LQMIRMDEGQAASEKTRLLETIW*VEQNHI Trigger: TATATGGTTTTGTTCAACCAACCAGATGGTTTCTAG...GAGCCTTGTCTTCTCAGATGCGGCCTGGCCTTCATCCATTCTAATCATCTGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR-3UTR CAA 90 bp | AAGAATGAAGATGTCTTTGAAGCTATGGGCCCCGTCCTCTTCCAGTCTAGCTGCCAAACAAAGTTTGGCTaGGACAATCCTGATGAAATT | + |
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Preference number: 3 (lower is better) Translates to: KNEDVFEAMGPVLFQSSCQTKFG*DNPDEI Trigger: AATTTCATCAGGATTGTCCAAGCCAAACTTTGTTTG...GCAGCTAGACTGGAAGAGGACGGGGCCCATAGCTTCAAAGACATCTTCATTCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR TCA 72 bp | CATGGGCATCTAGTGCCTAGAAACCATCTGGTTGGTTaGACAAAACCATATATGCTTCCAGTGATTTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: HGHLVPRNHLVG*TKPYMLPVIFK Trigger: TTTAAAAATCACTGGAAGCATATATGGTTTTGTTCAACCAACCAGATGGTTTCTAGGCACTAGATGCCCATG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CCA 72 bp | TATCAACATAAAAGGCATTTCAAACAAAGTTTGGCTTaGACAATCCTGATGAAATTTCTGAGAGTTCGCCAT | + |
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Preference number: 3 (lower is better) Translates to: YQHKRHFKQSLA*TILMKFLRVRH Trigger: ATGGCGAACTCTCAGAAATTTCATCAGGATTGTCCAAGCCAAACTTTGTTTGAAATGCCTTTTATGTTGATA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| CDS-3UTR GCA 90 bp | ACCACCTTGCCACTTCCCTCTGACAGGCAGTCACTCATTGCCTGGAGAAGCTTGGCGAAGTCGGCGGCCTaGCGCACGCCGGAAACTAGC | + |
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Preference number: 4 (lower is better) Translates to: TTLPLPSDRQSLIAWRSLAKSAA*RTPETS Trigger: GCTAGTTTCCGGCGTGCGGCAGGCCGCCGACTTCGC...CAAGCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGGTGGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CAA 72 bp | CTGAGCCCAGAGCTCTGCCCTTCACCAGTCACCACCTaGCCACTTCCCTCTGACAGGCAGTCACTCATTGCC | + |
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Preference number: 4 (lower is better) Translates to: LSPELCPSPVTT*PLPSDRQSLIA Trigger: GGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGGTGGTGACTGGTGAAGGGCAGAGCTCTGGGCTCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CAA 72 bp | GACCCCACTGTCTTTCTGGCCACAATGGGCCTGCCGTaGATGAGTCCTGCTGTGTACACTGCTCCACAGCTG | + |
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Preference number: 4 (lower is better) Translates to: DPTVFLATMGLP*MSPAVYTAPQL Trigger: CAGCTGTGGAGCAGTGTACACAGCAGGACTCATCAACGGCAGGCCCATTGTGGCCAGAAAGACAGTGGGGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| 3UTR CAA 72 bp | CCACCTTGCCACTTCCCTCTGACAGGCAGTCACTCATaGCCTGGAGAAGCTTGTCCAAGGTATCGAATCAAT | + |
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Preference number: 4 (lower is better) Translates to: PPCHFPLTGSHS*PGEACPRYRIN Trigger: ATTGATTCGATACCTTGGACAAGCTTCTCCAGGCAATGAGTGACTGCCTGTCAGAGGGAAGTGGCAAGGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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| CDS-3UTR GCA 90 bp | TCCAGTCTAGCTGCCTCTATGCTGCAAATGCCAGGAATCTTGAGAGCTGCCAATTCTAGAGGAAGAGTCTaGACTTTTGTCACGTGGGCG | + |
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Preference number: 4 (lower is better) Translates to: SSLAASMLQMPGILRAANSRGRV*TFVTWA Trigger: CGCCCACGTGACAAAAGTGCAGACTCTTCCTCTAGA...ATTGGCAGCTCTCAAGATTCCTGGCATTTGCAGCATAGAGGCAGCTAGACTGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127136.2 |
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| 3UTR CAA 72 bp | AGTCTAGCTGCCTCTATGCTGCAAATGCCAGGAATCTaGAGAGCTGCCAATGTTCAGTCATCTTCACCCTGG | + |
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Preference number: 4 (lower is better) Translates to: SLAASMLQMPGI*RAANVQSSSPW Trigger: CCAGGGTGAAGATGACTGAACATTGGCAGCTCTCAAGATTCCTGGCATTTGCAGCATAGAGGCAGCTAGACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102763.5 ENSMUST00000127136.2 |
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| 3UTR CAA 72 bp | GCCTCAGTGAGCTGTAAAATGAGGCTGGATGCTTTTTaGTACATTGCCTCCTACCTATGCGCTAGCTCTGCT | + |
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Preference number: 4 (lower is better) Translates to: ASVSCKMRLDAF*YIASYLCASSA Trigger: AGCAGAGCTAGCGCATAGGTAGGAGGCAATGTACAAAAAAGCATCCAGCCTCATTTTACAGCTCACTGAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102763.5 |
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