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Pregenerated sensors for CDKN2A (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044303

Ensembl transcript IDs: ENSMUST00000060501.5, ENSMUST00000107131.2

Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ATCCAGCCATTATTCCCTTCGCGGCCGCCTTCGCTCAGTTTCTCATaGCATTCCTTTCCTGTCCAGGTCCCTCCCTCCCTCCCTCCCTCC +
Preference number: 1 (lower is better)
Translates to: IQPLFPSRPPSLSFS*HSFPVQVPPSLPPS
Trigger: GGAGGGAGGGAGGGAGGGAGGGACCTGGACAGGAAAGGAATGGCATGAGAAACTGAGCGAAGGCGGCCGCGAAGGGAATAATGGCTGGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS-3UTR CCA 90 bp ATGCTAGACACGCTAGCATCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGGCTCCTGGGCCGCCGCCCTaGCCAGTCTGTCTGCAGCGG +
Preference number: 4 (lower is better)
Translates to: MLDTLASLEVKLRRKRRAPGPPP*PVCLQR
Trigger: CCGCTGCAGACAGACTGGCCAGGGCGGCGGCCCAGG...AGCCCGCCTTTTTCTTCTTAGCTTCACTTCTAGCGATGCTAGCGTGTCTAGCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS-3UTR TCA 90 bp GCGGCCGCCTTCGCTCAGTTTCTCATGCCATTCCTTTCCTGTCCAGGTCCCTCCAATCTGCACCGTAGTTaGGCAGAAGAGCTGCTACGT +
Preference number: 4 (lower is better)
Translates to: AAAFAQFLMPFLSCPGPSNLHRS*AEELLR
Trigger: ACGTAGCAGCTCTTCTGCTCAACTACGGTGCAGATT...GGAGGGACCTGGACAGGAAAGGAATGGCATGAGAAACTGAGCGAAGGCGGCCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS-3UTR TCA 90 bp CATGCTAGACACGCTAGCATCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGGCGGCCCTGGGCGTGCTTaGGCTGAAGCTATGCCCGTC +
Preference number: 4 (lower is better)
Translates to: HARHASIARSEAKKKKAGGPGRA*AEAMPV
Trigger: GACGGGCATAGCTTCAGCTCAAGCACGCCCAGGGCC...GCCCGCCTTTTTCTTCTTAGCTTCACTTCTAGCGATGCTAGCGTGTCTAGCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS-3UTR GCA 90 bp CATGCTAGACACGCTAGCATCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGGCCCCGGCTTCCAGCAGTaGCCGCACGTCATGCACACG +
Preference number: 4 (lower is better)
Translates to: HARHASIARSEAKKKKAGPGFQQ*PHVMHT
Trigger: CGTGTGCATGACGTGCGGGCACTGCTGGAAGCCGGG...GCCCGCCTTTTTCTTCTTAGCTTCACTTCTAGCGATGCTAGCGTGTCTAGCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS-3UTR GCA 90 bp GCGGCCGCCTTCGCTCAGTTTCTCATGCCATTCCTTTCCTGTCCAGGTCCCTCCGTTGAGCAGAAGAGCTaGTACGTGAACGTTGCCCAT +
Preference number: 4 (lower is better)
Translates to: AAAFAQFLMPFLSCPGPSVEQKS*YVNVAH
Trigger: ATGGGCAACGTTCACGTAGCAGCTCTTCTGCTCAAC...GGAGGGACCTGGACAGGAAAGGAATGGCATGAGAAACTGAGCGAAGGCGGCCGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS-3UTR CCA 90 bp CACATGCTAGACACGCTAGCATCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGAAGAAAACCCTCTCTTaGAGTGGGCGGCCCGCGCGC +
Preference number: 4 (lower is better)
Translates to: HMLDTLASLEVKLRRKRRKKTLS*SGRPAR
Trigger: GCGCGCGGGCCGCCCACTCCAAGAGAGGGTTTTCTT...CCGCCTTTTTCTTCTTAGCTTCACTTCTAGCGATGCTAGCGTGTCTAGCATGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS-3UTR CCA 90 bp TCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGGCTGAGGCCGGATTTAGCTCTCCCATCATCATCACCTaGTCCAGGATTCCGGTGCGG +
Preference number: 4 (lower is better)
Translates to: SLEVKLRRKRRAEAGFSSPIIIT*SRIPVR
Trigger: CCGCACCGGAATCCTGGACCAGGTGATGATGATGGG...AGAGCTAAATCCGGCCTCAGCCCGCCTTTTTCTTCTTAGCTTCACTTCTAGCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS-3UTR GCA 90 bp ACGCTAGCATCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGGCTGAGGCCGGAGTTGAGCAGAAGAGCTaGTACGTGAACGTTGCCCAT +
Preference number: 4 (lower is better)
Translates to: TLASLEVKLRRKRRAEAGVEQKS*YVNVAH
Trigger: ATGGGCAACGTTCACGTAGCAGCTCTTCTGCTCAAC...TCCGGCCTCAGCCCGCCTTTTTCTTCTTAGCTTCACTTCTAGCGATGCTAGCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000060501.5
ENSMUST00000107131.2
CDS-3UTR TCA 90 bp CCACATGCTAGACACGCTAGCATCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGCTGAATCCTCACAGTaGCCAAGAACCTGCGACCCA +
Preference number: 4 (lower is better)
Translates to: PHARHASIARSEAKKKKAAESSQ*PRTCDP
Trigger: TGGGTCGCAGGTTCTTGGTCACTGTGAGGATTCAGC...CGCCTTTTTCTTCTTAGCTTCACTTCTAGCGATGCTAGCGTGTCTAGCATGTGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS-3UTR TCA 90 bp TCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGGGCTGAGGCCGGATTTAGCTCTAATCTGCACCGTAGTTaGGCAGAAGAGCTGCTACGT +
Preference number: 4 (lower is better)
Translates to: SLEVKLRRKRRAEAGFSSNLHRS*AEELLR
Trigger: ACGTAGCAGCTCTTCTGCTCAACTACGGTGCAGATT...AGAGCTAAATCCGGCCTCAGCCCGCCTTTTTCTTCTTAGCTTCACTTCTAGCGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS GCA 90 bp GGGGCGTTGGGCGAAACCCCGGCTTCCAGCAGTGCCCGCACGTCATaGACACGGCCCTGGGCCGCCGCCCTGGCCAGTCTGTCTGCAGCG +
Preference number: 5 (lower is better)
Translates to: GALGETPASSSARTS*TRPWAAALASLSAA
Trigger: CGCTGCAGACAGACTGGCCAGGGCGGCGGCCCAGGGCCGTGTGCATGACGTGCGGGCACTGCTGGAAGCCGGGGTTTCGCCCAACGCCCC
73% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS GCA 90 bp ACCGAAAGAGTTCGGGGCGTTGGGCGAAACCCCGGCTTCCAGCAGTaGCCGCACGTCATGCACACGGCCCTGGGCCGCCGCCCTGGCCAG +
Preference number: 5 (lower is better)
Translates to: TERVRGVGRNPGFQQ*PHVMHTALGRRPGQ
Trigger: CTGGCCAGGGCGGCGGCCCAGGGCCGTGTGCATGACGTGCGGGCACTGCTGGAAGCCGGGGTTTCGCCCAACGCCCCGAACTCTTTCGGT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS CCA 90 bp TCTCCGGGATCGCACGAACTTCACCAAGAAAACCCTCTCTTGGAGTaGGCGGCCCGCGCGCTGAATCCTCACAGTGACCAAGAACCTGCG +
Preference number: 5 (lower is better)
Translates to: SPGSHELHQENPLLE*AARALNPHSDQEPA
Trigger: CGCAGGTTCTTGGTCACTGTGAGGATTCAGCGCGCGGGCCGCCCACTCCAAGAGAGGGTTTTCTTGGTGAAGTTCGTGCGATCCCGGAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS-3UTR CAA 90 bp CCACATGCTAGACACGCTAGCATCGCTAGAAGTGAAGCTAAGAAGAAAAAGGCGCAAGAAAACCCTCTCTaGGAGTGGGCGGCCCGCGCG +
Preference number: 5 (lower is better)
Translates to: PHARHASIARSEAKKKKAQENPL*EWAARA
Trigger: CGCGCGGGCCGCCCACTCCAAGAGAGGGTTTTCTTG...CGCCTTTTTCTTCTTAGCTTCACTTCTAGCGATGCTAGCGTGTCTAGCATGTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS GCA 72 bp GGCGAAACCCCGGCTTCCAGCAGTGCCCGCACGTCATaGACACGGCCCTGGGCCGCCGCCCTGGCCAGTCTG +
Preference number: 6 (lower is better)
Translates to: GETPASSSARTS*TRPWAAALASL
Trigger: CAGACTGGCCAGGGCGGCGGCCCAGGGCCGTGTGCATGACGTGCGGGCACTGCTGGAAGCCGGGGTTTCGCC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS CCA 72 bp GCTTCCAGCAGTGCCCGCACGTCATGCACACGGCCCTaGGCCGCCGCCCTGGCCAGTCTGTCTGCAGCGGAC +
Preference number: 6 (lower is better)
Translates to: ASSSARTSCTRP*AAALASLSAAD
Trigger: GTCCGCTGCAGACAGACTGGCCAGGGCGGCGGCCCAGGGCCGTGTGCATGACGTGCGGGCACTGCTGGAAGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS TCA 72 bp GGCCGCGAAGTTCCAGGGCCCTGGGCGTGCTTGAGCTaGAGCTATGCCCGTCGGTCTGGGCGACGTTCCCAG +
Preference number: 6 (lower is better)
Translates to: GREVPGPWACLS*SYARRSGRRSQ
Trigger: CTGGGAACGTCGCCCAGACCGACGGGCATAGCTTCAGCTCAAGCACGCCCAGGGCCCTGGAACTTCGCGGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS GCA 72 bp AGTTCCAGGGCCCTGGGCGTGCTTGAGCTGAAGCTATaGCCGTCGGTCTGGGCGACGTTCCCAGCGGTACAC +
Preference number: 6 (lower is better)
Translates to: SSRALGVLELKL*PSVWATFPAVH
Trigger: GTGTACCGCTGGGAACGTCGCCCAGACCGACGGGCATAGCTTCAGCTCAAGCACGCCCAGGGCCCTGGAACT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060501.5
CDS CAA 72 bp ACGCAAATATCGCACGATGTCTTGATGTCCCCGCTCTaGGGCCAAGTCGAGCGGCAGGCGACCCCAGGCATC +
Preference number: 6 (lower is better)
Translates to: TQISHDVLMSPL*GQVERQATPGI
Trigger: GATGCCTGGGGTCGCCTGCCGCTCGACTTGGCCCAAGAGCGGGGACATCAAGACATCGTGCGATATTTGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060501.5
ENSMUST00000107131.2
CDS CAA 72 bp CCGGGATCGCACGAACTTCACCAAGAAAACCCTCTCTaGGAGTGGGCGGCCCGCGCGCTGAATCCTCACAGT +
Preference number: 6 (lower is better)
Translates to: PGSHELHQENPL*EWAARALNPHS
Trigger: ACTGTGAGGATTCAGCGCGCGGGCCGCCCACTCCAAGAGAGGGTTTTCTTGGTGAAGTTCGTGCGATCCCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS CCA 72 bp TCGCACGAACTTCACCAAGAAAACCCTCTCTTGGAGTaGGCGGCCCGCGCGCTGAATCCTCACAGTGACCAA +
Preference number: 6 (lower is better)
Translates to: SHELHQENPLLE*AARALNPHSDQ
Trigger: TTGGTCACTGTGAGGATTCAGCGCGCGGGCCGCCCACTCCAAGAGAGGGTTTTCTTGGTGAAGTTCGTGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000107131.2
CDS GCA 72 bp GCGGGAGAAGGTAGTGGGGTCCTCGCAGTTCGAATCTaGACCGTAGTTGAGCAGAAGAGCTGCTACGTGAAC +
Preference number: 6 (lower is better)
Translates to: AGEGSGVLAVRI*TVVEQKSCYVN
Trigger: GTTCACGTAGCAGCTCTTCTGCTCAACTACGGTGCAGATTCGAACTGCGAGGACCCCACTACCTTCTCCCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060501.5
ENSMUST00000107131.2