Pregenerated sensors for CDKN1A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023067Ensembl transcript IDs: ENSMUST00000023829.8, ENSMUST00000119901.9, ENSMUST00000122348.3, ENSMUST00000233296.2
Found 70 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCGGGTGTGAGGACTCGGGACAATGCAGGGTGCTGTCCCTTCTCGTaGGACGCTTACAATCTGAGTGGAGACAGGGAGGGAGCCACAATA | + |
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Preference number: 1 (lower is better) Translates to: SGVRTRDNAGCCPFS*DAYNLSGDREGATI Trigger: TATTGTGGCTCCCTCCCTGTCTCCACTCAGATTGTAAGCGTCTCACGAGAAGGGACAGCACCCTGCATTGTCCCGAGTCCTCACACCCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 90 bp | GGGACAATGCAGGGTGCTGTCCCTTCTCGTGAGACGCTTACAATCTaGGTGGAGACAGGGAGGGAGCCACAATACATGTTCTTGGGGTGC | + |
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Preference number: 1 (lower is better) Translates to: GTMQGAVPSRETLTI*VETGREPQYMFLGC Trigger: GCACCCCAAGAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATTGTAAGCGTCTCACGAGAAGGGACAGCACCCTGCATTGTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 90 bp | CGGTATTCAACACTGAGAAAGGATCAGCCATTGCTCAGTGTCCTGTaGGCTCCCTTAGCCCCCAAGACACCATCTTGGCCTGGCTCCTTG | + |
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Preference number: 1 (lower is better) Translates to: RYSTLRKDQPLLSVL*APLAPKTPSWPGSL Trigger: CAAGGAGCCAGGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCTCACAGGACACTGAGCAATGGCTGATCCTTTCTCAGTGTTGAATACCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 90 bp | AATCATCGAGAAGTATTTATTGAGCACCAGCTTTGGGGTCGGGTGTaGGGACTCGGGACAATGCAGGGTGCTGTCCCTTCTCGTGAGACG | + |
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Preference number: 1 (lower is better) Translates to: NHREVFIEHQLWGRV*GLGTMQGAVPSRET Trigger: CGTCTCACGAGAAGGGACAGCACCCTGCATTGTCCCGAGTCCTCACACCCGACCCCAAAGCTGGTGCTCAATAAATACTTCTCGATGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 90 bp | TGTCTTCACAGGTCTGAGCAATGTCAAGAGTCGGGATATTACGGTTaGGTCCTAACTGCCATCCCTGTTCTAGGCTGTGACTGCTTCACT | + |
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Preference number: 1 (lower is better) Translates to: CLHRSEQCQESGYYG*VLTAIPVLGCDCFT Trigger: AGTGAAGCAGTCACAGCCTAGAACAGGGATGGCAGTTAGGACTCAACCGTAATATCCCGACTCTTGACATTGCTCAGACCTGTGAAGACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR TCA 90 bp | GCTCTGGGAGGCCTGTCTCACCACCAAGGACCCACCCTAGACCCACAATGCAGGTCGGGATATTACGGTTaGGTCCTAACTGCCATCCCT | + |
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Preference number: 2 (lower is better) Translates to: ALGGLSHHQGPTLDPQCRSGYYG*VLTAIP Trigger: AGGGATGGCAGTTAGGACTCAACCGTAATATCCCGA...CCTGCATTGTGGGTCTAGGGTGGGTCCTTGGTGGTGAGACAGGCCTCCCAGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | GCCATTGCTCAGTGTCCTGTGAGCTCCCTTAGCCCCCAAGACACCATCTTGGCCCACCATAGAATGCTCTaGGAGGCCTGTCTCACCACC | + |
|
Preference number: 2 (lower is better) Translates to: AIAQCPVSSLSPQDTILAHHRML*EACLTT Trigger: GGTGGTGAGACAGGCCTCCCAGAGCATTCTATGGTG...GGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCTCACAGGACACTGAGCAATGGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR TCA 90 bp | AAAGGATCAGCCATTGCTCAGTGTCCTGTGAGCTCCCTTAGCCCCCAAGACACCAATGGGAGAAGTCACTaGGAACCCCAACTGGGGTCC | + |
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Preference number: 2 (lower is better) Translates to: KGSAIAQCPVSSLSPQDTNGRSH*EPQLGS Trigger: GGACCCCAGTTGGGGTTCTCAGTGACTTCTCCCATT...GGTGTCTTGGGGGCTAAGGGAGCTCACAGGACACTGAGCAATGGCTGATCCTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | CAAAGGGGATCCAGAGTGGGGACCATTCCTGTCTTCACAGGTCTGAGCAATGTCCCCCCAGGTAAGAAGTaGCAAGGAACCAGGCAGGGA | + |
|
Preference number: 2 (lower is better) Translates to: QRGSRVGTIPVFTGLSNVPPGKK*QGTRQG Trigger: TCCCTGCCTGGTTCCTTGCCACTTCTTACCTGGGGG...GACATTGCTCAGACCTGTGAAGACAGGAATGGTCCCCACTCTGGATCCCCTTTG 56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | CCACCACCACACACCATAGAATGCTCTGGGAGGCCTGTCTCACCACCAAGGACCAAAGGGGATCCAGAGTaGGGACCATTCCTGTCTTCA | + |
|
Preference number: 2 (lower is better) Translates to: PPPHTIECSGRPVSPPRTKGDPE*GPFLSS Trigger: TGAAGACAGGAATGGTCCCCACTCTGGATCCCCTTT...GGTCCTTGGTGGTGAGACAGGCCTCCCAGAGCATTCTATGGTGTGTGGTGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTCCCTTAGCCCCCAAGACACCATCTTGGCCTGGCTCCTTGTACAACTGCTACTGTCTTCACAGGTCTaGGCAATGTCAAGAGTCGGG | + |
|
Preference number: 2 (lower is better) Translates to: SSLSPQDTILAWLLVQLLLSSQV*AMSRVG Trigger: CCCGACTCTTGACATTGCTCAGACCTGTGAAGACAG...TAGCAGTTGTACAAGGAGCCAGGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | CCTTGTACAACTGCTACTAAGAAATGGGAGAAGTCACTGAGAACCCCAACTGGGGACCCACAGGAGAGGTaGGCTCCCCAGGAGTGGCAA | + |
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Preference number: 2 (lower is better) Translates to: PCTTATKKWEKSLRTPTGDPQER*APQEWQ Trigger: TTGCCACTCCTGGGGAGCCCACCTCTCCTGTGGGTC...CCCAGTTGGGGTTCTCAGTGACTTCTCCCATTTCTTAGTAGCAGTTGTACAAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR TCA 90 bp | AGCTCCCTTAGCCCCCAAGACACCATCTTGGCCTGGCTCCTTGTACAACTGCTATCGGGATATTACGGTTaGGTCCTAACTGCCATCCCT | + |
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Preference number: 2 (lower is better) Translates to: SSLSPQDTILAWLLVQLLSGYYG*VLTAIP Trigger: AGGGATGGCAGTTAGGACTCAACCGTAATATCCCGA...TAGCAGTTGTACAAGGAGCCAGGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR GCA 90 bp | AAAGGATCAGCCATTGCTCAGTGTCCTGTGAGCTCCCTTAGCCCCCAAGACACCGTTCTAGGCTGTGACTaGTTCACTGTCATCCTAGCT | + |
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Preference number: 2 (lower is better) Translates to: KGSAIAQCPVSSLSPQDTVLGCD*FTVILA Trigger: AGCTAGGATGACAGTGAAGCAGTCACAGCCTAGAAC...GGTGTCTTGGGGGCTAAGGGAGCTCACAGGACACTGAGCAATGGCTGATCCTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR CAA 90 bp | ATTGCTCAGTGTCCTGTGAGCTCCCTTAGCCCCCAAGACACCATCTaGGCCTGGCTCCTTGTACAACTGCTACTAAGAAATGGGAGAAGT | + |
|
Preference number: 2 (lower is better) Translates to: IAQCPVSSLSPQDTI*AWLLVQLLLRNGRS Trigger: ACTTCTCCCATTTCTTAGTAGCAGTTGTACAAGGAGCCAGGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCTCACAGGACACTGAGCAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | TTACAATCTGAGTGGAGACAGGGAGGGAGCCACAATACATGTTCTTGGGGTGCGTTTAAGTTTGGAGACTaGGAGAGGGCAGGCAGCGTA | + |
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Preference number: 2 (lower is better) Translates to: LQSEWRQGGSHNTCSWGAFKFGD*ERAGSV Trigger: TACGCTGCCTGCCCTCTCCCAGTCTCCAAACTTAAA...CGCACCCCAAGAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGACCCCAAAGTCCTACTCATTTTTCCAAAGTGCTATTCAGGTCTGAGGATCCCCCAGGTAAGAAGTaGCAAGGAACCAGGCAGGGA | + |
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Preference number: 2 (lower is better) Translates to: RRPQSPTHFSKVLFRSEDPPGKK*QGTRQG Trigger: TCCCTGCCTGGTTCCTTGCCACTTCTTACCTGGGGG...ATCCTCAGACCTGAATAGCACTTTGGAAAAATGAGTAGGACTTTGGGGTCTCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | AATCTGAGTGGAGACAGGGAGGGAGCCACAATACATGTTCTTGGGGTGCGGGCTACTGCTACTAAGAAATaGGAGAAGTCACTGAGAACC | + |
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Preference number: 2 (lower is better) Translates to: NLSGDREGATIHVLGVRATATKK*EKSLRT Trigger: GGTTCTCAGTGACTTCTCCCATTTCTTAGTAGCAGT...AGCCCGCACCCCAAGAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CCA 90 bp | TTCCTCCGGTATAGGAAACACAGAGCTTGGGTTGGGAGGGGCTTAAATAATAATTTTAAGTTTGGAGACTaGGAGAGGGCAGGCAGCGTA | + |
|
Preference number: 2 (lower is better) Translates to: FLRYRKHRAWVGRGLNNNFKFGD*ERAGSV Trigger: TACGCTGCCTGCCCTCTCCCAGTCTCCAAACTTAAA...ATTATTATTTAAGCCCCTCCCAACCCAAGCTCTGTGTTTCCTATACCGGAGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 72 bp | GTGAGGGCTAAGGCCGAAGATGGGGAAGAGGCCTCCTaGCCCACAGCAGAAGAGGGCGGGGCTCCCGTGGGC | + |
|
Preference number: 3 (lower is better) Translates to: VRAKAEDGEEAS*PTAEEGGAPVG Trigger: GCCCACGGGAGCCCCGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCATCTTCGGCCTTAGCCCTCAC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| 3UTR GCA 72 bp | TACATTCCCTTCCAGTCCACTGAGCTGTGGGGCAAGTaGCTAGATATGCCTCCTGCCGACCTGCAGAAGGGG | + |
|
Preference number: 3 (lower is better) Translates to: YIPFQSTELWGK*LDMPPADLQKG Trigger: CCCCTTCTGCAGGTCGGCAGGAGGCATATCTAGGCACTTGCCCCACAGCTCAGTGGACTGGAAGGGAATGTA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 72 bp | AGGACTCGGGACAATGCAGGGTGCTGTCCCTTCTCGTaGGACGCTTACAATCTGAGTGGAGACAGGGAGGGA | + |
|
Preference number: 3 (lower is better) Translates to: RTRDNAGCCPFS*DAYNLSGDREG Trigger: TCCCTCCCTGTCTCCACTCAGATTGTAAGCGTCTCACGAGAAGGGACAGCACCCTGCATTGTCCCGAGTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR GCA 72 bp | GAGACAGGGAGGGAGCCACAATACATGTTCTTGGGGTaGGGGCTAAGGGTAGACAGTCCAGACCAGGATGTT | + |
|
Preference number: 3 (lower is better) Translates to: ETGREPQYMFLG*GLRVDSPDQDV Trigger: AACATCCTGGTCTGGACTGTCTACCCTTAGCCCGCACCCCAAGAACATGTATTGTGGCTCCCTCCCTGTCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 72 bp | CAGGGTGCTGTCCCTTCTCGTGAGACGCTTACAATCTaGGTGGAGACAGGGAGGGAGCCACAATACATGTTC | + |
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Preference number: 3 (lower is better) Translates to: QGAVPSRETLTI*VETGREPQYMF Trigger: GAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATTGTAAGCGTCTCACGAGAAGGGACAGCACCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 72 bp | GAAGTATTTATTGAGCACCAGCTTTGGGGTCGGGTGTaGGGACTCGGGACAATGCAGGGTGCTGTCCCTTCT | + |
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Preference number: 3 (lower is better) Translates to: EVFIEHQLWGRV*GLGTMQGAVPS Trigger: AGAAGGGACAGCACCCTGCATTGTCCCGAGTCCTCACACCCGACCCCAAAGCTGGTGCTCAATAAATACTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR CCA 72 bp | CTTGGCCTGGCTCCTTGTACAACTGCTACTAAGAAATaGGAGAAGTCACTGAGAACCCCAACTGGGGTCCCC | + |
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Preference number: 3 (lower is better) Translates to: LGLAPCTTATKK*EKSLRTPTGVP Trigger: GGGGACCCCAGTTGGGGTTCTCAGTGACTTCTCCCATTTCTTAGTAGCAGTTGTACAAGGAGCCAGGCCAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR CCA 72 bp | GTGAGCTCCCTTAGCCCCCAAGACACCATCTTGGCCTaGCTCCTTGTACAACTGCTACTAAGAAATGGGAGA | + |
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Preference number: 3 (lower is better) Translates to: VSSLSPQDTILA*LLVQLLLRNGR Trigger: TCTCCCATTTCTTAGTAGCAGTTGTACAAGGAGCCAGGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCTCAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR CCA 72 bp | GTGCTGTCCCTTCTCGTGAGACGCTTACAATCTGAGTaGAGACAGGGAGGGAGCCACAATACATGTTCTTGG | + |
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Preference number: 3 (lower is better) Translates to: VLSLLVRRLQSE*RQGGSHNTCSW Trigger: CCAAGAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATTGTAAGCGTCTCACGAGAAGGGACAGCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAATCTGAGTGGAGACAGGGAGGGAGCCACAATACATGTTCTTGGGGTGCGGACCCACTAAGTGCTTaGACACCCACGGTATTCAAC | + |
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Preference number: 3 (lower is better) Translates to: LQSEWRQGGSHNTCSWGADPLSA*TPTVFN Trigger: GTTGAATACCGTGGGTGTCAAAGCACTTAGTGGGTC...CGCACCCCAAGAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CAA 90 bp | TTACAATCTGAGTGGAGACAGGGAGGGAGCCACAATACATGTTCTTGGGGTGCGACGGATGCAGATGGGTaGATATCAGTAGGACTGTTC | + |
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Preference number: 3 (lower is better) Translates to: LQSEWRQGGSHNTCSWGATDADG*ISVGLF Trigger: GAACAGTCCTACTGATATCAACCCATCTGCATCCGT...CGCACCCCAAGAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATTGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 72 bp | AGGTCTGAGCAATGTCAAGAGTCGGGATATTACGGTTaGGTCCTAACTGCCATCCCTGTTCTAGGCTGTGAC | + |
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Preference number: 3 (lower is better) Translates to: RSEQCQESGYYG*VLTAIPVLGCD Trigger: GTCACAGCCTAGAACAGGGATGGCAGTTAGGACTCAACCGTAATATCCCGACTCTTGACATTGCTCAGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR-3UTR CAA 90 bp | TGCATATACATTCCCTTCCAGTCCACTGAGCTGTGGGGCAAGTGCCTAGATATGACGGATGCAGATGGGTaGATATCAGTAGGACTGTTC | + |
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Preference number: 3 (lower is better) Translates to: CIYIPFQSTELWGKCLDMTDADG*ISVGLF Trigger: GAACAGTCCTACTGATATCAACCCATCTGCATCCGT...CATATCTAGGCACTTGCCCCACAGCTCAGTGGACTGGAAGGGAATGTATATGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR TCA 72 bp | AAGTCCTACTCATTTTTCCAAAGTGCTATTCAGGTCTaGGGATCACCCCCAGGTAAGAAGTGGCAAGGAACC | + |
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Preference number: 3 (lower is better) Translates to: KSYSFFQSAIQV*GSPPGKKWQGT Trigger: GGTTCCTTGCCACTTCTTACCTGGGGGTGATCCTCAGACCTGAATAGCACTTTGGAAAAATGAGTAGGACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR GCA 90 bp | CTAAGGCCGAAGATGGGGAAGAGGCCTCCTGACCCACAGCAGAAGAGGGCGGGGCCAGGTCGTCACGGCTaGGGGACCCAGGGCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: LRPKMGKRPPDPQQKRAGPGRHG*GTQGSG Trigger: ACCTGAGCCCTGGGTCCCGCAGCCGTGACGACCTGG...CCCCGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCATCTTCGGCCTTAG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | TGGGGAAGAGGCCTCCTGACCCACAGCAGAAGAGGGCGGGGCTCCCGTGGGCACGGGCAGAGGAAGTACTaGGCCTCTTGTCCCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: WGRGLLTHSRRGRGSRGHGQRKY*ASCPLP Trigger: TGGGAGGGGACAAGAGGCCCAGTACTTCCTCTGCCC...GTGCCCACGGGAGCCCCGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | GGGCTAAGGCCGAAGATGGGGAAGAGGCCTCCTGACCCACAGCAGAAGAGGGCGGTGGTCCTCCGGAGCTaGCCCCTGCAGCAGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: GLRPKMGKRPPDPQQKRAVVLRS*PLQQGR Trigger: TCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCAC...CGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCATCTTCGGCCTTAGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | GGGCTAAGGCCGAAGATGGGGAAGAGGCCTCCTGACCCACAGCAGAAGAGGGCGCGTTCTCGGGCCTCCTaGAGACAGCCCGCCATGAGC | + |
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Preference number: 4 (lower is better) Translates to: GLRPKMGKRPPDPQQKRARSRAS*RQPAMS Trigger: GCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACG...CGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCATCTTCGGCCTTAGCCC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | CTAAGGCCGAAGATGGGGAAGAGGCCTCCTGACCCACAGCAGAAGAGGGCGGGGCGTTCTCGGGCCTCCTaGAGACAGCCCGCCATGAGC | + |
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Preference number: 4 (lower is better) Translates to: LRPKMGKRPPDPQQKRAGRSRAS*RQPAMS Trigger: GCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACG...CCCCGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCATCTTCGGCCTTAG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | GCTCTGGGAGGCCTGTCTCACCACCAAGGACCCACCCTAGACCCACAATGCAGGCGTTCTCGGGCCTCCTaGAGACAGCCCGCCATGAGC | + |
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Preference number: 4 (lower is better) Translates to: ALGGLSHHQGPTLDPQCRRSRAS*RQPAMS Trigger: GCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACG...CCTGCATTGTGGGTCTAGGGTGGGTCCTTGGTGGTGAGACAGGCCTCCCAGAGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR GCA 90 bp | AGCTCCCTTAGCCCCCAAGACACCATCTTGGCCTGGCTCCTTGTACAACTGCTACCAGGTCGTCACGGCTaGGGGACCCAGGGCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: SSLSPQDTILAWLLVQLLPGRHG*GTQGSG Trigger: ACCTGAGCCCTGGGTCCCGCAGCCGTGACGACCTGG...TAGCAGTTGTACAAGGAGCCAGGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | AATCTGAGTGGAGACAGGGAGGGAGCCACAATACATGTTCTTGGGGTGCGGGCTGGGCAGAGGAAGTACTaGGCCTCTTGTCCCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: NLSGDREGATIHVLGVRAGQRKY*ASCPLP Trigger: TGGGAGGGGACAAGAGGCCCAGTACTTCCTCTGCCC...AGCCCGCACCCCAAGAACATGTATTGTGGCTCCCTCCCTGTCTCCACTCAGATT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR GCA 90 bp | CCTTGTACAACTGCTACTAAGAAATGGGAGAAGTCACTGAGAACCCCAACTGGGCCAGGTCGTCACGGCTaGGGGACCCAGGGCTCAGGT | + |
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Preference number: 4 (lower is better) Translates to: PCTTATKKWEKSLRTPTGPGRHG*GTQGSG Trigger: ACCTGAGCCCTGGGTCCCGCAGCCGTGACGACCTGG...CCCAGTTGGGGTTCTCAGTGACTTCTCCCATTTCTTAGTAGCAGTTGTACAAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | GGTAGACAGTCCAGACCAGGATGTTACAGAAACAGGGATGTTTGGGGCTGGAGTGGCTCAGGTAGACCTTaGGCAGCCCTAGGCTCCGAA | + |
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Preference number: 4 (lower is better) Translates to: GRQSRPGCYRNRDVWGWSGSGRP*AALGSE Trigger: TTCGGAGCCTAGGGCTGCCCAAGGTCTACCTGAGCC...ACTCCAGCCCCAAACATCCCTGTTTCTGTAACATCCTGGTCTGGACTGTCTACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | AGGAGACCCCAAAGTCCTACTCATTTTTCCAAAGTGCTATTCAGGTCTGAGGATGTGGTCCTCCGGAGCTaGCCCCTGCAGCAGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: RRPQSPTHFSKVLFRSEDVVLRS*PLQQGR Trigger: TCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCAC...ATCCTCAGACCTGAATAGCACTTTGGAAAAATGAGTAGGACTTTGGGGTCTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | CACCATCTTGGCCTGGCTCCTTGTACAACTGCTACTAAGAAATGGGAGAAGTCAGGGCAGAGGAAGTACTaGGCCTCTTGTCCCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: HHLGLAPCTTATKKWEKSGQRKY*ASCPLP Trigger: TGGGAGGGGACAAGAGGCCCAGTACTTCCTCTGCCC...TGACTTCTCCCATTTCTTAGTAGCAGTTGTACAAGGAGCCAGGCCAAGATGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | ACACAAATAATAATTAAGACACACAGAGTGAGGGCTAAGGCCGAAGATGGGGAAGTGGTCCTCCGGAGCTaGCCCCTGCAGCAGGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: TQIIIKTHRVRAKAEDGEVVLRS*PLQQGR Trigger: TCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCAC...TTCCCCATCTTCGGCCTTAGCCCTCACTCTGTGTGTCTTAATTATTATTTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | ACACAAATAATAATTAAGACACACAGAGTGAGGGCTAAGGCCGAAGATGGGGAACGTTCTCGGGCCTCCTaGAGACAGCCCGCCATGAGC | + |
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Preference number: 4 (lower is better) Translates to: TQIIIKTHRVRAKAEDGERSRAS*RQPAMS Trigger: GCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACG...TTCCCCATCTTCGGCCTTAGCCCTCACTCTGTGTGTCTTAATTATTATTTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CCA 90 bp | GAGACTGGGAGAGGGCAGGCAGCGTATATACAGGAGACGTTTAAATTAAAACACGGGCAGAGGAAGTACTaGGCCTCTTGTCCCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: ETGRGQAAYIQETFKLKHGQRKY*ASCPLP Trigger: TGGGAGGGGACAAGAGGCCCAGTACTTCCTCTGCCC...GTGTTTTAATTTAAACGTCTCCTGTATATACGCTGCCTGCCCTCTCCCAGTCTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| 3UTR CAA 72 bp | TGTCCTGTGAGCTCCCTTAGCCCCCAAGACACCATCTaGGCCTGGCTCCTTGTACAACTGCTACTAAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: CPVSSLSPQDTI*AWLLVQLLLRN Trigger: ATTTCTTAGTAGCAGTTGTACAAGGAGCCAGGCCAAGATGGTGTCTTGGGGGCTAAGGGAGCTCACAGGACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR CAA 72 bp | GGATGTTTGGGGCTGGAGTCAGACCCACTAAGTGCTTaGACACCCACGGTATTCAACACTGAGAAAGGATCA | + |
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Preference number: 4 (lower is better) Translates to: GCLGLESDPLSA*TPTVFNTEKGS Trigger: TGATCCTTTCTCAGTGTTGAATACCGTGGGTGTCAAAGCACTTAGTGGGTCTGACTCCAGCCCCAAACATCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| 3UTR CAA 72 bp | ACAGTCCAGACCAGGATGTTACAGAAACAGGGATGTTaGGGGCTGGAGTCAGACCCACTAAGTGCTTTGACA | + |
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Preference number: 4 (lower is better) Translates to: TVQTRMLQKQGC*GLESDPLSALT Trigger: TGTCAAAGCACTTAGTGGGTCTGACTCCAGCCCCAAACATCCCTGTTTCTGTAACATCCTGGTCTGGACTGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023829.8 ENSMUST00000233296.2 |
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| CDS-3UTR CAA 90 bp | TGGGGAAGAGGCCTCCTGACCCACAGCAGAAGAGGGCGGGGCTCCCGTGGGCACCGCTCCCAGACGAAGTaGCCCTCCAGCGGCGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: WGRGLLTHSRRGRGSRGHRSQTK*PSSGVS Trigger: GGAGACGCCGCTGGAGGGCAACTTCGTCTGGGAGCG...GTGCCCACGGGAGCCCCGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCA 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS GCA 90 bp | TTCCGGGCCCACCCGGGGAATCTTCAGGCCGCTCAGACACCAGAGTaGAAGACAGCGACAAGGCCACGTGGTCCTCCGGAGCTGGCCCCT | + |
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Preference number: 5 (lower is better) Translates to: FRAHPGNLQAAQTPE*KTATRPRGPPELAP Trigger: AGGGGCCAGCTCCGGAGGACCACGTGGCCTTGTCGCTGTCTTGCACTCTGGTGTCTGAGCGGCCTGAAGATTCCCCGGGTGGGCCCGGAA 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS-3UTR CAA 90 bp | GGGCTAAGGCCGAAGATGGGGAAGAGGCCTCCTGACCCACAGCAGAAGAGGGCGCGCTCCCAGACGAAGTaGCCCTCCAGCGGCGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GLRPKMGKRPPDPQQKRARSQTK*PSSGVS Trigger: GGAGACGCCGCTGGAGGGCAACTTCGTCTGGGAGCG...CGCCCTCTTCTGCTGTGGGTCAGGAGGCCTCTTCCCCATCTTCGGCCTTAGCCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS CCA 90 bp | CACCAGAGTGCAAGACAGCGACAAGGCCACGTGGTCCTCCGGAGCTaGCCCCTGCAGCAGGGCAGAGGAAGTACTGGGCCTCTTGTCCCC | + |
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Preference number: 5 (lower is better) Translates to: HQSARQRQGHVVLRS*PLQQGRGSTGPLVP Trigger: GGGGACAAGAGGCCCAGTACTTCCTCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCACGTGGCCTTGTCGCTGTCTTGCACTCTGGTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS TCA 90 bp | TCCGAACGCGCTCCCAGACGAAGTTGCCCTCCAGCGGCGTCTCCGTaGCGAAGTCAAAGTTCCACCGTTCTCGGGCCTCCTGGAGACAGC | + |
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Preference number: 5 (lower is better) Translates to: SERAPRRSCPPAASP*RSQSSTVLGPPGDS Trigger: GCTGTCTCCAGGAGGCCCGAGAACGGTGGAACTTTGACTTCGTCACGGAGACGCCGCTGGAGGGCAACTTCGTCTGGGAGCGCGTTCGGA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS CCA 90 bp | GGCGTCTCCGTGACGAAGTCAAAGTTCCACCGTTCTCGGGCCTCCTaGAGACAGCCCGCCATGAGCGCATCGCAATCACGGCGCAACTGC | + |
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Preference number: 5 (lower is better) Translates to: GVSVTKSKFHRSRAS*RQPAMSASQSRRNC Trigger: GCAGTTGCGCCGTGATTGCGATGCGCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACGGTGGAACTTTGACTTCGTCACGGAGACGCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS TCA 90 bp | AGTCAAAGTTCCACCGTTCTCGGGCCTCCTGGAGACAGCCCGCCATaGGCGCATCGCAATCACGGCGCAACTGCTCACTGTCCACGGGAC | + |
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Preference number: 5 (lower is better) Translates to: SQSSTVLGPPGDSPP*AHRNHGATAHCPRD Trigger: GTCCCGTGGACAGTGAGCAGTTGCGCCGTGATTGCGATGCGCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACGGTGGAACTTTGACT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS GCA 90 bp | TCCTGGAGACAGCCCGCCATGAGCGCATCGCAATCACGGCGCAACTaGTCACTGTCCACGGGACCGAAGAGACAACGGCACACTTTGCTC | + |
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Preference number: 5 (lower is better) Translates to: SWRQPAMSASQSRRN*SLSTGPKRQRHTLL Trigger: GAGCAAAGTGTGCCGTTGTCTCTTCGGTCCCGTGGACAGTGAGCAGTTGCGCCGTGATTGCGATGCGCTCATGGCGGGCTGTCTCCAGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS CAA 72 bp | GGCCCCTGCAGCAGGGCAGAGGAAGTACTGGGCCTCTaGTCCCCTCCCAGGTCGTCACGGCTGCGGGACCCA | + |
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Preference number: 6 (lower is better) Translates to: GPCSRAEEVLGL*SPPRSSRLRDP Trigger: TGGGTCCCGCAGCCGTGACGACCTGGGAGGGGACAAGAGGCCCAGTACTTCCTCTGCCCTGCTGCAGGGGCC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS GCA 72 bp | AGCGACAAGGCCACGTGGTCCTCCGGAGCTGGCCCCTaGAGCAGGGCAGAGGAAGTACTGGGCCTCTTGTCC | + |
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Preference number: 6 (lower is better) Translates to: SDKATWSSGAGP*SRAEEVLGLLS Trigger: GGACAAGAGGCCCAGTACTTCCTCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCACGTGGCCTTGTCGCT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS CCA 72 bp | GCAAGACAGCGACAAGGCCACGTGGTCCTCCGGAGCTaGCCCCTGCAGCAGGGCAGAGGAAGTACTGGGCCT | + |
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Preference number: 6 (lower is better) Translates to: ARQRQGHVVLRS*PLQQGRGSTGP Trigger: AGGCCCAGTACTTCCTCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCACGTGGCCTTGTCGCTGTCTTGC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS CCA 72 bp | TCAGACACCAGAGTGCAAGACAGCGACAAGGCCACGTaGTCCTCCGGAGCTGGCCCCTGCAGCAGGGCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SDTRVQDSDKAT*SSGAGPCSRAE Trigger: CTCTGCCCTGCTGCAGGGGCCAGCTCCGGAGGACCACGTGGCCTTGTCGCTGTCTTGCACTCTGGTGTCTGA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS CAA 72 bp | GGCAGCCCTAGGCTCCGAACGCGCTCCCAGACGAAGTaGCCCTCCAGCGGCGTCTCCGTGACGAAGTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: GSPRLRTRSQTK*PSSGVSVTKSK Trigger: CTTTGACTTCGTCACGGAGACGCCGCTGGAGGGCAACTTCGTCTGGGAGCGCGTTCGGAGCCTAGGGCTGCC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS TCA 72 bp | TCCACCGTTCTCGGGCCTCCTGGAGACAGCCCGCCATaGGCGCATCGCAATCACGGCGCAACTGCTCACTGT | + |
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Preference number: 6 (lower is better) Translates to: STVLGPPGDSPP*AHRNHGATAHC Trigger: ACAGTGAGCAGTTGCGCCGTGATTGCGATGCGCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACGGTGGA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS GCA 72 bp | CAGCCCGCCATGAGCGCATCGCAATCACGGCGCAACTaGTCACTGTCCACGGGACCGAAGAGACAACGGCAC | + |
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Preference number: 6 (lower is better) Translates to: QPAMSASQSRRN*SLSTGPKRQRH Trigger: GTGCCGTTGTCTCTTCGGTCCCGTGGACAGTGAGCAGTTGCGCCGTGATTGCGATGCGCTCATGGCGGGCTG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS GCA 72 bp | CACCCGGGGAATCTTCAGGCCGCTCAGACACCAGAGTaGAAGACAGCGACAAGGCCACGTGGTCCTCCGGAG | + |
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Preference number: 6 (lower is better) Translates to: HPGNLQAAQTPE*KTATRPRGPPE Trigger: CTCCGGAGGACCACGTGGCCTTGTCGCTGTCTTGCACTCTGGTGTCTGAGCGGCCTGAAGATTCCCCGGGTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS TCA 72 bp | GCTCCCAGACGAAGTTGCCCTCCAGCGGCGTCTCCGTaGCGAAGTCAAAGTTCCACCGTTCTCGGGCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: APRRSCPPAASP*RSQSSTVLGPP Trigger: AGGAGGCCCGAGAACGGTGGAACTTTGACTTCGTCACGGAGACGCCGCTGGAGGGCAACTTCGTCTGGGAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS TCA 72 bp | AAATCTGTCAGGCTGGTCTGCCTCCGTTTTCGGCCCTaGGATGTTCCGGGCCCACCCGGGGAATCTTCAGGC | + |
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Preference number: 6 (lower is better) Translates to: KSVRLVCLRFRP*DVPGPPGESSG Trigger: GCCTGAAGATTCCCCGGGTGGGCCCGGAACATCTCAGGGCCGAAAACGGAGGCAGACCAGCCTGACAGATTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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| CDS CCA 72 bp | GTGACGAAGTCAAAGTTCCACCGTTCTCGGGCCTCCTaGAGACAGCCCGCCATGAGCGCATCGCAATCACGG | + |
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Preference number: 6 (lower is better) Translates to: VTKSKFHRSRAS*RQPAMSASQSR Trigger: CCGTGATTGCGATGCGCTCATGGCGGGCTGTCTCCAGGAGGCCCGAGAACGGTGGAACTTTGACTTCGTCAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000023829.8 ENSMUST00000119901.9 ENSMUST00000122348.3 ENSMUST00000233296.2 |
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