Pregenerated sensors for CDKL4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000033966Ensembl transcript IDs: ENSMUST00000086545.5, ENSMUST00000234349.2, ENSMUST00000234602.2
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCACAAACAGCAGCCAGCAGATCTGGGTCTGCTTCAGGACACCACTaGTCGGCTGAAGTGAGACGGCTACGTGGAAATCTTTCCCTAGGT | + |
|
Preference number: 1 (lower is better) Translates to: PQTAASRSGSASGHH*SAEVRRLRGNLSLG Trigger: ACCTAGGGAAAGATTTCCACGTAGCCGTCTCACTTCAGCCGACCAGTGGTGTCCTGAAGCAGACCCAGATCTGCTGGCTGCTGTTTGTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR TCA 90 bp | CTTTTGCTGAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTTaGCCTTGGACTCTCCTTTCCTGCCCCTTGATACAAACACGGACC | + |
|
Preference number: 1 (lower is better) Translates to: LLLKSLNSLCSLGWP*PWTLLSCPLIQTRT Trigger: GGTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTCAGCAAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR GCA 90 bp | TTTAGAGAAATGGCCGGTGGCTACCTTCAACGACTCCTATTAGTTTaGTTTTCTTTTGCTGAAGAGCCTCAACTCACTATGCAGCCTCGG | + |
|
Preference number: 1 (lower is better) Translates to: FREMAGGYLQRLLLV*FSFAEEPQLTMQPR Trigger: CCGAGGCTGCATAGTGAGTTGAGGCTCTTCAGCAAAAGAAAAGCAAACTAATAGGAGTCGTTGAAGGTAGCCACCGGCCATTTCTCTAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR GCA 90 bp | ACTCATCCTTTGATGTGTTCATCTGTGATGAGGTCAGAAATGAAATaGCAAGATACTCACCAGTGTGGAGAATATTTAGAACACTTCTGC | + |
|
Preference number: 1 (lower is better) Translates to: THPLMCSSVMRSEMK*QDTHQCGEYLEHFC Trigger: GCAGAAGTGTTCTAAATATTCTCCACACTGGTGAGTATCTTGGCATTTCATTTCTGACCTCATCACAGATGAACACATCAAAGGATGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR GCA 90 bp | CCTTTCACAAGGTTTAACGCAGCTAAAACAGGTAGAATTCTAAGATaGAAAGTGATACATACTCATCCTTTGATGTGTTCATCTGTGATG | + |
|
Preference number: 1 (lower is better) Translates to: PFTRFNAAKTGRILR*KVIHTHPLMCSSVM Trigger: CATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAATTCTACCTGTTTTAGCTGCGTTAAACCTTGTGAAAGG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CCA 90 bp | AACCAGGATAGCCTTAGAGTGGGTGGGCAGCCAGGGATCCAGGGGCGTTACTGTAGCAGCCAGCAGATCTaGGTCTGCTTCAGGACACCA | + |
|
Preference number: 2 (lower is better) Translates to: NQDSLRVGGQPGIQGRYCSSQQI*VCFRTP Trigger: TGGTGTCCTGAAGCAGACCCAGATCTGCTGGCTGCT...ACAGTAACGCCCCTGGATCCCTGGCTGCCCACCCACTCTAAGGCTATCCTGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CCA 90 bp | GAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTTGACCTTGGACTCTCCTAGGATAGCCTTAGAGTaGGTGGGCAGCCAGGGATCC | + |
|
Preference number: 2 (lower is better) Translates to: EEPQLTMQPRLALTLDSPRIALE*VGSQGS Trigger: GGATCCCTGGCTGCCCACCCACTCTAAGGCTATCCT...AGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CCA 90 bp | GAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTTGACCTTGGACTCTCCTGAGATGGAGCTGGCGTaGAAAAAGCACAGGGGAGGA | + |
|
Preference number: 2 (lower is better) Translates to: EEPQLTMQPRLALTLDSPEMELA*KKHRGG Trigger: TCCTCCCCTGTGCTTTTTCCACGCCAGCTCCATCTC...AGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CAA 90 bp | GCTGAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTTGACCTaGGACTCTCCTTTCCTGCCCCTTGATACAAACACGGACCTTCAT | + |
|
Preference number: 2 (lower is better) Translates to: AEEPQLTMQPRLALT*DSPFLPLDTNTDLH Trigger: ATGAAGGTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | CGGCTGGCCTTGACCTTGGACTCTCCTTTCCTGCCCCTTGATACAAACACGGACAACCAGAGGGTTTCCTaGACACAGGCAAGAACTCCA | + |
|
Preference number: 2 (lower is better) Translates to: RLALTLDSPFLPLDTNTDNQRVS*TQARTP Trigger: TGGAGTTCTTGCCTGTGTGCAGGAAACCCTCTGGTT...GTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CAA 90 bp | TCTTTTGCTGAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTaGACCTTGGACTCTCCTTTCCTGCCCCTTGATACAAACACGGAC | + |
|
Preference number: 2 (lower is better) Translates to: SFAEEPQLTMQPRLA*TLDSPFLPLDTNTD Trigger: GTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTCAGCAAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | AACCAGGATAGCCTTAGAGTGGGTGGGCAGCCAGGGATCCAGGGGCGTTACTGTAAGGAGACTAGCATCTaGTGTGGAGTCAAGGGTAAA | + |
|
Preference number: 2 (lower is better) Translates to: NQDSLRVGGQPGIQGRYCKETSI*CGVKGK Trigger: TTTACCCTTGACTCCACAGCAGATGCTAGTCTCCTT...ACAGTAACGCCCCTGGATCCCTGGCTGCCCACCCACTCTAAGGCTATCCTGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | CGGCTGGCCTTGACCTTGGACTCTCCTTTCCTGCCCCTTGATACAAACACGGACCTGTATTTGAGATGCTaGGGATTCCCGTCTTATTCC | + |
|
Preference number: 2 (lower is better) Translates to: RLALTLDSPFLPLDTNTDLYLRC*GFPSYS Trigger: GGAATAAGACGGGAATCCTCAGCATCTCAAATACAG...GTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | GAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTTGACCTTGGACTCTCCTCTCCTGCTTGTCTTTTaGTTTTCACACACGAGGTTT | + |
|
Preference number: 2 (lower is better) Translates to: EEPQLTMQPRLALTLDSPLLLVF*FSHTRF Trigger: AAACCTCGTGTGTGAAAATCAAAAGACAAGCAGGAG...AGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CCA 90 bp | CGGCTGGCCTTGACCTTGGACTCTCCTTTCCTGCCCCTTGATACAAACACGGACTGTTTTCTTCCATGCTaGAGACAAAACCAGAGGGTT | + |
|
Preference number: 2 (lower is better) Translates to: RLALTLDSPFLPLDTNTDCFLPC*RQNQRV Trigger: AACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACA...GTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | CGGCTGGCCTTGACCTTGGACTCTCCTTTCCTGCCCCTTGATACAAACACGGACAGGTCAGAAATGAAATaGCAAGATACTCACCAGTGT | + |
|
Preference number: 2 (lower is better) Translates to: RLALTLDSPFLPLDTNTDRSEMK*QDTHQC Trigger: ACACTGGTGAGTATCTTGGCATTTCATTTCTGACCT...GTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CCA 90 bp | TCCATGCTGGAGACAAAACCAGAGGGTTTCCTGCACACAGGCAAGAACTCCACACTATGTAGCTTAGGCTaGCCTCCTGCTTGTCTTTTG | + |
|
Preference number: 2 (lower is better) Translates to: SMLETKPEGFLHTGKNSTLCSLG*PPACLL Trigger: CAAAAGACAAGCAGGAGGCCAGCCTAAGCTACATAG...TGTGGAGTTCTTGCCTGTGTGCAGGAAACCCTCTGGTTTTGTCTCCAGCATGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | GTGACTATAGCTGTTTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTCCTGCAGAAGCCCGGCTCTGGTaGAACTGGAAGCATCTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: VTIAVFFHAGDKTRGFPAEARLW*NWKHLF Trigger: AAAGAGATGCTTCCAGTTTCACCAGAGCCGGGCTTC...TGCAGGAAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | ATAGTTTATACAATCAGCAGCAGGGACTTGGGTTTAAGCAACCTTAGAGAATGGGAGAAGAAACTCCAGTaGGAGGGCTCAGGGCCATCC | + |
|
Preference number: 2 (lower is better) Translates to: IVYTISSRDLGLSNLREWEKKLQ*EGSGPS Trigger: GGATGGCCCTGAGCCCTCTCACTGGAGTTTCTTCTC...CCATTCTCTAAGGTTGCTTAAACCCAAGTCCCTGCTGCTGATTGTATAAACTAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | GGTGGTCGATTCCTTGTAGTCTGTCCACTAACTGGTCACGTTTGGAATTTTCTCCTGTATTTGAGATGCTaGGGATTCCCGTCTTATTCC | + |
|
Preference number: 2 (lower is better) Translates to: GGRFLVVCPLTGHVWNFLLYLRC*GFPSYS Trigger: GGAATAAGACGGGAATCCTCAGCATCTCAAATACAG...GAGAAAATTCCAAACGTGACCAGTTAGTGGACAGACTACAAGGAATCGACCACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | TATGTAGAACTTATTCATAGTTTATACAATCAGCAGCAGGGACTTGGGTTTAAGGAGAAGAAACTCCAGTaGGAGGGCTCAGGGCCATCC | + |
|
Preference number: 2 (lower is better) Translates to: YVELIHSLYNQQQGLGFKEKKLQ*EGSGPS Trigger: GGATGGCCCTGAGCCCTCTCACTGGAGTTTCTTCTC...CTTAAACCCAAGTCCCTGCTGCTGATTGTATAAACTATGAATAAGTTCTACATA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | GTAGGTGTGACTATAGCTGTTTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTAAGGAGACTAGCATCTaGTGTGGAGTCAAGGGTAAA | + |
|
Preference number: 2 (lower is better) Translates to: VGVTIAVFFHAGDKTRGFKETSI*CGVKGK Trigger: TTTACCCTTGACTCCACAGCAGATGCTAGTCTCCTT...AAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCACACCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | ACAAGGTTTAACGCAGCTAAAACAGGTAGAATTCTAAGATGCAAAGTGATACATCAGCAGATCTGGGTCTaGTTCAGGACACCACTGGTC | + |
|
Preference number: 2 (lower is better) Translates to: TRFNAAKTGRILRCKVIHQQIWV*FRTPLV Trigger: GACCAGTGGTGTCCTGAAGCAGACCCAGATCTGCTG...ATGTATCACTTTGCATCTTAGAATTCTACCTGTTTTAGCTGCGTTAAACCTTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CCA 90 bp | ATTCTAAGATGCAAAGTGATACATACTCATCCTTTGATGTGTTCATCTGTGATGGAGATGGAGCTGGCGTaGAAAAAGCACAGGGGAGGA | + |
|
Preference number: 2 (lower is better) Translates to: ILRCKVIHTHPLMCSSVMEMELA*KKHRGG Trigger: TCCTCCCCTGTGCTTTTTCCACGCCAGCTCCATCTC...CATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | ATAGTTTATACAATCAGCAGCAGGGACTTGGGTTTAAGCAACCTTAGAGAATGGCTGTATTTGAGATGCTaGGGATTCCCGTCTTATTCC | + |
|
Preference number: 2 (lower is better) Translates to: IVYTISSRDLGLSNLREWLYLRC*GFPSYS Trigger: GGAATAAGACGGGAATCCTCAGCATCTCAAATACAG...CCATTCTCTAAGGTTGCTTAAACCCAAGTCCCTGCTGCTGATTGTATAAACTAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | TGTCCTACATATGTAGAACTTATTCATAGTTTATACAATCAGCAGCAGGGACTTGAAGCCCGGCTCTGGTaGAACTGGAAGCATCTCTTT | + |
|
Preference number: 2 (lower is better) Translates to: CPTYVELIHSLYNQQQGLEARLW*NWKHLF Trigger: AAAGAGATGCTTCCAGTTTCACCAGAGCCGGGCTTC...AAGTCCCTGCTGCTGATTGTATAAACTATGAATAAGTTCTACATATGTAGGACA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | GTAGGTGTGACTATAGCTGTTTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTCATCTCTTTCGGATGTaGCATTTTGATACTGCAACA | + |
|
Preference number: 2 (lower is better) Translates to: VGVTIAVFFHAGDKTRGFHLFRM*HFDTAT Trigger: TGTTGCAGTATCAAAATGGCACATCCGAAAGAGATG...AAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCACACCTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | GGTGGTCGATTCCTTGTAGTCTGTCCACTAACTGGTCACGTTTGGAATTTTCTCCTTTCACGATTGCCATaGCACAATAACACAAATGTA | + |
|
Preference number: 2 (lower is better) Translates to: GGRFLVVCPLTGHVWNFLLSRLP*HNNTNV Trigger: TACATTTGTGTTATTGTGGCATGGCAATCGTGAAAG...GAGAAAATTCCAAACGTGACCAGTTAGTGGACAGACTACAAGGAATCGACCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | TGGCCTTGGACTGCATATGTAGTCAAGGACAGTGACTTTGAATTTCTACTTTCATTTCTCTCGCCCCTCTaGCTCTTTCTCATATGTACA | + |
|
Preference number: 2 (lower is better) Translates to: WPWTAYVVKDSDFEFLLSFLSPL*LFLICT Trigger: TGTACATATGAGAAAGAGGCAGAGGGGCGAGAGAAA...TGAAAGTAGAAATTCAAAGTCACTGTCCTTGACTACATATGCAGTCCAAGGCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | ATAGTTTATACAATCAGCAGCAGGGACTTGGGTTTAAGCAACCTTAGAGAATGGCTTAGGCTGGCCTCCTaGTTGTCTTTTGATTTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: IVYTISSRDLGLSNLREWLRLAS*LSFDFH Trigger: GTGAAAATCAAAAGACAAGCAGGAGGCCAGCCTAAG...CCATTCTCTAAGGTTGCTTAAACCCAAGTCCCTGCTGCTGATTGTATAAACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | ATTCTAAGATGCAAAGTGATACATACTCATCCTTTGATGTGTTCATCTGTGATGCTTAGGCTGGCCTCCTaGTTGTCTTTTGATTTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: ILRCKVIHTHPLMCSSVMLRLAS*LSFDFH Trigger: GTGAAAATCAAAAGACAAGCAGGAGGCCAGCCTAAG...CATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR TCA 90 bp | ATTCTAAGATGCAAAGTGATACATACTCATCCTTTGATGTGTTCATCTGTGATGCTCCTGCTTGTCTTTTaGTTTTCACACACGAGGTTT | + |
|
Preference number: 2 (lower is better) Translates to: ILRCKVIHTHPLMCSSVMLLLVF*FSHTRF Trigger: AAACCTCGTGTGTGAAAATCAAAAGACAAGCAGGAG...CATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | AGTGACTTTGAATTTCTACTTTCAGGTAGGTGTGACTATAGCTGTTTTCTTCCACATCTCTTTCGGATGTaGCATTTTGATACTGCAACA | + |
|
Preference number: 2 (lower is better) Translates to: SDFEFLLSGRCDYSCFLPHLFRM*HFDTAT Trigger: TGTTGCAGTATCAAAATGGCACATCCGAAAGAGATG...TGGAAGAAAACAGCTATAGTCACACCTACCTGAAAGTAGAAATTCAAAGTCACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CAA 90 bp | AAAACAGGTAGAATTCTAAGATGCAAAGTGATACATACTCATCCTTaGATGTGTTCATCTGTGATGAGGTCAGAAATGAAATGCCAAGAT | + |
|
Preference number: 2 (lower is better) Translates to: KTGRILRCKVIHTHP*MCSSVMRSEMKCQD Trigger: ATCTTGGCATTTCATTTCTGACCTCATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAATTCTACCTGTTTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR GCA 90 bp | ATTCTAAGATGCAAAGTGATACATACTCATCCTTTGATGTGTTCATCTGTGATGCTTTCACGATTGCCATaGCACAATAACACAAATGTA | + |
|
Preference number: 2 (lower is better) Translates to: ILRCKVIHTHPLMCSSVMLSRLP*HNNTNV Trigger: TACATTTGTGTTATTGTGGCATGGCAATCGTGAAAG...CATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CCA 90 bp | AGTGACTTTGAATTTCTACTTTCAGGTAGGTGTGACTATAGCTGTTTTCTTCCAAGATACTCACCAGTGTaGAGAATATTTAGAACACTT | + |
|
Preference number: 2 (lower is better) Translates to: SDFEFLLSGRCDYSCFLPRYSPV*RIFRTL Trigger: AAGTGTTCTAAATATTCTCCACACTGGTGAGTATCT...TGGAAGAAAACAGCTATAGTCACACCTACCTGAAAGTAGAAATTCAAAGTCACT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CCA 72 bp | GCAGCCAGCAGATCTGGGTCTGCTTCAGGACACCACTaGTCGGCTGAAGTGAGACGGCTACGTGGAAATCTT | + |
|
Preference number: 3 (lower is better) Translates to: AASRSGSASGHH*SAEVRRLRGNL Trigger: AAGATTTCCACGTAGCCGTCTCACTTCAGCCGACCAGTGGTGTCCTGAAGCAGACCCAGATCTGCTGGCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR CCA 72 bp | GTGGGCAGCCAGGGATCCAGGGGCGTTACTGTGGTATaGTGGTCGATTCCTTGTAGTCTGTCCACTAACTGG | + |
|
Preference number: 3 (lower is better) Translates to: VGSQGSRGVTVV*WSIPCSLSTNW Trigger: CCAGTTAGTGGACAGACTACAAGGAATCGACCACCATACCACAGTAACGCCCCTGGATCCCTGGCTGCCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR CCA 72 bp | AGTGGGTGGGCAGCCAGGGATCCAGGGGCGTTACTGTaGTATGGTGGTCGATTCCTTGTAGTCTGTCCACTA | + |
|
Preference number: 3 (lower is better) Translates to: SGWAARDPGALL*YGGRFLVVCPL Trigger: TAGTGGACAGACTACAAGGAATCGACCACCATACCACAGTAACGCCCCTGGATCCCTGGCTGCCCACCCACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR CCA 72 bp | CACGGACCTTCATGCCTGGAGAAGTGTAGCCCAGCGTaGCCTTGGACTGCATATGTAGTCAAGGACAGTGAC | + |
|
Preference number: 3 (lower is better) Translates to: HGPSCLEKCSPA*PWTAYVVKDSD Trigger: GTCACTGTCCTTGACTACATATGCAGTCCAAGGCCACGCTGGGCTACACTTCTCCAGGCATGAAGGTCCGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR TCA 72 bp | GCTGGCCTTGACCTTGGACTCTCCTTTCCTGCCCCTTaGTACAAACACGGACCTTCATGCCTGGAGAAGTGT | + |
|
Preference number: 3 (lower is better) Translates to: AGLDLGLSFPAP*YKHGPSCLEKC Trigger: ACACTTCTCCAGGCATGAAGGTCCGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CCA 72 bp | CCTTCATGCCTGGAGAAGTGTAGCCCAGCGTGGCCTTaGACTGCATATGTAGTCAAGGACAGTGACTTTGAA | + |
|
Preference number: 3 (lower is better) Translates to: PSCLEKCSPAWP*TAYVVKDSDFE Trigger: TTCAAAGTCACTGTCCTTGACTACATATGCAGTCCAAGGCCACGCTGGGCTACACTTCTCCAGGCATGAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR TCA 72 bp | CCTTCAACGACTCCTATTAGTTTGCTTTTCTTTTGCTaGAGAGCCTCAACTCACTATGCAGCCTCGGCTGGC | + |
|
Preference number: 3 (lower is better) Translates to: PSTTPISLLFFC*RASTHYAASAG Trigger: GCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTCAGCAAAAGAAAAGCAAACTAATAGGAGTCGTTGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR GCA 72 bp | TTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTCCTaGACACAGGCAAGAACTCCACAGGTTCAGTTATGG | + |
|
Preference number: 3 (lower is better) Translates to: FLPCWRQNQRVS*TQARTPQVQLW Trigger: CCATAACTGAACCTGTGGAGTTCTTGCCTGTGTGCAGGAAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CCA 72 bp | TCAGGTAGGTGTGACTATAGCTGTTTTCTTCCATGCTaGAGACAAAACCAGAGGGTTTCCTGCACACAGGCA | + |
|
Preference number: 3 (lower is better) Translates to: SGRCDYSCFLPC*RQNQRVSCTQA Trigger: TGCCTGTGTGCAGGAAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCACACCTACCTGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CAA 90 bp | TGGCCTTGGACTGCATATGTAGTCAAGGACAGTGACTTTGAATTTCTACTTTCATGTAGAGAAAAGGCCTaGCTATGTAGCTTAGGCTGG | + |
|
Preference number: 3 (lower is better) Translates to: WPWTAYVVKDSDFEFLLSCREKA*LCSLGW Trigger: CCAGCCTAAGCTACATAGCAAGGCCTTTTCTCTACA...TGAAAGTAGAAATTCAAAGTCACTGTCCTTGACTACATATGCAGTCCAAGGCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CAA 90 bp | GGTAGGTGTGACTATAGCTGTTTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTTCGGATGTGCCATTTaGATACTGCAACATTTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: GRCDYSCFLPCWRQNQRVFGCAI*ILQHLK Trigger: CTTTAAATGTTGCAGTATCAAAATGGCACATCCGAA...AACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCACACCTACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CAA 90 bp | GGTGGTCGATTCCTTGTAGTCTGTCCACTAACTGGTCACGTTTGGAATTTTCTCTTCGGATGTGCCATTTaGATACTGCAACATTTAAAG | + |
|
Preference number: 3 (lower is better) Translates to: GGRFLVVCPLTGHVWNFLFGCAI*ILQHLK Trigger: CTTTAAATGTTGCAGTATCAAAATGGCACATCCGAA...GAGAAAATTCCAAACGTGACCAGTTAGTGGACAGACTACAAGGAATCGACCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CAA 90 bp | ATAGTTTATACAATCAGCAGCAGGGACTTGGGTTTAAGCAACCTTAGAGAATGGCCTCCTGCTTGTCTTTaGATTTTCACACACGAGGTT | + |
|
Preference number: 3 (lower is better) Translates to: IVYTISSRDLGLSNLREWPPACL*IFTHEV Trigger: AACCTCGTGTGTGAAAATCAAAAGACAAGCAGGAGG...CCATTCTCTAAGGTTGCTTAAACCCAAGTCCCTGCTGCTGATTGTATAAACTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR-3UTR CAA 90 bp | ACAAGGTTTAACGCAGCTAAAACAGGTAGAATTCTAAGATGCAAAGTGATACATCCTCCTGCTTGTCTTTaGATTTTCACACACGAGGTT | + |
|
Preference number: 3 (lower is better) Translates to: TRFNAAKTGRILRCKVIHPPACL*IFTHEV Trigger: AACCTCGTGTGTGAAAATCAAAAGACAAGCAGGAGG...ATGTATCACTTTGCATCTTAGAATTCTACCTGTTTTAGCTGCGTTAAACCTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | CTGGCTGCACGGAGAAGAAACTCCAGTGAGAGGGCTCAGGGCCATCCCCTCCACATAAGAGGCAGCAGTTaGTTCTGCTGGCGCCTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: LAARRRNSSERAQGHPLHIRGSS*FCWRLR Trigger: CCGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTAT...GTGGAGGGGATGGCCCTGAGCCCTCTCACTGGAGTTTCTTCTCCGTGCAGCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | TGGAGCTGGCGTGGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTGCCATAAGAGGCAGCAGTTaGTTCTGCTGGCGCCTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: WSWRGKSTGEEPVVIRGAIRGSS*FCWRLR Trigger: CCGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTAT...GGCACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCCACGCCAGCTCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR GCA 90 bp | GGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTGCCCTGGTGTTCACGACCCGTCAGGAGCTCTaGAAAAACACAGCCGACGGC | + |
|
Preference number: 4 (lower is better) Translates to: GKSTGEEPVVIRGALVFTTRQEL*KNTADG Trigger: GCCGTCGGCTGTGTTTTTGCAGAGCTCCTGACGGGT...CGTGAACACCAGGGCACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | CTGGCTGCACGGAGAAGAAACTCCAGTGAGAGGGCTCAGGGCCATCCCCTCCACCTCGGTACCACCTGGTaGCAACATAGTCTGTGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: LAARRRNSSERAQGHPLHLGTTW*QHSLCR Trigger: CCTACACAGACTATGTTGCCACCAGGTGGTACCGAG...GTGGAGGGGATGGCCCTGAGCCCTCTCACTGGAGTTTCTTCTCCGTGCAGCCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | GGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTGCCCTGGTGTTCACGATAAGAGGCAGCAGTTaGTTCTGCTGGCGCCTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: GKSTGEEPVVIRGALVFTIRGSS*FCWRLR Trigger: CCGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTAT...CGTGAACACCAGGGCACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | GGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTGCCCTGGTGTTCACGTCCTTCCATCAGGTGTaGGGGAGATGTGGCTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: GKSTGEEPVVIRGALVFTSFHQV*GRCGFQ Trigger: CTGGAAGCCACATCTCCCCCACACCTGATGGAAGGA...CGTGAACACCAGGGCACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | AGGAGATGGAGCTGGCGTGGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGATCCTTCCATCAGGTGTaGGGGAGATGTGGCTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RRWSWRGKSTGEEPVVIRSFHQV*GRCGFQ Trigger: CTGGAAGCCACATCTCCCCCACACCTGATGGAAGGA...TCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCCACGCCAGCTCCATCTCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | GAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTTGACCTTGGACTCTCCTCTCGGTACCACCTGGTaGCAACATAGTCTGTGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: EEPQLTMQPRLALTLDSPLGTTW*QHSLCR Trigger: CCTACACAGACTATGTTGCCACCAGGTGGTACCGAG...AGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CAA 72 bp | CCTCAACTCACTATGCAGCCTCGGCTGGCCTTGACCTaGGACTCTCCTTTCCTGCCCCTTGATACAAACACG | + |
|
Preference number: 4 (lower is better) Translates to: PQLTMQPRLALT*DSPFLPLDTNT Trigger: CGTGTTTGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| 3UTR CAA 72 bp | GAAGAGCCTCAACTCACTATGCAGCCTCGGCTGGCCTaGACCTTGGACTCTCCTTTCCTGCCCCTTGATACA | + |
|
Preference number: 4 (lower is better) Translates to: EEPQLTMQPRLA*TLDSPFLPLDT Trigger: TGTATCAAGGGGCAGGAAAGGAGAGTCCAAGGTCAAGGCCAGCCGAGGCTGCATAGTGAGTTGAGGCTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR GCA 90 bp | TCCATGCTGGAGACAAAACCAGAGGGTTTCCTGCACACAGGCAAGAACTCCACAACCCGTCAGGAGCTCTaGAAAAACACAGCCGACGGC | + |
|
Preference number: 4 (lower is better) Translates to: SMLETKPEGFLHTGKNSTTRQEL*KNTADG Trigger: GCCGTCGGCTGTGTTTTTGCAGAGCTCCTGACGGGT...TGTGGAGTTCTTGCCTGTGTGCAGGAAACCCTCTGGTTTTGTCTCCAGCATGGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | TGGAGCTGGCGTGGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTGCCATCAGAAACTCCGTTTaGGTTTCTCTCCAGCTCGTT | + |
|
Preference number: 4 (lower is better) Translates to: WSWRGKSTGEEPVVIRGAIRNSV*VSLQLV Trigger: AACGAGCTGGAGAGAAACCCAAACGGAGTTTCTGAT...GGCACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCCACGCCAGCTCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | CTGGCTGCACGGAGAAGAAACTCCAGTGAGAGGGCTCAGGGCCATCCCCTCCACCACAGGCTGAACATTTaGGAATTTTTCTTCAAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: LAARRRNSSERAQGHPLHHRLNI*EFFFKS Trigger: ACTCTTGAAGAAAAATTCTCAAATGTTCAGCCTGTG...GTGGAGGGGATGGCCCTGAGCCCTCTCACTGGAGTTTCTTCTCCGTGCAGCCAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | TCCATGCTGGAGACAAAACCAGAGGGTTTCCTGCACACAGGCAAGAACTCCACACTCGGTACCACCTGGTaGCAACATAGTCTGTGTAGG | + |
|
Preference number: 4 (lower is better) Translates to: SMLETKPEGFLHTGKNSTLGTTW*QHSLCR Trigger: CCTACACAGACTATGTTGCCACCAGGTGGTACCGAG...TGTGGAGTTCTTGCCTGTGTGCAGGAAACCCTCTGGTTTTGTCTCCAGCATGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | GGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTGCCCTGGTGTTCACGATGCCGCGGAAAAACTaGTTACTCCTAAAGATAGAC | + |
|
Preference number: 4 (lower is better) Translates to: GKSTGEEPVVIRGALVFTMPRKN*LLLKID Trigger: GTCTATCTTTAGGAGTAACCAGTTTTTCCGCGGCAT...CGTGAACACCAGGGCACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR CAA 72 bp | TTGCTATGTAGCTTAGGCTGGCCTCCTGCTTGTCTTTaGATTTTCACACACGAGGTTTCTCTCGCCCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LLCSLGWPPACL*IFTHEVSLAPL Trigger: CAGAGGGGCGAGAGAAACCTCGTGTGTGAAAATCAAAAGACAAGCAGGAGGCCAGCCTAAGCTACATAGCAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | GGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTGCCCTGGTGTTCACGTTATCATCCCTTGCTTaGTTATTAGGATGTTTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: GKSTGEEPVVIRGALVFTLSSLA*LLGCFQ Trigger: CTGAAAACATCCTAATAACCAAGCAAGGGATGATAA...CGTGAACACCAGGGCACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | GTAGGTGTGACTATAGCTGTTTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTTCCTTCCATCAGGTGTaGGGGAGATGTGGCTTCCAG | + |
|
Preference number: 4 (lower is better) Translates to: VGVTIAVFFHAGDKTRGFSFHQV*GRCGFQ Trigger: CTGGAAGCCACATCTCCCCCACACCTGATGGAAGGA...AAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCACACCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | AGGAAGCCCGGCTCTGGTGAAACTGGAAGCATCTCTTTCGGATGTGCCATTTTGATTTGTTTCTGCACTTaGATACAACGCCATAAGACC | + |
|
Preference number: 4 (lower is better) Translates to: RKPGSGETGSISFGCAILICFCT*IQRHKT Trigger: GGTCTTATGGCGTTGTATTCAAGTGCAGAAACAAAT...CAAAATGGCACATCCGAAAGAGATGCTTCCAGTTTCACCAGAGCCGGGCTTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | AGGAAGCCCGGCTCTGGTGAAACTGGAAGCATCTCTTTCGGATGTGCCATTTTGCTTAAAGCCACAGGCTaGACATTTGAGAATTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RKPGSGETGSISFGCAILLKATG*TFENFS Trigger: AGAAAAATTCTCAAATGTTCAGCCTGTGGCTTTAAG...CAAAATGGCACATCCGAAAGAGATGCTTCCAGTTTCACCAGAGCCGGGCTTCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | GGTGTGACTATAGCTGTTTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTCCTATCAGAAACTCCGTTTaGGTTTCTCTCCAGCTCGTT | + |
|
Preference number: 4 (lower is better) Translates to: GVTIAVFFHAGDKTRGFPIRNSV*VSLQLV Trigger: AACGAGCTGGAGAGAAACCCAAACGGAGTTTCTGAT...AGGAAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCACACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR GCA 90 bp | AGCATCTCTTTCGGATGTGCCATTTTGATACTGCAACATTTAAAGAGAATGTTTACCCGTCAGGAGCTCTaGAAAAACACAGCCGACGGC | + |
|
Preference number: 4 (lower is better) Translates to: SISFGCAILILQHLKRMFTRQEL*KNTADG Trigger: GCCGTCGGCTGTGTTTTTGCAGAGCTCCTGACGGGT...AAACATTCTCTTTAAATGTTGCAGTATCAAAATGGCACATCCGAAAGAGATGCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | GGTGTGACTATAGCTGTTTTCTTCCATGCTGGAGACAAAACCAGAGGGTTTCCTATTTGTTTCTGCACTTaGATACAACGCCATAAGACC | + |
|
Preference number: 4 (lower is better) Translates to: GVTIAVFFHAGDKTRGFPICFCT*IQRHKT Trigger: GGTCTTATGGCGTTGTATTCAAGTGCAGAAACAAAT...AGGAAACCCTCTGGTTTTGTCTCCAGCATGGAAGAAAACAGCTATAGTCACACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | TCACACACGAGGTTTCTCTCGCCCCTCTGCCTCTTTCTCATATGTACAAATAGACACAGGCTGAACATTTaGGAATTTTTCTTCAAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SHTRFLSPLCLFLICTNRHRLNI*EFFFKS Trigger: ACTCTTGAAGAAAAATTCTCAAATGTTCAGCCTGTG...TCTATTTGTACATATGAGAAAGAGGCAGAGGGGCGAGAGAAACCTCGTGTGTGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | TGGCCTTGGACTGCATATGTAGTCAAGGACAGTGACTTTGAATTTCTACTTTCAATCAGAAACTCCGTTTaGGTTTCTCTCCAGCTCGTT | + |
|
Preference number: 4 (lower is better) Translates to: WPWTAYVVKDSDFEFLLSIRNSV*VSLQLV Trigger: AACGAGCTGGAGAGAAACCCAAACGGAGTTTCTGAT...TGAAAGTAGAAATTCAAAGTCACTGTCCTTGACTACATATGCAGTCCAAGGCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | GGTGGTCGATTCCTTGTAGTCTGTCCACTAACTGGTCACGTTTGGAATTTTCTCTTATCATCCCTTGCTTaGTTATTAGGATGTTTTCAG | + |
|
Preference number: 4 (lower is better) Translates to: GGRFLVVCPLTGHVWNFLLSSLA*LLGCFQ Trigger: CTGAAAACATCCTAATAACCAAGCAAGGGATGATAA...GAGAAAATTCCAAACGTGACCAGTTAGTGGACAGACTACAAGGAATCGACCACC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | TGGCCTTGGACTGCATATGTAGTCAAGGACAGTGACTTTGAATTTCTACTTTCAATGCCGCGGAAAAACTaGTTACTCCTAAAGATAGAC | + |
|
Preference number: 4 (lower is better) Translates to: WPWTAYVVKDSDFEFLLSMPRKN*LLLKID Trigger: GTCTATCTTTAGGAGTAACCAGTTTTTCCGCGGCAT...TGAAAGTAGAAATTCAAAGTCACTGTCCTTGACTACATATGCAGTCCAAGGCCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CCA 90 bp | TATGTAGAACTTATTCATAGTTTATACAATCAGCAGCAGGGACTTGGGTTTAAGATGCCGCGGAAAAACTaGTTACTCCTAAAGATAGAC | + |
|
Preference number: 4 (lower is better) Translates to: YVELIHSLYNQQQGLGFKMPRKN*LLLKID Trigger: GTCTATCTTTAGGAGTAACCAGTTTTTCCGCGGCAT...CTTAAACCCAAGTCCCTGCTGCTGATTGTATAAACTATGAATAAGTTCTACATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | ATTCTAAGATGCAAAGTGATACATACTCATCCTTTGATGTGTTCATCTGTGATGCACAGGCTGAACATTTaGGAATTTTTCTTCAAGAGT | + |
|
Preference number: 4 (lower is better) Translates to: ILRCKVIHTHPLMCSSVMHRLNI*EFFFKS Trigger: ACTCTTGAAGAAAAATTCTCAAATGTTCAGCCTGTG...CATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAAT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | TGTCCTACATATGTAGAACTTATTCATAGTTTATACAATCAGCAGCAGGGACTTCTTAAAGCCACAGGCTaGACATTTGAGAATTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: CPTYVELIHSLYNQQQGLLKATG*TFENFS Trigger: AGAAAAATTCTCAAATGTTCAGCCTGTGGCTTTAAG...AAGTCCCTGCTGCTGATTGTATAAACTATGAATAAGTTCTACATATGTAGGACA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR TCA 90 bp | AAGCATCTCTTTCGGATGTGCCATTTTGATACTGCAACATTTAAAGAGAATGTTCTTAAAGCCACAGGCTaGACATTTGAGAATTTTTCT | + |
|
Preference number: 4 (lower is better) Translates to: KHLFRMCHFDTATFKENVLKATG*TFENFS Trigger: AGAAAAATTCTCAAATGTTCAGCCTGTGGCTTTAAG...AACATTCTCTTTAAATGTTGCAGTATCAAAATGGCACATCCGAAAGAGATGCTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| 3UTR CAA 72 bp | AGAATTCTAAGATGCAAAGTGATACATACTCATCCTTaGATGTGTTCATCTGTGATGAGGTCAGAAATGAAA | + |
|
Preference number: 4 (lower is better) Translates to: RILRCKVIHTHP*MCSSVMRSEMK Trigger: TTTCATTTCTGACCTCATCACAGATGAACACATCAAAGGATGAGTATGTATCACTTTGCATCTTAGAATTCT 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS TCA 90 bp | TCAGGTGTGGGGGAGATGTGGCTTCCAGGAATAAGAGGCAGCAGTTaGTTCTGCTGGCGCCTTCGGCTTCTCCCCTCACTGCGGGCTTTT | + |
|
Preference number: 5 (lower is better) Translates to: SGVGEMWLPGIRGSS*FCWRLRLLPSLRAF Trigger: AAAAGCCCGCAGTGAGGGGAGAAGCCGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTATTCCTGGAAGCCACATCTCCCCCACACCTGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | AACCAGGATAGCCTTAGAGTGGGTGGGCAGCCAGGGATCCAGGGGCGTTACTGTAATAAGAGGCAGCAGTaGATTCTGCTGGCGCCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: NQDSLRVGGQPGIQGRYCNKRQQ*ILLAPS Trigger: CGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTATT...ACAGTAACGCCCCTGGATCCCTGGCTGCCCACCCACTCTAAGGCTATCCTGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS CCA 90 bp | GTCTCCATGTCCTCTGGTTCAGGTATGCTGATGCCGCGGAAAAACTaGTTACTCCTAAAGATAGACTGGTGTCTTGGAATCAGCTTCCCC | + |
|
Preference number: 5 (lower is better) Translates to: VSMSSGSGMLMPRKN*LLLKIDWCLGISFP Trigger: GGGGAAGCTGATTCCAAGACACCAGTCTATCTTTAGGAGTAACCAGTTTTTCCGCGGCATCAGCATACCTGAACCAGAGGACATGGAGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | AGATGGAGCTGGCGTGGAAAAAGCACAGGGGAGGAGCCCGTGGTGATTAGAGGTCCACAGGCTGAACATTaGAGAATTTTTCTTCAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: RWSWRGKSTGEEPVVIRGPQAEH*RIFLQE Trigger: CTCTTGAAGAAAAATTCTCAAATGTTCAGCCTGTGG...ACCTCTAATCACCACGGGCTCCTCCCCTGTGCTTTTTCCACGCCAGCTCCATCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | CACAGTACCGATTGCCTGAGGAAGCCCGGCTCTGGTGAAACTGGAAGCATCTCTGATTCCACGAATTTTTaGATCGCTACTACTTGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: HSTDCLRKPGSGETGSISDSTNF*IATTCP Trigger: TGGACAAGTAGTAGCGATCAAAAAATTCGTGGAATC...AGAGATGCTTCCAGTTTCACCAGAGCCGGGCTTCCTCAGGCAATCGGTACTGTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS CCA 90 bp | CATCTTTCTCTTTCTTCTGAACACCTCGATGAGGTTCACGAGGTTTaGGTGTTTCAACTGCTTCAGCATACGGATTTCCCGCAGGGCTAT | + |
|
Preference number: 5 (lower is better) Translates to: HLSLSSEHLDEVHEV*VFQLLQHTDFPQGY Trigger: ATAGCCCTGCGGGAAATCCGTATGCTGAAGCAGTTGAAACACCCAAACCTCGTGAACCTCATCGAGGTGTTCAGAAGAAAGAGAAAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | TGGCCTTGGACTGCATATGTAGTCAAGGACAGTGACTTTGAATTTCTACTTTCAAATAAGAGGCAGCAGTaGATTCTGCTGGCGCCTTCG | + |
|
Preference number: 5 (lower is better) Translates to: WPWTAYVVKDSDFEFLLSNKRQQ*ILLAPS Trigger: CGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTATT...TGAAAGTAGAAATTCAAAGTCACTGTCCTTGACTACATATGCAGTCCAAGGCCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | GGTGGTCGATTCCTTGTAGTCTGTCCACTAACTGGTCACGTTTGGAATTTTCTCGATTCCACGAATTTTTaGATCGCTACTACTTGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: GGRFLVVCPLTGHVWNFLDSTNF*IATTCP Trigger: TGGACAAGTAGTAGCGATCAAAAAATTCGTGGAATC...GAGAAAATTCCAAACGTGACCAGTTAGTGGACAGACTACAAGGAATCGACCACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS TCA 90 bp | CACAGGTCAGCCTCTCATCAGGATTCATCTTCAGGCATCCCTTCATaGAACTTAAAGCCACAGGCTGAACATTTGAGAATTTTTCTTCAA | + |
|
Preference number: 5 (lower is better) Translates to: HRSASHQDSSSGIPS*NLKPQAEHLRIFLQ Trigger: TTGAAGAAAAATTCTCAAATGTTCAGCCTGTGGCTTTAAGTTTCATGAAGGGATGCCTGAAGATGAATCCTGATGAGAGGCTGACCTGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | TCACACACGAGGTTTCTCTCGCCCCTCTGCCTCTTTCTCATATGTACAAATAGATTTCATTTGATCCTCTaGAAAAGACTCAAAGTAGGC | + |
|
Preference number: 5 (lower is better) Translates to: SHTRFLSPLCLFLICTNRFHLIL*KRLKVG Trigger: GCCTACTTTGAGTCTTTTCAAGAGGATCAAATGAAA...TCTATTTGTACATATGAGAAAGAGGCAGAGGGGCGAGAGAAACCTCGTGTGTGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | GGTGGTCGATTCCTTGTAGTCTGTCCACTAACTGGTCACGTTTGGAATTTTCTCTTTCATTTGATCCTCTaGAAAAGACTCAAAGTAGGC | + |
|
Preference number: 5 (lower is better) Translates to: GGRFLVVCPLTGHVWNFLFHLIL*KRLKVG Trigger: GCCTACTTTGAGTCTTTTCAAGAGGATCAAATGAAA...GAGAAAATTCCAAACGTGACCAGTTAGTGGACAGACTACAAGGAATCGACCACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS TCA 90 bp | TCAGAAACTCCGTTTGGGTTTCTCTCCAGCTCGTTTAACAGTGTGTaGTCACAGTACTCAAAAACTAGATGCATCTTTCTCTTTCTTCTG | + |
|
Preference number: 5 (lower is better) Translates to: SETPFGFLSSSFNSV*SQYSKTRCIFLFLL Trigger: CAGAAGAAAGAGAAAGATGCATCTAGTTTTTGAGTACTGTGATCACACACTGTTAAACGAGCTGGAGAGAAACCCAAACGGAGTTTCTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | TGGCCTTGGACTGCATATGTAGTCAAGGACAGTGACTTTGAATTTCTACTTTCATTTCATTTGATCCTCTaGAAAAGACTCAAAGTAGGC | + |
|
Preference number: 5 (lower is better) Translates to: WPWTAYVVKDSDFEFLLSFHLIL*KRLKVG Trigger: GCCTACTTTGAGTCTTTTCAAGAGGATCAAATGAAA...TGAAAGTAGAAATTCAAAGTCACTGTCCTTGACTACATATGCAGTCCAAGGCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | ACAAGGTTTAACGCAGCTAAAACAGGTAGAATTCTAAGATGCAAAGTGATACATGATTCCACGAATTTTTaGATCGCTACTACTTGTCCA | + |
|
Preference number: 5 (lower is better) Translates to: TRFNAAKTGRILRCKVIHDSTNF*IATTCP Trigger: TGGACAAGTAGTAGCGATCAAAAAATTCGTGGAATC...ATGTATCACTTTGCATCTTAGAATTCTACCTGTTTTAGCTGCGTTAAACCTTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS-3UTR CAA 90 bp | TATGTAGAACTTATTCATAGTTTATACAATCAGCAGCAGGGACTTGGGTTTAAGCCACAGGCTGAACATTaGAGAATTTTTCTTCAAGAG | + |
|
Preference number: 5 (lower is better) Translates to: YVELIHSLYNQQQGLGFKPQAEH*RIFLQE Trigger: CTCTTGAAGAAAAATTCTCAAATGTTCAGCCTGTGG...CTTAAACCCAAGTCCCTGCTGCTGATTGTATAAACTATGAATAAGTTCTACATA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000086545.5 ENSMUST00000234602.2 |
||
| CDS CAA 90 bp | ATCAGGTGTGGGGGAGATGTGGCTTCCAGGAATAAGAGGCAGCAGTaGATTCTGCTGGCGCCTTCGGCTTCTCCCCTCACTGCGGGCTTT | + |
|
Preference number: 6 (lower is better) Translates to: IRCGGDVASRNKRQQ*ILLAPSASPLTAGF Trigger: AAAGCCCGCAGTGAGGGGAGAAGCCGAAGGCGCCAGCAGAATCAACTGCTGCCTCTTATTCCTGGAAGCCACATCTCCCCCACACCTGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS CCA 72 bp | CTTTCTTCTGAACACCTCGATGAGGTTCACGAGGTTTaGGTGTTTCAACTGCTTCAGCATACGGATTTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: LSSEHLDEVHEV*VFQLLQHTDFP Trigger: CGGGAAATCCGTATGCTGAAGCAGTTGAAACACCCAAACCTCGTGAACCTCATCGAGGTGTTCAGAAGAAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS CCA 72 bp | TCCTCTGGTTCAGGTATGCTGATGCCGCGGAAAAACTaGTTACTCCTAAAGATAGACTGGTGTCTTGGAATC | + |
|
Preference number: 6 (lower is better) Translates to: SSGSGMLMPRKN*LLLKIDWCLGI Trigger: GATTCCAAGACACCAGTCTATCTTTAGGAGTAACCAGTTTTTCCGCGGCATCAGCATACCTGAACCAGAGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS TCA 72 bp | CCGTTTGGGTTTCTCTCCAGCTCGTTTAACAGTGTGTaGTCACAGTACTCAAAAACTAGATGCATCTTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: PFGFLSSSFNSV*SQYSKTRCIFL Trigger: GAGAAAGATGCATCTAGTTTTTGAGTACTGTGATCACACACTGTTAAACGAGCTGGAGAGAAACCCAAACGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS TCA 72 bp | TTCAGGCATCCCTTCATGAAACTTAAAGCCACAGGCTaGACATTTGAGAATTTTTCTTCAAGAGTCTCCATG | + |
|
Preference number: 6 (lower is better) Translates to: FRHPFMKLKATG*TFENFSSRVSM Trigger: CATGGAGACTCTTGAAGAAAAATTCTCAAATGTTCAGCCTGTGGCTTTAAGTTTCATGAAGGGATGCCTGAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS CAA 72 bp | CTAACGACACGATCATCTTCAGATTCCACGAATTTTTaGATCGCTACTACTTGTCCAGAAGATTTGTTTCTG | + |
|
Preference number: 6 (lower is better) Translates to: LTTRSSSDSTNF*IATTCPEDLFL Trigger: CAGAAACAAATCTTCTGGACAAGTAGTAGCGATCAAAAAATTCGTGGAATCTGAAGATGATCGTGTCGTTAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||
| CDS CAA 90 bp | GCTATTTTCCTAACGACACGATCATCTTCAGATTCCACGAATTTTTaGATCGCTACTACTTGTCCAGAAGATTTGTTTCTGCACTTGAAT | + |
|
Preference number: 6 (lower is better) Translates to: AIFLTTRSSSDSTNF*IATTCPEDLFLHLN Trigger: ATTCAAGTGCAGAAACAAATCTTCTGGACAAGTAGTAGCGATCAAAAAATTCGTGGAATCTGAAGATGATCGTGTCGTTAGGAAAATAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000086545.5 ENSMUST00000234349.2 ENSMUST00000234602.2 |
||