Pregenerated sensors for CDKL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020990Ensembl transcript IDs: ENSMUST00000021377.5
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TTGCCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCGTTTGTGTTGTCTCCTaGTGTGGGTTCAAGACAGGA | + |
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Preference number: 2 (lower is better) Translates to: LPSSPDTPSRHGAWNLEFVCVVS*CGFKTG Trigger: TCCTGTCTTGAACCCACATCAGGAGACAACACAAAC...GAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGGCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| 3UTR-3UTR TCA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTTCGTGTCCTGGCAAATaGCCCCAGCTTCCTGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: HFLIHFLHVAESNLNRRFSCPGK*PQLPVC Trigger: ACAAACAGGAAGCTGGGGTCATTTGCCAGGACACGA...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| 3UTR CCA 72 bp | CCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTaGAATCTGGAATTCCCCTTCGTGTCCTGGCAAATG | + |
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Preference number: 3 (lower is better) Translates to: PSSPDTPSRHGA*NLEFPFVSWQM Trigger: CATTTGCCAGGACACGAAGGGGAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| 3UTR-3UTR CAA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGAACCCCAGCTTCCTGTTaGTGTTGTCTCCTGATGTGG | + |
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Preference number: 3 (lower is better) Translates to: HLNKCIWAFLDPLSARGRTPASC*CCLLMW Trigger: CCACATCAGGAGACAACACAAACAGGAAGCTGGGGT...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR TCA 90 bp | CTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCCCTTACTCGAACACCAGGTaGAGCCTCCGCTTCCTCCGG | + |
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Preference number: 4 (lower is better) Translates to: LLLPTPPAGMERGIWNSPYSNTR*SLRFLR Trigger: CCGGAGGAAGCGGAGGCTTCACCTGGTGTTCGAGTA...AGGGGAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | CTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCCCTAGCGGTACCACCGGGTaGCCACGTAGTCCGTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LLLPTPPAGMERGIWNSPSGTTG*PRSPCS Trigger: ACTACACGGACTACGTGGCCACCCGGTGGTACCGCT...AGGGGAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | TTGCCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCGTGTAGTAGTCACCTaGTCCAGTGAGAAGCCGTGC | + |
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Preference number: 4 (lower is better) Translates to: LPSSPDTPSRHGAWNLEFRVVVT*SSEKPC Trigger: GCACGGCTTCTCACTGGACCAGGTGACTACTACACG...GAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGGCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR TCA 90 bp | TTGCCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCCCTGTTTCTGCACTTaGACACTACCCCATAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: LPSSPDTPSRHGAWNLEFPCFCT*TLPHRS Trigger: GCTCCTATGGGGTAGTGTTCAAGTGCAGAAACAGGG...GAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGGCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | TTGCCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCTAAATACTTGCTGGTaGCTGGGAATGAGGTCCCCC | + |
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Preference number: 4 (lower is better) Translates to: LPSSPDTPSRHGAWNLEFLNTCW*LGMRSP Trigger: GGGGGACCTCATTCCCAGGCACCAGCAAGTATTTAG...GAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGGCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | CTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCCCTTCAGCAGGATCCATGTaGAGGCAGCCCTTTAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: LLLPTPPAGMERGIWNSPSAGSM*RQPFKK Trigger: CTTCTTAAAGGGCTGCCTCCACATGGATCCTGCTGA...AGGGGAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | CTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCCCTACAGCCTGCAGTGTCTaGCAAGTTATGTTCTTCACG | + |
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Preference number: 4 (lower is better) Translates to: LLLPTPPAGMERGIWNSPTACSV*QVMFFT Trigger: CGTGAAGAACATAACTTGGCAGACACTGCAGGCTGT...AGGGGAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | TTGCCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCTTATTGTCCAAAGCTaGAAGGATGCGGCTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: LPSSPDTPSRHGAWNLEFLIVQS*KDAAAG Trigger: ACCAGCAGCCGCATCCTTCCAGCTTTGGACAATAAG...GAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGGCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | CTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCCCTCATGTCTTCAGGGTCTaGAATTTTCACCCCACTGAA | + |
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Preference number: 4 (lower is better) Translates to: LLLPTPPAGMERGIWNSPHVFRV*NFHPTE Trigger: TTCAGTGGGGTGAAAATTCCAGACCCTGAAGACATG...AGGGGAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR TCA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTTTGATGGCCACGATCTaGCCCGTGTCCCTGTTTCTG | + |
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Preference number: 4 (lower is better) Translates to: HFLIHFLHVAESNLNRRFLMATI*PVSLFL Trigger: CAGAAACAGGGACACGGGTCAGATCGTGGCCATCAA...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTCTGGAAGGATGCGGCTaGTGGTTAGCTGAGGTAGGT | + |
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Preference number: 4 (lower is better) Translates to: HFLIHFLHVAESNLNRRFLEGCG*WLAEVG Trigger: ACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAG...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| 3UTR CAA 72 bp | CCCTTCGTGTCCTGGCAAATGACCCCAGCTTCCTGTTaGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: PFVSWQMTPASC*CCLLMWVQDRN Trigger: ATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCTGGGGTCATTTGCCAGGACACGAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTTCCAGTGAGAAGCCGTaGGAACCCAAAGTCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: HFLIHFLHVAESNLNRRFSSEKP*EPKVTE Trigger: CTCTGTGACTTTGGGTTCGCACGGCTTCTCACTGGA...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| 3UTR CAA 72 bp | CGTGTCCTGGCAAATGACCCCAGCTTCCTGTTTGTGTaGTCTCCTGATGTGGGTTCAAGACAGGAATCAAAT | + |
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Preference number: 4 (lower is better) Translates to: RVLANDPSFLFV*SPDVGSRQESN Trigger: ATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCTGGGGTCATTTGCCAGGACACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR TCA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGACGGCTGCTGGTTAGCTaGGGTAGGTACTGCAGCCCA | + |
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Preference number: 4 (lower is better) Translates to: HLNKCIWAFLDPLSARGRRLLVS*GRYCSP Trigger: TGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCG...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR TCA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTGGGCGATTTTCTTTATaGCAGGGTCATCTTCGGTTT | + |
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Preference number: 4 (lower is better) Translates to: HFLIHFLHVAESNLNRRFGRFSL*QGHLRF Trigger: AAACCGAAGATGACCCTGTCATAAAGAAAATCGCCC...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGAAACACACAGCCAATTaGCCAGACATCTACAGGGGG | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVKHTAN*PDIYRG Trigger: CCCCCTGTAGATGTCTGGGCAATTGGCTGTGTGTTT...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR TCA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTACAGAGCTTAATGGCTaGCTGTTTGGTGATGAGAAT | + |
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Preference number: 4 (lower is better) Translates to: HFLIHFLHVAESNLNRRFTELNG*LFGDEN Trigger: ATTCTCATCACCAAACAGTCAGCCATTAAGCTCTGT...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGACCAAAGCTGGAAGGATaGGGCTGCTGGTTAGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: HLNKCIWAFLDPLSARGRPKLEG*GCWLAE Trigger: CTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGG...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGCAGAGTCTTCCTCGCTaGTTTGTCATGTTGTCTCGT | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVQSLPR*FVMLSR Trigger: ACGAGACAACATGACAAACCAGCGAGGAAGACTCTG...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGTCAAAATATGGATGCTaGAACAGCTGTTCGCATGTC | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVSKYGC*NSCSHV Trigger: GACATGCGAACAGCTGTTGCAGCATCCATATTTTGA...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGATGCAGCCCAGTCAAGTaGTTTCTACTCTGCCTCAGA | + |
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Preference number: 4 (lower is better) Translates to: HLNKCIWAFLDPLSARGRCSPVK*FLLCLR Trigger: TCTGAGGCAGAGTAGAAAGCACTTGACTGGGCTGCA...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR TCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGACCCCACTGAAGTATTaGTTCATGCTAAATACTTGC | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVTPLKY*FMLNTC Trigger: GCAAGTATTTAGCATGAATCAATACTTCAGTGGGGT...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGTCACGTCTCTGTGTATaGAGTTATGTTTATGGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVSRLCV*SYVYGR Trigger: TCTGCCATAAACATAACTGCATACACAGAGACGTGA...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGAATGCTGTCAAAATATaGATGCTGCAACAGCTGTTC | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVNAVKI*MLQQLF Trigger: GAACAGCTGTTGCAGCATCCATATTTTGACAGCATT...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGCTCTTGGTACTACAGTaGTACTTCTTATTGTCCAAA | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVLLVLQ*YFLLSK Trigger: TTTGGACAATAAGAAGTACCACTGTAGTACCAAGAG...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGACAGAAATTTACAGCCTaGAGTGTCTGCCAAGTTATG | + |
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Preference number: 4 (lower is better) Translates to: HLNKCIWAFLDPLSARGRQKFTA*SVCQVM Trigger: CATAACTTGGCAGACACTGCAGGCTGTAAATTTCTG...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR GCA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGACTGTCAAAATATGGATaGTGCAACAGCTGTTCGCAT | + |
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Preference number: 4 (lower is better) Translates to: HLNKCIWAFLDPLSARGRLSKYG*CNSCSH Trigger: ATGCGAACAGCTGTTGCAGCATCCATATTTTGACAG...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGAGAGTAGGAGATGTTTaGAAATTTCAACTCAAGTGT | + |
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Preference number: 4 (lower is better) Translates to: SFLFVLSPDVGSRQESNVRVGDV*KFQLKC Trigger: ACACTTGAGTTGAAATTTCCAAACATCTCCTACTCT...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CCA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGAATGCAGTTATGTTTATaGCAGAAATTTACAGCCTGC | + |
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Preference number: 4 (lower is better) Translates to: HLNKCIWAFLDPLSARGRMQLCL*QKFTAC Trigger: GCAGGCTGTAAATTTCTGCCATAAACATAACTGCAT...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 90 bp | GCAAACACACAGCCAATTGCCCAGACATCTACAGGGGGACCATACTaGGTGTCTCCCACTAGCAGCTCGGGTGAGCGGTACCACCGGGTG | + |
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Preference number: 5 (lower is better) Translates to: ANTQPIAQTSTGGPY*VSPTSSSGERYHRV Trigger: CACCCGGTGGTACCGCTCACCCGAGCTGCTAGTGGGAGACACGCAGTATGGTCCCCCTGTAGATGTCTGGGCAATTGGCTGTGTGTTTGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 90 bp | CTCCGCTTCCTCCGGAAGACTTCCAGGAGGTTGACCAGGTTGGGGTaGTTGAGTTGCTTGAGCATGCGGATTTCTCGAAGGGCGATTTTC | + |
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Preference number: 5 (lower is better) Translates to: LRFLRKTSRRLTRLG*LSCLSMRISRRAIF Trigger: GAAAATCGCCCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGAAGTCTTCCGGAGGAAGCGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | TTGCCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCGGGTGCTTGAGTTGCTaGAGCATGCGGATTTCTCGA | + |
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Preference number: 5 (lower is better) Translates to: LPSSPDTPSRHGAWNLEFGCLSC*SMRISR Trigger: TCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCC...GAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGGCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTACCAGGTTGGGGTGCTaGAGTTGCTTGAGCATGCGG | + |
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Preference number: 5 (lower is better) Translates to: HFLIHFLHVAESNLNRRFTRLGC*SCLSMR Trigger: CCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGT...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | TTGCCTTCTTCTCCCGACACCCCCAGCAGGCATGGAGCGTGGAATCTGGAATTCCAGTGGTACTTCTTATaGTCCAAAGCTGGAAGGATG | + |
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Preference number: 5 (lower is better) Translates to: LPSSPDTPSRHGAWNLEFQWYFL*SKAGRM Trigger: CATCCTTCCAGCTTTGGACAATAAGAAGTACCACTG...GAATTCCAGATTCCACGCTCCATGCCTGCTGGGGGTGTCGGGAGAAGAAGGCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS TCA 90 bp | TACTTCTTATTGTCCAAAGCTGGAAGGATGCGGCTGCTGGTTAGCTaGGGTAGGTACTGCAGCCCAGTCAAGTGCTTTCTACTCTGCCTC | + |
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Preference number: 5 (lower is better) Translates to: YFLLSKAGRMRLLVS*GRYCSPVKCFLLCL Trigger: GAGGCAGAGTAGAAAGCACTTGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGGACAATAAGAAGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 90 bp | CTCGTCAACTCCCCAACTTCTCGAATGCTGTCAAAATATGGATGCTaGAACAGCTGTTCGCATGTCAGCCTCTCAGCAGGATCCATGTGG | + |
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Preference number: 5 (lower is better) Translates to: LVNSPTSRMLSKYGC*NSCSHVSLSAGSMW Trigger: CCACATGGATCCTGCTGAGAGGCTGACATGCGAACAGCTGTTGCAGCATCCATATTTTGACAGCATTCGAGAAGTTGGGGAGTTGACGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CCA 90 bp | CAGCCCAGTCAAGTGCTTTCTACTCTGCCTCAGAGTCTTCCTCGCTaGTTTGTCATGTTGTCTCGTCAACTCCCCAACTTCTCGAATGCT | + |
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Preference number: 5 (lower is better) Translates to: QPSQVLSTLPQSLPR*FVMLSRQLPNFSNA Trigger: AGCATTCGAGAAGTTGGGGAGTTGACGAGACAACATGACAAACCAGCGAGGAAGACTCTGAGGCAGAGTAGAAAGCACTTGACTGGGCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 90 bp | TGTCTCGTCAACTCCCCAACTTCTCGAATGCTGTCAAAATATGGATaGTGCAACAGCTGTTCGCATGTCAGCCTCTCAGCAGGATCCATG | + |
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Preference number: 5 (lower is better) Translates to: CLVNSPTSRMLSKYG*CNSCSHVSLSAGSM Trigger: CATGGATCCTGCTGAGAGGCTGACATGCGAACAGCTGTTGCAGCATCCATATTTTGACAGCATTCGAGAAGTTGGGGAGTTGACGAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 90 bp | TACTACAGTGGTACTTCTTATTGTCCAAAGCTGGAAGGATGCGGCTaGTGGTTAGCTGAGGTAGGTACTGCAGCCCAGTCAAGTGCTTTC | + |
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Preference number: 5 (lower is better) Translates to: YYSGTSYCPKLEGCG*WLAEVGTAAQSSAF Trigger: GAAAGCACTTGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGGACAATAAGAAGTACCACTGTAGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 90 bp | TCTTGGTACTACAGTGGTACTTCTTATTGTCCAAAGCTGGAAGGATaGGGCTGCTGGTTAGCTGAGGTAGGTACTGCAGCCCAGTCAAGT | + |
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Preference number: 5 (lower is better) Translates to: SWYYSGTSYCPKLEG*GCWLAEVGTAAQSS Trigger: ACTTGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGGACAATAAGAAGTACCACTGTAGTACCAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CCA 90 bp | TACAGTGGTACTTCTTATTGTCCAAAGCTGGAAGGATGCGGCTGCTaGTTAGCTGAGGTAGGTACTGCAGCCCAGTCAAGTGCTTTCTAC | + |
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Preference number: 5 (lower is better) Translates to: YSGTSYCPKLEGCGC*LAEVGTAAQSSAFY Trigger: GTAGAAAGCACTTGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGGACAATAAGAAGTACCACTGTA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 90 bp | TCGCTGGTTTGTCATGTTGTCTCGTCAACTCCCCAACTTCTCGAATaGTGTCAAAATATGGATGCTGCAACAGCTGTTCGCATGTCAGCC | + |
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Preference number: 5 (lower is better) Translates to: SLVCHVVSSTPQLLE*CQNMDAATAVRMSA Trigger: GGCTGACATGCGAACAGCTGTTGCAGCATCCATATTTTGACAGCATTCGAGAAGTTGGGGAGTTGACGAGACAACATGACAAACCAGCGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGAAGACTTCCAGGAGGTaGACCAGGTTGGGGTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: SFLFVLSPDVGSRQESNVKTSRR*TRLGCL Trigger: CAAGCACCCCAACCTGGTCAACCTCCTGGAAGTCTT...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGCAAACACACAGCCAATaGCCCAGACATCTACAGGGG | + |
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Preference number: 5 (lower is better) Translates to: SFLFVLSPDVGSRQESNVQTHSQ*PRHLQG Trigger: CCCCTGTAGATGTCTGGGCAATTGGCTGTGTGTTTG...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGAAGGAGGTTGACCAGGTaGGGGTGCTTGAGTTGCTTG | + |
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Preference number: 5 (lower is better) Translates to: HLNKCIWAFLDPLSARGRRRLTR*GCLSCL Trigger: CAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCT...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | AGCTTCCTGTTTGTGTTGTCTCCTGATGTGGGTTCAAGACAGGAATCAAATGTGATTCATGCTAAATACTaGCTGGTGCCTGGGAATGAG | + |
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Preference number: 5 (lower is better) Translates to: SFLFVLSPDVGSRQESNVIHAKY*LVPGNE Trigger: CTCATTCCCAGGCACCAGCAAGTATTTAGCATGAAT...CACATTTGATTCCTGTCTTGAACCCACATCAGGAGACAACACAAACAGGAAGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | CATTTCTTGATCCACTTTCTGCACGTGGCAGAGAGCAACCTGAATCGCAGGTTTCACCCCACTGAAGTATaGATTCATGCTAAATACTTG | + |
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Preference number: 5 (lower is better) Translates to: HFLIHFLHVAESNLNRRFHPTEV*IHAKYL Trigger: CAAGTATTTAGCATGAATCAATACTTCAGTGGGGTG...AAACCTGCGATTCAGGTTGCTCTCTGCCACGTGCAGAAAGTGGATCAAGAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGAGTCTTCCTCGCTGGTTaGTCATGTTGTCTCGTCAAC | + |
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Preference number: 5 (lower is better) Translates to: HLNKCIWAFLDPLSARGRVFLAG*SCCLVN Trigger: GTTGACGAGACAACATGACAAACCAGCGAGGAAGAC...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS-3UTR CAA 90 bp | CATCTAAATAAATGTATATGGGCATTTCTTGATCCACTTTCTGCACGTGGCAGACAGAGTAGGAGATGTTaGGAAATTTCAACTCAAGTG | + |
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Preference number: 5 (lower is better) Translates to: HLNKCIWAFLDPLSARGRQSRRC*EISTQV Trigger: CACTTGAGTTGAAATTTCCAAACATCTCCTACTCTG...TCTGCCACGTGCAGAAAGTGGATCAAGAAATGCCCATATACATTTATTTAGATG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CCA 90 bp | GATGTTTGGAAATTTCAACTCAAGTGTTTCCATGTCTTCAGGGTCTaGAATTTTCACCCCACTGAAGTATTGATTCATGCTAAATACTTG | + |
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Preference number: 5 (lower is better) Translates to: DVWKFQLKCFHVFRV*NFHPTEVLIHAKYL Trigger: CAAGTATTTAGCATGAATCAATACTTCAGTGGGGTGAAAATTCCAGACCCTGAAGACATGGAAACACTTGAGTTGAAATTTCCAAACATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CCA 72 bp | CCACCGGGTGGCCACGTAGTCCGTGTAGTAGTCACCTaGTCCAGTGAGAAGCCGTGCGAACCCAAAGTCACA | + |
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Preference number: 6 (lower is better) Translates to: PPGGHVVRVVVT*SSEKPCEPKVT Trigger: TGTGACTTTGGGTTCGCACGGCTTCTCACTGGACCAGGTGACTACTACACGGACTACGTGGCCACCCGGTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 72 bp | CGGAAGACTTCCAGGAGGTTGACCAGGTTGGGGTGCTaGAGTTGCTTGAGCATGCGGATTTCTCGAAGGGCG | + |
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Preference number: 6 (lower is better) Translates to: RKTSRRLTRLGC*SCLSMRISRRA Trigger: CGCCCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGAAGTCTTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | CTCCGGAAGACTTCCAGGAGGTTGACCAGGTTGGGGTaGTTGAGTTGCTTGAGCATGCGGATTTCTCGAAGG | + |
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Preference number: 6 (lower is better) Translates to: LRKTSRRLTRLG*LSCLSMRISRR Trigger: CCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGAAGTCTTCCGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 90 bp | CGCTTCCTCCGGAAGACTTCCAGGAGGTTGACCAGGTTGGGGTGCTaGAGTTGCTTGAGCATGCGGATTTCTCGAAGGGCGATTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: RFLRKTSRRLTRLGC*SCLSMRISRRAIFF Trigger: AAAGAAAATCGCCCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGAAGTCTTCCGGAGGAAGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS TCA 72 bp | TGGCCACGATCTGACCCGTGTCCCTGTTTCTGCACTTaGACACTACCCCATAGGAGCCTTCTCCAATCTTTC | + |
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Preference number: 6 (lower is better) Translates to: WPRSDPCPCFCT*TLPHRSLLQSF Trigger: GAAAGATTGGAGAAGGCTCCTATGGGGTAGTGTTCAAGTGCAGAAACAGGGACACGGGTCAGATCGTGGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS TCA 72 bp | TTGTCCAAAGCTGGAAGGATGCGGCTGCTGGTTAGCTaGGGTAGGTACTGCAGCCCAGTCAAGTGCTTTCTA | + |
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Preference number: 6 (lower is better) Translates to: LSKAGRMRLLVS*GRYCSPVKCFL Trigger: TAGAAAGCACTTGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGGACAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | ACTTCCAGGAGGTTGACCAGGTTGGGGTGCTTGAGTTaGTTGAGCATGCGGATTTCTCGAAGGGCGATTTTC | + |
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Preference number: 6 (lower is better) Translates to: TSRRLTRLGCLS*LSMRISRRAIF Trigger: GAAAATCGCCCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGAAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | GGTACTTCTTATTGTCCAAAGCTGGAAGGATGCGGCTaGTGGTTAGCTGAGGTAGGTACTGCAGCCCAGTCA | + |
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Preference number: 6 (lower is better) Translates to: GTSYCPKLEGCG*WLAEVGTAAQS Trigger: TGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGGACAATAAGAAGTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 72 bp | GACTTCCAGGAGGTTGACCAGGTTGGGGTGCTTGAGTaGCTTGAGCATGCGGATTTCTCGAAGGGCGATTTT | + |
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Preference number: 6 (lower is better) Translates to: DFQEVDQVGVLE*LEHADFSKGDF Trigger: AAAATCGCCCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGAAGTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS TCA 72 bp | TCTTCGGTTTCCAGAAACCTCTTGATGGCCACGATCTaGCCCGTGTCCCTGTTTCTGCACTTGAACACTACC | + |
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Preference number: 6 (lower is better) Translates to: SSVSRNLLMATI*PVSLFLHLNTT Trigger: GGTAGTGTTCAAGTGCAGAAACAGGGACACGGGTCAGATCGTGGCCATCAAGAGGTTTCTGGAAACCGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | GGTAGGTACTGCAGCCCAGTCAAGTGCTTTCTACTCTaGCTCAGAGTCTTCCTCGCTGGTTTGTCATGTTGT | + |
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Preference number: 6 (lower is better) Translates to: GRYCSPVKCFLL*LRVFLAGLSCC Trigger: ACAACATGACAAACCAGCGAGGAAGACTCTGAGGCAGAGTAGAAAGCACTTGACTGGGCTGCAGTACCTACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CCA 72 bp | ACTTCTTATTGTCCAAAGCTGGAAGGATGCGGCTGCTaGTTAGCTGAGGTAGGTACTGCAGCCCAGTCAAGT | + |
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Preference number: 6 (lower is better) Translates to: TSYCPKLEGCGC*LAEVGTAAQSS Trigger: ACTTGACTGGGCTGCAGTACCTACCTCAGCTAACCAGCAGCCGCATCCTTCCAGCTTTGGACAATAAGAAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 72 bp | TCCAGGAGGTTGACCAGGTTGGGGTGCTTGAGTTGCTaGAGCATGCGGATTTCTCGAAGGGCGATTTTCTTT | + |
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Preference number: 6 (lower is better) Translates to: SRRLTRLGCLSC*SMRISRRAIFF Trigger: AAAGAAAATCGCCCTTCGAGAAATCCGCATGCTCAAGCAACTCAAGCACCCCAACCTGGTCAACCTCCTGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 72 bp | ACTCTGCCTCAGAGTCTTCCTCGCTGGTTTGTCATGTaGTCTCGTCAACTCCCCAACTTCTCGAATGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: TLPQSLPRWFVM*SRQLPNFSNAV Trigger: GACAGCATTCGAGAAGTTGGGGAGTTGACGAGACAACATGACAAACCAGCGAGGAAGACTCTGAGGCAGAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | TCCCCAACTTCTCGAATGCTGTCAAAATATGGATGCTaGAACAGCTGTTCGCATGTCAGCCTCTCAGCAGGA | + |
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Preference number: 6 (lower is better) Translates to: SPTSRMLSKYGC*NSCSHVSLSAG Trigger: TCCTGCTGAGAGGCTGACATGCGAACAGCTGTTGCAGCATCCATATTTTGACAGCATTCGAGAAGTTGGGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CCA 72 bp | CAAGTGCTTTCTACTCTGCCTCAGAGTCTTCCTCGCTaGTTTGTCATGTTGTCTCGTCAACTCCCCAACTTC | + |
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Preference number: 6 (lower is better) Translates to: QVLSTLPQSLPR*FVMLSRQLPNF Trigger: GAAGTTGGGGAGTTGACGAGACAACATGACAAACCAGCGAGGAAGACTCTGAGGCAGAGTAGAAAGCACTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 72 bp | TGCTTTCTACTCTGCCTCAGAGTCTTCCTCGCTGGTTaGTCATGTTGTCTCGTCAACTCCCCAACTTCTCGA | + |
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Preference number: 6 (lower is better) Translates to: CFLLCLRVFLAG*SCCLVNSPTSR Trigger: TCGAGAAGTTGGGGAGTTGACGAGACAACATGACAAACCAGCGAGGAAGACTCTGAGGCAGAGTAGAAAGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | AACTCCCCAACTTCTCGAATGCTGTCAAAATATGGATaGTGCAACAGCTGTTCGCATGTCAGCCTCTCAGCA | + |
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Preference number: 6 (lower is better) Translates to: NSPTSRMLSKYG*CNSCSHVSLSA Trigger: TGCTGAGAGGCTGACATGCGAACAGCTGTTGCAGCATCCATATTTTGACAGCATTCGAGAAGTTGGGGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 90 bp | TGTGGAGGCAGCCCTTTAAGAAGCCCAGTGCAGAGTAGGAGATGTTaGGAAATTTCAACTCAAGTGTTTCCATGTCTTCAGGGTCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: CGGSPLRSPVQSRRC*EISTQVFPCLQGLE Trigger: TTCCAGACCCTGAAGACATGGAAACACTTGAGTTGAAATTTCCAAACATCTCCTACTCTGCACTGGGCTTCTTAAAGGGCTGCCTCCACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | TGTCATGTTGTCTCGTCAACTCCCCAACTTCTCGAATaGTGTCAAAATATGGATGCTGCAACAGCTGTTCGC | + |
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Preference number: 6 (lower is better) Translates to: CHVVSSTPQLLE*CQNMDAATAVR Trigger: GCGAACAGCTGTTGCAGCATCCATATTTTGACAGCATTCGAGAAGTTGGGGAGTTGACGAGACAACATGACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 72 bp | TTTCACCCCACTGAAGTATTGATTCATGCTAAATACTaGCTGGTGCCTGGGAATGAGGTCCCCCAGGGTTTT | + |
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Preference number: 6 (lower is better) Translates to: FHPTEVLIHAKY*LVPGNEVPQGF Trigger: AAAACCCTGGGGGACCTCATTCCCAGGCACCAGCAAGTATTTAGCATGAATCAATACTTCAGTGGGGTGAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | TTATGTTTATGGCAGAAATTTACAGCCTGCAGTGTCTaGCAAGTTATGTTCTTCACGAGAGGCTCTGGTACC | + |
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Preference number: 6 (lower is better) Translates to: LCLWQKFTACSV*QVMFFTRGSGT Trigger: GGTACCAGAGCCTCTCGTGAAGAACATAACTTGGCAGACACTGCAGGCTGTAAATTTCTGCCATAAACATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS GCA 72 bp | TGTATGCAGTTATGTTTATGGCAGAAATTTACAGCCTaGAGTGTCTGCCAAGTTATGTTCTTCACGAGAGGC | + |
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Preference number: 6 (lower is better) Translates to: CMQLCLWQKFTA*SVCQVMFFTRG Trigger: GCCTCTCGTGAAGAACATAACTTGGCAGACACTGCAGGCTGTAAATTTCTGCCATAAACATAACTGCATACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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| CDS CAA 72 bp | AGCCCTTTAAGAAGCCCAGTGCAGAGTAGGAGATGTTaGGAAATTTCAACTCAAGTGTTTCCATGTCTTCAG | + |
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Preference number: 6 (lower is better) Translates to: SPLRSPVQSRRC*EISTQVFPCLQ Trigger: CTGAAGACATGGAAACACTTGAGTTGAAATTTCCAAACATCTCCTACTCTGCACTGGGCTTCTTAAAGGGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021377.5 |
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