Pregenerated sensors for CDK7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000069089Ensembl transcript IDs: ENSMUST00000091299.8
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACAAATCTCCCCGAGGCCTCTTCCTTGGGGGAGGGTCAAAGGAATaGGATGAGCAGTGCCAAGGTCCTGGCTGTGCGTGCAGGAGGAGC | + |
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Preference number: 1 (lower is better) Translates to: HKSPRGLFLGGGSKE*DEQCQGPGCACRRS Trigger: GCTCCTCCTGCACGCACAGCCAGGACCTTGGCACTGCTCATCCCATTCCTTTGACCCTCCCCCAAGGAAGAGGCCTCGGGGAGATTTGTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR GCA 90 bp | CAGAGCTGCAGAATAACCAGGAATCGCATGCCAAGCCTCTCCCAATaGACTGTCAATTACATTTTAGAGACTGCAGTTATCCTTGTACTC | + |
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Preference number: 1 (lower is better) Translates to: QSCRITRNRMPSLSQ*TVNYILETAVILVL Trigger: GAGTACAAGGATAACTGCAGTCTCTAAAATGTAATTGACAGTGCATTGGGAGAGGCTTGGCATGCGATTCCTGGTTATTCTGCAGCTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR GCA 90 bp | TCAATACTATACCTAATGATCTTAAAGTGGCAGATCACCCAGAGCTaGAGAATAACCAGGAATCGCATGCCAAGCCTCTCCCAATGCACT | + |
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Preference number: 1 (lower is better) Translates to: SILYLMILKWQITQS*RITRNRMPSLSQCT Trigger: AGTGCATTGGGAGAGGCTTGGCATGCGATTCCTGGTTATTCTGCAGCTCTGGGTGATCTGCCACTTTAAGATCATTAGGTATAGTATTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR-3UTR CCA 90 bp | TTTTGTTTATTTATGCTTTTTGAGAGAGGACCTTACTGCGTAGCTCTGGCTGGCGCAGTGCCAAGGTCCTaGCTGTGCGTGCAGGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: FCLFMLFERGPYCVALAGAVPRS*LCVQEE Trigger: CTCCTCCTGCACGCACAGCCAGGACCTTGGCACTGC...GCCAGCCAGAGCTACGCAGTAAGGTCCTCTCTCAAAAAGCATAAATAAACAAAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR-3UTR GCA 90 bp | AACTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGCCAAGGTCCTGGCTGTaGGTGCAGGAGGAGCGTAGT | + |
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Preference number: 2 (lower is better) Translates to: NSLKIAVQNHGRQTQISPPRSWL*VQEERS Trigger: ACTACGCTCCTCCTGCACGCACAGCCAGGACCTTGG...CGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR-3UTR TCA 90 bp | GATCTTAAAGTGGCAGATCACCCAGAGCTGCAGAATAACCAGGAATCGCATGCCCATTTATTTCAGCAGTaGAACTGTCCATTGTTCGCT | + |
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Preference number: 2 (lower is better) Translates to: DLKVADHPELQNNQESHAHLFQQ*NCPLFA Trigger: AGCGAACAATGGACAGTTTCACTGCTGAAATAAATG...GGCATGCGATTCCTGGTTATTCTGCAGCTCTGGGTGATCTGCCACTTTAAGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR-3UTR CCA 90 bp | AACTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGGGAGGGTCAAAGGAATaGGATGAGCAGTGCCAAGGT | + |
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Preference number: 2 (lower is better) Translates to: NSLKIAVQNHGRQTQISPGGSKE*DEQCQG Trigger: ACCTTGGCACTGCTCATCCCATTCCTTTGACCCTCC...CGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR CAA 90 bp | GCTAGGATCAAAGGCATAGGCTGCCATAAGGTGAGATGGAACTCTTaGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCC | + |
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Preference number: 2 (lower is better) Translates to: ARIKGIGCHKVRWNS*KIAVQNHGRQTQIS Trigger: GGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTTCCATCTCACCTTATGGCAGCCTATGCCTTTGATCCTAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR-3UTR CCA 90 bp | CTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGAGCTAATGATCTTAAAGTaGCAGATCACCCAGAGCTGC | + |
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Preference number: 2 (lower is better) Translates to: LFEDSSTKPWKTNTNLPELMILK*QITQSC Trigger: GCAGCTCTGGGTGATCTGCCACTTTAAGATCATTAG...CTCGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR CCA 72 bp | CCCCGAGGCCTCTTCCTTGGGGGAGGGTCAAAGGAATaGGATGAGCAGTGCCAAGGTCCTGGCTGTGCGTGC | + |
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Preference number: 3 (lower is better) Translates to: PRGLFLGGGSKE*DEQCQGPGCAC Trigger: GCACGCACAGCCAGGACCTTGGCACTGCTCATCCCATTCCTTTGACCCTCCCCCAAGGAAGAGGCCTCGGGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR CCA 72 bp | AGGGAGGCGTCAGGGCCATCTTTTCAGGGCTTACTCTaGGTAGTAAGTAGGCTAAAGCTCTTGCAAAACTGC | + |
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Preference number: 3 (lower is better) Translates to: REASGPSFQGLL*VVSRLKLLQNC Trigger: GCAGTTTTGCAAGAGCTTTAGCCTACTTACTACCCAGAGTAAGCCCTGAAAAGATGGCCCTGACGCCTCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR GCA 72 bp | TACCTAATGATCTTAAAGTGGCAGATCACCCAGAGCTaGAGAATAACCAGGAATCGCATGCCAAGCCTCTCC | + |
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Preference number: 3 (lower is better) Translates to: YLMILKWQITQS*RITRNRMPSLS Trigger: GGAGAGGCTTGGCATGCGATTCCTGGTTATTCTGCAGCTCTGGGTGATCTGCCACTTTAAGATCATTAGGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR CCA 72 bp | GAGATGGAACTCTTTGAAGATAGCAGTACAAAACCATaGAAGACAAACACAAATCTCCCCGAGGCCTCTTCC | + |
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Preference number: 3 (lower is better) Translates to: EMELFEDSSTKP*KTNTNLPEASS Trigger: GGAAGAGGCCTCGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTTCCATCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR GCA 72 bp | AGAATAACCAGGAATCGCATGCCAAGCCTCTCCCAATaGACTGTCAATTACATTTTAGAGACTGCAGTTATC | + |
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Preference number: 3 (lower is better) Translates to: RITRNRMPSLSQ*TVNYILETAVI Trigger: GATAACTGCAGTCTCTAAAATGTAATTGACAGTGCATTGGGAGAGGCTTGGCATGCGATTCCTGGTTATTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR CCA 72 bp | TTTCTGTTTTCAATACTATACCTAATGATCTTAAAGTaGCAGATCACCCAGAGCTGCAGAATAACCAGGAAT | + |
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Preference number: 3 (lower is better) Translates to: FLFSILYLMILK*QITQSCRITRN Trigger: ATTCCTGGTTATTCTGCAGCTCTGGGTGATCTGCCACTTTAAGATCATTAGGTATAGTATTGAAAACAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| 3UTR GCA 72 bp | CCTCTCCCAATGCACTGTCAATTACATTTTAGAGACTaGAGTTATCCTTGTACTCTAATCATAAATCACAAA | + |
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Preference number: 3 (lower is better) Translates to: PLPMHCQLHFRD*SYPCTLIINHK Trigger: TTTGTGATTTATGATTAGAGTACAAGGATAACTGCAGTCTCTAAAATGTAATTGACAGTGCATTGGGAGAGG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR TCA 90 bp | GATCTTAAAGTGGCAGATCACCCAGAGCTGCAGAATAACCAGGAATCGCATGCCAGAACAGGCCTTGGATaGGCTCCAGCAGGTCGTCCC | + |
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Preference number: 4 (lower is better) Translates to: DLKVADHPELQNNQESHARTGLG*APAGRP Trigger: GGGACGACCTGCTGGAGCTCATCCAAGGCCTGTTCT...GGCATGCGATTCCTGGTTATTCTGCAGCTCTGGGTGATCTGCCACTTTAAGATC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR TCA 90 bp | AACTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGCGTCCCCAGCCGCGATaGAGATGTGCTGCAGTGGGA | + |
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Preference number: 4 (lower is better) Translates to: NSLKIAVQNHGRQTQISPRPQPR*RCAAVG Trigger: TCCCACTGCAGCACATCTTCATCGCGGCTGGGGACG...CGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR GCA 90 bp | TTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGAGGCCTCACATGTCAGGCCACTaGTCTTCAGTTGGTGTACCC | + |
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Preference number: 4 (lower is better) Translates to: LKIAVQNHGRQTQISPRPHMSGH*SSVGVP Trigger: GGGTACACCAACTGAAGAGCAGTGGCCTGACATGTG...AGGCCTCGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR CCA 90 bp | CTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGAGTGGCGACGATTTGGTTaGTGTTCTTGTCCCTGGCCT | + |
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Preference number: 4 (lower is better) Translates to: LFEDSSTKPWKTNTNLPEWRRFG*CSCPWP Trigger: AGGCCAGGGACAAGAACACCAACCAAATCGTCGCCA...CTCGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR CCA 90 bp | GAATCGCATGCCAAGCCTCTCCCAATGCACTGTCAATTACATTTTAGAGACTGCTTAATGGCGACGATTTaGTTGGTGTTCTTGTCCCTG | + |
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Preference number: 4 (lower is better) Translates to: ESHAKPLPMHCQLHFRDCLMATI*LVFLSL Trigger: CAGGGACAAGAACACCAACCAAATCGTCGCCATTAA...GCAGTCTCTAAAATGTAATTGACAGTGCATTGGGAGAGGCTTGGCATGCGATTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR CCA 90 bp | CCAAGCCTCTCCCAATGCACTGTCAATTACATTTTAGAGACTGCAGTTATCCTTGAGCCCGGTACCATCTaGTCACAACTTGATGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: PSLSQCTVNYILETAVILEPGTI*SQLDVC Trigger: ACACACATCAAGTTGTGACCAGATGGTACCGGGCTC...AAGGATAACTGCAGTCTCTAAAATGTAATTGACAGTGCATTGGGAGAGGCTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR CCA 90 bp | AACTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGAATAAGAACAGGCCTTaGATGAGCTCCAGCAGGTCG | + |
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Preference number: 4 (lower is better) Translates to: NSLKIAVQNHGRQTQISPNKNRP*MSSSRS Trigger: CGACCTGCTGGAGCTCATCCAAGGCCTGTTCTTATT...CGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR GCA 90 bp | AACTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGAGACTTATGTCCAAATaGATCAAGGAGACCAATTAT | + |
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Preference number: 4 (lower is better) Translates to: NSLKIAVQNHGRQTQISPRLMSK*IKETNY Trigger: ATAATTGGTCTCCTTGATGCATTTGGACATAAGTCT...CGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR CAA 90 bp | GATCTTAAAGTGGCAGATCACCCAGAGCTGCAGAATAACCAGGAATCGCATGCCCTTAATGGCGACGATTaGGTTGGTGTTCTTGTCCCT | + |
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Preference number: 5 (lower is better) Translates to: DLKVADHPELQNNQESHALNGDD*VGVLVP Trigger: AGGGACAAGAACACCAACCAAATCGTCGCCATTAAG...GGCATGCGATTCCTGGTTATTCTGCAGCTCTGGGTGATCTGCCACTTTAAGATC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR CAA 90 bp | AACTCTTTGAAGATAGCAGTACAAAACCATGGAAGACAAACACAAATCTCCCCGGCCACTGCTCTTCAGTaGGTGTACCCAGAGTTTCAA | + |
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Preference number: 5 (lower is better) Translates to: NSLKIAVQNHGRQTQISPATALQ*VYPEFQ Trigger: TTGAAACTCTGGGTACACCAACTGAAGAGCAGTGGC...CGGGGAGATTTGTGTTTGTCTTCCATGGTTTTGTACTGCTATCTTCAAAGAGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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| CDS-3UTR CAA 90 bp | AAGCCTCTCCCAATGCACTGTCAATTACATTTTAGAGACTGCAGTTATCCTTGTGACCTGTGTCCAAGTTaGATTTTCTTAATGGCGACG | + |
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Preference number: 5 (lower is better) Translates to: KPLPMHCQLHFRDCSYPCDLCPS*IFLMAT Trigger: CGTCGCCATTAAGAAAATCAAACTTGGACACAGGTC...ACAAGGATAACTGCAGTCTCTAAAATGTAATTGACAGTGCATTGGGAGAGGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000091299.8 |
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