Pregenerated sensors for CDK5RAP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018669Ensembl transcript IDs: ENSMUST00000103152.11, ENSMUST00000134732.8
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCTTCCTCATGGCTCTGTCTCCAAGTCCGCCTGACTTCTTGCTGGTaGGGCCCAGTAGCATCAGCCTGGGCTGTCCCACCTCCTCCTGGT | + |
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Preference number: 1 (lower is better) Translates to: PSSWLCLQVRLTSCW*GPVASAWAVPPPPG Trigger: ACCAGGAGGAGGTGGGACAGCCCAGGCTGATGCTACTGGGCCTCACCAGCAAGAAGTCAGGCGGACTTGGAGACAGAGCCATGAGGAAGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR TCA 90 bp | TACACCCTCCGGAGCCTCAGTTCCTGTCTCCAGCACGGTGATCTCTaGAGCAGCAGCAGCATCGTCACCCCAGTCTATCTTGTCAGCCCC | + |
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Preference number: 1 (lower is better) Translates to: YTLRSLSSCLQHGDL*SSSSIVTPVYLVSP Trigger: GGGGCTGACAAGATAGACTGGGGTGACGATGCTGCTGCTGCTTCAGAGATCACCGTGCTGGAGACAGGAACTGAGGCTCCGGAGGGTGTA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR TCA 90 bp | CCCGAGCTACACCCTCCGGAGCCTCAGTTCCTGTCTCCAGCACGGTaGTCTCTGAAGCAGCAGCAGCATCGTCACCCCAGTCTATCTTGT | + |
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Preference number: 1 (lower is better) Translates to: PELHPPEPQFLSPAR*SLKQQQHRHPSLSC Trigger: ACAAGATAGACTGGGGTGACGATGCTGCTGCTGCTTCAGAGATCACCGTGCTGGAGACAGGAACTGAGGCTCCGGAGGGTGTAGCTCGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR TCA 90 bp | GAACTGATTCCGAGTTTCAGGGTATTCCAGAAGAGTCAGAGCGTCTaGGCCCCGAGCTACACCCTCCGGAGCCTCAGTTCCTGTCTCCAG | + |
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Preference number: 1 (lower is better) Translates to: ELIPSFRVFQKSQSV*APSYTLRSLSSCLQ Trigger: CTGGAGACAGGAACTGAGGCTCCGGAGGGTGTAGCTCGGGGCTCAGACGCTCTGACTCTTCTGGAATACCCTGAAACTCGGAATCAGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGCTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGAAGGCTCCTCCAGCTGTaGTCGCTCCACCACAGAGGG | + |
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Preference number: 2 (lower is better) Translates to: TAPPGLPTGAGQHEPGDRRLLQL*SLHHRG Trigger: CCCTCTGTGGTGGAGCGACCACAGCTGGAGGAGCCT...TCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAGCAGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | CTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGAAGGGGCACATACCGCAGCATaGGCAGCACTTGCTCTGTGG | + |
|
Preference number: 2 (lower is better) Translates to: LPLGCRLGQDSMSLVTEGAHTAA*AALALW Trigger: CCACAGAGCAAGTGCTGCCCATGCTGCGGTATGTGC...CCCTTCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR TCA 90 bp | TGCTGCATCCGCAGACTGGTGAGCCGGCCGATCAGCTGCTGCAGCGTGGACACCCTGTCTCCAGCACGGTaGTCTCTGAAGCAGCAGCAG | + |
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Preference number: 2 (lower is better) Translates to: CCIRRLVSRPISCCSVDTLSPAR*SLKQQQ Trigger: CTGCTGCTGCTTCAGAGATCACCGTGCTGGAGACAG...GGTGTCCACGCTGCAGCAGCTGATCGGCCGGCTCACCAGTCTGCGGATGCAGCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | ACTGCTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGAGGGGCAAAGCTGTACTaGCCAGCCCCAAACCACATG | + |
|
Preference number: 2 (lower is better) Translates to: TAPPGLPTGAGQHEPGDRGAKLY*PAPNHM Trigger: CATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCC...TCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAGCAGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR GCA 90 bp | ACTGCTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGATCGATCTCATCCTCTTaGACCTGCTCAGGAGGCTCC | + |
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Preference number: 2 (lower is better) Translates to: TAPPGLPTGAGQHEPGDRSISSS*TCSGGS Trigger: GGAGCCTCCTGAGCAGGTGCAAGAGGATGAGATCGA...TCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAGCAGT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR GCA 90 bp | CTGCTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGAACTGGGGCTCTACAATTaGTCAAGGCCTCCTTGGATC | + |
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Preference number: 2 (lower is better) Translates to: LLPLGCRLGQDSMSLVTELGLYN*SRPPWI Trigger: GATCCAAGGAGGCCTTGAGCAATTGTAGAGCCCCAG...TTCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | GTGACAGAAGGGGGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCACCTCCTCCTGGTAGCTaGGAAGGAGGGTGGAGGACA | + |
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Preference number: 2 (lower is better) Translates to: VTEGGKAVLASPKPHAEPPPPGS*EGGWRT Trigger: TGTCCTCCACCCTCCTTCCCAGCTACCAGGAGGAGG...TGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCCCTTCTGTCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | GTGACAGAAGGGGGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCACCAGTAGCATCAGCCTaGGCTGTCCCACCTCCTCCT | + |
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Preference number: 2 (lower is better) Translates to: VTEGGKAVLASPKPHAEPPVASA*AVPPPP Trigger: AGGAGGAGGTGGGACAGCCCAGGCTGATGCTACTGG...TGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCCCTTCTGTCAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR TCA 90 bp | GGGGGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCATTTATAAATTCTCACAGGGCAGGCTaGCTGCTCCCCCTGGGCTGC | + |
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Preference number: 2 (lower is better) Translates to: GGKAVLASPKPHAEPFINSHRAG*LLPLGC Trigger: GCAGCCCAGGGGGAGCAGTCAGCCTGCCCTGTGAGA...ATTTATAAATGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCCCTCCTCCTGGTAGCTaGGAAGGAGGGTGGAGGACA | + |
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Preference number: 2 (lower is better) Translates to: EPLKTTACRDHGVTLPHGPPPGS*EGGWRT Trigger: TGTCCTCCACCCTCCTTCCCAGCTACCAGGAGGAGG...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR TCA 90 bp | CATCCTTGGCCTCTGACTCCAGGGAGATACCCCAGTCTATTCCAGGAGTCTCAGGCAGAGATCATGGTGTaGCCCTTCCTCATGGCTCTG | + |
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Preference number: 2 (lower is better) Translates to: HPWPLTPGRYPSLFQESQAEIMV*PFLMAL Trigger: CAGAGCCATGAGGAAGGGTCACACCATGATCTCTGC...CTGAGACTCCTGGAATAGACTGGGGTATCTCCCTGGAGTCAGAGGCCAAGGATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR TCA 90 bp | CTGCTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGAACCCCAAACCACATGCTaGACCATTTATAAATGCTTA | + |
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Preference number: 2 (lower is better) Translates to: LLPLGCRLGQDSMSLVTEPQTTC*TIYKCL Trigger: TAAGCATTTATAAATGGTTCAGCATGTGGTTTGGGG...TTCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR TCA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCCAGCACGGTGATCTCTaGAGCAGCAGCAGCATCGTC | + |
|
Preference number: 2 (lower is better) Translates to: EPLKTTACRDHGVTLPHGQHGDL*SSSSIV Trigger: GACGATGCTGCTGCTGCTTCAGAGATCACCGTGCTG...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCGGGGCAAAGCTGTACTaGCCAGCCCCAAACCACATG | + |
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Preference number: 2 (lower is better) Translates to: EPLKTTACRDHGVTLPHGGAKLY*PAPNHM Trigger: CATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCC...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | GGGGGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCATTTATAAATGCAGCACTTGCTCTGTaGGGCTGTCACACACAAACT | + |
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Preference number: 2 (lower is better) Translates to: GGKAVLASPKPHAEPFINAALAL*GCHTQT Trigger: AGTTTGTGTGTGACAGCCCCACAGAGCAAGTGCTGC...ATTTATAAATGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCGAAAAGCCTCTAACCTaGGGCTCTACAATTGCTCAA | + |
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Preference number: 2 (lower is better) Translates to: EPLKTTACRDHGVTLPHGEKPLT*GSTIAQ Trigger: TTGAGCAATTGTAGAGCCCCAGGTTAGAGGCTTTTC...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR TCA 90 bp | CATCCTTGGCCTCTGACTCCAGGGAGATACCCCAGTCTATTCCAGGAGTCTCAGTTATTAAGCCTCACTTaGCAACTAGAAGCAGCAAGT | + |
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Preference number: 2 (lower is better) Translates to: HPWPLTPGRYPSLFQESQLLSLT*QLEAAS Trigger: ACTTGCTGCTTCTAGTTGTCAAGTGAGGCTTAATAA...CTGAGACTCCTGGAATAGACTGGGGTATCTCCCTGGAGTCAGAGGCCAAGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR GCA 90 bp | GGGGGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCATTTATAAATTTGTTTATCAGACCCTaGCTCCCCAAACCACATTTC | + |
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Preference number: 2 (lower is better) Translates to: GGKAVLASPKPHAEPFINLFIRP*LPKPHF Trigger: GAAATGTGGTTTGGGGAGGCAGGGTCTGATAAACAA...ATTTATAAATGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CCA 90 bp | GGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCATTTATAAATGCTGAAAAGCCTCTAACCTaGGGCTCTACAATTGCTCAA | + |
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Preference number: 2 (lower is better) Translates to: GKAVLASPKPHAEPFINAEKPLT*GSTIAQ Trigger: TTGAGCAATTGTAGAGCCCCAGGTTAGAGGCTTTTC...AGCATTTATAAATGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR TCA 72 bp | TGGCTCTGTCTCCAAGTCCGCCTGACTTCTTGCTGGTaGGGCCCAGTAGCATCAGCCTGGGCTGTCCCACCT | + |
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Preference number: 3 (lower is better) Translates to: WLCLQVRLTSCW*GPVASAWAVPP Trigger: AGGTGGGACAGCCCAGGCTGATGCTACTGGGCCTCACCAGCAAGAAGTCAGGCGGACTTGGAGACAGAGCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR TCA 72 bp | CACCCTCCGGAGCCTCAGTTCCTGTCTCCAGCACGGTaGTCTCTGAAGCAGCAGCAGCATCGTCACCCCAGT | + |
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Preference number: 3 (lower is better) Translates to: HPPEPQFLSPAR*SLKQQQHRHPS Trigger: ACTGGGGTGACGATGCTGCTGCTGCTTCAGAGATCACCGTGCTGGAGACAGGAACTGAGGCTCCGGAGGGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR GCA 72 bp | CCAAAGTCACCCCAGTCGATCTCATCCTCTTGCACCTaGTCAGGAGGCTCCTCCAGCTGTGGTCGCTCCACC | + |
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Preference number: 3 (lower is better) Translates to: PKSPQSISSSCT*SGGSSSCGRST Trigger: GGTGGAGCGACCACAGCTGGAGGAGCCTCCTGAGCAGGTGCAAGAGGATGAGATCGACTGGGGTGACTTTGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR TCA 72 bp | CGGAGCCTCAGTTCCTGTCTCCAGCACGGTGATCTCTaGAGCAGCAGCAGCATCGTCACCCCAGTCTATCTT | + |
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Preference number: 3 (lower is better) Translates to: RSLSSCLQHGDL*SSSSIVTPVYL Trigger: AAGATAGACTGGGGTGACGATGCTGCTGCTGCTTCAGAGATCACCGTGCTGGAGACAGGAACTGAGGCTCCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| 3UTR-3UTR CAA 90 bp | AAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCTCTGTCTCCAGTCCGCCTGACTTCTaGCTGGTGAGGCCCAGTAGC | + |
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Preference number: 3 (lower is better) Translates to: KTTACRDHGVTLPHGSVSSPPDF*LVRPSS Trigger: GCTACTGGGCCTCACCAGCAAGAAGTCAGGCGGACT...GGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR CCA 72 bp | AACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATaGCTCTGTCTCCAAGTCCGCCTGACTTCTTGCTGG | + |
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Preference number: 3 (lower is better) Translates to: NCLQRSWCDPSS*LCLQVRLTSCW Trigger: CCAGCAAGAAGTCAGGCGGACTTGGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR TCA 72 bp | CTTCAACTTCAAGCAGGCTCAGCGTGGTGGTGCAAGTaGCTGCCAGCCACGAAGGAGAGTCACTTCCTTTTA | + |
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Preference number: 3 (lower is better) Translates to: LQLQAGSAWWCK*LPATKESHFLL Trigger: TAAAAGGAAGTGACTCTCCTTCGTGGCTGGCAGTCACTTGCACCACCACGCTGAGCCTGCTTGAAGTTGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR CCA 72 bp | GGTACCACCAAAAGCCAGGAAGAAAAGCCTCTAACCTaGGGCTCTACAATTGCTCAAGGCCTCCTTGGATCA | + |
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Preference number: 3 (lower is better) Translates to: GTTKSQEEKPLT*GSTIAQGLLGS Trigger: TGATCCAAGGAGGCCTTGAGCAATTGTAGAGCCCCAGGTTAGAGGCTTTTCTTCCTGGCTTTTGGTGGTACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR TCA 72 bp | GGGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTaGACCATTTATAAATGCTTATGGGGTCAGGTACCA | + |
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Preference number: 3 (lower is better) Translates to: GQSCTGQPQTTC*TIYKCLWGQVP Trigger: TGGTACCTGACCCCATAAGCATTTATAAATGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CAA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCTTTATTAAGCCTCACTaGACAACTAGAAGCAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: EPLKTTACRDHGVTLPHGFIKPH*TTRSSK Trigger: CTTGCTGCTTCTAGTTGTCAAGTGAGGCTTAATAAA...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CAA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCTTGCTCAAGGCCTCCTaGGATCAAGAATTAAGAAAA | + |
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Preference number: 3 (lower is better) Translates to: EPLKTTACRDHGVTLPHGLLKAS*DQELRK Trigger: TTTTCTTAATTCTTGATCCAAGGAGGCCTTGAGCAA...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| 3UTR-3UTR CAA 90 bp | GGGGGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCATTTATAAATTTTATTAAGCCTCACTaGACAACTAGAAGCAGCAAG | + |
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Preference number: 3 (lower is better) Translates to: GGKAVLASPKPHAEPFINFIKPH*TTRSSK Trigger: CTTGCTGCTTCTAGTTGTCAAGTGAGGCTTAATAAA...ATTTATAAATGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCCCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| CDS-3UTR GCA 90 bp | ACTGCTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGACAGGGACTGAGCCCCTaGCCCTATCTCAGCCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: TAPPGLPTGAGQHEPGDRQGLSP*PYLSQL Trigger: CAGCTGGCTGAGATAGGGGCAGGGGCTCAGTCCCTG...TCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAGCAGT 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR CCA 90 bp | CTCCCCCTGGGCTGCCGACTGGGGCAGGACAGCATGAGCCTGGTGACAGAAGGGCTCTCTGGCATGTCCTaGATGGCAGTGTTGATTTTT | + |
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Preference number: 4 (lower is better) Translates to: LPLGCRLGQDSMSLVTEGLSGMS*MAVLIF Trigger: AAAAATCAACACTGCCATCCAGGACATGCCAGAGAG...CCCTTCTGTCACCAGGCTCATGCTGTCCTGCCCCAGTCGGCAGCCCAGGGGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| CDS-3UTR TCA 90 bp | TGCTGCATCCGCAGACTGGTGAGCCGGCCGATCAGCTGCTGCAGCGTGGACACCCCATTTCATCCGTTGTaGAGAGTACCGGCCAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: CCIRRLVSRPISCCSVDTPFHPL*RVPAKN Trigger: ATTTTTGGCCGGTACTCTTCACAACGGATGAAATGG...GGTGTCCACGCTGCAGCAGCTGATCGGCCGGCTCACCAGTCTGCGGATGCAGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000134732.8 |
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| CDS-3UTR CCA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCAGGCTCCTCCAGCTGTaGTCGCTCCACCACAGAGGG | + |
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Preference number: 4 (lower is better) Translates to: EPLKTTACRDHGVTLPHGRLLQL*SLHHRG Trigger: CCCTCTGTGGTGGAGCGACCACAGCTGGAGGAGCCT...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| 3UTR CAA 72 bp | TTCCTCATGGCTCTGTCTCCAAGTCCGCCTGACTTCTaGCTGGTGAGGCCCAGTAGCATCAGCCTGGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: FLMALSPSPPDF*LVRPSSISLGC Trigger: ACAGCCCAGGCTGATGCTACTGGGCCTCACCAGCAAGAAGTCAGGCGGACTTGGAGACAGAGCCATGAGGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| CDS-3UTR TCA 90 bp | CAGAGATCATGGTGTGACCCTTCCTCATGGCTCTGTCTCCAAGTCCGCCTGACTCAGCACGGTGATCTCTaGAGCAGCAGCAGCATCGTC | + |
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Preference number: 4 (lower is better) Translates to: QRSWCDPSSWLCLQVRLTQHGDL*SSSSIV Trigger: GACGATGCTGCTGCTGCTTCAGAGATCACCGTGCTG...AGTCAGGCGGACTTGGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR CCA 90 bp | ACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCTCTGTCTCCAAGTCCCAGCCCCAGCATCCTTaGCCTCTGACTCCAGGGAGA | + |
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Preference number: 4 (lower is better) Translates to: TACRDHGVTLPHGSVSKSQPQHP*PLTPGR Trigger: TCTCCCTGGAGTCAGAGGCCAAGGATGCTGGGGCTG...GGACTTGGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR TCA 90 bp | ACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCTCTGTCTCCAAGTCCCTGTCTCCAGCACGGTaGTCTCTGAAGCAGCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: TACRDHGVTLPHGSVSKSLSPAR*SLKQQQ Trigger: CTGCTGCTGCTTCAGAGATCACCGTGCTGGAGACAG...GGACTTGGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR GCA 90 bp | GGCAAAGCTGTACTGGCCAGCCCCAAACCACATGCTGAACCATTTATAAATGCTCGGCCGATCAGCTGCTaGAGCGTGGACACCAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GKAVLASPKPHAEPFINARPISC*SVDTRL Trigger: CAGCCTGGTGTCCACGCTGCAGCAGCTGATCGGCCG...AGCATTTATAAATGGTTCAGCATGTGGTTTGGGGCTGGCCAGTACAGCTTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR CCA 90 bp | GTGTGCCTTAAGGCTGACAGGCCAGAGCCACTCAAGACAACTGCTTGCAGAGATGCACATACCGCAGCATaGGCAGCACTTGCTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: VCLKADRPEPLKTTACRDAHTAA*AALALW Trigger: CCACAGAGCAAGTGCTGCCCATGCTGCGGTATGTGC...ATCTCTGCAAGCAGTTGTCTTGAGTGGCTCTGGCCTGTCAGCCTTAAGGCACAC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR GCA 90 bp | AAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCTCTGTCTCCTCGATCTCATCCTCTTaGACCTGCTCAGGAGGCTCC | + |
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Preference number: 4 (lower is better) Translates to: KTTACRDHGVTLPHGSVSSISSS*TCSGGS Trigger: GGAGCCTCCTGAGCAGGTGCAAGAGGATGAGATCGA...GGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR CCA 90 bp | GTGTGCCTTAAGGCTGACAGGCCAGAGCCACTCAAGACAACTGCTTGCAGAGATTGCTTCAGCTTCTGCTaGAGGAACTCTGTCACTCGG | + |
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Preference number: 4 (lower is better) Translates to: VCLKADRPEPLKTTACRDCFSFC*RNSVTR Trigger: CCGAGTGACAGAGTTCCTCCAGCAGAAGCTGAAGCA...ATCTCTGCAAGCAGTTGTCTTGAGTGGCTCTGGCCTGTCAGCCTTAAGGCACAC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR GCA 90 bp | CAGGCCAGAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCAGAATCATAAACAGGTaGTGCATCCGCAGACTGGTG | + |
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Preference number: 4 (lower is better) Translates to: QARATQDNCLQRSWCDPSRIINR*CIRRLV Trigger: CACCAGTCTGCGGATGCAGCACCTGTTTATGATTCT...GGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTCTGGCCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR TCA 90 bp | CAGAGATCATGGTGTGACCCTTCCTCATGGCTCTGTCTCCAAGTCCGCCTGACTATCTTTCATCCGTTGTaGAGAGTACCGGCCAAAAAT | + |
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Preference number: 4 (lower is better) Translates to: QRSWCDPSSWLCLQVRLTIFHPL*RVPAKN Trigger: ATTTTTGGCCGGTACTCTTCACAACGGATGAAAGAT...AGTCAGGCGGACTTGGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR TCA 90 bp | GATCAAGAATTAAGAAAACATGTGCACAGCTTCAACTTCAAGCAGGCTCAGCGTAGCATCCTTGGCCTCTaGCTCCAGGGAGATACCCCA | + |
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Preference number: 4 (lower is better) Translates to: DQELRKHVHSFNFKQAQRSILGL*LQGDTP Trigger: TGGGGTATCTCCCTGGAGTCAGAGGCCAAGGATGCT...ACGCTGAGCCTGCTTGAAGTTGAAGCTGTGCACATGTTTTCTTAATTCTTGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR GCA 90 bp | GATCAAGAATTAAGAAAACATGTGCACAGCTTCAACTTCAAGCAGGCTCAGCGTAGCATGGGCAGCACTTaGTCTGTGGGGCTGTCACAC | + |
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Preference number: 4 (lower is better) Translates to: DQELRKHVHSFNFKQAQRSMGST*SVGLSH Trigger: GTGTGACAGCCCCACAGAGCAAGTGCTGCCCATGCT...ACGCTGAGCCTGCTTGAAGTTGAAGCTGTGCACATGTTTTCTTAATTCTTGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR CCA 90 bp | ACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCTCTGTCTCCAAGCTCTCTGGCATGTCCTaGATGGCAGTGTTGATTTTT | + |
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Preference number: 4 (lower is better) Translates to: TTACRDHGVTLPHGSVSKLSGMS*MAVLIF Trigger: AAAAATCAACACTGCCATCCAGGACATGCCAGAGAG...CTTGGAGACAGAGCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000103152.11 ENSMUST00000134732.8 |
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| CDS-3UTR CAA 90 bp | GCTCTGTCTCCAAGTCCGCCTGACTTCTTGCTGGTGAGGCCCAGTAGCATCAGCTCACCCCAGTCTATCTaGTCAGCCCCAGCATCCTTG | + |
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Preference number: 5 (lower is better) Translates to: ALSPSPPDFLLVRPSSISSPQSI*SAPASL Trigger: CAAGGATGCTGGGGCTGACAAGATAGACTGGGGTGA...GCTGATGCTACTGGGCCTCACCAGCAAGAAGTCAGGCGGACTTGGAGACAGAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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| CDS-3UTR CAA 90 bp | GAGCCACTCAAGACAACTGCTTGCAGAGATCATGGTGTGACCCTTCCTCATGGCGTCGATCTCATCCTCTaGCACCTGCTCAGGAGGCTC | + |
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Preference number: 5 (lower is better) Translates to: EPLKTTACRDHGVTLPHGVDLIL*HLLRRL Trigger: GAGCCTCCTGAGCAGGTGCAAGAGGATGAGATCGAC...GCCATGAGGAAGGGTCACACCATGATCTCTGCAAGCAGTTGTCTTGAGTGGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103152.11 |
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