Pregenerated sensors for CDK5R1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000048895Ensembl transcript IDs: ENSMUST00000053413.12, ENSMUST00000147694.2
Found 133 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | ACTGCCCCATGGGGCTCCAGGCGCGGTCACCGTGGCAGCAGGATGTaGGGATGGGCTGCAGCGAGGCCTGCACTCAGCAAGCCTTGCAGG | + |
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Preference number: 1 (lower is better) Translates to: TAPWGSRRGHRGSRM*GWAAARPALSKPCR Trigger: CCTGCAAGGCTTGCTGAGTGCAGGCCTCGCTGCAGCCCATCCTCACATCCTGCTGCCACGGTGACCGCGCCTGGAGCCCCATGGGGCAGT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 90 bp | GGGCTCCAGGCGCGGTCACCGTGGCAGCAGGATGTGAGGATGGGCTaGAGCGAGGCCTGCACTCAGCAAGCCTTGCAGGGCTTTCCAGCT | + |
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Preference number: 1 (lower is better) Translates to: GLQARSPWQQDVRMG*SEACTQQALQGFPA Trigger: AGCTGGAAAGCCCTGCAAGGCTTGCTGAGTGCAGGCCTCGCTGCAGCCCATCCTCACATCCTGCTGCCACGGTGACCGCGCCTGGAGCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 90 bp | CGGTCACCGTGGCAGCAGGATGTGAGGATGGGCTGCAGCGAGGCCTaGACTCAGCAAGCCTTGCAGGGCTTTCCAGCTCCGTGTCAGACC | + |
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Preference number: 1 (lower is better) Translates to: RSPWQQDVRMGCSEA*TQQALQGFPAPCQT Trigger: GGTCTGACACGGAGCTGGAAAGCCCTGCAAGGCTTGCTGAGTGCAGGCCTCGCTGCAGCCCATCCTCACATCCTGCTGCCACGGTGACCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 90 bp | GTCTCTGCAGGCTCCTGCACTGATGCCCCAGGGCTGTGCAGATCTTaGCTCACTCACAACCTCCTGGATCCTGAGTCAGGACAGCCAGCT | + |
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Preference number: 1 (lower is better) Translates to: VSAGSCTDAPGLCRS*LTHNLLDPESGQPA Trigger: AGCTGGCTGTCCTGACTCAGGATCCAGGAGGTTGTGAGTGAGGCAAGATCTGCACAGCCCTGGGGCATCAGTGCAGGAGCCTGCAGAGAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 90 bp | GCAGCTGACAGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTaGTCAGCTGCACAGTCACCAAGCTTCCAAACTGATCAGGGGTCA | + |
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Preference number: 1 (lower is better) Translates to: AADRDRWAATPCSWK*SAAQSPSFQTDQGS Trigger: TGACCCCTGATCAGTTTGGAAGCTTGGTGACTGTGCAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCTGTCAGCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | GCCAGCTCCAGGAGCCTTCAAGAGAAACAATACCCAGAAAAGGGCTaGTTCCTCCAGGGCCACCAGCCATGGGCCCCAGCTCCGATCATG | + |
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Preference number: 1 (lower is better) Translates to: ASSRSLQEKQYPEKG*FLQGHQPWAPAPIM Trigger: CATGATCGGAGCTGGGGCCCATGGCTGGTGGCCCTGGAGGAATCAGCCCTTTTCTGGGTATTGTTTCTCTTGAAGGCTCCTGGAGCTGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | CCTGGATCCATCGTGGGTACAGGTGACATGGGCAAGTCAGTCCCTTaGGTCCCGGAAAGTGAGTGGTCAGCAGCCGAAGTGGCTCTGAAT | + |
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Preference number: 1 (lower is better) Translates to: PGSIVGTGDMGKSVP*VPESEWSAAEVALN Trigger: ATTCAGAGCCACTTCGGCTGCTGACCACTCACTTTCCGGGACTCAAGGGACTGACTTGCCCATGTCACCTGTACCCACGATGGATCCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | AGTCTGTCAGGTCCGCTTCCCCACCTCTGTGAGTACGTCGTCGGCTaGAAGGCTCTGCTCCGGGCCTCTTCCATTGAGACCTCAATTTCA | + |
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Preference number: 1 (lower is better) Translates to: SLSGPLPHLCEYVVG*KALLRASSIETSIS Trigger: TGAAATTGAGGTCTCAATGGAAGAGGCCCGGAGCAGAGCCTTTCAGCCGACGACGTACTCACAGAGGTGGGGAAGCGGACCTGACAGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CCA 90 bp | CCGATCATGGGACAGTGGGAAGCCTCATCTACCCTGGATCCATCGTaGGTACAGGTGACATGGGCAAGTCAGTCCCTTGAGTCCCGGAAA | + |
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Preference number: 1 (lower is better) Translates to: PIMGQWEASSTLDPS*VQVTWASQSLESRK Trigger: TTTCCGGGACTCAAGGGACTGACTTGCCCATGTCACCTGTACCCACGATGGATCCAGGGTAGATGAGGCTTCCCACTGTCCCATGATCGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | CCCAGGGCTGTGCAGATCTTGCCTCACTCACAACCTCCTGGATCCTaGGTCAGGACAGCCAGCTCCAGGAGCCTTCAAGAGAAACAATAC | + |
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Preference number: 1 (lower is better) Translates to: PRAVQILPHSQPPGS*VRTASSRSLQEKQY Trigger: GTATTGTTTCTCTTGAAGGCTCCTGGAGCTGGCTGTCCTGACTCAGGATCCAGGAGGTTGTGAGTGAGGCAAGATCTGCACAGCCCTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 90 bp | GTCCGCTTCCCCACCTCTGTGAGTACGTCGTCGGCTGAAAGGCTCTaGTCCGGGCCTCTTCCATTGAGACCTCAATTTCACAGCTTTATC | + |
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Preference number: 1 (lower is better) Translates to: VRFPTSVSTSSAERL*SGPLPLRPQFHSFI Trigger: GATAAAGCTGTGAAATTGAGGTCTCAATGGAAGAGGCCCGGAGCAGAGCCTTTCAGCCGACGACGTACTCACAGAGGTGGGGAAGCGGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 90 bp | GGGCAGCAGGAGAGGAAGAGGAAACCCTCCGCAGTATCTTCACATTaGTCTTTGTTCCCCAAAGCTGGAGTGAGGGCCATGCAAGAAGAC | + |
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Preference number: 1 (lower is better) Translates to: GQQERKRKPSAVSSH*SLFPKAGVRAMQED Trigger: GTCTTCTTGCATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCGGAGGGTTTCCTCTTCCTCTCCTGCTGCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 90 bp | CCCTTCACGGTTGTAAGGAAAAGAGAAAAATCCAATCCTGAACTATaGTCCTCCCGTGGCTCCTCCTCGGCGCTCGTGATTCTCACGGCC | + |
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Preference number: 1 (lower is better) Translates to: PFTVVRKREKSNPEL*SSRGSSSALVILTA Trigger: GGCCGTGAGAATCACGAGCGCCGAGGAGGAGCCACGGGAGGAGCATAGTTCAGGATTGGATTTTTCTCTTTTCCTTACAACCGTGAAGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | CCAATCCTGAACTATGCTCCTCCCGTGGCTCCTCCTCGGCGCTCGTaGTTCTCACGGCCAGCCATCTGCTCTAAGGTTATTTTTCTTAAG | + |
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Preference number: 1 (lower is better) Translates to: PILNYAPPVAPPRRS*FSRPAICSKVIFLK Trigger: CTTAAGAAAAATAACCTTAGAGCAGATGGCTGGCCGTGAGAATCACGAGCGCCGAGGAGGAGCCACGGGAGGAGCATAGTTCAGGATTGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | CCTCCGCAGTATCTTCACATTGCTCTTTGTTCCCCAAAGCTGGAGTaGGGGCCATGCAAGAAGACTAGCTCCCTTCTCTTGGACCACTTC | + |
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Preference number: 1 (lower is better) Translates to: PPQYLHIALCSPKLE*GPCKKTSSLLLDHF Trigger: GAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCTTGCATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCGGAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CCA 90 bp | GAAACCCTCCGCAGTATCTTCACATTGCTCTTTGTTCCCCAAAGCTaGAGTGAGGGCCATGCAAGAAGACTAGCTCCCTTCTCTTGGACC | + |
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Preference number: 1 (lower is better) Translates to: ETLRSIFTLLFVPQS*SEGHARRLAPFSWT Trigger: GGTCCAAGAGAAGGGAGCTAGTCTTCTTGCATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCGGAGGGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | TTTGCTCGAACACTTAAGTCTAGCGGTCGTTCCTTTACACAGTACTaGGAGCCAGCGCAAGCAGAGAGGACACGGGCTTCACAATGGAAC | + |
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Preference number: 1 (lower is better) Translates to: FARTLKSSGRSFTQY*EPAQAERTRASQWN Trigger: GTTCCATTGTGAAGCCCGTGTCCTCTCTGCTTGCGCTGGCTCTCAGTACTGTGTAAAGGAACGACCGCTAGACTTAAGTGTTCGAGCAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 90 bp | ACATCAACCCTTCACGGTTGTAAGGAAAAGAGAAAAATCCAATCCTaGACTATGCTCCTCCCGTGGCTCCTCCTCGGCGCTCGTGATTCT | + |
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Preference number: 1 (lower is better) Translates to: TSTLHGCKEKRKIQS*TMLLPWLLLGARDS Trigger: AGAATCACGAGCGCCGAGGAGGAGCCACGGGAGGAGCATAGTTCAGGATTGGATTTTTCTCTTTTCCTTACAACCGTGAAGGGTTGATGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR TCA 90 bp | CAGCTGACAGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTGCTCAGCTGTGCAGGCTCCTGCACTaGTGCCCCAGGGCTGTGCAG | + |
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Preference number: 2 (lower is better) Translates to: QLTGIGGRPHPAAGSAQLCRLLH*CPRAVQ Trigger: CTGCACAGCCCTGGGGCATCAGTGCAGGAGCCTGCA...CAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCTGTCAGCTG 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR GCA 90 bp | GGACACCTGAAGGTCTTCTCCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCGCACTCAGCAAGCCTTaGAGGGCTTTCCAGCTCCGT | + |
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Preference number: 2 (lower is better) Translates to: GHLKVFSLLPHGAPGAVTALSKP*RAFQLR Trigger: ACGGAGCTGGAAAGCCCTGCAAGGCTTGCTGAGTGC...GGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAGAAGACCTTCAGGTGTCC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR GCA 90 bp | ACAGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTGCTCAGCTGCACAGTGATGCCCCAGGGCTGTaGAGATCTTGCCTCACTCAC | + |
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Preference number: 2 (lower is better) Translates to: TGIGGRPHPAAGSAQLHSDAPGL*RSCLTH Trigger: GTGAGTGAGGCAAGATCTGCACAGCCCTGGGGCATC...ACTGTGCAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR GCA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGGTCTCTGCAGGCTCCTaGACTGATGCCCCAGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: RRLAPFSWTTSKPQATSLVSAGS*TDAPGL Trigger: CAGCCCTGGGGCATCAGTGCAGGAGCCTGCAGAGAC...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | GAACCAAGGAAGCTCTTTCCTCAGTTGCCGACCACTTCTGAAATATGCACCTTCCTCCCTACTGCCCCATaGGGCTCCAGGCGCGGTCAC | + |
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Preference number: 2 (lower is better) Translates to: EPRKLFPQLPTTSEICTFLPTAP*GSRRGH Trigger: GTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAG...GAAGGTGCATATTTCAGAAGTGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR TCA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGTACCCAGAAAAGGGCTaGTTCCTCCAGGGCCACCAG | + |
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Preference number: 2 (lower is better) Translates to: RRLAPFSWTTSKPQATSLYPEKG*FLQGHQ Trigger: CTGGTGGCCCTGGAGGAATCAGCCCTTTTCTGGGTA...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | CTCGAACACTTAAGTCTAGCGGTCGTTCCTTTACACAGTACTGAGAGCCAGCGCGCCACACCCTGCAGCTaGAAGTGCTCAGCTGCACAG | + |
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Preference number: 2 (lower is better) Translates to: LEHLSLAVVPLHSTESQRATPCS*KCSAAQ Trigger: CTGTGCAGCTGAGCACTTCCAGCTGCAGGGTGTGGC...GCGCTGGCTCTCAGTACTGTGTAAAGGAACGACCGCTAGACTTAAGTGTTCGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | TGCAAGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGACCCTGGATCCATCGTaGGTACAGGTGACATGGGCA | + |
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Preference number: 2 (lower is better) Translates to: CKKTSSLLLDHFQTPSHQTLDPS*VQVTWA Trigger: TGCCCATGTCACCTGTACCCACGATGGATCCAGGGT...CTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCTTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGGCAGAGACAAAAGGATaGGAGGGGAGCTCTGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: RRLAPFSWTTSKPQATSLAETKG*EGSSVL Trigger: CAGGACAGAGCTCCCCTCCCATCCTTTTGTCTCTGC...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CAA 90 bp | TGGGCAGCAGGAGAGGAAGAGGAAACCCTCCGCAGTATCTTCACATaGCTCTTTGTTCCCCAAAGCTGGAGTGAGGGCCATGCAAGAAGA | + |
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Preference number: 2 (lower is better) Translates to: WAAGEEEETLRSIFT*LFVPQSWSEGHARR Trigger: TCTTCTTGCATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCGGAGGGTTTCCTCTTCCTCTCCTGCTGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | TTCAAGAGAAACAATACCCAGAAAAGGGCTGATTCCTCCAGGGCCACCAGCCATCCCCAGCTCCGATCATaGGACAGTGGGAAGCCTCAT | + |
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Preference number: 2 (lower is better) Translates to: FKRNNTQKRADSSRATSHPQLRS*DSGKPH Trigger: ATGAGGCTTCCCACTGTCCCATGATCGGAGCTGGGG...ATGGCTGGTGGCCCTGGAGGAATCAGCCCTTTTCTGGGTATTGTTTCTCTTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | GAACCAAGGAAGCTCTTTCCTCAGTTGCCGACCACTTCTGAAATATGCACCTTCCCCAAGGAAAGAACGTaGGAAGAGGCCCTTGGTGGC | + |
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Preference number: 2 (lower is better) Translates to: EPRKLFPQLPTTSEICTFPKERT*EEALGG Trigger: GCCACCAAGGGCCTCTTCCCACGTTCTTTCCTTGGG...GAAGGTGCATATTTCAGAAGTGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | GAACCAAGGAAGCTCTTTCCTCAGTTGCCGACCACTTCTGAAATATGCACCTTCTCACTCACAACCTCCTaGATCCTGAGTCAGGACAGC | + |
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Preference number: 2 (lower is better) Translates to: EPRKLFPQLPTTSEICTFSLTTS*ILSQDS Trigger: GCTGTCCTGACTCAGGATCCAGGAGGTTGTGAGTGA...GAAGGTGCATATTTCAGAAGTGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR GCA 90 bp | GAACCAAGGAAGCTCTTTCCTCAGTTGCCGACCACTTCTGAAATATGCACCTTCTCTGTCTCAGTAGGTTaGACAGAGCAAAGCCTCTCC | + |
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Preference number: 2 (lower is better) Translates to: EPRKLFPQLPTTSEICTFSVSVG*TEQSLS Trigger: GGAGAGGCTTTGCTCTGTGCAACCTACTGAGACAGA...GAAGGTGCATATTTCAGAAGTGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR GCA 90 bp | TTCACGGTTGTAAGGAAAAGAGAAAAATCCAATCCTGAACTATGCTCCTCCCGTCCCTGCAGCTGGAAGTaGTCAGCTGCACAGTCACCA | + |
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Preference number: 2 (lower is better) Translates to: FTVVRKREKSNPELCSSRPCSWK*SAAQSP Trigger: TGGTGACTGTGCAGCTGAGCACTTCCAGCTGCAGGG...ACGGGAGGAGCATAGTTCAGGATTGGATTTTTCTCTTTTCCTTACAACCGTGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | GAACCAAGGAAGCTCTTTCCTCAGTTGCCGACCACTTCTGAAATATGCACCTTCAGAGACGGAGCTGCCTaGAAACAGCTTAAAATTAAC | + |
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Preference number: 2 (lower is better) Translates to: EPRKLFPQLPTTSEICTFRDGAA*KQLKIN Trigger: GTTAATTTTAAGCTGTTTCCAGGCAGCTCCGTCTCT...GAAGGTGCATATTTCAGAAGTGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CCA 90 bp | TTCACGGTTGTAAGGAAAAGAGAAAAATCCAATCCTGAACTATGCTCCTCCCGTACACGGGCTTCACAATaGAACCAAGGAAGCTCTTTC | + |
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Preference number: 2 (lower is better) Translates to: FTVVRKREKSNPELCSSRTRASQ*NQGSSF Trigger: GAAAGAGCTTCCTTGGTTCCATTGTGAAGCCCGTGT...ACGGGAGGAGCATAGTTCAGGATTGGATTTTTCTCTTTTCCTTACAACCGTGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CAA 90 bp | GTGTGTTCTAAAAGTGTCTTCATAGCAGCATGTCAGATAGGTTCTTaGCTCGAACACTTAAGTCTAGCGGTCGTTCCTTTACACAGTACT | + |
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Preference number: 2 (lower is better) Translates to: VCSKSVFIAACQIGS*LEHLSLAVVPLHST Trigger: AGTACTGTGTAAAGGAACGACCGCTAGACTTAAGTGTTCGAGCAAAGAACCTATCTGACATGCTGCTATGAAGACACTTTTAGAACACAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR GCA 90 bp | TTCACGGTTGTAAGGAAAAGAGAAAAATCCAATCCTGAACTATGCTCCTCCCGTGTAATTGTCCCCAAATaGATCTGTCTCAGTAGGTTG | + |
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Preference number: 2 (lower is better) Translates to: FTVVRKREKSNPELCSSRVIVPK*ICLSRL Trigger: CAACCTACTGAGACAGATGCATTTGGGGACAATTAC...ACGGGAGGAGCATAGTTCAGGATTGGATTTTTCTCTTTTCCTTACAACCGTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR GCA 90 bp | TTCACGGTTGTAAGGAAAAGAGAAAAATCCAATCCTGAACTATGCTCCTCCCGTTCACGGCCAGCCATCTaGTCTAAGGTTATTTTTCTT | + |
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Preference number: 2 (lower is better) Translates to: FTVVRKREKSNPELCSSRSRPAI*SKVIFL Trigger: AAGAAAAATAACCTTAGAGCAGATGGCTGGCCGTGA...ACGGGAGGAGCATAGTTCAGGATTGGATTTTTCTCTTTTCCTTACAACCGTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CCA 72 bp | CCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCGTaGCAGCAGGATGTGAGGATGGGCTGCAGCGAGGCC | + |
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Preference number: 3 (lower is better) Translates to: PYCPMGLQARSP*QQDVRMGCSEA Trigger: GGCCTCGCTGCAGCCCATCCTCACATCCTGCTGCCACGGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 72 bp | GCGCGGTCACCGTGGCAGCAGGATGTGAGGATGGGCTaGAGCGAGGCCTGCACTCAGCAAGCCTTGCAGGGC | + |
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Preference number: 3 (lower is better) Translates to: ARSPWQQDVRMG*SEACTQQALQG Trigger: GCCCTGCAAGGCTTGCTGAGTGCAGGCCTCGCTGCAGCCCATCCTCACATCCTGCTGCCACGGTGACCGCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 72 bp | TGGCAGCAGGATGTGAGGATGGGCTGCAGCGAGGCCTaGACTCAGCAAGCCTTGCAGGGCTTTCCAGCTCCG | + |
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Preference number: 3 (lower is better) Translates to: WQQDVRMGCSEA*TQQALQGFPAP Trigger: CGGAGCTGGAAAGCCCTGCAAGGCTTGCTGAGTGCAGGCCTCGCTGCAGCCCATCCTCACATCCTGCTGCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR TCA 72 bp | GGTCCGCTTCCCCACCTCTGTGAGTACGTCGTCGGCTaGAAGGCTCTGCTCCGGGCCTCTTCCATTGAGACC | + |
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Preference number: 3 (lower is better) Translates to: GPLPHLCEYVVG*KALLRASSIET Trigger: GGTCTCAATGGAAGAGGCCCGGAGCAGAGCCTTTCAGCCGACGACGTACTCACAGAGGTGGGGAAGCGGACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CCA 72 bp | TCCAGGGCCACCAGCCATGGGCCCCAGCTCCGATCATaGGACAGTGGGAAGCCTCATCTACCCTGGATCCAT | + |
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Preference number: 3 (lower is better) Translates to: SRATSHGPQLRS*DSGKPHLPWIH Trigger: ATGGATCCAGGGTAGATGAGGCTTCCCACTGTCCCATGATCGGAGCTGGGGCCCATGGCTGGTGGCCCTGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CCA 72 bp | CAGGGCTGTGCAGATCTTGCCTCACTCACAACCTCCTaGATCCTGAGTCAGGACAGCCAGCTCCAGGAGCCT | + |
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Preference number: 3 (lower is better) Translates to: QGCADLASLTTS*ILSQDSQLQEP Trigger: AGGCTCCTGGAGCTGGCTGTCCTGACTCAGGATCCAGGAGGTTGTGAGTGAGGCAAGATCTGCACAGCCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR-3UTR CAA 90 bp | ACAGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTGCTCAGCTGCACAGTGGCGCTGTTCTGGCTTaGTACACAGGGTACAAACTG | + |
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Preference number: 3 (lower is better) Translates to: TGIGGRPHPAAGSAQLHSGAVLA*YTGYKL Trigger: CAGTTTGTACCCTGTGTACAAAGCCAGAACAGCGCC...ACTGTGCAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 72 bp | CATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTaGACTGATGCCCCAGGGCTGTGCAGATCTTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: HGQQSSAVSAGS*TDAPGLCRSCL Trigger: GAGGCAAGATCTGCACAGCCCTGGGGCATCAGTGCAGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR GCA 72 bp | AGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTaGTCAGCTGCACAGTCACCAAGCTTCCAAACTGAT | + |
|
Preference number: 3 (lower is better) Translates to: RDRWAATPCSWK*SAAQSPSFQTD Trigger: ATCAGTTTGGAAGCTTGGTGACTGTGCAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR TCA 72 bp | GTGCAGATCTTGCCTCACTCACAACCTCCTGGATCCTaGGTCAGGACAGCCAGCTCCAGGAGCCTTCAAGAG | + |
|
Preference number: 3 (lower is better) Translates to: VQILPHSQPPGS*VRTASSRSLQE Trigger: CTCTTGAAGGCTCCTGGAGCTGGCTGTCCTGACTCAGGATCCAGGAGGTTGTGAGTGAGGCAAGATCTGCAC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR TCA 72 bp | TCAACAGTCATCAGCAGTCTCTGCAGGCTCCTGCACTaGTGCCCCAGGGCTGTGCAGATCTTGCCTCACTCA | + |
|
Preference number: 3 (lower is better) Translates to: STVISSLCRLLH*CPRAVQILPHS Trigger: TGAGTGAGGCAAGATCTGCACAGCCCTGGGGCATCAGTGCAGGAGCCTGCAGAGACTGCTGATGACTGTTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR GCA 72 bp | CCCACCTCTGTGAGTACGTCGTCGGCTGAAAGGCTCTaGTCCGGGCCTCTTCCATTGAGACCTCAATTTCAC | + |
|
Preference number: 3 (lower is better) Translates to: PTSVSTSSAERL*SGPLPLRPQFH Trigger: GTGAAATTGAGGTCTCAATGGAAGAGGCCCGGAGCAGAGCCTTTCAGCCGACGACGTACTCACAGAGGTGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CCA 72 bp | GGACAGTGGGAAGCCTCATCTACCCTGGATCCATCGTaGGTACAGGTGACATGGGCAAGTCAGTCCCTTGAG | + |
|
Preference number: 3 (lower is better) Translates to: GQWEASSTLDPS*VQVTWASQSLE Trigger: CTCAAGGGACTGACTTGCCCATGTCACCTGTACCCACGATGGATCCAGGGTAGATGAGGCTTCCCACTGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CCA 72 bp | GAGCCAGCGCAAGCAGAGAGGACACGGGCTTCACAATaGAACCAAGGAAGCTCTTTCCTCAGTTGCCGACCA | + |
|
Preference number: 3 (lower is better) Translates to: EPAQAERTRASQ*NQGSSFLSCRP Trigger: TGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTCCATTGTGAAGCCCGTGTCCTCTCTGCTTGCGCTGGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CCA 72 bp | AGTGAGGGCCATGCAAGAAGACTAGCTCCCTTCTCTTaGACCACTTCCAAACCCCAAGCCACCAGTCTGGGA | + |
|
Preference number: 3 (lower is better) Translates to: SEGHARRLAPFS*TTSKPQATSLG Trigger: TCCCAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCTTGCATGGCCCTCACT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR-3UTR CAA 90 bp | AGCAAACCAGGGCCGTGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTAAACAAGTGGAATCCTaGAGCCAGGATACCGGCTAC | + |
|
Preference number: 3 (lower is better) Translates to: SKPGPCMVNSHQQSLQAPKQVES*SQDTGY Trigger: GTAGCCGGTATCCTGGCTCAAGGATTCCACTTGTTT...AGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCACGGCCCTGGTTTGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR-3UTR CAA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGAGGGCTGTGCAGATCTaGCCTCACTCACAACCTCCT | + |
|
Preference number: 3 (lower is better) Translates to: RRLAPFSWTTSKPQATSLRAVQI*PHSQPP Trigger: AGGAGGTTGTGAGTGAGGCAAGATCTGCACAGCCCT...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CCA 72 bp | TTAACCAGCACTAACGTGGGAGCAGAGACAAAAGGATaGGAGGGGAGCTCTGTCCTGCCAGGAAAGGAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: LTSTNVGAETKG*EGSSVLPGKES Trigger: GCTTTCCTTTCCTGGCAGGACAGAGCTCCCCTCCCATCCTTTTGTCTCTGCTCCCACGTTAGTGCTGGTTAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR TCA 72 bp | ACACTTAAGTCTAGCGGTCGTTCCTTTACACAGTACTaGGAGCCAGCGCAAGCAGAGAGGACACGGGCTTCA | + |
|
Preference number: 3 (lower is better) Translates to: TLKSSGRSFTQY*EPAQAERTRAS Trigger: TGAAGCCCGTGTCCTCTCTGCTTGCGCTGGCTCTCAGTACTGTGTAAAGGAACGACCGCTAGACTTAAGTGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CCA 72 bp | CGCAGTATCTTCACATTGCTCTTTGTTCCCCAAAGCTaGAGTGAGGGCCATGCAAGAAGACTAGCTCCCTTC | + |
|
Preference number: 3 (lower is better) Translates to: RSIFTLLFVPQS*SEGHARRLAPF Trigger: GAAGGGAGCTAGTCTTCTTGCATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR-3UTR CAA 90 bp | CTCGAACACTTAAGTCTAGCGGTCGTTCCTTTACACAGTACTGAGAGCCAGCGCCGCAGTATCTTCACATaGCTCTTTGTTCCCCAAAGC | + |
|
Preference number: 3 (lower is better) Translates to: LEHLSLAVVPLHSTESQRRSIFT*LFVPQS Trigger: GCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCG...GCGCTGGCTCTCAGTACTGTGTAAAGGAACGACCGCTAGACTTAAGTGTTCGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR GCA 72 bp | CAGGGGTCACACTTCCATCGTGTAATTGTCCCCAAATaGATCTGTCTCAGTAGGTTGCACAGAGCAAAGCCT | + |
|
Preference number: 3 (lower is better) Translates to: QGSHFHRVIVPK*ICLSRLHRAKP Trigger: AGGCTTTGCTCTGTGCAACCTACTGAGACAGATGCATTTGGGGACAATTACACGATGGAAGTGTGACCCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR-3UTR CAA 90 bp | ATTCTCCTGGTTCGCATGCACGGTACCACTGTAAAAGCAACAAGAATAAAGGGGACTAGCTCCCTTCTCTaGGACCACTTCCAAACCCCA | + |
|
Preference number: 3 (lower is better) Translates to: ILLVRMHGTTVKATRIKGTSSLL*DHFQTP Trigger: TGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGT...CCCCTTTATTCTTGTTGCTTTTACAGTGGTACCGTGCATGCGAACCAGGAGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR TCA 72 bp | TATCTTCACATTGCTCTTTGTTCCCCAAAGCTGGAGTaGGGGCCATGCAAGAAGACTAGCTCCCTTCTCTTG | + |
|
Preference number: 3 (lower is better) Translates to: YLHIALCSPKLE*GPCKKTSSLLL Trigger: CAAGAGAAGGGAGCTAGTCTTCTTGCATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR GCA 72 bp | GCTTCACAATGGAACCAAGGAAGCTCTTTCCTCAGTTaGCGACCACTTCTGAAATATGCACCTTCTCAAAAA | + |
|
Preference number: 3 (lower is better) Translates to: ASQWNQGSSFLS*RPLLKYAPSQK Trigger: TTTTTGAGAAGGTGCATATTTCAGAAGTGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTCCATTGTGAAGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | CAGCTGACAGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTGCTCAGCTGGAGGAGACCCCAGTCTaGGAGCCAGAAAGCTGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: QLTGIGGRPHPAAGSAQLEETPV*EPESWL Trigger: CAGCCAGCTTTCTGGCTCCCAGACTGGGGTCTCCTC...CAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCTGTCAGCTG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | ACAGAACAAAGATCACGGGCACCAGCGAGAGGCCTTAGCATGCAAGTGGGCACCGTGTCCCTGCAGAGGTaGTGGCAGGGTGCGGGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: TEQRSRAPARGLSMQVGTVSLQR*WQGAGP Trigger: AGGCCCCGCACCCTGCCATCACCTCTGCAGGGACAC...GGTGCCCACTTGCATGCTAAGGCCTCTCGCTGGTGCCCGTGATCTTTGTTCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | TCTTCTCCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCGTGGCAGCAGGATCCACCTCAGAGGAGATaGCATCCCTGCAGAGCATGT | + |
|
Preference number: 4 (lower is better) Translates to: SSPYCPMGLQARSPWQQDPPQRR*HPCRAC Trigger: ACATGCTCTGCAGGGATGTCATCTCCTCTGAGGTGG...ATCCTGCTGCCACGGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAGAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR GCA 90 bp | TCTTCTCCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCGTGGCAGCAGGATTGTCCTTGGCGTTCTTaGTGTTCTGCACGGCCGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SSPYCPMGLQARSPWQQDCPWRS*CSARPC Trigger: ACACGGCCGTGCAGAACAGCAAGAACGCCAAGGACA...ATCCTGCTGCCACGGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAGAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR GCA 90 bp | TCTTCTCCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCGTGGCAGCAGGATTGTTGCTCTGGTAGCTaGTGTTGGGCTGCGCCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: SSPYCPMGLQARSPWQQDCCSGS*CWAAPS Trigger: AGAAGGCGCAGCCCAACAGCAGCTACCAGAGCAACA...ATCCTGCTGCCACGGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAGAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | ACAGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTGCTCAGCTGCACAGTTGGCCTTCCGATAGCTaGGGGATAGGGACAGCACCG | + |
|
Preference number: 4 (lower is better) Translates to: TGIGGRPHPAAGSAQLHSWPSDS*GIGTAP Trigger: CGGTGCTGTCCCTATCCCCCAGCTATCGGAAGGCCA...ACTGTGCAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | TCTTCTCCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCGTGGCAGCAGGATTCTGGTAGCTGCTGTTaGGCTGCGCCTTCTTGGAGT | + |
|
Preference number: 4 (lower is better) Translates to: SSPYCPMGLQARSPWQQDSGSCC*AAPSWS Trigger: ACTCCAAGAAGGCGCAGCCCAACAGCAGCTACCAGA...ATCCTGCTGCCACGGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAGAAGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | AGCAAACCAGGGCCGTGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTTGGGAGCCAGAAAGCTaGCTGGCTGGGGGTGCGGGC | + |
|
Preference number: 4 (lower is better) Translates to: SKPGPCMVNSHQQSLQAPWEPES*LAGGAG Trigger: GCCCGCACCCCCAGCCAGCCAGCTTTCTGGCTCCCA...AGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCACGGCCCTGGTTTGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | GGACACCTGAAGGTCTTCTCCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCCGCTTCTTGTCCTCCTaGCCGCTCTCATTCTTCAAG | + |
|
Preference number: 4 (lower is better) Translates to: GHLKVFSLLPHGAPGAVTRFLSS*PLSFFK Trigger: CTTGAAGAATGAGAGCGGTCAGGAGGACAAGAAGCG...GGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAGAAGACCTTCAGGTGTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR GCA 90 bp | TGCAAGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGGGGAGCGGTCCACGCTaGGCAGCCAGAGCACGGGGT | + |
|
Preference number: 4 (lower is better) Translates to: CKKTSSLLLDHFQTPSHQGSGPR*AARARG Trigger: ACCCCGTGCTCTGGCTGCGCAGCGTGGACCGCTCCC...CTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCTTGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | AGCAAACCAGGGCCGTGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTTGGACGCCTGGACGATaGCCCGTTTGGGTGTCCCTG | + |
|
Preference number: 4 (lower is better) Translates to: SKPGPCMVNSHQQSLQAPWTPGR*PVWVSL Trigger: CAGGGACACCCAAACGGGTCATCGTCCAGGCGTCCA...AGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCACGGCCCTGGTTTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | ACAGAACAAAGATCACGGGCACCAGCGAGAGGCCTTAGCATGCAAGTGGGCACCTGTAGTGGCCCACGGTaGCCGCGCCATCCTCAAACA | + |
|
Preference number: 4 (lower is better) Translates to: TEQRSRAPARGLSMQVGTCSGPR*PRHPQT Trigger: TGTTTGAGGATGGCGCGGCCACCGTGGGCCACTACA...GGTGCCCACTTGCATGCTAAGGCCTCTCGCTGGTGCCCGTGATCTTTGTTCTGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGGGTGCGGGGCCTTCTTaGCAGAAGAGGAGACCCCAG | + |
|
Preference number: 4 (lower is better) Translates to: RRLAPFSWTTSKPQATSLGAGPS*QKRRPQ Trigger: CTGGGGTCTCCTCTTCTGTCAAGAAGGCCCCGCACC...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR GCA 90 bp | TGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTGCACTGATGCCCCAGGAGGTGATGGCAGGGTaGGGGGCCTTCTTGACAGAA | + |
|
Preference number: 4 (lower is better) Translates to: CMVNSHQQSLQAPALMPQEVMAG*GAFLTE Trigger: TTCTGTCAAGAAGGCCCCGCACCCTGCCATCACCTC...CTGGGGCATCAGTGCAGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | ACAGAACAAAGATCACGGGCACCAGCGAGAGGCCTTAGCATGCAAGTGGGCACCCATCCTCAAACAGTGTaGCCTTCCGATAGCTGGGGG | + |
|
Preference number: 4 (lower is better) Translates to: TEQRSRAPARGLSMQVGTHPQTV*PSDSWG Trigger: CCCCCAGCTATCGGAAGGCCACACTGTTTGAGGATG...GGTGCCCACTTGCATGCTAAGGCCTCTCGCTGGTGCCCGTGATCTTTGTTCTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | CGGCGCTGTTCTGGCTTTGTACACAGGGTACAAACTGTGAAAAGCTCGCTCAGGGGGGCTGGGCGAATGTaGACAGGTTGGCACAGGACA | + |
|
Preference number: 4 (lower is better) Translates to: RRCSGFVHRVQTVKSSLRGAGRM*TGWHRT Trigger: TGTCCTGTGCCAACCTGTCCACATTCGCCCAGCCCC...CCTGAGCGAGCTTTTCACAGTTTGTACCCTGTGTACAAAGCCAGAACAGCGCCG 57% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGACAGCCTGGAGCTCATaGTCGGAGCCCACCTCAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RRLAPFSWTTSKPQATSLTAWSS*SEPTSE Trigger: CTCTGAGGTGGGCTCCGACCATGAGCTCCAGGCTGT...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | CTCGAACACTTAAGTCTAGCGGTCGTTCCTTTACACAGTACTGAGAGCCAGCGCGTCAGCAGGACAGCCTaGAGCTCATGGTCGGAGCCC | + |
|
Preference number: 4 (lower is better) Translates to: LEHLSLAVVPLHSTESQRVSRTA*SSWSEP Trigger: GGGCTCCGACCATGAGCTCCAGGCTGTCCTGCTGAC...GCGCTGGCTCTCAGTACTGTGTAAAGGAACGACCGCTAGACTTAAGTGTTCGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | ACAGAACAAAGATCACGGGCACCAGCGAGAGGCCTTAGCATGCAAGTGGGCACCGTTCTTCTTCTTCGCTaGCACCGCCACGATCCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: TEQRSRAPARGLSMQVGTVLLLR*HRHDPL Trigger: AAGAGGATCGTGGCGGTGTCAGCGAAGAAGAAGAAC...GGTGCCCACTTGCATGCTAAGGCCTCTCGCTGGTGCCCGTGATCTTTGTTCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR GCA 90 bp | TGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTGCACTGATGCCCCAGACCGAGATGATGGAGTaGCGCTTCAGGTTCTTGTCC | + |
|
Preference number: 4 (lower is better) Translates to: CMVNSHQQSLQAPALMPQTEMME*RFRFLS Trigger: GGACAAGAACCTGAAGCGGCACTCCATCATCTCGGT...CTGGGGCATCAGTGCAGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | ATTCTCCTGGTTCGCATGCACGGTACCACTGTAAAAGCAACAAGAATAAAGGGGAGAAAGCTGGCTGGCTaGGGGTGCGGGCGGCTGAGC | + |
|
Preference number: 4 (lower is better) Translates to: ILLVRMHGTTVKATRIKGRKLAG*GCGRLS Trigger: GCTCAGCCGCCCGCACCCCCAGCCAGCCAGCTTTCT...CCCCTTTATTCTTGTTGCTTTTACAGTGGTACCGTGCATGCGAACCAGGAGAAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | TTCAAGAGAAACAATACCCAGAAAAGGGCTGATTCCTCCAGGGCCACCAGCCATGAGCACGGGGTCCGTTaGGGACAAGTGCTTCAGGCG | + |
|
Preference number: 4 (lower is better) Translates to: FKRNNTQKRADSSRATSHEHGVR*GQVLQA Trigger: CGCCTGAAGCACTTGTCCCCAACGGACCCCGTGCTC...ATGGCTGGTGGCCCTGGAGGAATCAGCCCTTTTCTGGGTATTGTTTCTCTTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | CTCGAACACTTAAGTCTAGCGGTCGTTCCTTTACACAGTACTGAGAGCCAGCGCAGTGTGGGTCGGCATTaGTCTGCAGCATCTTGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: LEHLSLAVVPLHSTESQRSVGRH*SAASWS Trigger: GCTCCAAGATGCTGCAGATCAATGCCGACCCACACT...GCGCTGGCTCTCAGTACTGTGTAAAGGAACGACCGCTAGACTTAAGTGTTCGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | AGCAAACCAGGGCCGTGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTTCAGGTTCTTGTCCTTaGCGTTCTTGCTGTTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: SKPGPCMVNSHQQSLQAPSGSCP*RSCCSA Trigger: TGCAGAACAGCAAGAACGCCAAGGACAAGAACCTGA...AGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCACGGCCCTGGTTTGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | TGCAAGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGCGAATGTGGACAGGTTaGCACAGGACAGCGACTTCT | + |
|
Preference number: 4 (lower is better) Translates to: CKKTSSLLLDHFQTPSHQRMWTG*HRTATS Trigger: AGAAGTCGCTGTCCTGTGCCAACCTGTCCACATTCG...CTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCTTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CAA 72 bp | GGAGAGGAAGAGGAAACCCTCCGCAGTATCTTCACATaGCTCTTTGTTCCCCAAAGCTGGAGTGAGGGCCAT | + |
|
Preference number: 4 (lower is better) Translates to: GEEEETLRSIFT*LFVPQSWSEGH Trigger: ATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCGGAGGGTTTCCTCTTCCTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGTCAGGTTCTCATTGTTaGGATGCGCGATGTTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: RRLAPFSWTTSKPQATSLSGSHC*DARCCS Trigger: AGAGCAACATCGCGCATCTCAACAATGAGAACCTGA...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR TCA 90 bp | AGAAGACTAGCTCCCTTCTCTTGGACCACTTCCAAACCCCAAGCCACCAGTCTGCAGAGAACACTTGTGTaGAATAGTGTGGGTCGGCAT | + |
|
Preference number: 4 (lower is better) Translates to: RRLAPFSWTTSKPQATSLQRTLV*NSVGRH Trigger: ATGCCGACCCACACTATTTCACACAAGTGTTCTCTG...CAGACTGGTGGCTTGGGGTTTGGAAGTGGTCCAAGAGAAGGGAGCTAGTCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CAA 72 bp | CGTGTAATTGTCCCCAAATGCATCTGTCTCAGTAGGTaGCACAGAGCAAAGCCTCTCCAGGAAGAGACGGAG | + |
|
Preference number: 4 (lower is better) Translates to: RVIVPKCICLSR*HRAKPLQEETE Trigger: CTCCGTCTCTTCCTGGAGAGGCTTTGCTCTGTGCAACCTACTGAGACAGATGCATTTGGGGACAATTACACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| CDS-3UTR CCA 90 bp | ATTCTCCTGGTTCGCATGCACGGTACCACTGTAAAAGCAACAAGAATAAAGGGGTCACTAGTGGACGCCTaGACGATGACCCGTTTGGGT | + |
|
Preference number: 4 (lower is better) Translates to: ILLVRMHGTTVKATRIKGSLVDA*TMTRLG Trigger: ACCCAAACGGGTCATCGTCCAGGCGTCCACTAGTGA...CCCCTTTATTCTTGTTGCTTTTACAGTGGTACCGTGCATGCGAACCAGGAGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CAA 72 bp | AAGAGGAAACCCTCCGCAGTATCTTCACATTGCTCTTaGTTCCCCAAAGCTGGAGTGAGGGCCATGCAAGAA | + |
|
Preference number: 4 (lower is better) Translates to: KRKPSAVSSHCS*FPKAGVRAMQE Trigger: TTCTTGCATGGCCCTCACTCCAGCTTTGGGGAACAAAGAGCAATGTGAAGATACTGCGGAGGGTTTCCTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
||
| 3UTR CAA 72 bp | GGCTTCACAATGGAACCAAGGAAGCTCTTTCCTCAGTaGCCGACCACTTCTGAAATATGCACCTTCTCAAAA | + |
|
Preference number: 4 (lower is better) Translates to: GFTMEPRKLFPQ*PTTSEICTFSK Trigger: TTTTGAGAAGGTGCATATTTCAGAAGTGGTCGGCAACTGAGGAAAGAGCTTCCTTGGTTCCATTGTGAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| 3UTR CAA 72 bp | AAAAGTGTCTTCATAGCAGCATGTCAGATAGGTTCTTaGCTCGAACACTTAAGTCTAGCGGTCGTTCCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: KSVFIAACQIGS*LEHLSLAVVPL Trigger: TAAAGGAACGACCGCTAGACTTAAGTGTTCGAGCAAAGAACCTATCTGACATGCTGCTATGAAGACACTTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS TCA 90 bp | CCAGTCTGGGAGCCAGAAAGCTGGCTGGCTGGGGGTGCGGGCGGCTaGGCCGGCGGGGGCTGGGCGAATGTGGACAGGTTGGCACAGGAC | + |
|
Preference number: 5 (lower is better) Translates to: PVWEPESWLAGGAGG*AGGGWANVDRLAQD Trigger: GTCCTGTGCCAACCTGTCCACATTCGCCCAGCCCCCGCCGGCTCAGCCGCCCGCACCCCCAGCCAGCCAGCTTTCTGGCTCCCAGACTGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS CCA 90 bp | AAGCAGGGAGCGGTCCACGCTGCGCAGCCAGAGCACGGGGTCCGTTaGGGACAAGTGCTTCAGGCGGTAGCACCGGCGGCAGAGAAACTC | + |
|
Preference number: 5 (lower is better) Translates to: KQGAVHAAQPEHGVR*GQVLQAVAPAAEKL Trigger: GAGTTTCTCTGCCGCCGGTGCTACCGCCTGAAGCACTTGTCCCCAACGGACCCCGTGCTCTGGCTGCGCAGCGTGGACCGCTCCCTGCTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS CCA 90 bp | TGGCTGGGGGTGCGGGCGGCTGAGCCGGCGGGGGCTGGGCGAATGTaGACAGGTTGGCACAGGACAGCGACTTCTTCAGGTTCTCATTGT | + |
|
Preference number: 5 (lower is better) Translates to: WLGVRAAEPAGAGRM*TGWHRTATSSGSHC Trigger: ACAATGAGAACCTGAAGAAGTCGCTGTCCTGTGCCAACCTGTCCACATTCGCCCAGCCCCCGCCGGCTCAGCCGCCCGCACCCCCAGCCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS CCA 90 bp | CCTTGGCGTTCTTGCTGTTCTGCACGGCCGTGTAGTGGCCCACGGTaGCCGCGCCATCCTCAAACAGTGTGGCCTTCCGATAGCTGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: PWRSCCSARPCSGPR*PRHPQTVWPSDSWG Trigger: CCCCCAGCTATCGGAAGGCCACACTGTTTGAGGATGGCGCGGCCACCGTGGGCCACTACACGGCCGTGCAGAACAGCAAGAACGCCAAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS-3UTR CAA 90 bp | TCTTCTCCCTACTGCCCCATGGGGCTCCAGGCGCGGTCACCGTGGCAGCAGGATGCGAATGTGGACAGGTaGGCACAGGACAGCGACTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSPYCPMGLQARSPWQQDANVDR*AQDSDF Trigger: GAAGTCGCTGTCCTGTGCCAACCTGTCCACATTCGC...ATCCTGCTGCCACGGTGACCGCGCCTGGAGCCCCATGGGGCAGTAGGGAGAAGA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS GCA 90 bp | TGGACGATGACCCGTTTGGGTGTCCCTGCAGAGGTGATGGCAGGGTaGGGGGCCTTCTTGACAGAAGAGGAGACCCCAGTCTGGGAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: WTMTRLGVPAEVMAG*GAFLTEEETPVWEP Trigger: TGGCTCCCAGACTGGGGTCTCCTCTTCTGTCAAGAAGGCCCCGCACCCTGCCATCACCTCTGCAGGGACACCCAAACGGGTCATCGTCCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | ACAGGGATAGGTGGGCGGCCACACCCTGCAGCTGGAAGTGCTCAGCTGCACAGTTTGTCCTTGGCGTTCTaGCTGTTCTGCACGGCCGTG | + |
|
Preference number: 5 (lower is better) Translates to: TGIGGRPHPAAGSAQLHSLSLAF*LFCTAV Trigger: CACGGCCGTGCAGAACAGCAAGAACGCCAAGGACAA...ACTGTGCAGCTGAGCACTTCCAGCTGCAGGGTGTGGCCGCCCACCTATCCCTGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS GCA 90 bp | GACACCGCCACGATCCTCTTCCAAGGCAGCACCGAGATGATGGAGTaGCGCTTCAGGTTCTTGTCCTTGGCGTTCTTGCTGTTCTGCACG | + |
|
Preference number: 5 (lower is better) Translates to: DTATILFQGSTEMME*RFRFLSLAFLLFCT Trigger: CGTGCAGAACAGCAAGAACGCCAAGGACAAGAACCTGAAGCGGCACTCCATCATCTCGGTGCTGCCTTGGAAGAGGATCGTGGCGGTGTC 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS-3UTR CAA 90 bp | CGGCGCTGTTCTGGCTTTGTACACAGGGTACAAACTGTGAAAAGCTCGCTCAGGAGAGCACGGGGTCCGTaGGGGACAAGTGCTTCAGGC | + |
|
Preference number: 5 (lower is better) Translates to: RRCSGFVHRVQTVKSSLRRARGP*GTSASG Trigger: GCCTGAAGCACTTGTCCCCAACGGACCCCGTGCTCT...CCTGAGCGAGCTTTTCACAGTTTGTACCCTGTGTACAAAGCCAGAACAGCGCCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS TCA 90 bp | TCTTCGCTGACACCGCCACGATCCTCTTCCAAGGCAGCACCGAGATaGTGGAGTGCCGCTTCAGGTTCTTGTCCTTGGCGTTCTTGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: SSLTPPRSSSKAAPR*WSAASGSCPWRSCC Trigger: ACAGCAAGAACGCCAAGGACAAGAACCTGAAGCGGCACTCCATCATCTCGGTGCTGCCTTGGAAGAGGATCGTGGCGGTGTCAGCGAAGA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS-3UTR CAA 90 bp | TGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTGCACTGATGCCCCAGTGCCGCTTCAGGTTCTaGTCCTTGGCGTTCTTGCTG | + |
|
Preference number: 5 (lower is better) Translates to: CMVNSHQQSLQAPALMPQCRFRF*SLAFLL Trigger: CAGCAAGAACGCCAAGGACAAGAACCTGAAGCGGCA...CTGGGGCATCAGTGCAGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS TCA 90 bp | TGGACAGGTTGGCACAGGACAGCGACTTCTTCAGGTTCTCATTGTTaGGATGCGCGATGTTGCTCTGGTAGCTGCTGTTGGGCTGCGCCT | + |
|
Preference number: 5 (lower is better) Translates to: WTGWHRTATSSGSHC*DARCCSGSCCWAAP Trigger: AGGCGCAGCCCAACAGCAGCTACCAGAGCAACATCGCGCATCTCAACAATGAGAACCTGAAGAAGTCGCTGTCCTGTGCCAACCTGTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS-3UTR CAA 90 bp | TTCAAGAGAAACAATACCCAGAAAAGGGCTGATTCCTCCAGGGCCACCAGCCATGGGTGCGGGGCCTTCTaGACAGAAGAGGAGACCCCA | + |
|
Preference number: 5 (lower is better) Translates to: FKRNNTQKRADSSRATSHGCGAF*TEEETP Trigger: TGGGGTCTCCTCTTCTGTCAAGAAGGCCCCGCACCC...ATGGCTGGTGGCCCTGGAGGAATCAGCCCTTTTCTGGGTATTGTTTCTCTTGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | TTCAAGAGAAACAATACCCAGAAAAGGGCTGATTCCTCCAGGGCCACCAGCCATTGGACGATGACCCGTTaGGGTGTCCCTGCAGAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: FKRNNTQKRADSSRATSHWTMTR*GVPAEV Trigger: CACCTCTGCAGGGACACCCAAACGGGTCATCGTCCA...ATGGCTGGTGGCCCTGGAGGAATCAGCCCTTTTCTGGGTATTGTTTCTCTTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | TGCCTCACTCACAACCTCCTGGATCCTGAGTCAGGACAGCCAGCTCCAGGAGCCTTGATCTGCAGCATCTaGGAGCTCATGAGGTTGATA | + |
|
Preference number: 5 (lower is better) Translates to: CLTHNLLDPESGQPAPGALICSI*ELMRLI Trigger: TATCAACCTCATGAGCTCCAAGATGCTGCAGATCAA...GGCTCCTGGAGCTGGCTGTCCTGACTCAGGATCCAGGAGGTTGTGAGTGAGGCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | TGCATGGTCAACAGTCATCAGCAGTCTCTGCAGGCTCCTGCACTGATGCCCCAGTTCAGGTTCTCATTGTaGAGATGCGCGATGTTGCTC | + |
|
Preference number: 5 (lower is better) Translates to: CMVNSHQQSLQAPALMPQFRFSL*RCAMLL Trigger: GAGCAACATCGCGCATCTCAACAATGAGAACCTGAA...CTGGGGCATCAGTGCAGGAGCCTGCAGAGACTGCTGATGACTGTTGACCATGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | CCGGAAAGTGAGTGGTCAGCAGCCGAAGTGGCTCTGAATGCATCTTTTGGGTTCTTGGAGCTCATGAGGTaGATAACTGAGAGGCAACGG | + |
|
Preference number: 5 (lower is better) Translates to: PESEWSAAEVALNASFGFLELMR*ITERQR Trigger: CCGTTGCCTCTCAGTTATCAACCTCATGAGCTCCAA...GAACCCAAAAGATGCATTCAGAGCCACTTCGGCTGCTGACCACTCACTTTCCGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS TCA 90 bp | GTCGGCATTGATCTGCAGCATCTTGGAGCTCATGAGGTTGATAACTaGGAGGCAACGGTCCCAAAAGGCTTCCTTACAGCTCTCTACCAG | + |
|
Preference number: 5 (lower is better) Translates to: VGIDLQHLGAHEVDN*EATVPKGFLTALYQ Trigger: CTGGTAGAGAGCTGTAAGGAAGCCTTTTGGGACCGTTGCCTCTCAGTTATCAACCTCATGAGCTCCAAGATGCTGCAGATCAATGCCGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | TTCAAGAGAAACAATACCCAGAAAAGGGCTGATTCCTCCAGGGCCACCAGCCATTTGGGCTGCGCCTTCTaGGAGTTCTTCTTCTTCGCT | + |
|
Preference number: 5 (lower is better) Translates to: FKRNNTQKRADSSRATSHLGCAF*EFFFFA Trigger: AGCGAAGAAGAAGAACTCCAAGAAGGCGCAGCCCAA...ATGGCTGGTGGCCCTGGAGGAATCAGCCCTTTTCTGGGTATTGTTTCTCTTGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | CGGCGCTGTTCTGGCTTTGTACACAGGGTACAAACTGTGAAAAGCTCGCTCAGGTTCTTCAGGTTCTCATaGTTGAGATGCGCGATGTTG | + |
|
Preference number: 5 (lower is better) Translates to: RRCSGFVHRVQTVKSSLRFFRFS*LRCAML Trigger: CAACATCGCGCATCTCAACAATGAGAACCTGAAGAA...CCTGAGCGAGCTTTTCACAGTTTGTACCCTGTGTACAAAGCCAGAACAGCGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS-3UTR CAA 90 bp | ATTCTCCTGGTTCGCATGCACGGTACCACTGTAAAAGCAACAAGAATAAAGGGGTTCAGGTTCTTGTCCTaGGCGTTCTTGCTGTTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: ILLVRMHGTTVKATRIKGFRFLS*AFLLFC Trigger: GCAGAACAGCAAGAACGCCAAGGACAAGAACCTGAA...CCCCTTTATTCTTGTTGCTTTTACAGTGGTACCGTGCATGCGAACCAGGAGAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS CCA 90 bp | ACCGCTCTCATTCTTCAAGTCAGAGAACACTTGTGTGAAATAGTGTaGGTCGGCATTGATCTGCAGCATCTTGGAGCTCATGAGGTTGAT | + |
|
Preference number: 5 (lower is better) Translates to: TALILQVREHLCEIV*VGIDLQHLGAHEVD Trigger: ATCAACCTCATGAGCTCCAAGATGCTGCAGATCAATGCCGACCCACACTATTTCACACAAGTGTTCTCTGACTTGAAGAATGAGAGCGGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS TCA 72 bp | GAGCCAGAAAGCTGGCTGGCTGGGGGTGCGGGCGGCTaGGCCGGCGGGGGCTGGGCGAATGTGGACAGGTTG | + |
|
Preference number: 6 (lower is better) Translates to: EPESWLAGGAGG*AGGGWANVDRL Trigger: CAACCTGTCCACATTCGCCCAGCCCCCGCCGGCTCAGCCGCCCGCACCCCCAGCCAGCCAGCTTTCTGGCTC 72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS CCA 72 bp | GCGGTCCACGCTGCGCAGCCAGAGCACGGGGTCCGTTaGGGACAAGTGCTTCAGGCGGTAGCACCGGCGGCA | + |
|
Preference number: 6 (lower is better) Translates to: AVHAAQPEHGVR*GQVLQAVAPAA Trigger: TGCCGCCGGTGCTACCGCCTGAAGCACTTGTCCCCAACGGACCCCGTGCTCTGGCTGCGCAGCGTGGACCGC 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS CAA 72 bp | AGCGGTCCACGCTGCGCAGCCAGAGCACGGGGTCCGTaGGGGACAAGTGCTTCAGGCGGTAGCACCGGCGGC | + |
|
Preference number: 6 (lower is better) Translates to: SGPRCAARARGP*GTSASGGSTGG Trigger: GCCGCCGGTGCTACCGCCTGAAGCACTTGTCCCCAACGGACCCCGTGCTCTGGCTGCGCAGCGTGGACCGCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS CCA 72 bp | TCTTGCTGTTCTGCACGGCCGTGTAGTGGCCCACGGTaGCCGCGCCATCCTCAAACAGTGTGGCCTTCCGAT | + |
|
Preference number: 6 (lower is better) Translates to: SCCSARPCSGPR*PRHPQTVWPSD Trigger: ATCGGAAGGCCACACTGTTTGAGGATGGCGCGGCCACCGTGGGCCACTACACGGCCGTGCAGAACAGCAAGA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS GCA 72 bp | TGGAGTGCCGCTTCAGGTTCTTGTCCTTGGCGTTCTTaGTGTTCTGCACGGCCGTGTAGTGGCCCACGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: WSAASGSCPWRS*CSARPCSGPRW Trigger: CCACCGTGGGCCACTACACGGCCGTGCAGAACAGCAAGAACGCCAAGGACAAGAACCTGAAGCGGCACTCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS CCA 72 bp | GCTGAGCCGGCGGGGGCTGGGCGAATGTGGACAGGTTaGCACAGGACAGCGACTTCTTCAGGTTCTCATTGT | + |
|
Preference number: 6 (lower is better) Translates to: AEPAGAGRMWTG*HRTATSSGSHC Trigger: ACAATGAGAACCTGAAGAAGTCGCTGTCCTGTGCCAACCTGTCCACATTCGCCCAGCCCCCGCCGGCTCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS CCA 72 bp | AGGTACAGACAGGTCAGCAGGACAGCCTGGAGCTCATaGTCGGAGCCCACCTCAGAGGAGATGACATCCCTG | + |
|
Preference number: 6 (lower is better) Translates to: RYRQVSRTAWSS*SEPTSEEMTSL Trigger: CAGGGATGTCATCTCCTCTGAGGTGGGCTCCGACCATGAGCTCCAGGCTGTCCTGCTGACCTGTCTGTACCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS CAA 72 bp | GGCAGCACCGAGATGATGGAGTGCCGCTTCAGGTTCTaGTCCTTGGCGTTCTTGCTGTTCTGCACGGCCGTG | + |
|
Preference number: 6 (lower is better) Translates to: GSTEMMECRFRF*SLAFLLFCTAV Trigger: CACGGCCGTGCAGAACAGCAAGAACGCCAAGGACAAGAACCTGAAGCGGCACTCCATCATCTCGGTGCTGCC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS TCA 72 bp | ACACCGCCACGATCCTCTTCCAAGGCAGCACCGAGATaGTGGAGTGCCGCTTCAGGTTCTTGTCCTTGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: TPPRSSSKAAPR*WSAASGSCPWR Trigger: ACGCCAAGGACAAGAACCTGAAGCGGCACTCCATCATCTCGGTGCTGCCTTGGAAGAGGATCGTGGCGGTGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS TCA 72 bp | GTTGGGCTGCGCCTTCTTGGAGTTCTTCTTCTTCGCTaGCACCGCCACGATCCTCTTCCAAGGCAGCACCGA | + |
|
Preference number: 6 (lower is better) Translates to: VGLRLLGVLLLR*HRHDPLPRQHR Trigger: TCGGTGCTGCCTTGGAAGAGGATCGTGGCGGTGTCAGCGAAGAAGAAGAACTCCAAGAAGGCGCAGCCCAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS GCA 72 bp | ACGATCCTCTTCCAAGGCAGCACCGAGATGATGGAGTaGCGCTTCAGGTTCTTGTCCTTGGCGTTCTTGCTG | + |
|
Preference number: 6 (lower is better) Translates to: TILFQGSTEMME*RFRFLSLAFLL Trigger: CAGCAAGAACGCCAAGGACAAGAACCTGAAGCGGCACTCCATCATCTCGGTGCTGCCTTGGAAGAGGATCGT 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS TCA 72 bp | TGGCACAGGACAGCGACTTCTTCAGGTTCTCATTGTTaGGATGCGCGATGTTGCTCTGGTAGCTGCTGTTGG | + |
|
Preference number: 6 (lower is better) Translates to: WHRTATSSGSHC*DARCCSGSCCW Trigger: CCAACAGCAGCTACCAGAGCAACATCGCGCATCTCAACAATGAGAACCTGAAGAAGTCGCTGTCCTGTGCCA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000053413.12 ENSMUST00000147694.2 |
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| CDS CAA 72 bp | CTCCTGACCGCTCTCATTCTTCAAGTCAGAGAACACTaGTGTGAAATAGTGTGGGTCGGCATTGATCTGCAG | + |
|
Preference number: 6 (lower is better) Translates to: LLTALILQVREH*CEIVWVGIDLQ Trigger: CTGCAGATCAATGCCGACCCACACTATTTCACACAAGTGTTCTCTGACTTGAAGAATGAGAGCGGTCAGGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS CAA 90 bp | CTTCTTGTCCTCCTGACCGCTCTCATTCTTCAAGTCAGAGAACACTaGTGTGAAATAGTGTGGGTCGGCATTGATCTGCAGCATCTTGGA | + |
|
Preference number: 6 (lower is better) Translates to: LLVLLTALILQVREH*CEIVWVGIDLQHLG Trigger: TCCAAGATGCTGCAGATCAATGCCGACCCACACTATTTCACACAAGTGTTCTCTGACTTGAAGAATGAGAGCGGTCAGGAGGACAAGAAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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| CDS CCA 72 bp | ATTCTTCAAGTCAGAGAACACTTGTGTGAAATAGTGTaGGTCGGCATTGATCTGCAGCATCTTGGAGCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: ILQVREHLCEIV*VGIDLQHLGAH Trigger: ATGAGCTCCAAGATGCTGCAGATCAATGCCGACCCACACTATTTCACACAAGTGTTCTCTGACTTGAAGAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053413.12 |
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