Pregenerated sensors for CDK5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028969Ensembl transcript IDs: ENSMUST00000030814.11, ENSMUST00000198990.2
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAGCCGCGGGCCAGGGTAACTCTGCCCTGGCTGGCCCAGCACAGCTaGCGCTCAGCATCCCACACCCGACTCTTCCACCCTCCTGGGAGG | + |
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Preference number: 1 (lower is better) Translates to: KPRARVTLPWLAQHS*RSASHTRLFHPPGR Trigger: CCTCCCAGGAGGGTGGAAGAGTCGGGTGTGGGATGCTGAGCGCCAGCTGTGCTGGGCCAGCCAGGGCAGAGTTACCCTGGCCCGCGGCTT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 90 bp | AGTCCACGGAGGGAGGGAAAGCCGCGGGCCAGGGTAACTCTGCCCTaGCTGGCCCAGCACAGCTGGCGCTCAGCATCCCACACCCGACTC | + |
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Preference number: 1 (lower is better) Translates to: SPRREGKPRARVTLP*LAQHSWRSASHTRL Trigger: GAGTCGGGTGTGGGATGCTGAGCGCCAGCTGTGCTGGGCCAGCCAGGGCAGAGTTACCCTGGCCCGCGGCTTTCCCTCCCTCCGTGGACT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 90 bp | CGCCTTTCCAACCTCTCCATAGGAGCTGACAACCTGCTAAGACAGTaGGCCCAAGAGAGCCCTCCCTTCCCCTTCCTGTCAAGAGGGCAC | + |
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Preference number: 1 (lower is better) Translates to: RLSNLSIGADNLLRQ*AQESPPFPFLSRGH Trigger: GTGCCCTCTTGACAGGAAGGGGAAGGGAGGGCTCTCTTGGGCCCACTGTCTTAGCAGGTTGTCAGCTCCTATGGAGAGGTTGGAAAGGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 90 bp | AGGAACTGGGAAGGGCTGTGCTTATGGAAGAGACCCACACAGCTCTaGATCTCTTCTGCCCCAGCTGACAACTCCAAGTGTGAGAAGACA | + |
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Preference number: 1 (lower is better) Translates to: RNWEGLCLWKRPTQL*ISSAPADNSKCEKT Trigger: TGTCTTCTCACACTTGGAGTTGTCAGCTGGGGCAGAAGAGATCCAGAGCTGTGTGGGTCTCTTCCATAAGCACAGCCCTTCCCAGTTCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR TCA 90 bp | GAGGTTCTAACTAGCTCAGCGAGAAGGTGGAAGTGGCAGGTTACATaGGAACTAGTCCATGTGCAAGAACACAAACTGGTGTCTCGCCTT | + |
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Preference number: 1 (lower is better) Translates to: EVLTSSARRWKWQVT*ELVHVQEHKLVSRL Trigger: AAGGCGAGACACCAGTTTGTGTTCTTGCACATGGACTAGTTCTCATGTAACCTGCCACTTCCACCTTCTCGCTGAGCTAGTTAGAACCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR TCA 90 bp | CTACCAAAATCTAAGAAGGTAGTCTCTCCATGCCCAGAGCTTAGGTaGCGGCCCATAGTGGGCATGGTCAGTAGGTATTCATTGCACCAA | + |
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Preference number: 1 (lower is better) Translates to: LPKSKKVVSPCPELR*RPIVGMVSRYSLHQ Trigger: TTGGTGCAATGAATACCTACTGACCATGCCCACTATGGGCCGTCACCTAAGCTCTGGGCATGGAGAGACTACCTTCTTAGATTTTGGTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGGCCAGGCCCCAGCCTaGCCACTGGGGTTCAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLGQAPA*PLGFRE Trigger: CTCTCTGAACCCCAGTGGCCAGGCTGGGGCCTGGCC...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CCA 90 bp | CTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGAACCTGCTAAGACAGTaGGCCCAAGAGAGCCCTCCC | + |
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Preference number: 2 (lower is better) Translates to: LPSPHCPCSTASGSLVDWNLLRQ*AQESPP Trigger: GGGAGGGCTCTCTTGGGCCCACTGTCTTAGCAGGTT...CCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CCA 90 bp | CTCTATATAGGATGCAGAGCTAGAGAGGCCTGGCCCATTCTCCCCTTCTGGCAACTGGCCCAGCACAGCTaGCGCTCAGCATCCCACACC | + |
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Preference number: 2 (lower is better) Translates to: LYIGCRAREAWPILPFWQLAQHS*RSASHT Trigger: GGTGTGGGATGCTGAGCGCCAGCTGTGCTGGGCCAG...TTGCCAGAAGGGGAGAATGGGCCAGGCCTCTCTAGCTCTGCATCCTATATAGAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CCA 90 bp | TGGCAAAGACTCAGCTTTGCACTCAGGCATCCTACCTCAGGACTGTATCTGGCCAGGGTAACTCTGCCCTaGCTGGCCCAGCACAGCTGG | + |
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Preference number: 2 (lower is better) Translates to: WQRLSFALRHPTSGLYLARVTLP*LAQHSW Trigger: CCAGCTGTGCTGGGCCAGCCAGGGCAGAGTTACCCT...GGCCAGATACAGTCCTGAGGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CAA 90 bp | TCACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTaGGTAGATTGGAATGCAGGCCTATACACTAGGCTTACCTCCTAC | + |
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Preference number: 2 (lower is better) Translates to: SLPSPHCPCSTASGS*VDWNAGLYTRLTSY Trigger: GTAGGAGGTAAGCCTAGTGTATAGGCCTGCATTCCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR TCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGAGGATTATGTAAGCTaGGTGTGGAGACAGGACTGC | + |
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Preference number: 2 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLEDYVS*VWRQDC Trigger: GCAGTCCTGTCTCCACACTCAGCTTACATAATCCTC...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR GCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGCAAAGACTCAGCTTTaGACTCAGGCATCCTACCTC | + |
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Preference number: 2 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLAKTQL*TQASYL Trigger: GAGGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGC...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGCCCATTCTCCCCTTCTaGCAAAGACTCAGCTTTGCA | + |
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Preference number: 2 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLPILPF*QRLSFA Trigger: TGCAAAGCTGAGTCTTTGCCAGAAGGGGAGAATGGG...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CAA 90 bp | GGTTTTCCAGATTACCTTGAACTCACTCCCAAGCCCACACTGCCCTaGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGAATGCAGGCCT | + |
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Preference number: 2 (lower is better) Translates to: GFPDYLELTPKPTLP*QHCLGLLGRLECRP Trigger: AGGCCTGCATTCCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTCAAGGTAATCTGGAAAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR TCA 90 bp | CTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGAAGTGGCAGGTTACATaGGAACTAGTCCATGTGCAA | + |
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Preference number: 2 (lower is better) Translates to: LPSPHCPCSTASGSLVDWKWQVT*ELVHVQ Trigger: TTGCACATGGACTAGTTCTCATGTAACCTGCCACTT...CCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR GCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGTGTGGAGACAGGACTaGCATGACACAATCAAAAGA | + |
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Preference number: 2 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLVWRQD*HDTIKR Trigger: TCTTTTGATTGTGTCATGGCAGTCCTGTCTCCACAC...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CCA 90 bp | CTAGGTTTTCCAGATTACCTTGAACTCACTCCCAAGCCCACACTGCCCTTGCAGAGACCCACACAGCTCTaGATCTCTTCTGCCCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: LGFPDYLELTPKPTLPLQRPTQL*ISSAPA Trigger: AGCTGGGGCAGAAGAGATCCAGAGCTGTGTGGGTCT...CTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTCAAGGTAATCTGGAAAACCTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CCA 90 bp | GCAGGTTACATGAGAACTAGTCCATGTGCAAGAACACAAACTGGTGTCTCGCCTTCAAGAGGGCACTCCTaGAGTTTCGCCTCAGCTCCA | + |
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Preference number: 2 (lower is better) Translates to: AGYMRTSPCARTQTGVSPSRGHS*SFASAP Trigger: TGGAGCTGAGGCGAAACTCCAGGAGTGCCCTCTTGA...AGGCGAGACACCAGTTTGTGTTCTTGCACATGGACTAGTTCTCATGTAACCTGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | AGGGAGGGAAAGCCGCGGGCCAGGGTAACTCTGCCCTaGCTGGCCCAGCACAGCTGGCGCTCAGCATCCCAC | + |
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Preference number: 3 (lower is better) Translates to: REGKPRARVTLP*LAQHSWRSASH Trigger: GTGGGATGCTGAGCGCCAGCTGTGCTGGGCCAGCCAGGGCAGAGTTACCCTGGCCCGCGGCTTTCCCTCCCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR GCA 72 bp | AGTAGCTCAGTGCACAAGCTGTGGGCCACATCACATTaGAGGAGTCCCCAGTCACCCTCCAGAGCCACCCCA | + |
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Preference number: 3 (lower is better) Translates to: SSSVHKLWATSH*RSPQSPSRATP Trigger: TGGGGTGGCTCTGGAGGGTGACTGGGGACTCCTGCAATGTGATGTGGCCCACAGCTTGTGCACTGAGCTACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR GCA 72 bp | GAACTCACTCCCAAGCCCACACTGCCCTTGCAGCACTaGCTCGGGCTCCTTGGTAGATTGGAATGCAGGCCT | + |
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Preference number: 3 (lower is better) Translates to: ELTPKPTLPLQH*LGLLGRLECRP Trigger: AGGCCTGCATTCCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | GATAGAGCAGACGTGAGTAGCTCAGTGCACAAGCTGTaGGCCACATCACATTGCAGGAGTCCCCAGTCACCC | + |
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Preference number: 3 (lower is better) Translates to: DRADVSSSVHKL*ATSHCRSPQSP Trigger: GGGTGACTGGGGACTCCTGCAATGTGATGTGGCCCACAGCTTGTGCACTGAGCTACTCACGTCTGCTCTATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | TGCAGAGCTAGAGAGGCCTGGCCCATTCTCCCCTTCTaGCAAAGACTCAGCTTTGCACTCAGGCATCCTACC | + |
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Preference number: 3 (lower is better) Translates to: CRAREAWPILPF*QRLSFALRHPT Trigger: GGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGCCAGAAGGGGAGAATGGGCCAGGCCTCTCTAGCTCTGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | AACCTCTCCATAGGAGCTGACAACCTGCTAAGACAGTaGGCCCAAGAGAGCCCTCCCTTCCCCTTCCTGTCA | + |
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Preference number: 3 (lower is better) Translates to: NLSIGADNLLRQ*AQESPPFPFLS Trigger: TGACAGGAAGGGGAAGGGAGGGCTCTCTTGGGCCCACTGTCTTAGCAGGTTGTCAGCTCCTATGGAGAGGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR GCA 72 bp | CTGGCCCATTCTCCCCTTCTGGCAAAGACTCAGCTTTaGACTCAGGCATCCTACCTCAGGACTGTATCTGGC | + |
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Preference number: 3 (lower is better) Translates to: LAHSPLLAKTQL*TQASYLRTVSG Trigger: GCCAGATACAGTCCTGAGGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGCCAGAAGGGGAGAATGGGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR GCA 72 bp | TTCCAGATTACCTTGAACTCACTCCCAAGCCCACACTaGCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGAT | + |
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Preference number: 3 (lower is better) Translates to: FQITLNSLPSPH*PCSTASGSLVD Trigger: ATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTCAAGGTAATCTGGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | TGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTaGAATGCAGGCCTATACACTAGGCTTACCTCCTAC | + |
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Preference number: 3 (lower is better) Translates to: CPCSTASGSLVD*NAGLYTRLTSY Trigger: GTAGGAGGTAAGCCTAGTGTATAGGCCTGCATTCCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR-3UTR CAA 90 bp | CTAGGTTTTCCAGATTACCTTGAACTCACTCCCAAGCCCACACTGCCCTTGCAGACTGCCTCGGGCTCCTaGGTAGATTGGAATGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: LGFPDYLELTPKPTLPLQTASGS*VDWNAG Trigger: GCCTGCATTCCAATCTACCAAGGAGCCCGAGGCAGT...CTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTCAAGGTAATCTGGAAAACCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR GCA 72 bp | ATTACCTTGAACTCACTCCCAAGCCCACACTGCCCTTaGAGCACTGCCTCGGGCTCCTTGGTAGATTGGAAT | + |
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Preference number: 3 (lower is better) Translates to: ITLNSLPSPHCP*STASGSLVDWN Trigger: ATTCCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTCAAGGTAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | GAAGGGCTGTGCTTATGGAAGAGACCCACACAGCTCTaGATCTCTTCTGCCCCAGCTGACAACTCCAAGTGT | + |
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Preference number: 3 (lower is better) Translates to: EGLCLWKRPTQL*ISSAPADNSKC Trigger: ACACTTGGAGTTGTCAGCTGGGGCAGAAGAGATCCAGAGCTGTGTGGGTCTCTTCCATAAGCACAGCCCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | GGAAGGCTCTATATAGGATGCAGAGCTAGAGAGGCCTaGCCCATTCTCCCCTTCTGGCAAAGACTCAGCTTT | + |
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Preference number: 3 (lower is better) Translates to: GRLYIGCRAREA*PILPFWQRLSF Trigger: AAAGCTGAGTCTTTGCCAGAAGGGGAGAATGGGCCAGGCCTCTCTAGCTCTGCATCCTATATAGAGCCTTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR GCA 72 bp | CCTGGAAAAGTGACAAACAGGAACTGGGAAGGGCTGTaGTTATGGAAGAGACCCACACAGCTCTGGATCTCT | + |
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Preference number: 3 (lower is better) Translates to: PGKVTNRNWEGL*LWKRPTQLWIS Trigger: AGAGATCCAGAGCTGTGTGGGTCTCTTCCATAAGCACAGCCCTTCCCAGTTCCTGTTTGTCACTTTTCCAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CCA 72 bp | AAAGTGACAAACAGGAACTGGGAAGGGCTGTGCTTATaGAAGAGACCCACACAGCTCTGGATCTCTTCTGCC | + |
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Preference number: 3 (lower is better) Translates to: KVTNRNWEGLCL*KRPTQLWISSA Trigger: GGCAGAAGAGATCCAGAGCTGTGTGGGTCTCTTCCATAAGCACAGCCCTTCCCAGTTCCTGTTTGTCACTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR TCA 72 bp | ACTAGCTCAGCGAGAAGGTGGAAGTGGCAGGTTACATaGGAACTAGTCCATGTGCAAGAACACAAACTGGTG | + |
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Preference number: 3 (lower is better) Translates to: TSSARRWKWQVT*ELVHVQEHKLV Trigger: CACCAGTTTGTGTTCTTGCACATGGACTAGTTCTCATGTAACCTGCCACTTCCACCTTCTCGCTGAGCTAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR TCA 72 bp | GGATTATGTAAGCTGAGTGTGGAGACAGGACTGCCATaGCACAATCAAAAGAACAGGGACCATTGCCTCCTA | + |
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Preference number: 3 (lower is better) Translates to: GLCKLSVETGLP*HNQKNRDHCLL Trigger: TAGGAGGCAATGGTCCCTGTTCTTTTGATTGTGTCATGGCAGTCCTGTCTCCACACTCAGCTTACATAATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR TCA 90 bp | GACAGTGGGCCCAAGAGAGCCCTCCCTTCCCCTTCCTGTCAAGAGGGCACTCCTCCCTCCCCGTGGCATTaGGCTTGGGCACGACGTTCA | + |
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Preference number: 4 (lower is better) Translates to: DSGPKRALPSPSCQEGTPPSPWH*AWARRS Trigger: TGAACGTCGTGCCCAAGCTCAATGCCACGGGGAGGG...AGGAGTGCCCTCTTGACAGGAAGGGGAAGGGAGGGCTCTCTTGGGCCCACTGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CCA 90 bp | GACAGTGGGCCCAAGAGAGCCCTCCCTTCCCCTTCCTGTCAAGAGGGCACTCCTAAAGAGGACATCCGGTaGGCGGTACCACAGCGTGAC | + |
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Preference number: 4 (lower is better) Translates to: DSGPKRALPSPSCQEGTPKEDIR*AVPQRD Trigger: GTCACGCTGTGGTACCGCCCACCGGATGTCCTCTTT...AGGAGTGCCCTCTTGACAGGAAGGGGAAGGGAGGGCTCTCTTGGGCCCACTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR GCA 90 bp | AGGAGTCCCCAGTCACCCTCCAGAGCCACCCCACCACCATATCATCAGACTGTGCCTCCTCTGCTGAGATaGGCTGCACAGGGTTACACT | + |
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Preference number: 4 (lower is better) Translates to: RSPQSPSRATPPPYHQTVPPLLR*AAQGYT Trigger: AGTGTAACCCTGTGCAGCGCATCTCAGCAGAGGAGG...CACAGTCTGATGATATGGTGGTGGGGTGGCTCTGGAGGGTGACTGGGGACTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGTAGGGCTTATAGTCTaGCAGCTTGGTCATGGCAGG | + |
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Preference number: 4 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLVGLIV*QLGHGR Trigger: CCTGCCATGACCAAGCTGCCAGACTATAAGCCCTAC...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR TCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGCAGCTGGAAGAGGAATaGCTTCACAATCTCAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLQLEEE*LHNLRV Trigger: GACCCTGAGATTGTGAAGTCATTCCTCTTCCAGCTG...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR TCA 90 bp | TGGCAAAGACTCAGCTTTGCACTCAGGCATCCTACCTCAGGACTGTATCTGGCCCAAGGCCTCCTCTGCTaGGATGCGCTGCACAGGGTT | + |
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Preference number: 4 (lower is better) Translates to: WQRLSFALRHPTSGLYLAQGLLC*DALHRV Trigger: AACCCTGTGCAGCGCATCTCAGCAGAGGAGGCCTTG...GGCCAGATACAGTCCTGAGGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR GCA 90 bp | ACTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGAAGAGAGGTCGTCCTaGATTAGCCAGCTCTGCAAA | + |
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Preference number: 4 (lower is better) Translates to: TPKPTLPLQHCLGLLGRLEERSS*ISQLCK Trigger: TTTGCAGAGCTGGCTAATGCAGGACGACCTCTCTTC...CAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR GCA 90 bp | CTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGTCTGCTGAGATGCGCTaGACAGGGTTACACTTCAAT | + |
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Preference number: 4 (lower is better) Translates to: LPSPHCPCSTASGSLVDWSAEMR*TGLHFN Trigger: ATTGAAGTGTAACCCTGTGCAGCGCATCTCAGCAGA...CCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CAA 72 bp | AGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTaGGTAGATTGGAATGCAGGCCTATACACTAGGCTT | + |
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Preference number: 4 (lower is better) Translates to: SPHCPCSTASGS*VDWNAGLYTRL Trigger: AAGCCTAGTGTATAGGCCTGCATTCCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR GCA 90 bp | CTCCCAAGCCCACACTGCCCTTGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGGGTCCAGGTCACCATTaGAGCTGTCGAAATATTTCT | + |
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Preference number: 4 (lower is better) Translates to: LPSPHCPCSTASGSLVDWGPGHH*SCRNIS Trigger: AGAAATATTTCGACAGCTGCAATGGTGACCTGGACC...CCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CAA 72 bp | CCTGGCCCATTCTCCCCTTCTGGCAAAGACTCAGCTTaGCACTCAGGCATCCTACCTCAGGACTGTATCTGG | + |
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Preference number: 4 (lower is better) Translates to: PGPFSPSGKDSA*HSGILPQDCIW Trigger: CCAGATACAGTCCTGAGGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGCCAGAAGGGGAGAATGGGCCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| 3UTR CAA 72 bp | GATTACCTTGAACTCACTCCCAAGCCCACACTGCCCTaGCAGCACTGCCTCGGGCTCCTTGGTAGATTGGAA | + |
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Preference number: 4 (lower is better) Translates to: DYLELTPKPTLP*QHCLGLLGRLE Trigger: TTCCAATCTACCAAGGAGCCCGAGGCAGTGCTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTCAAGGTAATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR TCA 90 bp | CTCTATATAGGATGCAGAGCTAGAGAGGCCTGGCCCATTCTCCCCTTCTGGCAACGTCATCATCCAGCCTaGCACGCTTCAGAGCCACAA | + |
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Preference number: 4 (lower is better) Translates to: LYIGCRAREAWPILPFWQRHHPA*HASEPQ Trigger: TTGTGGCTCTGAAGCGTGTCAGGCTGGATGATGACG...TTGCCAGAAGGGGAGAATGGGCCAGGCCTCTCTAGCTCTGCATCCTATATAGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CCA 90 bp | GACAACCTGCTAAGACAGTGGGCCCAAGAGAGCCCTCCCTTCCCCTTCCTGTCAAGGCCTTTCAGCAGCTaGAAGAGGAATGACTTCACA | + |
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Preference number: 4 (lower is better) Translates to: DNLLRQWAQESPPFPFLSRPFSS*KRNDFT Trigger: TGTGAAGTCATTCCTCTTCCAGCTGCTGAAAGGCCT...TGACAGGAAGGGGAAGGGAGGGCTCTCTTGGGCCCACTGTCTTAGCAGGTTGTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR TCA 90 bp | GCAGGTTACATGAGAACTAGTCCATGTGCAAGAACACAAACTGGTGTCTCGCCTAGCACGTTGCGGCTGTaGCAGAATCCCAGGCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: AGYMRTSPCARTQTGVSPSTLRL*QNPRPF Trigger: GAAAGGCCTGGGATTCTGTCACAGCCGCAACGTGCT...AGGCGAGACACCAGTTTGTGTTCTTGCACATGGACTAGTTCTCATGTAACCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR GCA 90 bp | CCCAACCCCTGGAAAAGTGACAAACAGGAACTGGGAAGGGCTGTGCTTATGGAAGGTCATCCACATCATTaGCAGGGAAGAGAGGTCGTC | + |
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Preference number: 4 (lower is better) Translates to: PNPWKSDKQELGRAVLMEGHPHH*QGREVV Trigger: GACGACCTCTCTTCCCTGGCAATGATGTGGATGACC...TTCCATAAGCACAGCCCTTCCCAGTTCCTGTTTGTCACTTTTCCAGGGGTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CCA 90 bp | TTCATTGCACCAACGGTGGAGAGCTGGAACGAGGTTCTAACTAGCTCAGCGAGATGTAGCTGGGTACATTaGGTAGGGCTTATAGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: FIAPTVESWNEVLTSSARCSWVH*VGLIVW Trigger: CCAGACTATAAGCCCTACCCAATGTACCCAGCTACA...TCTCGCTGAGCTAGTTAGAACCTCGTTCCAGCTCTCCACCGTTGGTGCAATGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR TCA 90 bp | CCCAACCCCTGGAAAAGTGACAAACAGGAACTGGGAAGGGCTGTGCTTATGGAAGGACATCATGAAGCCTaGCAATGTTTTTGTGCTTCA | + |
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Preference number: 4 (lower is better) Translates to: PNPWKSDKQELGRAVLMEGHHEA*QCFCAS Trigger: TGAAGCACAAAAACATTGTCAGGCTTCATGATGTCC...TTCCATAAGCACAGCCCTTCCCAGTTCCTGTTTGTCACTTTTCCAGGGGTTGGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR TCA 90 bp | TTCATTGCACCAACGGTGGAGAGCTGGAACGAGGTTCTAACTAGCTCAGCGAGACTATGCAGGACATCATaGAGCCTGACAATGTTTTTG | + |
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Preference number: 4 (lower is better) Translates to: FIAPTVESWNEVLTSSARLCRTS*SLTMFL Trigger: CAAAAACATTGTCAGGCTTCATGATGTCCTGCATAG...TCTCGCTGAGCTAGTTAGAACCTCGTTCCAGCTCTCCACCGTTGGTGCAATGAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR GCA 90 bp | CTAGGTTTTCCAGATTACCTTGAACTCACTCCCAAGCCCACACTGCCCTTGCAGCTGACAATGTTTTTGTaGTTCAGTTCTTTGAGTAGA | + |
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Preference number: 4 (lower is better) Translates to: LGFPDYLELTPKPTLPLQLTMFL*FSSLSR Trigger: TCTACTCAAAGAACTGAAGCACAAAAACATTGTCAG...CTGCAAGGGCAGTGTGGGCTTGGGAGTGAGTTCAAGGTAATCTGGAAAACCTAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CAA 90 bp | GACAACCTGCTAAGACAGTGGGCCCAAGAGAGCCCTCCCTTCCCCTTCCTGTCATCCCTCCCCGTGGCATaGAGCTTGGGCACGACGTTC | + |
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Preference number: 5 (lower is better) Translates to: DNLLRQWAQESPPFPFLSSLPVA*SLGTTF Trigger: GAACGTCGTGCCCAAGCTCAATGCCACGGGGAGGGA...TGACAGGAAGGGGAAGGGAGGGCTCTCTTGGGCCCACTGTCTTAGCAGGTTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CAA 90 bp | TGGCAAAGACTCAGCTTTGCACTCAGGCATCCTACCTCAGGACTGTATCTGGCCCCCGGAGGGCTGAACTaGGCACACCCTCATCGTCAT | + |
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Preference number: 5 (lower is better) Translates to: WQRLSFALRHPTSGLYLAPGGLN*AHPHRH Trigger: ATGACGATGAGGGTGTGCCAAGTTCAGCCCTCCGGG...GGCCAGATACAGTCCTGAGGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CAA 90 bp | AGGAGTCCCCAGTCACCCTCCAGAGCCACCCCACCACCATATCATCAGACTGTGTGGTCATCCACATCATaGCCAGGGAAGAGAGGTCGT | + |
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Preference number: 5 (lower is better) Translates to: RSPQSPSRATPPPYHQTVWSSTS*PGKRGR Trigger: ACGACCTCTCTTCCCTGGCAATGATGTGGATGACCA...CACAGTCTGATGATATGGTGGTGGGGTGGCTCTGGAGGGTGACTGGGGACTCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CAA 90 bp | TGGCAAAGACTCAGCTTTGCACTCAGGCATCCTACCTCAGGACTGTATCTGGCCCCCGTGGCATTGAGCTaGGGCACGACGTTCACCAAG | + |
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Preference number: 5 (lower is better) Translates to: WQRLSFALRHPTSGLYLAPVALS*GTTFTK Trigger: CTTGGTGAACGTCGTGCCCAAGCTCAATGCCACGGG...GGCCAGATACAGTCCTGAGGTAGGATGCCTGAGTGCAAAGCTGAGTCTTTGCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CAA 90 bp | TGCACTCAGGCATCCTACCTCAGGACTGTATCTGGCCTTCTAGGCAGAGGAAAAGGTCATGGCAGGCCATaGTTCCTCAGTCGGTGTCCC | + |
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Preference number: 5 (lower is better) Translates to: CTQASYLRTVSGLLGRGKGHGRP*FLSRCP Trigger: GGGACACCGACTGAGGAACAATGGCCTGCCATGACC...TTTTCCTCTGCCTAGAAGGCCAGATACAGTCCTGAGGTAGGATGCCTGAGTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS-3UTR CAA 90 bp | GCAGGAGTCCCCAGTCACCCTCCAGAGCCACCCCACCACCATATCATCAGACTGAGCCTGACAATGTTTTaGTGCTTCAGTTCTTTGAGT | + |
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Preference number: 5 (lower is better) Translates to: AGVPSHPPEPPHHHIIRLSLTMF*CFSSLS Trigger: ACTCAAAGAACTGAAGCACAAAAACATTGTCAGGCT...CAGTCTGATGATATGGTGGTGGGGTGGCTCTGGAGGGTGACTGGGGACTCCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030814.11 |
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| CDS CAA 72 bp | AGGTTCTGCAACAGGTCCCTCCCCGTGGCATTGAGCTaGGGCACGACGTTCACCAAGGATGTTGTAGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: RFCNRSLPVALS*GTTFTKDVVAG Trigger: CCCAGCTACAACATCCTTGGTGAACGTCGTGCCCAAGCTCAATGCCACGGGGAGGGACCTGTTGCAGAACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000030814.11 ENSMUST00000198990.2 |
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