Pregenerated sensors for CDK4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006728Ensembl transcript IDs: ENSMUST00000006911.12, ENSMUST00000120226.8, ENSMUST00000125682.2, ENSMUST00000133115.8, ENSMUST00000142558.8
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GGGGCAAAGGCTCCTCGAGGTAGAGATACCTCTCGAGGCCAGTCGTCTTCTGGACCGACGGAACATCTCTaGAAAGATACAGCCAACGCT | + |
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Preference number: 2 (lower is better) Translates to: GAKAPRGRDTSRGQSSSGPTEHL*KDTANA Trigger: AGCGTTGGCTGTATCTTTGCAGAGATGTTCCGTCGG...TCCAGAAGACGACTGGCCTCGAGAGGTATCTCTACCTCGAGGAGCCTTTGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| 3UTR-3UTR CCA 90 bp | CCTCTGGGGGCAAAGGCTCCTCGAGGTAGAGATACCTCTCGAGGCCAGTCGTCTAAGATTTTCCCCAACTaGTCGGCTTCAGAGTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: PLGAKAPRGRDTSRGQSSKIFPN*SASEFP Trigger: TGGAAACTCTGAAGCCGACCAGTTGGGGAAAATCTT...AGACGACTGGCCTCGAGAGGTATCTCTACCTCGAGGAGCCTTTGCCCCCAGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| 3UTR CAA 90 bp | AACCCAGGGCCTCACAAGTGCTCGGCAAGCATTTCTACCAATCAGTaGTCATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACCAG | + |
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Preference number: 2 (lower is better) Translates to: NPGPHKCSASISTNQ*SFPAPPTVSSKQDQ Trigger: CTGGTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAGAAATGCTTGCCGAGCACTTGTGAGGCCCTGGGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR GCA 90 bp | ATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAAGAGCTGGACTGCCTGGGGGGAAACAGAGGCTaGCGCTTCAGCGAGGGTTTC | + |
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Preference number: 2 (lower is better) Translates to: IQRKHFSLILPAKELDCLGGNRG*RFSEGF Trigger: GAAACCCTCGCTGAAGCGGCAGCCTCTGTTTCCCCC...CAGGCAGTCCAGCTCTTTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAAT 52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR CCA 90 bp | ATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACCAGTGAACTTAGAAACTGATTCTCCACAGCCTTaGGGGGAAACAGAGGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: IPSPTYSLIKAGPVNLETDSPQP*GETEAA Trigger: GGCAGCCTCTGTTTCCCCCCAAGGCTGTGGAGAATC...AGTTTCTAAGTTCACTGGTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR CCA 90 bp | GCAAGCATTTCTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCATGCCAGCCAAAGAGCTaGACTGCCTGCCTAGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: ASISTNQLSFPAPPTVSSCQPKS*TACLGP Trigger: AGGACCTAGGCAGGCAGTCCAGCTCTTTGGCTGGCA...TGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAGAAATGCTTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR GCA 90 bp | CAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAAGGTCAGCATTTCCAGCATGTCCACGGGTGTTaGGTATGTAGACTGCAGAAG | + |
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Preference number: 2 (lower is better) Translates to: QGSEGRDSLMWVKGQHFQHVHGC*VCRLQK Trigger: CTTCTGCAGTCTACATACGCAACACCCGTGGACATG...CTGGAAATGCTGACCTTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| 3UTR-3UTR CCA 90 bp | AGTGCTGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAATGGGAACACGATTATaGATGAGGGGAGGTAGGCCT | + |
|
Preference number: 2 (lower is better) Translates to: SAGIKGVHHHCLALPSLQMGTRL*MRGGRP Trigger: AGGCCTACCTCCCCTCATCCATAATCGTGTTCCCAT...TTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAGCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR CCA 90 bp | AGGTCCCTTACCTCACCCCCAAGAACTGGTGGTTGGACTTATGTCTGTTTTGATTTTCTCCACCAAGACTaGGAAAGGCAGCCCCTCTTC | + |
|
Preference number: 2 (lower is better) Translates to: RSLTSPPRTGGWTYVCFDFLHQD*ERQPLF Trigger: GAAGAGGGGCTGCCTTTCCCAGTCTTGGTGGAGAAA...ATCAAAACAGACATAAGTCCAACCACCAGTTCTTGGGGGTGAGGTAAGGGACCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR CCA 90 bp | CTGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACCCCCAAGTCTCCCAGTaGCAAAGCCAATTGGAAAAA | + |
|
Preference number: 2 (lower is better) Translates to: LGLKAYTTTAWPCHLYKHPQVSQ*QSQLEK Trigger: TTTTTCCAATTGGCTTTGCCACTGGGAGACTTGGGG...GTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR GCA 90 bp | CTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAAGGTCAGCATTTCGTGAACAATGCAGTTTaGATGAAGAAAATCCAGGCC | + |
|
Preference number: 2 (lower is better) Translates to: LQGSEGRDSLMWVKGQHFVNNAV*MKKIQA Trigger: GGCCTGGATTTTCTTCATGCAAACTGCATTGTTCAC...GAAATGCTGACCTTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| 3UTR CAA 90 bp | AGTCTCATCAAAGCAGGACCAGTGAACTTAGAAACTAAAGCCATTTaGACCGAATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGC | + |
|
Preference number: 2 (lower is better) Translates to: SLIKAGPVNLETKAI*TEYSKKAFLSDLAS Trigger: GCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTCGGTCAAAATGGCTTTAGTTTCTAAGTTCACTGGTCCTGCTTTGATGAGACT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR GCA 72 bp | CTCCCAAGTGCTGGGATTAAAGGCGTACACCACCACTaGCTGGCCTTGCCATCTTTACAAACACCTAGGGGT | + |
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Preference number: 3 (lower is better) Translates to: LPSAGIKGVHHH*LALPSLQTPRG Trigger: ACCCCTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAGCACTTGGGAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR CCA 72 bp | GTTGGACTTATGTCTGTTTTGATGGGAACACGATTATaGATGAGGGGAGGTAGGCCTCGGGCCCTAGGAGGG | + |
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Preference number: 3 (lower is better) Translates to: VGLMSVLMGTRL*MRGGRPRALGG Trigger: CCCTCCTAGGGCCCGAGGCCTACCTCCCCTCATCCATAATCGTGTTCCCATCAAAACAGACATAAGTCCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR CAA 90 bp | CTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACCCATTTCTCTCTGATCTaGCCAGCCAAAGAGCTGGAC | + |
|
Preference number: 3 (lower is better) Translates to: LPISCHSQPHLQSHQSRTHFSLI*PAKELD Trigger: GTCCAGCTCTTTGGCTGGCAAGATCAGAGAGAAATG...GGTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR-3UTR CAA 90 bp | AGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAAGGTCAGCATTTCCAGTGGTGAACAATGCAGTTaGCATGAAGAAAATCCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: RARKAEIRLCGLKVSISSGEQCS*HEENPG Trigger: GCCTGGATTTTCTTCATGCAAACTGCATTGTTCACC...ACTGGAAATGCTGACCTTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| 3UTR CCA 72 bp | AAGAGGTCCCTTACCTCACCCCCAAGAACTGGTGGTTaGACTTATGTCTGTTTTGATGGGAACACGATTATG | + |
|
Preference number: 3 (lower is better) Translates to: KRSLTSPPRTGG*TYVCFDGNTIM Trigger: CATAATCGTGTTCCCATCAAAACAGACATAAGTCCAACCACCAGTTCTTGGGGGTGAGGTAAGGGACCTCTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR TCA 72 bp | CATTTTGACCGAATATTCAAAGAAAGCATTTCTCTCTaGTCTTGCCAGCCAAAGAGCTGGACTGCCTGCCTA | + |
|
Preference number: 3 (lower is better) Translates to: HFDRIFKESISL*SCQPKSWTACL Trigger: TAGGCAGGCAGTCCAGCTCTTTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTCGGTCAAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR GCA 90 bp | CAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAATCTGGCACCACTGACTaGACTGGCCGAGGCCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: QVGVLQGSEGRDSLMWVKSGTTD*TGRGPL Trigger: CAGAGGGCCTCGGCCAGTGCAGTCAGTGGTGCCAGA...TTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120226.8 |
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| CDS-3UTR TCA 90 bp | GTGCAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTGAACTCTCACACTCTTaGGGGCCACAAAGTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: VQVGVLQGSEGRDSLMWVELSHS*GPQSGH Trigger: GTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTTC...AACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTGCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120226.8 ENSMUST00000142558.8 |
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| CDS-3UTR GCA 90 bp | TCTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACTCTGGCACCACTGACTaGACTGGCCGAGGCCCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: STNQLSFPAPPTVSSKQDSGTTD*TGRGPL Trigger: CAGAGGGCCTCGGCCAGTGCAGTCAGTGGTGCCAGA...GTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| 3UTR CAA 72 bp | GCTGGGATTAAAGGCGTACACCACCACTGCCTGGCCTaGCCATCTTTACAAACACCTAGGGGTGGCCCTATG | + |
|
Preference number: 4 (lower is better) Translates to: AGIKGVHHHCLA*PSLQTPRGGPM Trigger: CATAGGGCCACCCCTAGGTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR GCA 90 bp | CAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAAAAGGCCCCCTCCAGCTaGTCCTCCATTAGGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: QVGVLQGSEGRDSLMWVKKAPSS*SSIRNS Trigger: AGAGTTCCTAATGGAGGAGCAGCTGGAGGGGGCCTT...TTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000120226.8 ENSMUST00000142558.8 |
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| CDS-3UTR GCA 90 bp | CTGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAACACCAGGCCCGGTGGAGGTaGTTTGTCCAGGTATGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LGLKAYTTTAWPCHLYKHQARWR*FVQVCP Trigger: AGGACATACCTGGACAAAGCACCTCCACCGGGCCTG...GTGTTTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | GTGCAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAGGCCAGTCGTCTTCTaGAGGCAATCCAATGAGATC | + |
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Preference number: 4 (lower is better) Translates to: VQVGVLQGSEGRDSLMWVRPVVF*RQSNEI Trigger: GATCTCATTGGATTGCCTCCAGAAGACGACTGGCCT...AACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120226.8 |
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| CDS-3UTR TCA 90 bp | CAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAAGGTCAGCATTTCCAGGAACTCTCACACTCTTaGGGGCCACAAAGTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: QGSEGRDSLMWVKGQHFQELSHS*GPQSGH Trigger: GTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTTC...CTGGAAATGCTGACCTTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| CDS-3UTR GCA 90 bp | AGTGCTGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAAAGGCCCCCTCCAGCTaGTCCTCCATTAGGAACTCT | + |
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Preference number: 4 (lower is better) Translates to: SAGIKGVHHHCLALPSLQKAPSS*SSIRNS Trigger: AGAGTTCCTAATGGAGGAGCAGCTGGAGGGGGCCTT...TTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAGCACT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | CAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAAACAAAGTGGCCACTGTaGGGATCTCGGGCTTTGTAC | + |
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Preference number: 4 (lower is better) Translates to: QVGVLQGSEGRDSLMWVKTKWPL*GSRALY Trigger: GTACAAAGCCCGAGATCCCCACAGTGGCCACTTTGT...TTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000120226.8 ENSMUST00000142558.8 |
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| CDS-3UTR TCA 90 bp | GTGCAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTCTGGAGGCAATCCAATaGGATCAAAGATTTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: VQVGVLQGSEGRDSLMWVLEAIQ*DQRFSP Trigger: TGGGGAAAATCTTTGATCTCATTGGATTGCCTCCAG...AACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000120226.8 |
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| CDS-3UTR GCA 90 bp | GTGCTCGGCAAGCATTTCTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCCGACGGAACATCTCTaGAAAGATACAGCCAACGCT | + |
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Preference number: 4 (lower is better) Translates to: VLGKHFYQSVVIPSPTYSPTEHL*KDTANA Trigger: AGCGTTGGCTGTATCTTTGCAGAGATGTTCCGTCGG...ACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAGAAATGCTTGCCGAGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | AGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTTAAAGGTCAGCATTTCCAGTACAAAGTGGCCACTGTaGGGATCTCGGGCTTTGTAC | + |
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Preference number: 4 (lower is better) Translates to: RARKAEIRLCGLKVSISSTKWPL*GSRALY Trigger: GTACAAAGCCCGAGATCCCCACAGTGGCCACTTTGT...ACTGGAAATGCTGACCTTTAACCCACATAAGCGAATCTCTGCCTTCCGAGCCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| CDS-3UTR TCA 90 bp | CCTTGGCTTCAAGGACAGAGTCAGAACACCAAGAGAAAACCAGTTATAACCCAGGAACTCTCACACTCTTaGGGGCCACAAAGTGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: PWLQGQSQNTKRKPVITQELSHS*GPQSGH Trigger: GTGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTTC...CTGGGTTATAACTGGTTTTCTCTTGGTGTTCTGACTCTGTCCTTGAAGCCAAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR GCA 90 bp | AGTGCTGGGATTAAAGGCGTACACCACCACTGCCTGGCCTTGCCATCTTTACAAAGGTCCTGGTCTATATaGTCAAACACTAGGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: SAGIKGVHHHCLALPSLQRSWSI*SNTRVT Trigger: GGTCACCCTAGTGTTTGAGCATATAGACCAGGACCT...TTGTAAAGATGGCAAGGCCAGGCAGTGGTGGTGTACGCCTTTAATCCCAGCACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | TTCTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGAACAAAGTGGCCACTGTaGGGATCTCGGGCTTTGTAC | + |
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Preference number: 4 (lower is better) Translates to: FYQSVVIPSPTYSLIKAGTKWPL*GSRALY Trigger: GTACAAAGCCCGAGATCCCCACAGTGGCCACTTTGT...TCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | ATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACCAGTGAACTTAGAAACTAGGCCAGTCGTCTTCTaGAGGCAATCCAATGAGATC | + |
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Preference number: 4 (lower is better) Translates to: IPSPTYSLIKAGPVNLETRPVVF*RQSNEI Trigger: GATCTCATTGGATTGCCTCCAGAAGACGACTGGCCT...AGTTTCTAAGTTCACTGGTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR GCA 90 bp | TCTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACGTGAACAATGCAGTTTaGATGAAGAAAATCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: STNQLSFPAPPTVSSKQDVNNAV*MKKIQA Trigger: GGCCTGGATTTTCTTCATGCAAACTGCATTGTTCAC...GTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR GCA 90 bp | GCAAGCATTTCTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCAGTTGCGTATGTAGACTaGAGAAGAACTTCAGGAGCT | + |
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Preference number: 4 (lower is better) Translates to: ASISTNQLSFPAPPTVSSVAYVD*RRTSGA Trigger: AGCTCCTGAAGTTCTTCTGCAGTCTACATACGCAAC...TGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAGAAATGCTTGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR TCA 90 bp | ATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAAGAGCTGGACTGCCTGCTGGAGGCAATCCAATaGGATCAAAGATTTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: IQRKHFSLILPAKELDCLLEAIQ*DQRFSP Trigger: TGGGGAAAATCTTTGATCTCATTGGATTGCCTCCAG...CAGGCAGTCCAGCTCTTTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR GCA 90 bp | GCCATTTTGACCGAATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAACATGTCCACGGGTGTTaGGTATGTAGACTGCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: AILTEYSKKAFLSDLASQHVHGC*VCRLQK Trigger: CTTCTGCAGTCTACATACGCAACACCCGTGGACATG...TTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTCGGTCAAAATGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | GAATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAAGAGCTGGACTGAAGATTTTCCCCAACTaGTCGGCTTCAGAGTTTCCA | + |
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Preference number: 4 (lower is better) Translates to: EYSKKAFLSDLASQRAGLKIFPN*SASEFP Trigger: TGGAAACTCTGAAGCCGACCAGTTGGGGAAAATCTT...CAGTCCAGCTCTTTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | CCAAGAACTGGTGGTTGGACTTATGTCTGTTTTGATGGGAACACGATTATGGATTATGTCCTCAGGTCCTaGTCTATATGCTCAAACACT | + |
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Preference number: 4 (lower is better) Translates to: PRTGGWTYVCFDGNTIMDYVLRS*SICSNT Trigger: AGTGTTTGAGCATATAGACCAGGACCTGAGGACATA...ATCCATAATCGTGTTCCCATCAAAACAGACATAAGTCCAACCACCAGTTCTTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CCA 90 bp | CCAAGAACTGGTGGTTGGACTTATGTCTGTTTTGATGGGAACACGATTATGGATAGAGATTCGCTTATGTaGGTTAAAGGTCAGCATTTC | + |
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Preference number: 4 (lower is better) Translates to: PRTGGWTYVCFDGNTIMDRDSLM*VKGQHF Trigger: GAAATGCTGACCTTTAACCCACATAAGCGAATCTCT...ATCCATAATCGTGTTCCCATCAAAACAGACATAAGTCCAACCACCAGTTCTTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CAA 90 bp | CCTTGTGCAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGAACTCTCACACTCTaGAGGGCCACAAAGTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: PCAGRSAAGLGRQRFAYVGTLTL*RATKWP Trigger: TGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTTCC...CACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTGCACAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000120226.8 ENSMUST00000142558.8 |
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| CDS-3UTR CAA 90 bp | AGGCTCCTCGAGGTAGAGATACCTCTCGAGGCCAGTCGTCTTCTGGAGGCAATCGGAACTCTCACACTCTaGAGGGCCACAAAGTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: RLLEVEIPLEASRLLEAIGTLTL*RATKWP Trigger: TGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTTCC...GATTGCCTCCAGAAGACGACTGGCCTCGAGAGGTATCTCTACCTCGAGGAGCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000142558.8 |
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| CDS CCA 90 bp | GGCAGGCCCGGTGGAGGTGCTTTGTCCAGGTATGTCCTCAGGTCCTaGTCTATATGCTCAAACACTAGGGTGACCTTGATGTCCCGATCA | + |
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Preference number: 5 (lower is better) Translates to: GRPGGGALSRYVLRS*SICSNTRVTLMSRS Trigger: TGATCGGGACATCAAGGTCACCCTAGTGTTTGAGCATATAGACCAGGACCTGAGGACATACCTGGACAAAGCACCTCCACCGGGCCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS-3UTR CAA 90 bp | TGTGCAGGTAGGAGTGCTGCAGGGCTCGGAAGGCAGAGATTCGCTTATGTGGGTATCAGCCGTACAACATaGGGATGTTCAAAGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: CAGRSAAGLGRQRFAYVGISRTT*GCSKAS Trigger: GGAGGCCTTTGAACATCCCAATGTTGTACGGCTGAT...ACCCACATAAGCGAATCTCTGCCTTCCGAGCCCTGCAGCACTCCTACCTGCACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000120226.8 |
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| CDS-3UTR CAA 90 bp | CTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACCGGAACTCTCACACTCTaGAGGGCCACAAAGTGGCCA | + |
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Preference number: 5 (lower is better) Translates to: LPISCHSQPHLQSHQSRTGTLTL*RATKWP Trigger: TGGCCACTTTGTGGCCCTCAAGAGTGTGAGAGTTCC...GGTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS GCA 90 bp | GGTGGAGGTGCTTTGTCCAGGTATGTCCTCAGGTCCTGGTCTATATaGTCAAACACTAGGGTGACCTTGATGTCCCGATCAGTTCGGGAA | + |
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Preference number: 5 (lower is better) Translates to: GGGALSRYVLRSWSI*SNTRVTLMSRSVRE Trigger: TTCCCGAACTGATCGGGACATCAAGGTCACCCTAGTGTTTGAGCATATAGACCAGGACCTGAGGACATACCTGGACAAAGCACCTCCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS-3UTR CAA 90 bp | CTACCAATCAGTTGTCATTCCCAGCCCCACCTACAGTCTCATCAAAGCAGGACCCCAAAGTCAGCCAGCTaGACGGTCCCATTACTTGTC | + |
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Preference number: 5 (lower is better) Translates to: LPISCHSQPHLQSHQSRTPKSAS*TVPLLV Trigger: GACAAGTAATGGGACCGTCAAGCTGGCTGACTTTGG...GGTCCTGCTTTGATGAGACTGTAGGTGGGGCTGGGAATGACAACTGATTGGTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CAA 90 bp | AGGTCCCTTACCTCACCCCCAAGAACTGGTGGTTGGACTTATGTCTGTTTTGATATCAGCCGTACAACATaGGGATGTTCAAAGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: RSLTSPPRTGGWTYVCFDISRTT*GCSKAS Trigger: GGAGGCCTTTGAACATCCCAATGTTGTACGGCTGAT...ATCAAAACAGACATAAGTCCAACCACCAGTTCTTGGGGGTGAGGTAAGGGACCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS-3UTR CAA 90 bp | GCCATTTTGACCGAATATTCAAAGAAAGCATTTCTCTCTGATCTTGCCAGCCAAGGTGAACAATGCAGTTaGCATGAAGAAAATCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: AILTEYSKKAFLSDLASQGEQCS*HEENPG Trigger: GCCTGGATTTTCTTCATGCAAACTGCATTGTTCACC...TTGGCTGGCAAGATCAGAGAGAAATGCTTTCTTTGAATATTCGGTCAAAATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000006911.12 |
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| CDS GCA 72 bp | ATCCTTAATGGTCTCAACCGGCAGGCCCGGTGGAGGTaGTTTGTCCAGGTATGTCCTCAGGTCCTGGTCTAT | + |
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Preference number: 6 (lower is better) Translates to: ILNGLNRQARWR*FVQVCPQVLVY Trigger: ATAGACCAGGACCTGAGGACATACCTGGACAAAGCACCTCCACCGGGCCTGCCGGTTGAGACCATTAAGGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS CAA 72 bp | TTAATGGTCTCAACCGGCAGGCCCGGTGGAGGTGCTTaGTCCAGGTATGTCCTCAGGTCCTGGTCTATATGC | + |
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Preference number: 6 (lower is better) Translates to: LMVSTGRPGGGA*SRYVLRSWSIC Trigger: GCATATAGACCAGGACCTGAGGACATACCTGGACAAAGCACCTCCACCGGGCCTGCCGGTTGAGACCATTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS CAA 90 bp | CGATCAGTTCGGGAAGTAGCACAGACATCCATCAGCCGTACAACATaGGGATGTTCAAAGGCCTCCAGCCTCCTTAACAAGGCCACCTCA | + |
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Preference number: 6 (lower is better) Translates to: RSVREVAQTSISRTT*GCSKASSLLNKATS Trigger: TGAGGTGGCCTTGTTAAGGAGGCTGGAGGCCTTTGAACATCCCAATGTTGTACGGCTGATGGATGTCTGTGCTACTTCCCGAACTGATCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006911.12 ENSMUST00000120226.8 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS CAA 90 bp | ATTAGATCCTTAATGGTCTCAACCGGCAGGCCCGGTGGAGGTGCTTaGTCCAGGTATGTCCTCAGGTCCTGGTCTATATGCTCAAACACT | + |
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Preference number: 6 (lower is better) Translates to: IRSLMVSTGRPGGGA*SRYVLRSWSICSNT Trigger: AGTGTTTGAGCATATAGACCAGGACCTGAGGACATACCTGGACAAAGCACCTCCACCGGGCCTGCCGGTTGAGACCATTAAGGATCTAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS CCA 72 bp | GGTGGAGGTGCTTTGTCCAGGTATGTCCTCAGGTCCTaGTCTATATGCTCAAACACTAGGGTGACCTTGATG | + |
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Preference number: 6 (lower is better) Translates to: GGGALSRYVLRS*SICSNTRVTLM Trigger: CATCAAGGTCACCCTAGTGTTTGAGCATATAGACCAGGACCTGAGGACATACCTGGACAAAGCACCTCCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS CAA 72 bp | CGGGAAGTAGCACAGACATCCATCAGCCGTACAACATaGGGATGTTCAAAGGCCTCCAGCCTCCTTAACAAG | + |
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Preference number: 6 (lower is better) Translates to: REVAQTSISRTT*GCSKASSLLNK Trigger: CTTGTTAAGGAGGCTGGAGGCCTTTGAACATCCCAATGTTGTACGGCTGATGGATGTCTGTGCTACTTCCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000006911.12 ENSMUST00000120226.8 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS CAA 90 bp | TATGTCCTCAGGTCCTGGTCTATATGCTCAAACACTAGGGTGACCTaGATGTCCCGATCAGTTCGGGAAGTAGCACAGACATCCATCAGC | + |
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Preference number: 6 (lower is better) Translates to: YVLRSWSICSNTRVT*MSRSVREVAQTSIS Trigger: GCTGATGGATGTCTGTGCTACTTCCCGAACTGATCGGGACATCAAGGTCACCCTAGTGTTTGAGCATATAGACCAGGACCTGAGGACATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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| CDS CAA 72 bp | AGGTCCTGGTCTATATGCTCAAACACTAGGGTGACCTaGATGTCCCGATCAGTTCGGGAAGTAGCACAGACA | + |
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Preference number: 6 (lower is better) Translates to: RSWSICSNTRVT*MSRSVREVAQT Trigger: TGTCTGTGCTACTTCCCGAACTGATCGGGACATCAAGGTCACCCTAGTGTTTGAGCATATAGACCAGGACCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000006911.12 ENSMUST00000125682.2 ENSMUST00000133115.8 |
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