Pregenerated sensors for CDK2AP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029394Ensembl transcript IDs: ENSMUST00000031341.11, ENSMUST00000111472.6, ENSMUST00000111473.8, ENSMUST00000111474.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CTGAGCAAAGGCGCTGTGGTTTGCACTCAACTCCTCGGAGGCAGGTaGGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAG | + |
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Preference number: 1 (lower is better) Translates to: LSKGAVVCTQLLGGR*AQGKEVSWGDAYPK Trigger: CTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTCCGAGGAGTTGAGTGCAAACCACAGCGCCTTTGCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| 3UTR GCA 90 bp | CACAGTAAACACAGAACTGAGATCTACAGCCTCAGGATGGACATCTaGAGGGTGCTTGGGAGGTTGGGTAGATGGCTCTTTCTTCTGCAT | + |
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Preference number: 1 (lower is better) Translates to: HSKHRTEIYSLRMDI*RVLGRLGRWLFLLH Trigger: ATGCAGAAGAAAGAGCCATCTACCCAACCTCCCAAGCACCCTGCAGATGTCCATCCTGAGGCTGTAGATCTCAGTTCTGTGTTTACTGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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| 3UTR GCA 90 bp | AGGCAGGTTAGAGGGGACACTGGTATTTGGGGACAAACAATAGCTTaGTGTGAAGTGGCTTCACAAACATCTTTCAAATGTTTGGAAAGA | + |
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Preference number: 1 (lower is better) Translates to: RQVRGDTGIWGQTIA*CEVASQTSFKCLER Trigger: TCTTTCCAAACATTTGAAAGATGTTTGTGAAGCCACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCTCTAACCTGCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CCA 90 bp | GAGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGCACGGGGTAGTGAGATaGGCCTTCAGACCAGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: EAGELRERKSAGVMRIQRHGVVR*AFRPAR Trigger: CCTGGCTGGTCTGAAGGCCCATCTCACTACCCCGTG...CCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CCA 90 bp | CAGGTTAGAGGGGACACTGGTATTTGGGGACAAACAATAGCTTGCTGTGAAGTGCACGGGGTAGTGAGATaGGCCTTCAGACCAGCCAGG | + |
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Preference number: 2 (lower is better) Translates to: QVRGDTGIWGQTIACCEVHGVVR*AFRPAR Trigger: CCTGGCTGGTCTGAAGGCCCATCTCACTACCCCGTG...CACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCTCTAACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CCA 90 bp | GGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGCAGGTTGGGGACACTGGTATTTaGGGACAAACAATAGCTTGC | + |
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Preference number: 2 (lower is better) Translates to: GELRERKSAGVMRIQRQVGDTGI*GQTIAC Trigger: GCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCC...AACCTGCCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR GCA 90 bp | GAGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGCACATCGTCAGTTACTaGAAAATGTCCTCCCAATCT | + |
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Preference number: 2 (lower is better) Translates to: EAGELRERKSAGVMRIQRHIVSY*KMSSQS Trigger: AGATTGGGAGGACATTTTGCAGTAACTGACGATGTG...CCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR GCA 90 bp | GAGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGGGACAAACAATAGCTTaGTGTGAAGTGGCTTCACAA | + |
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Preference number: 2 (lower is better) Translates to: EAGELRERKSAGVMRIQRGQTIA*CEVASQ Trigger: TTGTGAAGCCACTTCACAGCAAGCTATTGTTTGTCC...CCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR TCA 90 bp | GAGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGACTGTGGTAGAAAAATaGCTGCCATTTTGCACAAAG | + |
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Preference number: 2 (lower is better) Translates to: EAGELRERKSAGVMRIQRTVVEK*LPFCTK Trigger: CTTTGTGCAAAATGGCAGTCATTTTTCTACCACAGT...CCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CCA 90 bp | AGTGTGGGTTCAGAGCTTAATGACTGTGGTAGAAAAATGACTGCCATTTTGCACCACGGGGTAGTGAGATaGGCCTTCAGACCAGCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: SVGSELNDCGRKMTAILHHGVVR*AFRPAR Trigger: CCTGGCTGGTCTGAAGGCCCATCTCACTACCCCGTG...GTGCAAAATGGCAGTCATTTTTCTACCACAGTCATTAAGCTCTGAACCCACACT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR GCA 90 bp | GGGGACACTGGTATTTGGGGACAAACAATAGCTTGCTGTGAAGTGGCTTCACAACACATCGTCAGTTACTaGAAAATGTCCTCCCAATCT | + |
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Preference number: 2 (lower is better) Translates to: GDTGIWGQTIACCEVASQHIVSY*KMSSQS Trigger: AGATTGGGAGGACATTTTGCAGTAACTGACGATGTG...TTGTGAAGCCACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR GCA 90 bp | CAGGTTAGAGGGGACACTGGTATTTGGGGACAAACAATAGCTTGCTGTGAAGTGCACATCGTCAGTTACTaGAAAATGTCCTCCCAATCT | + |
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Preference number: 2 (lower is better) Translates to: QVRGDTGIWGQTIACCEVHIVSY*KMSSQS Trigger: AGATTGGGAGGACATTTTGCAGTAACTGACGATGTG...CACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCTCTAACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR GCA 90 bp | GGGGACACTGGTATTTGGGGACAAACAATAGCTTGCTGTGAAGTGGCTTCACAACCTAACTACTTAAAATaGACATCGTCAGTTACTGCA | + |
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Preference number: 2 (lower is better) Translates to: GDTGIWGQTIACCEVASQPNYLK*TSSVTA Trigger: TGCAGTAACTGACGATGTGCATTTTAAGTAGTTAGG...TTGTGAAGCCACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR GCA 90 bp | ATGTGTAACCTGTGCATTTTAAAGATTGACTTCCAAGCACTCAGTCATGCAAACCCTAACTACTTAAAATaGACATCGTCAGTTACTGCA | + |
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Preference number: 2 (lower is better) Translates to: MCNLCILKIDFQALSHANPNYLK*TSSVTA Trigger: TGCAGTAACTGACGATGTGCATTTTAAGTAGTTAGG...GTTTGCATGACTGAGTGCTTGGAAGTCAATCTTTAAAATGCACAGGTTACACAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| 3UTR TCA 72 bp | AGCAGGGTCTACACTGTACACAGGCGGGCCAGCTACTaGGCAAAGGCGCTGTGGTTTGCACTCAACTCCTCG | + |
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Preference number: 3 (lower is better) Translates to: SRVYTVHRRASY*AKALWFALNSS Trigger: CGAGGAGTTGAGTGCAAACCACAGCGCCTTTGCTCAGTAGCTGGCCCGCCTGTGTACAGTGTAGACCCTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| 3UTR TCA 72 bp | AGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTaGTGCGTATCCAAAGGCAGGTTAGAGGGGACACTG | + |
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Preference number: 3 (lower is better) Translates to: RQVSSGKGSQLG*CVSKGRLEGTL Trigger: CAGTGTCCCCTCTAACCTGCCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CAA 90 bp | GAGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGTGTCCTCCCAATCTTTaGAGTGTGGGTTCAGAGCTT | + |
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Preference number: 3 (lower is better) Translates to: EAGELRERKSAGVMRIQRCPPNL*SVGSEL Trigger: AAGCTCTGAACCCACACTCAAAAGATTGGGAGGACA...CCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CAA 90 bp | ACTGAGCAAAGGCGCTGTGGTTTGCACTCAACTCCTCGGAGGCAGGTGAGCTCAAGGGGACACTGGTATTaGGGGACAAACAATAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: TEQRRCGLHSTPRRQVSSRGHWY*GTNNSL Trigger: CAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCT...TGAGCTCACCTGCCTCCGAGGAGTTGAGTGCAAACCACAGCGCCTTTGCTCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| 3UTR-3UTR CAA 90 bp | GAGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGAAAATGACTGCCATTTaGCACAAAGCCTCTCATCTC | + |
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Preference number: 3 (lower is better) Translates to: EAGELRERKSAGVMRIQRKMTAI*HKASHL Trigger: GAGATGAGAGGCTTTGTGCAAAATGGCAGTCATTTT...CCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CAA 90 bp | ACTGAGCAAAGGCGCTGTGGTTTGCACTCAACTCCTCGGAGGCAGGTGAGCTCAAAAATGACTGCCATTTaGCACAAAGCCTCTCATCTC | + |
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Preference number: 3 (lower is better) Translates to: TEQRRCGLHSTPRRQVSSKMTAI*HKASHL Trigger: GAGATGAGAGGCTTTGTGCAAAATGGCAGTCATTTT...TGAGCTCACCTGCCTCCGAGGAGTTGAGTGCAAACCACAGCGCCTTTGCTCAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| 3UTR CCA 72 bp | ACAGTAAACACAGAACTGAGATCTACAGCCTCAGGATaGACATCTGCAGGGTGCTTGGGAGGTTGGGTAGAT | + |
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Preference number: 3 (lower is better) Translates to: TVNTELRSTASG*TSAGCLGGWVD Trigger: ATCTACCCAACCTCCCAAGCACCCTGCAGATGTCCATCCTGAGGCTGTAGATCTCAGTTCTGTGTTTACTGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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| 3UTR CCA 72 bp | CGTATCCAAAGGCAGGTTAGAGGGGACACTGGTATTTaGGGACAAACAATAGCTTGCTGTGAAGTGGCTTCA | + |
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Preference number: 3 (lower is better) Translates to: RIQRQVRGDTGI*GQTIACCEVAS Trigger: TGAAGCCACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCTCTAACCTGCCTTTGGATACG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CAA 90 bp | CAGGTTAGAGGGGACACTGGTATTTGGGGACAAACAATAGCTTGCTGTGAAGTGAAAATGACTGCCATTTaGCACAAAGCCTCTCATCTC | + |
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Preference number: 3 (lower is better) Translates to: QVRGDTGIWGQTIACCEVKMTAI*HKASHL Trigger: GAGATGAGAGGCTTTGTGCAAAATGGCAGTCATTTT...CACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCTCTAACCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR GCA 72 bp | AGAGGGGACACTGGTATTTGGGGACAAACAATAGCTTaGTGTGAAGTGGCTTCACAAACATCTTTCAAATGT | + |
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Preference number: 3 (lower is better) Translates to: RGDTGIWGQTIA*CEVASQTSFKC Trigger: ACATTTGAAAGATGTTTGTGAAGCCACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR-3UTR CAA 90 bp | ATGTGTAACCTGTGCATTTTAAAGATTGACTTCCAAGCACTCAGTCATGCAAACTGTCCTCCCAATCTTTaGAGTGTGGGTTCAGAGCTT | + |
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Preference number: 3 (lower is better) Translates to: MCNLCILKIDFQALSHANCPPNL*SVGSEL Trigger: AAGCTCTGAACCCACACTCAAAAGATTGGGAGGACA...GTTTGCATGACTGAGTGCTTGGAAGTCAATCTTTAAAATGCACAGGTTACACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| 3UTR-3UTR CAA 90 bp | ATGTGTAACCTGTGCATTTTAAAGATTGACTTCCAAGCACTCAGTCATGCAAACAGGGGACACTGGTATTaGGGGACAAACAATAGCTTG | + |
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Preference number: 3 (lower is better) Translates to: MCNLCILKIDFQALSHANRGHWY*GTNNSL Trigger: CAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCT...GTTTGCATGACTGAGTGCTTGGAAGTCAATCTTTAAAATGCACAGGTTACACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| 3UTR TCA 72 bp | GGACACTGGTATTTGGGGACAAACAATAGCTTGCTGTaGAGTGGCTTCACAAACATCTTTCAAATGTTTGGA | + |
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Preference number: 3 (lower is better) Translates to: GHWYLGTNNSLL*SGFTNIFQMFG Trigger: TCCAAACATTTGAAAGATGTTTGTGAAGCCACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR GCA 90 bp | GCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGCAGGCGGCGGCGGGCATGTaGGCGGTCAAGTTCGGCTTG | + |
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Preference number: 4 (lower is better) Translates to: AGELRERKSAGVMRIQRQAAAGM*AVKFGL Trigger: CAAGCCGAACTTGACCGCGCACATGCCCGCCGCCGC...CTGCCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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| 3UTR CAA 72 bp | ACAGGCGGGCCAGCTACTGAGCAAAGGCGCTGTGGTTaGCACTCAACTCCTCGGAGGCAGGTGAGCTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: TGGPATEQRRCG*HSTPRRQVSSG Trigger: CCCTGAGCTCACCTGCCTCCGAGGAGTTGAGTGCAAACCACAGCGCCTTTGCTCAGTAGCTGGCCCGCCTGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031341.11 ENSMUST00000111474.8 |
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| CDS-3UTR TCA 90 bp | CAGGTTAGAGGGGACACTGGTATTTGGGGACAAACAATAGCTTGCTGTGAAGTGGGACACTTCCGGCGTTaGGGGCGGCGGCGGGCATGT | + |
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Preference number: 4 (lower is better) Translates to: QVRGDTGIWGQTIACCEVGHFRR*GRRRAC Trigger: ACATGCCCGCCGCCGCCCTCAACGCCGGAAGTGTCC...CACTTCACAGCAAGCTATTGTTTGTCCCCAAATACCAGTGTCCCCTCTAACCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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| CDS-3UTR GCA 90 bp | GAGGCAGGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGGATGGCCAGCAGCTCTaGATATTTACTCTGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: EAGELRERKSAGVMRIQRDGQQL*IFTLRH Trigger: GTGCCTCAGAGTAAATATGCAGAGCTGCTGGCCATC...CCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACCTGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR CCA 90 bp | ACTGCCATTTTGCACAAAGCCTCTCATCTCCACGGGGTAGTGAGATGGGCCTTCAGCAGCTGGCGATATTaGGAGGAGGTCGCCATGCTA | + |
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Preference number: 4 (lower is better) Translates to: TAILHKASHLHGVVRWAFSSWRY*EEVAML Trigger: TAGCATGGCGACCTCCTCCCAATATCGCCAGCTGCT...GAAGGCCCATCTCACTACCCCGTGGAGATGAGAGGCTTTGTGCAAAATGGCAGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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| CDS-3UTR GCA 90 bp | GTGGGTTCAGAGCTTAATGACTGTGGTAGAAAAATGACTGCCATTTTGCACAAAGGCGCTCTTGCTCCCTaGATACGTCGGTCTGATCTC | + |
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Preference number: 4 (lower is better) Translates to: VGSELNDCGRKMTAILHKGALAP*IRRSDL Trigger: GAGATCAGACCGACGTATGCAGGGAGCAAGAGCGCC...TTTGTGCAAAATGGCAGTCATTTTTCTACCACAGTCATTAAGCTCTGAACCCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR TCA 90 bp | GACTGTGGTAGAAAAATGACTGCCATTTTGCACAAAGCCTCTCATCTCCACGGGTCTGCATATTTACTCTaGGGCACCTGGCTATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: DCGRKMTAILHKASHLHGSAYLL*GTWLFP Trigger: TGGAAATAGCCAGGTGCCTCAGAGTAAATATGCAGA...CCCGTGGAGATGAGAGGCTTTGTGCAAAATGGCAGTCATTTTTCTACCACAGTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR GCA 90 bp | AGTGTGGGTTCAGAGCTTAATGACTGTGGTAGAAAAATGACTGCCATTTTGCACGATGGCCAGCAGCTCTaGATATTTACTCTGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SVGSELNDCGRKMTAILHDGQQL*IFTLRH Trigger: GTGCCTCAGAGTAAATATGCAGAGCTGCTGGCCATC...GTGCAAAATGGCAGTCATTTTTCTACCACAGTCATTAAGCTCTGAACCCACACT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR GCA 90 bp | GGTTCAGAGCTTAATGACTGTGGTAGAAAAATGACTGCCATTTTGCACAAAGCCGATGGCCAGCAGCTCTaGATATTTACTCTGAGGCAC | + |
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Preference number: 4 (lower is better) Translates to: GSELNDCGRKMTAILHKADGQQL*IFTLRH Trigger: GTGCCTCAGAGTAAATATGCAGAGCTGCTGGCCATC...GGCTTTGTGCAAAATGGCAGTCATTTTTCTACCACAGTCATTAAGCTCTGAACC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| 3UTR CAA 72 bp | GAGCTTAATGACTGTGGTAGAAAAATGACTGCCATTTaGCACAAAGCCTCTCATCTCCACGGGGTAGTGAGA | + |
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Preference number: 4 (lower is better) Translates to: ELNDCGRKMTAI*HKASHLHGVVR Trigger: TCTCACTACCCCGTGGAGATGAGAGGCTTTGTGCAAAATGGCAGTCATTTTTCTACCACAGTCATTAAGCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR TCA 90 bp | GGTTCAGAGCTTAATGACTGTGGTAGAAAAATGACTGCCATTTTGCACAAAGCCTCTGCATATTTACTCTaGGGCACCTGGCTATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: GSELNDCGRKMTAILHKASAYLL*GTWLFP Trigger: TGGAAATAGCCAGGTGCCTCAGAGTAAATATGCAGA...GGCTTTGTGCAAAATGGCAGTCATTTTTCTACCACAGTCATTAAGCTCTGAACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR TCA 90 bp | AATCTTTTGAGTGTGGGTTCAGAGCTTAATGACTGTGGTAGAAAAATGACTGCCTCTGCATATTTACTCTaGGGCACCTGGCTATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: NLLSVGSELNDCGRKMTASAYLL*GTWLFP Trigger: TGGAAATAGCCAGGTGCCTCAGAGTAAATATGCAGA...GGCAGTCATTTTTCTACCACAGTCATTAAGCTCTGAACCCACACTCAAAAGATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000031341.11 ENSMUST00000111472.6 ENSMUST00000111473.8 ENSMUST00000111474.8 |
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| CDS-3UTR CAA 90 bp | GGTGAGCTCAGGGAAAGGAAGTCAGCTGGGGTGATGCGTATCCAAAGGCAGGTTTGGACACTTCCGGCGTaGAGGGCGGCGGCGGGCATG | + |
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Preference number: 5 (lower is better) Translates to: GELRERKSAGVMRIQRQVWTLPA*RAAAGM Trigger: CATGCCCGCCGCCGCCCTCAACGCCGGAAGTGTCCA...AACCTGCCTTTGGATACGCATCACCCCAGCTGACTTCCTTTCCCTGAGCTCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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| CDS-3UTR CAA 90 bp | AAGCACTCAGTCATGCAAACGCTTAGGCAGAGAAGCTCCATGAAGCAGGGTCTACAGCAGCTGGCGATATaGGGAGGAGGTCGCCATGCT | + |
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Preference number: 5 (lower is better) Translates to: KHSVMQTLRQRSSMKQGLQQLAI*GGGRHA Trigger: AGCATGGCGACCTCCTCCCAATATCGCCAGCTGCTG...TAGACCCTGCTTCATGGAGCTTCTCTGCCTAAGCGTTTGCATGACTGAGTGCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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| CDS TCA 72 bp | GCGATATTGGGAGGAGGTCGCCATGCTAGTAGAGGGTaGGTGGACACTTCCGGCGTTGAGGGCGGCGGCGGG | + |
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Preference number: 6 (lower is better) Translates to: AILGGGRHASRG*VDTSGVEGGGG Trigger: CCCGCCGCCGCCCTCAACGCCGGAAGTGTCCACTCACCCTCTACTAGCATGGCGACCTCCTCCCAATATCGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031341.11 |
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