Pregenerated sensors for CDK11B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029062Ensembl transcript IDs: ENSMUST00000067081.10, ENSMUST00000105598.2, ENSMUST00000105600.8
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 72 bp | AACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTaGCTGTCACCACCTAGTCGGGCCACGTCCATCAAG | + |
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Preference number: 3 (lower is better) Translates to: NNQAALIQHQQV*LSPPSRATSIK Trigger: CTTGATGGACGTGGCCCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGGTGGCCTCAGAGGGCTaGGGCTCCAGTGGCCAACCT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRVASEG*GSSGQP Trigger: AGGTTGGCCACTGGAGCCGCAGCCCTCTGAGGCCAC...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGGGCCATCTTCTGCGTTaGTCCTCCTGCCAGGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRGHLLR*SSCQGS Trigger: ACTACCCTGGCAGGAGGATCAACGCAGAAGATGGCC...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGACTCCTCTACACTCCTaGATCCCTGCAGGGCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRTPLHS*IPAGLA Trigger: TGCCAGCCCTGCAGGGATGCAGGAGTGTAGAGGAGT...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGCGCTTCACTCTCTGCTaGTCACTCTTGGCAGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRRFTLC*SLLAGH Trigger: GTGGCCTGCCAAGAGTGAGCAGCAGAGAGTGAAGCG...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGGGTCTTCACCTCCCCTaGCAGGAAGGGCTGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRGLHLP*QEGLLH Trigger: ATGAAGCAGCCCTTCCTGCCAGGGGAGGTGAAGACC...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTTTTGCGGCGCTCCTCTaGCCTCCGTTCCCGCTCCTT | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPFAALL*PPFPLL Trigger: AAGGAGCGGGAACGGAGGGCAGAGGAGCGCCGCAAA...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGTTTCCCTCAGCGACGTaGTTGGGAAGCCTTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRFPSAT*LGSLPS Trigger: AGAAGGAAGGCTTCCCAATCACGTCGCTGAGGGAAA...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTCTCAAAGCGCTCTCTTaGTGGCCTCAGAGGGCTGCG | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPLKALS*WPQRAA Trigger: CGCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAG...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGTTCCTCTTCTTCCTCTaGTTCTTCACTGGTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRFLFFL*FFTGAP Trigger: GGGAGCACCAGTGAAGAATCAGAGGAAGAAGAGGAA...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTGGCCATCTTCTGCGTTaGTCCTCCTGCCAGGGTAGT | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPGHLLR*SSCQGS Trigger: ACTACCCTGGCAGGAGGATCAACGCAGAAGATGGCC...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTACTCCTCTACACTCCTaGATCCCTGCAGGGCTGGCA | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPTPLHS*IPAGLA Trigger: TGCCAGCCCTGCAGGGATGCAGGAGTGTAGAGGAGT...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTCGCTTCACTCTCTGCTaGTCACTCTTGGCAGGCCAC | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPRFTLC*SLLAGH Trigger: GTGGCCTGCCAAGAGTGAGCAGCAGAGAGTGAAGCG...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTGGGGGCACTGCTCTGTaGAGTCCCTTCACCAACTTC | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPGGTAL*SPFTNF Trigger: GAAGTTGGTGAAGGGACTCCACAGAGCAGTGCCCCC...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTGGTCTTCACCTCCCCTaGCAGGAAGGGCTGCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPGLHLP*QEGLLH Trigger: ATGAAGCAGCCCTTCCTGCCAGGGGAGGTGAAGACC...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGTTGAGAATGCCAGCATaGCTCAGCAGGAGGTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRLRMPA*LSRRLE Trigger: CTCTAACCTCCTGCTGAGCCATGCTGGCATTCTCAA...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGGATGTCTTGGAGGTCTaGCAACAAGTCTCTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRDVLEV*QQVSLF Trigger: GAAGAGAGAGACTTGTTGTCAGACCTCCAAGACATC...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTACACTCCTGCATCCCTaGAGGGCTGGCAGGTATTTG | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPTLLHP*RAGRYL Trigger: CAAATACCTGCCAGCCCTGCAGGGATGCAGGAGTGT...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGGCAGTTCTCCAAATATaGAGCCTACCGACCACATGT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRAVLQI*SLPTTC Trigger: ACATGTGGTCGGTAGGCTGCATATTTGGAGAACTGC...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGGGGCTGGCAGGTATTTaGGCAGTTCTTGTTTTAGCT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRGLAGI*AVLVLA Trigger: AGCTAAAACAAGAACTGCCCAAATACCTGCCAGCCC...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTTTTCCCTCAGCGACGTaGTTGGGAAGCCTTCCTTCT | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPFPSAT*LGSLPS Trigger: AGAAGGAAGGCTTCCCAATCACGTCGCTGAGGGAAA...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGAATCTGATCAATATCTaGCTTCCCAGGGAACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRNLINI*LPREQR Trigger: CCTCTGTTCCCTGGGAAGTCAGATATTGATCAGATT...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR GCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGAAGCCCCAAATCTCTTaGGGAGGTTGTTATAGGGAT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRKPQIS*GGCYRD Trigger: ATCCCTATAACAACCTCCGCAAGAGATTTGGGGCTT...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGCTGTCACTGATGTCTTaGAGGTCTGACAACAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: NQAALIQHQQVWLSPPSRLSLMS*RSDNKS Trigger: AGACTTGTTGTCAGACCTCCAAGACATCAGTGACAG...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTTTCCTCTTCTTCCTCTaGTTCTTCACTGGTGCTCCC | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPFLFFL*FFTGAP Trigger: GGGAGCACCAGTGAAGAATCAGAGGAAGAAGAGGAA...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTTTGAGAATGCCAGCATaGCTCAGCAGGAGGTTAGAG | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPLRMPA*LSRRLE Trigger: CTCTAACCTCCTGCTGAGCCATGCTGGCATTCTCAA...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTGATGTCTTGGAGGTCTaGCAACAAGTCTCTCTCTTC | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPDVLEV*QQVSLF Trigger: GAAGAGAGAGACTTGTTGTCAGACCTCCAAGACATC...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTTCATTTCCTCATCACTaGCTTCTTCTGCGGACTGTT | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPSFPHH*LLLRTV Trigger: AACAGTCCGCAGAAGAAGTCAGTGATGAGGAAATGA...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR TCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAATCTGATCAATATCTaGCTTCCCAGGGAACAGAGG | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPNLINI*LPREQR Trigger: CCTCTGTTCCCTGGGAAGTCAGATATTGATCAGATT...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CCA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTCTGTCACTGATGTCTTaGAGGTCTGACAACAAGTCT | + |
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Preference number: 4 (lower is better) Translates to: KNNQAALIQHQQVWLSPPLSLMS*RSDNKS Trigger: AGACTTGTTGTCAGACCTCCAAGACATCAGTGACAG...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CAA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGCGCGCTTCTCTCTCTTaGCGGCGCTCCTCTGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: NQAALIQHQQVWLSPPSRRASLS*RRSSAL Trigger: GAGGGCAGAGGAGCGCCGCAAAGAGAGAGAAGCGCG...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CAA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGTCTCAAAGCGCTCTCTaGGTGGCCTCAGAGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: NQAALIQHQQVWLSPPSRSQSAL*VASEGC Trigger: GCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAGA...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CAA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTCGCGCTTCTCTCTCTTaGCGGCGCTCCTCTGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: KNNQAALIQHQQVWLSPPRASLS*RRSSAL Trigger: GAGGGCAGAGGAGCGCCGCAAAGAGAGAGAAGCGCG...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CAA 90 bp | AACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTAGTCGGCCAAAGTCGCCCACCTaGAGAATGCCAGCATGGCTC | + |
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Preference number: 5 (lower is better) Translates to: NQAALIQHQQVWLSPPSRPKSPT*RMPAWL Trigger: GAGCCATGCTGGCATTCTCAAGGTGGGCGACTTTGG...CCGACTAGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CAA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTTCTCAAAGCGCTCTCTaGGTGGCCTCAGAGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: KNNQAALIQHQQVWLSPPSQSAL*VASEGC Trigger: GCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAGA...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CAA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTCCAAAGTCGCCCACCTaGAGAATGCCAGCATGGCTC | + |
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Preference number: 5 (lower is better) Translates to: KNNQAALIQHQQVWLSPPPKSPT*RMPAWL Trigger: GAGCCATGCTGGCATTCTCAAGGTGGGCGACTTTGG...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS-3UTR CAA 90 bp | AAAAACAACCAAGCTGCCCTGATTCAGCATCAGCAGGTCTGGCTGTCACCACCTCGGTGTAGGATCCAATaGTCATGGAGGTGCTTTACC | + |
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Preference number: 5 (lower is better) Translates to: KNNQAALIQHQQVWLSPPRCRIQ*SWRCFT Trigger: GGTAAAGCACCTCCATGACAATTGGATCCTACACCG...AGGTGGTGACAGCCAGACCTGCTGATGCTGAATCAGGGCAGCTTGGTTGTTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS CCA 72 bp | CGCTCTCTTGGTGGCCTCAGAGGGCTGCGGCTCCAGTaGCCAACCTTCCCCTTATCACTGTACTCCTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: RSLGGLRGLRLQ*PTFPLSLYSSL Trigger: GAGGGAGGAGTACAGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCAGCCCTCTGAGGCCACCAAGAGAGCG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS CCA 72 bp | TGGCTTCCGGTTGTCTCCCATCTCAAAGCGCTCTCTTaGTGGCCTCAGAGGGCTGCGGCTCCAGTGGCCAAC | + |
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Preference number: 6 (lower is better) Translates to: WLPVVSHLKALS*WPQRAAAPVAN Trigger: GTTGGCCACTGGAGCCGCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAGATGGGAGACAACCGGAAGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS GCA 72 bp | CCATCTCAAAGCGCTCTCTTGGTGGCCTCAGAGGGCTaGGGCTCCAGTGGCCAACCTTCCCCTTATCACTGT | + |
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Preference number: 6 (lower is better) Translates to: PSQSALLVASEG*GSSGQPSPYHC Trigger: ACAGTGATAAGGGGAAGGTTGGCCACTGGAGCCGCAGCCCTCTGAGGCCACCAAGAGAGCGCTTTGAGATGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS CAA 90 bp | TCATCACTGACTTCTTCTGCGGACTGTTCAGAGGCCTCCTCAGAGTaGCTCCCAGTCTCCTCTTCTTCCTCCTCCTCTTCTTCTTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: SSLTSSADCSEASSE*LPVSSSSSSSSSSS Trigger: AGAGGAAGAAGAAGAGGAGGAGGAAGAAGAGGAGACTGGGAGCAACTCTGAGGAGGCCTCTGAACAGTCCGCAGAAGAAGTCAGTGATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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| CDS CAA 72 bp | TCTACACTCCTGCATCCCTGCAGGGCTGGCAGGTATTaGGGCAGTTCTTGTTTTAGCTCAATAGGTGACAGT | + |
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Preference number: 6 (lower is better) Translates to: STLLHPCRAGRY*GSSCFSSIGDS Trigger: ACTGTCACCTATTGAGCTAAAACAAGAACTGCCCAAATACCTGCCAGCCCTGCAGGGATGCAGGAGTGTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000067081.10 ENSMUST00000105598.2 ENSMUST00000105600.8 |
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