Pregenerated sensors for CDHR5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025497Ensembl transcript IDs: ENSMUST00000080654.7, ENSMUST00000167263.9, ENSMUST00000210124.2, ENSMUST00000210773.2
Found 75 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTGGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTaGCTGTGGCTCCGAAGCCTTCCCAGAGCAACAAGCGAGCCGATG | + |
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Preference number: 1 (lower is better) Translates to: LGLVVWEEGQVVIAT*LWLRSLPRATSEPM Trigger: CATCGGCTCGCTTGTTGCTCTGGGAAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| 3UTR CAA 90 bp | ACTTGGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTaGGCTGTGGCTCCGAAGCCTTCCCAGAGCAACAAGCGAGCCGAT | + |
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Preference number: 2 (lower is better) Translates to: TWPCGLGGRSGCHSH*AVAPKPSQSNKRAD Trigger: ATCGGCTCGCTTGTTGCTCTGGGAAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| 3UTR CCA 72 bp | TGGGAGGAAGGTCAGGTTGTCATAGCCACTTGGCTGTaGCTCCGAAGCCTTCCCAGAGCAACAAGCGAGCCG | + |
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Preference number: 3 (lower is better) Translates to: WEEGQVVIATWL*LRSLPRATSEP Trigger: CGGCTCGCTTGTTGCTCTGGGAAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| 3UTR CCA 72 bp | GTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTaGCTGTGGCTCCGAAGCCTTCCCAGAGCAACAAGC | + |
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Preference number: 3 (lower is better) Translates to: VVWEEGQVVIAT*LWLRSLPRATS Trigger: GCTTGTTGCTCTGGGAAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS-3UTR CCA 90 bp | GGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGGCTGTGGCTCGAGGTCCGGGAAGCCTaGGTACTGAGCCTGGATCCT | + |
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Preference number: 4 (lower is better) Translates to: GLVVWEEGQVVIATWLWLEVREA*VLSLDP Trigger: AGGATCCAGGCTCAGTACCCAGGCTTCCCGGACCTC...GAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAGGCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS-3UTR GCA 90 bp | GCGACCACTTGGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGCTCTGGCCATCACCCTaGTCGCCTGCTCCTCTACAC | + |
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Preference number: 4 (lower is better) Translates to: ATTWPCGLGGRSGCHSHLLWPSP*SPAPLH Trigger: GTGTAGAGGAGCAGGCGAGCAGGGTGATGGCCAGAG...CAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGTGGTCGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS-3UTR GCA 90 bp | CTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGGCTGTGGCTCCGAAGCCTTCCTGTCCTTCACTGCTGTaGCAGCCTCAGATCCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LGGRSGCHSHLAVAPKPSCPSLL*QPQIPV Trigger: TACTGGGATCTGAGGCTGGCACAGCAGTGAAGGACA...GGAAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS-3UTR CCA 90 bp | GCGACCACTTGGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGCTGGGAGAACTGGAGTaGGTTTCCAGTGACACTGCG | + |
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Preference number: 4 (lower is better) Translates to: ATTWPCGLGGRSGCHSHLLGELE*VSSDTA Trigger: CGCAGTGTCACTGGAAACCCACTCCAGTTCTCCCAG...CAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGTGGTCGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| 3UTR CAA 72 bp | TGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTaGGCTGTGGCTCCGAAGCCTTCCCAGAGCAACAAG | + |
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Preference number: 4 (lower is better) Translates to: CGLGGRSGCHSH*AVAPKPSQSNK Trigger: CTTGTTGCTCTGGGAAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS-3UTR GCA 90 bp | GTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGGCTGTGGCTCCGAAGCCTTATCCCAGTACCACTGTaGCATAGTACAGGCTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: VWEEGQVVIATWLWLRSLIPVPL*HSTGSG Trigger: CCCAGAGCCTGTACTATGGCACAGTGGTACTGGGAT...AAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS-3UTR CCA 90 bp | GCGACCACTTGGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGAGGCTCTGGGAGAACTaGAGTGGGTTTCCAGTGACA | + |
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Preference number: 4 (lower is better) Translates to: ATTWPCGLGGRSGCHSHLRLWEN*SGFPVT Trigger: TGTCACTGGAAACCCACTCCAGTTCTCCCAGAGCCT...CAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGTGGTCGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS-3UTR CCA 90 bp | CTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGGCTGTGGCTCCGACTGCCATGTCCACCGTaGAAAATCTCTGGCCATCAC | + |
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Preference number: 4 (lower is better) Translates to: LVVWEEGQVVIATWLWLRLPCPP*KISGHH Trigger: GTGATGGCCAGAGATTTTCCACGGTGGACATGGCAG...TCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS TCA 90 bp | CACTTCCCGAGGCACTGGCGCTGTCCACATCGGCGGTGGGCTCGTTaGGGACCACCACGTCAGCCTCTGCCCCGATGTCCTTGCCGAACC | + |
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Preference number: 5 (lower is better) Translates to: HFPRHWRCPHRRWAR*GPPRQPLPRCPCRT Trigger: GGTTCGGCAAGGACATCGGGGCAGAGGCTGACGTGGTGGTCCTCAACGAGCCCACCGCCGATGTGGACAGCGCCAGTGCCTCGGGAAGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | GCGGCTGGGCAAGCTTGGGGCTCGGCTCTGGCTTCCGGTTGGGGGTaGGCGACCACTTGGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGT | + |
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Preference number: 5 (lower is better) Translates to: AAGQAWGSALASGWG*ATTWPCGLGGRSGC Trigger: ACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGTGGTCGCCCACCCCCAACCGGAAGCCAGAGCCGAGCCCCAAGCTTGCCCAGCCGC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS GCA 90 bp | GTCCACATCGGCGGTGGGCTCGTTGAGGACCACCACGTCAGCCTCTaGCCCGATGTCCTTGCCGAACCACACAGCCTTGTAGCCGCCCTC | + |
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Preference number: 5 (lower is better) Translates to: VHIGGGLVEDHHVSL*PDVLAEPHSLVAAL Trigger: GAGGGCGGCTACAAGGCTGTGTGGTTCGGCAAGGACATCGGGGCAGAGGCTGACGTGGTGGTCCTCAACGAGCCCACCGCCGATGTGGAC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | GCTTGGGGCTCGGCTCTGGCTTCCGGTTGGGGGTGGGCGACCACTTaGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTG | + |
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Preference number: 5 (lower is better) Translates to: AWGSALASGWGWATT*PCGLGGRSGCHSHL Trigger: CAAGTGGCTATGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGTGGTCGCCCACCCCCAACCGGAAGCCAGAGCCGAGCCCCAAGC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | CCTAGCACCCCGCCCAACACTGCCATGTCCACCGTGGAAAATCTCTaGCCATCACCCTGCTCGCCTGCTCCTGAGATGGGCCCAGTGGCT | + |
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Preference number: 5 (lower is better) Translates to: PSTPPNTAMSTVENL*PSPCSPAPEMGPVA Trigger: AGCCACTGGGCCCATCTCAGGAGCAGGCGAGCAGGGTGATGGCCAGAGATTTTCCACGGTGGACATGGCAGTGTTGGGCGGGGTGCTAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS GCA 90 bp | CGCCAAAGCGGAGAGTCTTCTTCTGGTCAGGGTCATCATCATCGCTaGCCTCACTTCCCGAGGCACTGGCGCTGTCCACATCGGCGGTGG | + |
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Preference number: 5 (lower is better) Translates to: RQSGESSSGQGHHHR*PHFPRHWRCPHRRW Trigger: CCACCGCCGATGTGGACAGCGCCAGTGCCTCGGGAAGTGAGGGCAGCGATGATGATGACCCTGACCAGAAGAAGACTCTCCGCTTTGGCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | TGGTTCACAGAGCAGACCTGGGTCTGGGCCAAGGTCCCCGGAGGTTaGCCAAACAGCACTGTGAGCCATGGCAACAGCAGGGAAGGCCAC | + |
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Preference number: 5 (lower is better) Translates to: WFTEQTWVWAKVPGG*PNSTVSHGNSREGH Trigger: GTGGCCTTCCCTGCTGTTGCCATGGCTCACAGTGCTGTTTGGCCAACCTCCGGGGACCTTGGCCCAGACCCAGGTCTGCTCTGTGAACCA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | ACAGCAGTGCACCTAGCACCCCGCCCAACACTGCCATGTCCACCGTaGAAAATCTCTGGCCATCACCCTGCTCGCCTGCTCCTGTGGAGG | + |
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Preference number: 5 (lower is better) Translates to: TAVHLAPRPTLPCPP*KISGHHPARLLLWR Trigger: CCTCCACAGGAGCAGGCGAGCAGGGTGATGGCCAGAGATTTTCCACGGTGGACATGGCAGTGTTGGGCGGGGTGCTAGGTGCACTGCTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000080654.7 |
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| CDS CCA 90 bp | GGGTCCGTAGGTCAGCTGGCAGCGTGTTCAAGACCAGGGTGGCAGTaGCCGTGTGGCTGGGCTCTACATTTTCCTCCCAAGTATCCCGTG | + |
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Preference number: 5 (lower is better) Translates to: GSVGQLAACSRPGWQ*PCGWALHFPPKYPV Trigger: CACGGGATACTTGGGAGGAAAATGTAGAGCCCAGCCACACGGCCACTGCCACCCTGGTCTTGAACACGCTGCCAGCTGACCTACGGACCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | CCGTGGAAAATCTCTGGCCATCACCCTGCTCGCCTGCTCCTGAGATaGGCCCAGTGGCTGTTGACTGAGAGGTTCCTGGCTTGGGGGTCT | + |
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Preference number: 5 (lower is better) Translates to: PWKISGHHPARLLLR*AQWLLTERFLAWGS Trigger: AGACCCCCAAGCCAGGAACCTCTCAGTCAACAGCCACTGGGCCCATCTCAGGAGCAGGCGAGCAGGGTGATGGCCAGAGATTTTCCACGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CCA 90 bp | ACAGCAGTGCACCTAGCACCCCGCCCAACACTGCCATGTCCACCGTaGAAAATCTCTGGCCATCACCCTGCTCGCCTGCTCCTGAGATGG | + |
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Preference number: 5 (lower is better) Translates to: TAVHLAPRPTLPCPP*KISGHHPARLLLRW Trigger: CCATCTCAGGAGCAGGCGAGCAGGGTGATGGCCAGAGATTTTCCACGGTGGACATGGCAGTGTTGGGCGGGGTGCTAGGTGCACTGCTGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CCA 90 bp | ACCAGGGGGTCCGTAGGTCAGCTGGCAGCGTGTTCAAGACCAGGGTaGCAGTGGCCGTGTGGCTGGGCTCTACATTTTCCTCCCAAGTAT | + |
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Preference number: 5 (lower is better) Translates to: TRGSVGQLAACSRPG*QWPCGWALHFPPKY Trigger: ATACTTGGGAGGAAAATGTAGAGCCCAGCCACACGGCCACTGCCACCCTGGTCTTGAACACGCTGCCAGCTGACCTACGGACCCCCTGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | TCCCAGTACCACTGTGCCATAGTACAGGCTCTGGGAGAACTGGAGTaGGTTTCCAGTGACACTGCGAGCCTCCACGATGGCCTGGGTCAC | + |
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Preference number: 5 (lower is better) Translates to: SQYHCAIVQALGELE*VSSDTASLHDGLGH Trigger: GTGACCCAGGCCATCGTGGAGGCTCGCAGTGTCACTGGAAACCCACTCCAGTTCTCCCAGAGCCTGTACTATGGCACAGTGGTACTGGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 ENSMUST00000210773.2 |
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| CDS TCA 90 bp | AGCTTCTGGGGGTGTGGGGAACTCTGTGGAGGGCAGTTCTCGCTCTaGCACCTGGATCTCAACAACAGCGGTGGCTGTGTCCTTAGTCAC | + |
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Preference number: 5 (lower is better) Translates to: SFWGCGELCGGQFSL*HLDLNNSGGCVLSH Trigger: GTGACTAAGGACACAGCCACCGCTGTTGTTGAGATCCAGGTGTCAGAGCGAGAACTGCCCTCCACAGAGTTCCCCACACCCCCAGAAGCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS CCA 90 bp | GTGTTCTCCTCGACTCTAAATATGGTCTGGTTCACAGAGCAGACCTaGGTCTGGGCCAAGGTCCCCGGAGGTTGGCCAAACAGCACTGTG | + |
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Preference number: 5 (lower is better) Translates to: VFSSTLNMVWFTEQT*VWAKVPGGWPNSTV Trigger: CACAGTGCTGTTTGGCCAACCTCCGGGGACCTTGGCCCAGACCCAGGTCTGCTCTGTGAACCAGACCATATTTAGAGTCGAGGAGAACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | GGGGGTGTGGGGAACTCTGTGGAGGGCAGTTCTCGCTCTGACACCTaGATCTCAACAACAGCGGTGGCTGTGTCCTTAGTCACAGTATTG | + |
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Preference number: 5 (lower is better) Translates to: GGVGNSVEGSSRSDT*ISTTAVAVSLVTVL Trigger: CAATACTGTGACTAAGGACACAGCCACCGCTGTTGTTGAGATCCAGGTGTCAGAGCGAGAACTGCCCTCCACAGAGTTCCCCACACCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS-3UTR CAA 90 bp | GTCTGGGAGGAAGGTCAGGTTGTCATAGCCACTTGGCTGTGGCTCCGAAGCCTTTCCGAAGGGAAGGTCTaGTCCTTCACTGCTGTGCCA | + |
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Preference number: 5 (lower is better) Translates to: VWEEGQVVIATWLWLRSLSEGKV*SFTAVP Trigger: TGGCACAGCAGTGAAGGACAAGACCTTCCCTTCGGA...AAGGCTTCGGAGCCACAGCCAAGTGGCTATGACAACCTGACCTTCCTCCCAGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS TCA 90 bp | TGGGTTTCCAGTGACACTGCGAGCCTCCACGATGGCCTGGGTCACTaGGTATTGAGCCATGTCTTCCTGATCAGCCCTGATCAGAAGGGT | + |
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Preference number: 5 (lower is better) Translates to: WVSSDTASLHDGLGH*VLSHVFLISPDQKG Trigger: ACCCTTCTGATCAGGGCTGATCAGGAAGACATGGCTCAATACTCAGTGACCCAGGCCATCGTGGAGGCTCGCAGTGTCACTGGAAACCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CCA 90 bp | GGCATAAGGAGTGGACAAGGGTCCCAAGGTCACGTGCAGGCCGTCTaGGACAAAAATGTTCACCAGTGGCTCAGAAACAGTGGTGTTCTC | + |
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Preference number: 5 (lower is better) Translates to: GIRSGQGSQGHVQAV*DKNVHQWLRNSGVL Trigger: GAGAACACCACTGTTTCTGAGCCACTGGTGAACATTTTTGTCCCAGACGGCCTGCACGTGACCTTGGGACCCTTGTCCACTCCTTATGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS GCA 90 bp | AGTGGCCGTGTGGCTGGGCTCTACATTTTCCTCCCAAGTATCCCGTaGCAGCAGCATGAAGGTCATGTTCTGATTCTTGAAGTAATCCAG | + |
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Preference number: 5 (lower is better) Translates to: SGRVAGLYIFLPSIP*QQHEGHVLILEVIQ Trigger: CTGGATTACTTCAAGAATCAGAACATGACCTTCATGCTGCTGGCACGGGATACTTGGGAGGAAAATGTAGAGCCCAGCCACACGGCCACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | TCCCAAGGTCACGTGCAGGCCGTCTGGGACAAAAATGTTCACCAGTaGCTCAGAAACAGTGGTGTTCTCCTCGACTCTAAATATGGTCTG | + |
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Preference number: 5 (lower is better) Translates to: SQGHVQAVWDKNVHQ*LRNSGVLLDSKYGL Trigger: CAGACCATATTTAGAGTCGAGGAGAACACCACTGTTTCTGAGCCACTGGTGAACATTTTTGTCCCAGACGGCCTGCACGTGACCTTGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 90 bp | GAGCAGGGTAGTTTACGCCCTCCAGGGAGAAGAACTTGCTGGCATTaGGGGTCACTTCCTGCAGAGTGTAGACTAGGATGTCATTTATGT | + |
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Preference number: 5 (lower is better) Translates to: EQGSLRPPGRRTCWH*GSLPAECRLGCHLC Trigger: ACATAAATGACATCCTAGTCTACACTCTGCAGGAAGTGACCCCCAATGCCAGCAAGTTCTTCTCCCTGGAGGGCGTAAACTACCCTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS GCA 90 bp | CATGGGGCTCGGGATACTTTTGGTCATTGTGAGGTTGCCATCGTGTaGGTTGATGATGAATGTGCCATCTGTGTTTCCCGCTATAATGCT | + |
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Preference number: 5 (lower is better) Translates to: HGARDTFGHCEVAIV*VDDECAICVSRYNA Trigger: AGCATTATAGCGGGAAACACAGATGGCACATTCATCATCAACGCACACGATGGCAACCTCACAATGACCAAAAGTATCCCGAGCCCCATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CCA 72 bp | GCTGGGCAAGCTTGGGGCTCGGCTCTGGCTTCCGGTTaGGGGTGGGCGACCACTTGGCCTTGTGGTCTGGGA | + |
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Preference number: 6 (lower is better) Translates to: AGQAWGSALASG*GWATTWPCGLG Trigger: TCCCAGACCACAAGGCCAAGTGGTCGCCCACCCCCAACCGGAAGCCAGAGCCGAGCCCCAAGCTTGCCCAGC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 72 bp | CAAGCTTGGGGCTCGGCTCTGGCTTCCGGTTGGGGGTaGGCGACCACTTGGCCTTGTGGTCTGGGAGGAAGG | + |
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Preference number: 6 (lower is better) Translates to: QAWGSALASGWG*ATTWPCGLGGR Trigger: CCTTCCTCCCAGACCACAAGGCCAAGTGGTCGCCCACCCCCAACCGGAAGCCAGAGCCGAGCCCCAAGCTTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 90 bp | TCACTTCCCGAGGCACTGGCGCTGTCCACATCGGCGGTGGGCTCGTaGAGGACCACCACGTCAGCCTCTGCCCCGATGTCCTTGCCGAAC | + |
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Preference number: 6 (lower is better) Translates to: SLPEALALSTSAVGS*RTTTSASAPMSLPN Trigger: GTTCGGCAAGGACATCGGGGCAGAGGCTGACGTGGTGGTCCTCAACGAGCCCACCGCCGATGTGGACAGCGCCAGTGCCTCGGGAAGTGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS GCA 72 bp | GGCGGTGGGCTCGTTGAGGACCACCACGTCAGCCTCTaGCCCGATGTCCTTGCCGAACCACACAGCCTTGTA | + |
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Preference number: 6 (lower is better) Translates to: GGGLVEDHHVSL*PDVLAEPHSLV Trigger: TACAAGGCTGTGTGGTTCGGCAAGGACATCGGGGCAGAGGCTGACGTGGTGGTCCTCAACGAGCCCACCGCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 72 bp | GAGCAGACCTGGGTCTGGGCCAAGGTCCCCGGAGGTTaGCCAAACAGCACTGTGAGCCATGGCAACAGCAGG | + |
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Preference number: 6 (lower is better) Translates to: EQTWVWAKVPGG*PNSTVSHGNSR Trigger: CCTGCTGTTGCCATGGCTCACAGTGCTGTTTGGCCAACCTCCGGGGACCTTGGCCCAGACCCAGGTCTGCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 72 bp | CTCGGCTCTGGCTTCCGGTTGGGGGTGGGCGACCACTaGGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCA | + |
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Preference number: 6 (lower is better) Translates to: LGSGFRLGVGDH*ALWSGRKVRLS Trigger: TGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGTGGTCGCCCACCCCCAACCGGAAGCCAGAGCCGAG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 90 bp | CTGGTTCACAGAGCAGACCTGGGTCTGGGCCAAGGTCCCCGGAGGTaGGCCAAACAGCACTGTGAGCCATGGCAACAGCAGGGAAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: LVHRADLGLGQGPRR*AKQHCEPWQQQGRP Trigger: TGGCCTTCCCTGCTGTTGCCATGGCTCACAGTGCTGTTTGGCCAACCTCCGGGGACCTTGGCCCAGACCCAGGTCTGCTCTGTGAACCAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 72 bp | CACCTAGCACCCCGCCCAACACTGCCATGTCCACCGTaGAAAATCTCTGGCCATCACCCTGCTCGCCTGCTC | + |
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Preference number: 6 (lower is better) Translates to: HLAPRPTLPCPP*KISGHHPARLL Trigger: GAGCAGGCGAGCAGGGTGATGGCCAGAGATTTTCCACGGTGGACATGGCAGTGTTGGGCGGGGTGCTAGGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CCA 72 bp | TCGGCTCTGGCTTCCGGTTGGGGGTGGGCGACCACTTaGCCTTGTGGTCTGGGAGGAAGGTCAGGTTGTCAT | + |
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Preference number: 6 (lower is better) Translates to: SALASGWGWATT*PCGLGGRSGCH Trigger: ATGACAACCTGACCTTCCTCCCAGACCACAAGGCCAAGTGGTCGCCCACCCCCAACCGGAAGCCAGAGCCGA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS GCA 72 bp | GCCATGTCCACCGTGGAAAATCTCTGGCCATCACCCTaGTCGCCTGCTCCTGAGATGGGCCCAGTGGCTGTT | + |
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Preference number: 6 (lower is better) Translates to: AMSTVENLWPSP*SPAPEMGPVAV Trigger: AACAGCCACTGGGCCCATCTCAGGAGCAGGCGAGCAGGGTGATGGCCAGAGATTTTCCACGGTGGACATGGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS TCA 72 bp | GGGTGTGGGGAACTCTGTGGAGGGCAGTTCTCGCTCTaGCACCTGGATCTCAACAACAGCGGTGGCTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: GCGELCGGQFSL*HLDLNNSGGCV Trigger: GACACAGCCACCGCTGTTGTTGAGATCCAGGTGTCAGAGCGAGAACTGCCCTCCACAGAGTTCCCCACACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS GCA 72 bp | GTATGGATGAGGCAGGGGTGGGTGGTCTTAGAGTTGTaGCACCAGGTGGGAATGGGCCAACACTTCCCCCAG | + |
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Preference number: 6 (lower is better) Translates to: VWMRQGWVVLEL*HQVGMGQHFPQ Trigger: CTGGGGGAAGTGTTGGCCCATTCCCACCTGGTGGCACAACTCTAAGACCACCCACCCCTGCCTCATCCATAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS CCA 72 bp | GGCAGCGTGTTCAAGACCAGGGTGGCAGTGGCCGTGTaGCTGGGCTCTACATTTTCCTCCCAAGTATCCCGT | + |
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Preference number: 6 (lower is better) Translates to: GSVFKTRVAVAV*LGSTFSSQVSR Trigger: ACGGGATACTTGGGAGGAAAATGTAGAGCCCAGCCACACGGCCACTGCCACCCTGGTCTTGAACACGCTGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 72 bp | TCCGTAGGTCAGCTGGCAGCGTGTTCAAGACCAGGGTaGCAGTGGCCGTGTGGCTGGGCTCTACATTTTCCT | + |
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Preference number: 6 (lower is better) Translates to: SVGQLAACSRPG*QWPCGWALHFP Trigger: AGGAAAATGTAGAGCCCAGCCACACGGCCACTGCCACCCTGGTCTTGAACACGCTGCCAGCTGACCTACGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 72 bp | GCCAACACTTCCCCCAGAGCTGGTGGTGGCAGGTCTTaGAGAGGTCCCAGAGGTCAAGGGGGCTTCCATAGT | + |
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Preference number: 6 (lower is better) Translates to: ANTSPRAGGGRS*RGPRGQGGFHS Trigger: ACTATGGAAGCCCCCTTGACCTCTGGGACCTCTCAAAGACCTGCCACCACCAGCTCTGGGGGAAGTGTTGGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS CAA 72 bp | CAGGTATGGATGAGGCAGGGGTGGGTGGTCTTAGAGTaGTGCCACCAGGTGGGAATGGGCCAACACTTCCCC | + |
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Preference number: 6 (lower is better) Translates to: QVWMRQGWVVLE*CHQVGMGQHFP Trigger: GGGGAAGTGTTGGCCCATTCCCACCTGGTGGCACAACTCTAAGACCACCCACCCCTGCCTCATCCATACCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS CAA 90 bp | TGGGAATGGGCCAACACTTCCCCCAGAGCTGGTGGTGGCAGGTCTTaGAGAGGTCCCAGAGGTCAAGGGGGCTTCCATAGTGGTGTTACT | + |
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Preference number: 6 (lower is better) Translates to: WEWANTSPRAGGGRS*RGPRGQGGFHSGVT Trigger: AGTAACACCACTATGGAAGCCCCCTTGACCTCTGGGACCTCTCAAAGACCTGCCACCACCAGCTCTGGGGGAAGTGTTGGCCCATTCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS TCA 72 bp | TCTGGAAGTAGGGGCTGTGGAGGGCAGTTCTCGCTCTaGCACCTGGATCTCAACAACAGCGGTGGCTGTGTC | + |
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Preference number: 6 (lower is better) Translates to: SGSRGCGGQFSL*HLDLNNSGGCV Trigger: GACACAGCCACCGCTGTTGTTGAGATCCAGGTGTCAGAGCGAGAACTGCCCTCCACAGCCCCTACTTCCAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210124.2 |
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| CDS GCA 72 bp | GGAGAGTCTTCTTCTGGTCAGGGTCATCATCATCGCTaGCCTCACTTCCCGAGGCACTGGCGCTGTCCACAT | + |
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Preference number: 6 (lower is better) Translates to: GESSSGQGHHHR*PHFPRHWRCPH Trigger: ATGTGGACAGCGCCAGTGCCTCGGGAAGTGAGGGCAGCGATGATGATGACCCTGACCAGAAGAAGACTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 72 bp | TCGTTCCTCCAGCTTCTGGGGGTGTGGGGAACTCTGTaGAGGGCAGTTCTCGCTCTGACACCTGGATCTCAA | + |
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Preference number: 6 (lower is better) Translates to: SFLQLLGVWGTL*RAVLALTPGSQ Trigger: TTGAGATCCAGGTGTCAGAGCGAGAACTGCCCTCCACAGAGTTCCCCACACCCCCAGAAGCTGGAGGAACGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000167263.9 |
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| CDS CCA 72 bp | GTAGGGGCTGTGGAGGGCAGTTCTCGCTCTGACACCTaGATCTCAACAACAGCGGTGGCTGTGTCCTTAGTC | + |
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Preference number: 6 (lower is better) Translates to: VGAVEGSSRSDT*ISTTAVAVSLV Trigger: GACTAAGGACACAGCCACCGCTGTTGTTGAGATCCAGGTGTCAGAGCGAGAACTGCCCTCCACAGCCCCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210124.2 |
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| CDS GCA 72 bp | TCACTGCTGTGCCAGCCTCAGATCCCAGTACCACTGTaGCATAGTACAGGCTCTGGGAGAACTGGAGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: SLLCQPQIPVPL*HSTGSGRTGVG Trigger: ACCCACTCCAGTTCTCCCAGAGCCTGTACTATGGCACAGTGGTACTGGGATCTGAGGCTGGCACAGCAGTGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 ENSMUST00000210773.2 |
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| CDS GCA 72 bp | GCCATGTCCACCGTGGAAAATCTCTGGCCATCACCCTaGTCGCCTGCTCCTCTACACGGATGGTTCTTGCTT | + |
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Preference number: 6 (lower is better) Translates to: AMSTVENLWPSP*SPAPLHGWFLL Trigger: AAGCAAGAACCATCCGTGTAGAGGAGCAGGCGAGCAGGGTGATGGCCAGAGATTTTCCACGGTGGACATGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS CCA 72 bp | CTAAATATGGTCTGGTTCACAGAGCAGACCTGGGTCTaGGCCAAGGTCCCCGGAGGTTGGCCAAACAGCACT | + |
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Preference number: 6 (lower is better) Translates to: LNMVWFTEQTWV*AKVPGGWPNST Trigger: AGTGCTGTTTGGCCAACCTCCGGGGACCTTGGCCCAGACCCAGGTCTGCTCTGTGAACCAGACCATATTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS TCA 72 bp | AGTGACACTGCGAGCCTCCACGATGGCCTGGGTCACTaGGTATTGAGCCATGTCTTCCTGATCAGCCCTGAT | + |
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Preference number: 6 (lower is better) Translates to: SDTASLHDGLGH*VLSHVFLISPD Trigger: ATCAGGGCTGATCAGGAAGACATGGCTCAATACTCAGTGACCCAGGCCATCGTGGAGGCTCGCAGTGTCACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 ENSMUST00000210773.2 |
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| CDS GCA 72 bp | GAGCAGGGTAGTTTACGCCCTCCAGGGAGAAGAACTTaGTGGCATTGGGGGTCACTTCCTGCAGAGTGTAGA | + |
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Preference number: 6 (lower is better) Translates to: EQGSLRPPGRRT*WHWGSLPAECR Trigger: TCTACACTCTGCAGGAAGTGACCCCCAATGCCAGCAAGTTCTTCTCCCTGGAGGGCGTAAACTACCCTGCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS GCA 72 bp | CACCCTGCTCGCCTGCTCCTCTACACGGATGGTTCTTaGTTCCTCCATAGGCACAGCAGTCAGCATGATATC | + |
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Preference number: 6 (lower is better) Translates to: HPARLLLYTDGS*FLHRHSSQHDI Trigger: GATATCATGCTGACTGCTGTGCCTATGGAGGAAGCAAGAACCATCCGTGTAGAGGAGCAGGCGAGCAGGGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000210773.2 |
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| CDS CCA 72 bp | TTGTCAGCATCCACGCCAAAGCGGAGAGTCTTCTTCTaGTCAGGGTCATCATCATCGCTGCCCTCACTTCCC | + |
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Preference number: 6 (lower is better) Translates to: LSASTPKRRVFF*SGSSSSLPSLP Trigger: GGGAAGTGAGGGCAGCGATGATGATGACCCTGACCAGAAGAAGACTCTCCGCTTTGGCGTGGATGCTGACAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 72 bp | CAGGGTAGTTTACGCCCTCCAGGGAGAAGAACTTGCTaGCATTGGGGGTCACTTCCTGCAGAGTGTAGACTA | + |
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Preference number: 6 (lower is better) Translates to: QGSLRPPGRRTC*HWGSLPAECRL Trigger: TAGTCTACACTCTGCAGGAAGTGACCCCCAATGCCAGCAAGTTCTTCTCCCTGGAGGGCGTAAACTACCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 72 bp | CGGCAGTTTGTGTCCCGTGGGGACAACCGCACTGTATaGGGCATGAATGCAGACATAGCCATCTGTGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: RQFVSRGDNRTV*GMNADIAICEG Trigger: TCCTTCACAGATGGCTATGTCTGCATTCATGCCCAATACAGTGCGGTTGTCCCCACGGGACACAAACTGCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CCA 72 bp | AGTTTACGCCCTCCAGGGAGAAGAACTTGCTGGCATTaGGGGTCACTTCCTGCAGAGTGTAGACTAGGATGT | + |
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Preference number: 6 (lower is better) Translates to: SLRPPGRRTCWH*GSLPAECRLGC Trigger: ACATCCTAGTCTACACTCTGCAGGAAGTGACCCCCAATGCCAGCAAGTTCTTCTCCCTGGAGGGCGTAAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 90 bp | AGGGTGAACTTCATGGGGCTCGGGATACTTTTGGTCATTGTGAGGTaGCCATCGTGTGCGTTGATGATGAATGTGCCATCTGTGTTTCCC | + |
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Preference number: 6 (lower is better) Translates to: RVNFMGLGILLVIVR*PSCALMMNVPSVFP Trigger: GGGAAACACAGATGGCACATTCATCATCAACGCACACGATGGCAACCTCACAATGACCAAAAGTATCCCGAGCCCCATGAAGTTCACCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CAA 90 bp | TCAGCCCTGATCAGAAGGGTGAACTTCATGGGGCTCGGGATACTTTaGGTCATTGTGAGGTTGCCATCGTGTGCGTTGATGATGAATGTG | + |
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Preference number: 6 (lower is better) Translates to: SALIRRVNFMGLGIL*VIVRLPSCALMMNV Trigger: CACATTCATCATCAACGCACACGATGGCAACCTCACAATGACCAAAAGTATCCCGAGCCCCATGAAGTTCACCCTTCTGATCAGGGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS GCA 72 bp | CGGGATACTTTTGGTCATTGTGAGGTTGCCATCGTGTaGGTTGATGATGAATGTGCCATCTGTGTTTCCCGC | + |
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Preference number: 6 (lower is better) Translates to: RDTFGHCEVAIV*VDDECAICVSR Trigger: GCGGGAAACACAGATGGCACATTCATCATCAACGCACACGATGGCAACCTCACAATGACCAAAAGTATCCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CAA 72 bp | ATCAGAAGGGTGAACTTCATGGGGCTCGGGATACTTTaGGTCATTGTGAGGTTGCCATCGTGTGCGTTGATG | + |
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Preference number: 6 (lower is better) Translates to: IRRVNFMGLGIL*VIVRLPSCALM Trigger: CATCAACGCACACGATGGCAACCTCACAATGACCAAAAGTATCCCGAGCCCCATGAAGTTCACCCTTCTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CAA 72 bp | GTCTTGATTTCAAAGGAGAATTTTGGCGCATTGTCATaGATATCCAGGACAGCCACAAACACCTCCAGGCGT | + |
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Preference number: 6 (lower is better) Translates to: VLISKENFGALS*ISRTATNTSRR Trigger: ACGCCTGGAGGTGTTTGTGGCTGTCCTGGATATCAATGACAATGCGCCAAAATTCTCCTTTGAAATCAAGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 90 bp | ACATTAAATGTCTTGATTTCAAAGGAGAATTTTGGCGCATTGTCATaGATATCCAGGACAGCCACAAACACCTCCAGGCGTACCACCACC | + |
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Preference number: 6 (lower is better) Translates to: TLNVLISKENFGALS*ISRTATNTSRRTTT Trigger: GGTGGTGGTACGCCTGGAGGTGTTTGTGGCTGTCCTGGATATCAATGACAATGCGCCAAAATTCTCCTTTGAAATCAAGACATTTAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 72 bp | ATACTTTTGGTCATTGTGAGGTTGCCATCGTGTGCGTaGATGATGAATGTGCCATCTGTGTTTCCCGCTATA | + |
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Preference number: 6 (lower is better) Translates to: ILLVIVRLPSCA*MMNVPSVFPAI Trigger: TATAGCGGGAAACACAGATGGCACATTCATCATCAACGCACACGATGGCAACCTCACAATGACCAAAAGTAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 ENSMUST00000210124.2 |
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| CDS CAA 90 bp | TCCGATACATTAAATGTCTTGATTTCAAAGGAGAATTTTGGCGCATaGTCATTGATATCCAGGACAGCCACAAACACCTCCAGGCGTACC | + |
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Preference number: 6 (lower is better) Translates to: SDTLNVLISKENFGA*SLISRTATNTSRRT Trigger: GGTACGCCTGGAGGTGTTTGTGGCTGTCCTGGATATCAATGACAATGCGCCAAAATTCTCCTTTGAAATCAAGACATTTAATGTATCGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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| CDS CAA 72 bp | GTATTCACTTTGGTGTCCTCCGATACATTAAATGTCTaGATTTCAAAGGAGAATTTTGGCGCATTGTCATTG | + |
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Preference number: 6 (lower is better) Translates to: VFTLVSSDTLNV*ISKENFGALSL Trigger: CAATGACAATGCGCCAAAATTCTCCTTTGAAATCAAGACATTTAATGTATCGGAGGACACCAAAGTGAATAC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000080654.7 ENSMUST00000167263.9 |
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