RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDH8 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036510

Ensembl transcript IDs: ENSMUST00000093249.11, ENSMUST00000128860.8, ENSMUST00000142129.8, ENSMUST00000142475.3, ENSMUST00000145601.8, ENSMUST00000155527.8

Found 344 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GAAGGACATAAGCTTCAACATTGCACGACTGGACCACGCCATCATTaGTACAGCCACAGACTCGGATGGTCAACGTACTGGTGCTACTCA +
Preference number: 1 (lower is better)
Translates to: EGHKLQHCTTGPRHH*YSHRLGWSTYWCYS
Trigger: TGAGTAGCACCAGTACGTTGACCATCCGAGTCTGTGGCTGTAGCAATGATGGCGTGGTCCAGTCGTGCAATGTTGAAGCTTATGTCCTTC
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR CCA 90 bp GACACAGCCTGTTTGAATGGCATTTCTCTCCTCCCACCTTTGAGTTaGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTT +
Preference number: 1 (lower is better)
Translates to: DTACLNGISLLPPLS*QSPPWNGLRTCEYF
Trigger: AAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAAACAGGCTGTGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CCA 90 bp AATGGCATTTCTCTCCTCCCACCTTTGAGTTGGCAATCCCCACCCTaGAATGGATTACGAACATGTGAATATTTTAAGGCTCGACACAAT +
Preference number: 1 (lower is better)
Translates to: NGISLLPPLSWQSPP*NGLRTCEYFKARHN
Trigger: ATTGTGTCGAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CCA 90 bp CTCATGCAGCCTTACATTTATAAATTCATCGACATCAACACCATTTaGAACTGGAGCAAGCCCTTGCCTTGGCATAAACTGCAAATCTGG +
Preference number: 1 (lower is better)
Translates to: LMQPYIYKFIDINTI*NWSKPLPWHKLQIW
Trigger: CCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTGCATGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR GCA 90 bp TCAACACCATTTGGAACTGGAGCAAGCCCTTGCCTTGGCATAAACTaGAAATCTGGTTTAATATCCTTACGGGGTAAAAATCCATTAATT +
Preference number: 1 (lower is better)
Translates to: STPFGTGASPCLGIN*KSGLISLRGKNPLI
Trigger: AATTAATGGATTTTTACCCCGTAAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR CCA 90 bp TTTGAGAGAAATTATCTACTTGTGAAGTTGCTATTGAGGCTTGGCTaGCCTGAAACACATTCTTGCTCAGTCCCCATTCATGAACTTTTA +
Preference number: 1 (lower is better)
Translates to: FERNYLLVKLLLRLG*PETHSCSVPIHELL
Trigger: TAAAAGTTCATGAATGGGGACTGAGCAAGAATGTGTTTCAGGCCAGCCAAGCCTCAATAGCAACTTCACAAGTAGATAATTTCTCTCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR CCA 90 bp GCGAATGATGTTTTCTCGAACGTCTTCGTCATCTTTGATAATAAGTaGTTCATTTTTGTGCCTCCTCAGGGTAACAAACAGAACCACAAT +
Preference number: 1 (lower is better)
Translates to: ANDVFSNVFVIFDNK*FIFVPPQGNKQNHN
Trigger: ATTGTGGTTCTGTTTGTTACCCTGAGGAGGCACAAAAATGAACCACTTATTATCAAAGATGACGAAGACGTTCGAGAAAACATCATTCGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR CCA 90 bp CAGCCTTACATTTATAAATTCATCGACATCAACACCATTTGGAACTaGAGCAAGCCCTTGCCTTGGCATAAACTGCAAATCTGGTTTAAT +
Preference number: 1 (lower is better)
Translates to: QPYIYKFIDINTIWN*SKPLPWHKLQIWFN
Trigger: ATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR GCA 90 bp CATATTCGAGAGAAACAGGAAGTTATCCAAGCCAACGTTCATAATTaGTGTGTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATA +
Preference number: 1 (lower is better)
Translates to: HIREKQEVIQANVHN*CVQYQTVTVKILPI
Trigger: TATGGGCAATATTTTAACAGTTACTGTCTGATATTGAACACAGCAATTATGAACGTTGGCTTGGATAACTTCCTGTTTCTCTCGAATATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
3UTR-3UTR CCA 90 bp GTGGAGGGAACGAAGAATCCTGCTTCTAGACACAGCCTGTTTGAATGGCATTTCCTCCCACCTTTGAGTTaGCAATCCCCACCCTGGAAT +
Preference number: 2 (lower is better)
Translates to: VEGTKNPASRHSLFEWHFLPPLS*QSPPWN
Trigger: ATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAG...GAAATGCCATTCAAACAGGCTGTGTCTAGAAGCAGGATTCTTCGTTCCCTCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CAA 90 bp ATGAAGTGGAGGGAACGAAGAATCCTGCTTCTAGACACAGCCTGTTaGAATGGCATTTCTCTCCTCCCACCTTTGAGTTGGCAATCCCCA +
Preference number: 2 (lower is better)
Translates to: MKWRERRILLLDTAC*NGISLLPPLSWQSP
Trigger: TGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAAACAGGCTGTGTCTAGAAGCAGGATTCTTCGTTCCCTCCACTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCCTCCCACCTTTGAGTTaGCAATCCCCACCCTGGAAT +
Preference number: 2 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLLPPLS*QSPPWN
Trigger: ATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAG...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCTGGCAATCCCCACCCTaGAATGGATTACGAACATGT +
Preference number: 2 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLWQSPP*NGLRTC
Trigger: ACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCA...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp ATAGCCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCATATGGTGGGGCCGTaGGGTCATTATCTGCCTCAT +
Preference number: 2 (lower is better)
Translates to: IATFVASKGSDPRILQNAHMVGP*GHYLPH
Trigger: ATGAGGCAGATAATGACCCCACGGCCCCACCATATG...AGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp CATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGATTATAACACCATTTGGAACTaGAGCAAGCCCTTGCCTTGG +
Preference number: 2 (lower is better)
Translates to: HLRGVTLEYYRMLSAIDYNTIWN*SKPLPW
Trigger: CCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTT...ATAATCAATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp ATAGCCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCCTTGTGGAAGAAGATaGAGTGGAGGGAACGAAGAA +
Preference number: 2 (lower is better)
Translates to: IATFVASKGSDPRILQNAPCGRR*SGGNEE
Trigger: TTCTTCGTTCCCTCCACTTCATCTTCTTCCACAAGG...AGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp TCCCAATCTCTGACTGTGGCCGTCAGGATAATATCAAATATCCAAAGACTTCTACCTTGTGGAAGAAGATaGAGTGGAGGGAACGAAGAA +
Preference number: 2 (lower is better)
Translates to: SQSLTVAVRIISNIQRLLPCGRR*SGGNEE
Trigger: TTCTTCGTTCCCTCCACTTCATCTTCTTCCACAAGG...TAGAAGTCTTTGGATATTTGATATTATCCTGACGGCCACAGTCAGAGATTGGGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp GCCAACAATTATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCCTATTCAGTCTCTGTTaGGTGGGGCCAACAATTATA +
Preference number: 2 (lower is better)
Translates to: ANNYIQRMVTVPCNLGGLLFSLC*VGPTII
Trigger: TATAATTGTTGGCCCCACTCAACAGAGACTGAATAG...GAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATAATTGTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGGAGGCTTGGCTGGCCTaGAACACATTCTTGCTCAGT +
Preference number: 2 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMEAWLA*NTFLLS
Trigger: ACTGAGCAAGAATGTGTTTCAGGCCAGCCAAGCCTC...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR TCA 90 bp TCCCAATCTCTGACTGTGGCCGTCAGGATAATATCAAATATCCAAAGACTTCTACGTCGTCGTAGCGAATaGTGTTTTCTCGAACGTCTT +
Preference number: 2 (lower is better)
Translates to: SQSLTVAVRIISNIQRLLRRRSE*CFLERL
Trigger: AAGACGTTCGAGAAAACATCATTCGCTACGACGACG...TAGAAGTCTTTGGATATTTGATATTATCCTGACGGCCACAGTCAGAGATTGGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR GCA 90 bp CTCGACACAATATTTAAAGATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATACTGGAGCAAGCCCTTaGCTTGGCATAAACTGCAAA +
Preference number: 2 (lower is better)
Translates to: LDTIFKDAIQSLLSGANNTGASP*LGINCK
Trigger: TTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGT...ATTGTTGGCCCCACTCAACAGAGACTGAATAGCATCTTTAAATATTGTGTCGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp GTGGAGGGAACGAAGAATCCTGCTTCTAGACACAGCCTGTTTGAATGGCATTTCTTGAAGCATGTTTATTaGGTGGGGCATTATGTAAGT +
Preference number: 2 (lower is better)
Translates to: VEGTKNPASRHSLFEWHFLKHVY*VGHYVS
Trigger: ACTTACATAATGCCCCACCCAATAAACATGCTTCAA...GAAATGCCATTCAAACAGGCTGTGTCTAGAAGCAGGATTCTTCGTTCCCTCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp ATAGCCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTGACATCAACACCATTTaGAACTGGAGCAAGCCCTTG +
Preference number: 2 (lower is better)
Translates to: IATFVASKGSDPRILQNADINTI*NWSKPL
Trigger: CAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTC...AGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp ACATTTATAAATTCATCGACATCAACACCATTTGGAACTGGAGCAAGCCCTTGCCTTGCTTCTGGCGGTTaGATCCATTATGTTTTGCCA +
Preference number: 2 (lower is better)
Translates to: TFINSSTSTPFGTGASPCLASGG*IHYVLP
Trigger: TGGCAAAACATAATGGATTCAACCGCCAGAAGCAAG...GCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp TTGAGTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGCATCTGTCTCTGATGTaGTCCACTGTGGAATACTGT +
Preference number: 2 (lower is better)
Translates to: LSWQSPPWNGLRTCEYFKHLSLM*STVEYC
Trigger: ACAGTATTCCACAGTGGACCACATCAGAGACAGATG...CTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CAA 90 bp TGGAATTGTCTATTTGAGAGAAATTATCTACTTGTGAAGTTGCTATaGAGGCTTGGCTGGCCTGAAACACATTCTTGCTCAGTCCCCATT +
Preference number: 2 (lower is better)
Translates to: WNCLFERNYLLVKLL*RLGWPETHSCSVPI
Trigger: AATGGGGACTGAGCAAGAATGTGTTTCAGGCCAGCCAAGCCTCAATAGCAACTTCACAAGTAGATAATTTCTCTCAAATAGACAATTCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR TCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCCTTGTGGAAGAAGATaGAGTGGAGGGAACGAAGAA +
Preference number: 2 (lower is better)
Translates to: YSKETITSPLDNIACHTYPCGRR*SGGNEE
Trigger: TTCTTCGTTCCCTCCACTTCATCTTCTTCCACAAGG...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATAAAAACCATCTGTCTCTaGTGTGGTCCACTGTGGAAT +
Preference number: 2 (lower is better)
Translates to: LSTLKRLLPLPLIILPAIKTICL*CGPLWN
Trigger: ATTCCACAGTGGACCACATCAGAGACAGATGGTTTT...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp CATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGATTATCTATTCAGTCTCTGTTaGGTGGGGCCAACAATTATA +
Preference number: 2 (lower is better)
Translates to: HLRGVTLEYYRMLSAIDYLFSLC*VGPTII
Trigger: TATAATTGTTGGCCCCACTCAACAGAGACTGAATAG...ATAATCAATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATCTGTCTCTGATGTaGTCCACTGTGGAATACTGT +
Preference number: 2 (lower is better)
Translates to: YTFYSKETITSPLDNIACHLSLM*STVEYC
Trigger: ACAGTATTCCACAGTGGACCACATCAGAGACAGATG...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACTTGAAGCATGTTTATTaGGTGGGGCATTATGTAAGT +
Preference number: 2 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHLKHVY*VGHYVS
Trigger: ACTTACATAATGCCCCACCCAATAAACATGCTTCAA...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCCATAAACTGCAAATCTaGTTTAATATCCTTACGGGG +
Preference number: 2 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLHKLQI*FNILTG
Trigger: CCCCGTAAGGATATTAAACCAGATTTGCAGTTTATG...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp CTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCAAAATGTAAAACCATCTGTCTCTaGTGTGGTCCACTGTGGAAT +
Preference number: 2 (lower is better)
Translates to: LLPLPLIILPAILISSKCKTICL*CGPLWN
Trigger: ATTCCACAGTGGACCACATCAGAGACAGATGGTTTT...ACATTTTGATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp GAAAATAGTCCAAAAGTTTCTCTGGGAAATGCTGTTCCTGTAATCACCAGTCACAAAAGTGACCCACAGTaGGATTTCATTGCACAGTTT +
Preference number: 2 (lower is better)
Translates to: ENSPKVSLGNAVPVITSHKSDPQ*DFIAQF
Trigger: AAACTGTGCAATGAAATCTCACTGTGGGTCACTTTT...GTGACTGGTGATTACAGGAACAGCATTTCCCAGAGAAACTTTTGGACTATTTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000093249.11
3UTR-3UTR CCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCATCTGTCTCTGATGTaGTCCACTGTGGAATACTGT +
Preference number: 2 (lower is better)
Translates to: YSKETITSPLDNIACHTYHLSLM*STVEYC
Trigger: ACAGTATTCCACAGTGGACCACATCAGAGACAGATG...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp CATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGATTATTCAGTCTCTGTTGAGTaGGGCCAACAATTATATACA +
Preference number: 2 (lower is better)
Translates to: HLRGVTLEYYRMLSAIDYSVSVE*GQQLYT
Trigger: TGTATATAATTGTTGGCCCCACTCAACAGAGACTGA...ATAATCAATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp ATACCTCACACAACCAGGTATCTGAGTGTAGAGGTAATAAATATGCATGTATTACTATTGAGGCTTGGCTaGCCTGAAACACATTCTTGC +
Preference number: 2 (lower is better)
Translates to: IPHTTRYLSVEVINMHVLLLRLG*PETHSC
Trigger: GCAAGAATGTGTTTCAGGCCAGCCAAGCCTCAATAG...TAATACATGCATATTTATTACCTCTACACTCAGATACCTGGTTGTGTGAGGTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR CCA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCTCCATTAATTCCATCTaGGTTTTGCAAAGTTGCAAT +
Preference number: 2 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLSINSI*VLQSCN
Trigger: ATTGCAACTTTGCAAAACCCAGATGGAATTAATGGA...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR CAA 90 bp ATTTTAAGGCTCGACACAATATTTAAAGATGCTATTCAGTCTCTGTaGAGTGGGGCCAACAATTATATACAACGTATGGTCACCGTACCA +
Preference number: 2 (lower is better)
Translates to: ILRLDTIFKDAIQSL*SGANNYIQRMVTVP
Trigger: TGGTACGGTGACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATCTTTAAATATTGTGTCGAGCCTTAAAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR TCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATTGGGAGAGGAAAATTTaGAGCATGTTTATTGGGTGG +
Preference number: 2 (lower is better)
Translates to: YSKETITSPLDNIACHTYWERKI*SMFIGW
Trigger: CCACCCAATAAACATGCTTCAAATTTTCCTCTCCCA...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR GCA 90 bp TCTGCCTCATGCAGCCTTACATTTATAAATTCATCGACATCAACACCATTTGGAAGCAGACCAAAGTATTaGTTTATCATTTGTGACGGG +
Preference number: 2 (lower is better)
Translates to: SASCSLTFINSSTSTPFGSRPKY*FIICDG
Trigger: CCCGTCACAAATGATAAAGCAATACTTTGGTCTGCT...TCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTGCATGAGGCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR GCA 90 bp ACATTTATAAATTCATCGACATCAACACCATTTGGAACTGGAGCAAGCCCTTGCGAATCCATTATGTTTTaGCAGAATGCTCAGGGAATT +
Preference number: 2 (lower is better)
Translates to: TFINSSTSTPFGTGASPCESIMF*QNAQGI
Trigger: AATTCCCTGAGCATTCTGGCAAAACATAATGGATTC...GCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR GCA 90 bp CTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCTTTATCATTTGTGACAGTGGTTCATTTTTGTaGCTCCTCAGGGTAACAAAC +
Preference number: 2 (lower is better)
Translates to: LHKVITYSRPKYCFIICDSGSFL*LLRVTN
Trigger: GTTTGTTACCCTGAGGAGGCACAAAAATGAACCACT...GTCACAAATGATAAAGCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR GCA 90 bp TCCCAATCTCTGACTGTGGCCGTCAGGATAATATCAAATATCCAAAGACTTCTATGCCTTGGCATAAACTaGAAATCTGGTTTAATATCC +
Preference number: 2 (lower is better)
Translates to: SQSLTVAVRIISNIQRLLCLGIN*KSGLIS
Trigger: GGATATTAAACCAGATTTGCAGTTTATGCCAAGGCA...TAGAAGTCTTTGGATATTTGATATTATCCTGACGGCCACAGTCAGAGATTGGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CCA 90 bp AACAGCCATTTCAGGGTTTCAAAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTTTGAGTAATACATCATaGCTCCTGGATGCGAGAAAA +
Preference number: 2 (lower is better)
Translates to: NSHFRVSKKVVKVAQSRTLSNTS*LLDARK
Trigger: TTTTCTCGCATCCAGGAGCCATGATGTATTACTCAA...AGTCCTGCTTTGTGCTACTTTTACAACTTTCTTTGAAACCCTGAAATGGCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR TCA 90 bp AACAGCCATTTCAGGGTTTCAAAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTCTTATATCACTGTTTTaGGTAATACATCATGGCTCC +
Preference number: 2 (lower is better)
Translates to: NSHFRVSKKVVKVAQSRTLISLF*VIHHGS
Trigger: GGAGCCATGATGTATTACTCAAAACAGTGATATAAG...AGTCCTGCTTTGTGCTACTTTTACAACTTTCTTTGAAACCCTGAAATGGCTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR CCA 90 bp GAAAATAGTCCAAAAGTTTCTCTGGGAAATGCTGTTCCTGTAATCACCAGTCACTTTTCTACTCCTACATaGCAGGTTTGCATTACAAAT +
Preference number: 2 (lower is better)
Translates to: ENSPKVSLGNAVPVITSHFSTPT*QVCITN
Trigger: ATTTGTAATGCAAACCTGCCATGTAGGAGTAGAAAA...GTGACTGGTGATTACAGGAACAGCATTTCCCAGAGAAACTTTTGGACTATTTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR GCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGCTGAAGGCATTAAACTaGTTCAATTCTGTTTCAGCA +
Preference number: 2 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMLKALN*FNSVSA
Trigger: TGCTGAAACAGAATTGAAGCAGTTTAATGCCTTCAG...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR GCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGCCAGCAAGTTTGGCCTaGTTGAAAATCTCTAAATAT +
Preference number: 2 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMPASLA*LKISKY
Trigger: ATATTTAGAGATTTTCAAGCAGGCCAAACTTGCTGG...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR GCA 90 bp ATACCTCACACAACCAGGTATCTGAGTGTAGAGGTAATAAATATGCATGTATTAATTCCTAGCCTTTTATaGATAGTCCAGCAAGTTTGG +
Preference number: 2 (lower is better)
Translates to: IPHTTRYLSVEVINMHVLIPSLL*IVQQVW
Trigger: CCAAACTTGCTGGACTATGCATAAAAGGCTAGGAAT...TAATACATGCATATTTATTACCTCTACACTCAGATACCTGGTTGTGTGAGGTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR CCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATATTTTCTACTCCTACATaGCAGGTTTGCATTACAAAT +
Preference number: 2 (lower is better)
Translates to: LSTLKRLLPLPLIILPAIFSTPT*QVCITN
Trigger: ATTTGTAATGCAAACCTGCCATGTAGGAGTAGAAAA...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR GCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGTGCCACTTGTTATACTaGCATCACATTTTTAGAACT +
Preference number: 2 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMCHLLY*HHIFRT
Trigger: AGTTCTAAAAATGTGATGGCAGTATAACAAGTGGCA...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR CCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGAAATACCAACTGCTTTaGTATTTGGGCAAAACCTTA +
Preference number: 2 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMKYQLL*YLGKTL
Trigger: TAAGGTTTTGCCCAAATACCAAAGCAGTTGGTATTT...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR GCA 72 bp GAGCTCTATTTCCTGTTTCGTGTGTGTGTGTGCGCGTaGACACGCGTGTGTGTGTGTGTGTGTGTGTGTGCA +
Preference number: 3 (lower is better)
Translates to: ELYFLFRVCVCA*TRVCVCVCVCA
Trigger: TGCACACACACACACACACACACACACGCGTGTGCACGCGCACACACACACACGAAACAGGAAATAGAGCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR GCA 72 bp AAGCTTCAACATTGCACGACTGGACCACGCCATCATTaGTACAGCCACAGACTCGGATGGTCAACGTACTGG +
Preference number: 3 (lower is better)
Translates to: KLQHCTTGPRHH*YSHRLGWSTYW
Trigger: CCAGTACGTTGACCATCCGAGTCTGTGGCTGTAGCAATGATGGCGTGGTCCAGTCGTGCAATGTTGAAGCTT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp TTGAATGGCATTTCTCTCCTCCCACCTTTGAGTTGGCAATCCCCACCCTGGAATCAGAAGGTAGACTTCTaGCTTCTGGCGGTTGAATCC +
Preference number: 3 (lower is better)
Translates to: LNGISLLPPLSWQSPPWNQKVDF*LLAVES
Trigger: GGATTCAACCGCCAGAAGCAAGAAGTCTACCTTCTG...ATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp TTGAATGGCATTTCTCTCCTCCCACCTTTGAGTTGGCAATCCCCACCCTGGAATCGACATCAACACCATTaGGAACTGGAGCAAGCCCTT +
Preference number: 3 (lower is better)
Translates to: LNGISLLPPLSWQSPPWNRHQHH*ELEQAL
Trigger: AAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCG...ATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp ACGAGCAGCAAAATGATGCATGCTAATATAGCAATTAAGGCGCCCATACTGAGTTGGACCACGCCATCATaGCTACAGCCACAGACTCGG +
Preference number: 3 (lower is better)
Translates to: TSSKMMHANIAIKAPILSWTTPS*LQPQTR
Trigger: CCGAGTCTGTGGCTGTAGCAATGATGGCGTGGTCCA...ACTCAGTATGGGCGCCTTAATTGCTATATTAGCATGCATCATTTTGCTGCTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp TTGAGTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGTCTCTCCTCCCACCTTaGAGTTGGCAATCCCCACCC +
Preference number: 3 (lower is better)
Translates to: LSWQSPPWNGLRTCEYFKSLLPP*SWQSPP
Trigger: GGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGA...CTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CCA 72 bp TGTTTGAATGGCATTTCTCTCCTCCCACCTTTGAGTTaGCAATCCCCACCCTGGAATGGATTACGAACATGT +
Preference number: 3 (lower is better)
Translates to: CLNGISLLPPLS*QSPPWNGLRTC
Trigger: ACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCCTAGACACAGCCTGTTaGAATGGCATTTCTCTCCTC +
Preference number: 3 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLLDTAC*NGISLL
Trigger: GAGGAGAGAAATGCCATTCAAACAGGCTGTGTCTAG...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp AAATTCATCGACATCAACACCATTTGGAACTGGAGCAAGCCCTTGCCTTGGCATCTGGGTTTTGCAAAGTaGCAATGTCAAAAGCCTCTG +
Preference number: 3 (lower is better)
Translates to: KFIDINTIWNWSKPLPWHLGFAK*QCQKPL
Trigger: CAGAGGCTTTTGACATTGCAACTTTGCAAAACCCAG...ATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR CCA 72 bp TCTCTCCTCCCACCTTTGAGTTGGCAATCCCCACCCTaGAATGGATTACGAACATGTGAATATTTTAAGGCT +
Preference number: 3 (lower is better)
Translates to: SLLPPLSWQSPP*NGLRTCEYFKA
Trigger: AGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp TATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCCCCAATCTCCTCCCCTTGATAATATaGCCTGCCATACTTATCTCA +
Preference number: 3 (lower is better)
Translates to: YIQRMVTVPCNLGGLPNLLPLII*PAILIS
Trigger: TGAGATAAGTATGGCAGGCAATATTATCAAGGGGAG...GAGATTGGGGAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp GTGGAGGGAACGAAGAATCCTGCTTCTAGACACAGCCTGTTTGAATGGCATTTCTTTGAAGCATGTTTATaGGGTGGGGCATTATGTAAG +
Preference number: 3 (lower is better)
Translates to: VEGTKNPASRHSLFEWHFFEACL*GGALCK
Trigger: CTTACATAATGCCCCACCCAATAAACATGCTTCAAA...GAAATGCCATTCAAACAGGCTGTGTCTAGAAGCAGGATTCTTCGTTCCCTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCGCTATTCAGTCTCTGTaGAGTGGGGCCAACAATTAT +
Preference number: 3 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLAIQSL*SGANNY
Trigger: ATAATTGTTGGCCCCACTCAACAGAGACTGAATAGC...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp CCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTCTAGACACAGCCTGTTaGAATGGCATTTCTCTCCTC +
Preference number: 3 (lower is better)
Translates to: PHLLHLRGVTLEYYRMLSLDTAC*NGISLL
Trigger: GAGGAGAGAAATGCCATTCAAACAGGCTGTGTCTAG...ACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACTCTTGCTTCTGGCGGTaGAATCCATTATGTTTTGCC +
Preference number: 3 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHSCFWR*NPLCFA
Trigger: GGCAAAACATAATGGATTCAACCGCCAGAAGCAAGA...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp ATAGCCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTAACTGGAGCAAGCCCTaGCCTTGGCATAAACTGCAA +
Preference number: 3 (lower is better)
Translates to: IATFVASKGSDPRILQNANWSKP*PWHKLQ
Trigger: TTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTT...AGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGGCTAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp GCCAACAATTATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCCTCCCCTTGATAATATaGCCTGCCATACTTATCTCA +
Preference number: 3 (lower is better)
Translates to: ANNYIQRMVTVPCNLGGLLPLII*PAILIS
Trigger: TGAGATAAGTATGGCAGGCAATATTATCAAGGGGAG...GAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATAATTGTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp GATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGGTCGCTATTCAGTCTCTGTaGAGTGGGGCCAACAATTAT +
Preference number: 3 (lower is better)
Translates to: DAIQSLLSGANNYIQRMVAIQSL*SGANNY
Trigger: ATAATTGTTGGCCCCACTCAACAGAGACTGAATAGC...GACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCATAAGTGGTTCATTTTaGTGCCTCCTCAGGGTAACA +
Preference number: 3 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLISGSF*CLLRVT
Trigger: TGTTACCCTGAGGAGGCACAAAAATGAACCACTTAT...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR CCA 72 bp AATTATCTACTTGTGAAGTTGCTATTGAGGCTTGGCTaGCCTGAAACACATTCTTGCTCAGTCCCCATTCAT +
Preference number: 3 (lower is better)
Translates to: NYLLVKLLLRLG*PETHSCSVPIH
Trigger: ATGAATGGGGACTGAGCAAGAATGTGTTTCAGGCCAGCCAAGCCTCAATAGCAACTTCACAAGTAGATAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR CCA 72 bp ATCAACACCATTTGGAACTGGAGCAAGCCCTTGCCTTaGCATAAACTGCAAATCTGGTTTAATATCCTTACG +
Preference number: 3 (lower is better)
Translates to: INTIWNWSKPLP*HKLQIWFNILT
Trigger: CGTAAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR GCA 72 bp TTTGGAACTGGAGCAAGCCCTTGCCTTGGCATAAACTaGAAATCTGGTTTAATATCCTTACGGGGTAAAAAT +
Preference number: 3 (lower is better)
Translates to: FGTGASPCLGIN*KSGLISLRGKN
Trigger: ATTTTTACCCCGTAAGGATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR CCA 72 bp CCTTACATTTATAAATTCATCGACATCAACACCATTTaGAACTGGAGCAAGCCCTTGCCTTGGCATAAACTG +
Preference number: 3 (lower is better)
Translates to: PYIYKFIDINTI*NWSKPLPWHKL
Trigger: CAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp CTCGACACAATATTTAAAGATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATCTATTACCTCTCCCCTaGATAATATTGCCTGCCATA +
Preference number: 3 (lower is better)
Translates to: LDTIFKDAIQSLLSGANNLLPLP*IILPAI
Trigger: TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAG...ATTGTTGGCCCCACTCAACAGAGACTGAATAGCATCTTTAAATATTGTGTCGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTATTACCTCTCCCCTaGATAATATTGCCTGCCATA +
Preference number: 3 (lower is better)
Translates to: LSTLKRLLPLPLIILPAILLPLP*IILPAI
Trigger: TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAG...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CCA 72 bp AGAGTGACTTATATCACTGTTTTGAGTAATACATCATaGCTCCTGGATGCGAGAAAACATCCGCCTTGTAAA +
Preference number: 3 (lower is better)
Translates to: RVTYITVLSNTS*LLDARKHPPCK
Trigger: TTTACAAGGCGGATGTTTTCTCGCATCCAGGAGCCATGATGTATTACTCAAAACAGTGATATAAGTCACTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR CCA 72 bp ATTTATAAATTCATCGACATCAACACCATTTGGAACTaGAGCAAGCCCTTGCCTTGGCATAAACTGCAAATC +
Preference number: 3 (lower is better)
Translates to: IYKFIDINTIWN*SKPLPWHKLQI
Trigger: GATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCCCCTTGATAATATaGCCTGCCATACTTATCTCA +
Preference number: 3 (lower is better)
Translates to: YSKETITSPLDNIACHTYLPLII*PAILIS
Trigger: TGAGATAAGTATGGCAGGCAATATTATCAAGGGGAG...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCTTTGAAGCATGTTTATaGGGTGGGGCATTATGTAAG +
Preference number: 3 (lower is better)
Translates to: LGEENLKHVYWVGHYVSIFEACL*GGALCK
Trigger: CTTACATAATGCCCCACCCAATAAACATGCTTCAAA...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATATTGGGAGAGGAAAATTaGAAGCATGTTTATTGGGTG +
Preference number: 3 (lower is better)
Translates to: LSTLKRLLPLPLIILPAILGEEN*KHVYWV
Trigger: CACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR GCA 72 bp TTTATTTTTAAGCAGGTCGTTTTTCATACTCAAGCTTaGCAGAAGCAAAGCTTGGACTGTCCTGAAACTTCA +
Preference number: 3 (lower is better)
Translates to: FIFKQVVFHTQA*QKQSLDCPETS
Trigger: TGAAGTTTCAGGACAGTCCAAGCTTTGCTTCTGGCAAGCTTGAGTATGAAAAACGACCTGCTTAAAAATAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR CAA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATTTGGGAGAGGAAAATTaGAAGCATGTTTATTGGGTG +
Preference number: 3 (lower is better)
Translates to: YSKETITSPLDNIACHTYLGEEN*KHVYWV
Trigger: CACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR-3UTR CAA 90 bp ATAAAAACCATTTGCACTCATAAGAATCCTTACAGAAGACACATATCAGCAGCACACTGTCAAGTTTCTTaGTCACTTTCACCAACAGAG +
Preference number: 3 (lower is better)
Translates to: IKTICTHKNPYRRHISAAHCQVS*SLSPTE
Trigger: CTCTGTTGGTGAAAGTGACAAAGAAACTTGACAGTG...TGCTGCTGATATGTGTCTTCTGTAAGGATTCTTATGAGTGCAAATGGTTTTTAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR TCA 72 bp TCGACACAATATTTAAAGATGCTATTCAGTCTCTGTTaGGTGGGGCCAACAATTATATACAACGTATGGTCA +
Preference number: 3 (lower is better)
Translates to: STQYLKMLFSLC*VGPTIIYNVWS
Trigger: TGACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATCTTTAAATATTGTGTCGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR TCA 72 bp AGCCTTTTATGCATAGTCCAGCAAGTTTGGCCTGCTTaGAAATCTCTAAATATTCCTTTTCAAAGGCATACA +
Preference number: 3 (lower is better)
Translates to: SLLCIVQQVWPA*KSLNIPFQRHT
Trigger: TGTATGCCTTTGAAAAGGAATATTTAGAGATTTTCAAGCAGGCCAAACTTGCTGGACTATGCATAAAAGGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR GCA 72 bp TCATTACTTATGATGGCCACGACTAGTTTTCTAGTTTaGTATGCACAGAGTGACTTATATCACTGTTTTGAG +
Preference number: 3 (lower is better)
Translates to: SLLMMATTSFLV*YAQSDLYHCFE
Trigger: CTCAAAACAGTGATATAAGTCACTCTGTGCATAGCAAACTAGAAAACTAGTCGTGGCCATCATAAGTAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR CAA 90 bp ATACCTCACACAACCAGGTATCTGAGTGTAGAGGTAATAAATATGCATGTATTACAACTGCTTTGGTATTaGGGCAAAACCTTATTAGCA +
Preference number: 3 (lower is better)
Translates to: IPHTTRYLSVEVINMHVLQLLWY*GKTLLA
Trigger: TGCTAATAAGGTTTTGCCCAAATACCAAAGCAGTTG...TAATACATGCATATTTATTACCTCTACACTCAGATACCTGGTTGTGTGAGGTAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR-3UTR CAA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATAATTCCATCTGGGTTTaGCAAAGTTGCAATGTCAAA +
Preference number: 3 (lower is better)
Translates to: YSKETITSPLDNIACHTYNSIWV*QSCNVK
Trigger: TTTGACATTGCAACTTTGCAAAACCCAGATGGAATT...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
3UTR GCA 72 bp GAGAAACAGGAAGTTATCCAAGCCAACGTTCATAATTaGTGTGTTCAATATCAGACAGTAACTGTTAAAATA +
Preference number: 3 (lower is better)
Translates to: EKQEVIQANVHN*CVQYQTVTVKI
Trigger: TATTTTAACAGTTACTGTCTGATATTGAACACAGCAATTATGAACGTTGGCTTGGATAACTTCCTGTTTCTC
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp TTGAATGGCATTTCTCTCCTCCCACCTTTGAGTTGGCAATCCCCACCCTGGAATCAGTCAGGGTCACTGTaGGTGTTGTGGTTCCAGACA +
Preference number: 4 (lower is better)
Translates to: LNGISLLPPLSWQSPPWNQSGSL*VLWFQT
Trigger: TGTCTGGAACCACAACACTCACAGTGACCCTGACTG...ATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGGTCTGGACTCCAAGGAGCTaGGGGAGCCAGCCACAGACC +
Preference number: 4 (lower is better)
Translates to: DAIQSLLSGANNYIQRMVWTPRS*GSQPQT
Trigger: GGTCTGTGGCTGGCTCCCTCAGCTCCTTGGAGTCCA...GACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR TCA 90 bp TATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCCCCAATCTCAAGGAGGTAAGTTGGTaGAGAGAAGACCGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: YIQRMVTVPCNLGGLPNLKEVSW*REDRRL
Trigger: GAGCCTCCGGTCTTCTCTTCACCAACTTACCTCCTT...GAGATTGGGGAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp TTGAATGGCATTTCTCTCCTCCCACCTTTGAGTTGGCAATCCCCACCCTGGAATTGTCTTCACTCTGCCTaGTTAGTTCCAAAGGGGATC +
Preference number: 4 (lower is better)
Translates to: LNGISLLPPLSWQSPPWNCLHSA*LVPKGI
Trigger: GATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGACA...ATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp GTGGAGGGAACGAAGAATCCTGCTTCTAGACACAGCCTGTTTGAATGGCATTTCCGCATGTCTTCACTCTaGCTGCTTAGTTCCAAAGGG +
Preference number: 4 (lower is better)
Translates to: VEGTKNPASRHSLFEWHFRMSSL*LLSSKG
Trigger: CCCTTTGGAACTAAGCAGGCAGAGTGAAGACATGCG...GAAATGCCATTCAAACAGGCTGTGTCTAGAAGCAGGATTCTTCGTTCCCTCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CAA 72 bp CTGTTTGAATGGCATTTCTCTCCTCCCACCTTTGAGTaGGCAATCCCCACCCTGGAATGGATTACGAACATG +
Preference number: 4 (lower is better)
Translates to: LFEWHFSPPTFE*AIPTLEWITNM
Trigger: CATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAAACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CAA 72 bp AGGGAACGAAGAATCCTGCTTCTAGACACAGCCTGTTaGAATGGCATTTCTCTCCTCCCACCTTTGAGTTGG +
Preference number: 4 (lower is better)
Translates to: RERRILLLDTAC*NGISLLPPLSW
Trigger: CCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAAACAGGCTGTGTCTAGAAGCAGGATTCTTCGTTCCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCAGTCAGGGTCACTGTaGGTGTTGTGGTTCCAGACA +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHQSGSL*VLWFQT
Trigger: TGTCTGGAACCACAACACTCACAGTGACCCTGACTG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTCTCCTCCCACCTTTaGGTTGGCAATCCCCACCGG +
Preference number: 4 (lower is better)
Translates to: LSTLKRLLPLPLIILPAILSSHL*VGNPHR
Trigger: CCGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAG...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093249.11
CDS-3UTR CCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCATATGGTGGGGCCGTaGGGTCATTATCTGCCTCAT +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHHMVGP*GHYLPH
Trigger: ATGAGGCAGATAATGACCCCACGGCCCCACCATATG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR TCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCAGTCAGGGTCACTGTaGGTGTTGTGGTTCCAGACA +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGQSGSL*VLWFQT
Trigger: TGTCTGGAACCACAACACTCACAGTGACCCTGACTG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp GCCAACAATTATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCCCTGGGCATCAGAAGTaGTTTCGAATAGTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: ANNYIQRMVTVPCNLGGLPGHQK*FRIVLS
Trigger: GGACAGCACTATTCGAAATCACTTCTGATGCCCAGG...GAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATAATTGTTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGAAGGAGGTAAGTTGGTaGAGAGAAGACCGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGKEVSW*REDRRL
Trigger: GAGCCTCCGGTCTTCTCTTCACCAACTTACCTCCTT...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCGCATGTCTTCACTCTaGCTGCTTAGTTCCAAAGGG +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHRMSSL*LLSSKG
Trigger: CCCTTTGGAACTAAGCAGGCAGAGTGAAGACATGCG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACTGCCTCATATTCGGATaGGAATTCAGGGGCGTTGTC +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHCLIFG*EFRGVV
Trigger: GACAACGCCCCTGAATTCGCATCCGAATATGAGGCA...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp GCCAACAATTATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCTGCCTCATATTCGGATaGGAATTCAGGGGCGTTGTC +
Preference number: 4 (lower is better)
Translates to: ANNYIQRMVTVPCNLGGLCLIFG*EFRGVV
Trigger: GACAACGCCCCTGAATTCGCATCCGAATATGAGGCA...GAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATAATTGTTGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACAAACCCAGCCTCTTTTaGAGCGGCTCAAAATCCGCA +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHKPSLF*SGSKSA
Trigger: TGCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTT...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGACACCATCCTGGGCCTaGGCATCAGAAGTGATTTCG +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGTPSWA*ASEVIS
Trigger: CGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGT...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp TATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCCCCAATCTCTCCAGGACAAACATTTaGTTCCAAACCCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: YIQRMVTVPCNLGGLPNLSRTNI*FQTQPL
Trigger: AAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGA...GAGATTGGGGAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp TTGAGTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGCAGTCAGGGTCACTGTaGGTGTTGTGGTTCCAGACA +
Preference number: 4 (lower is better)
Translates to: LSWQSPPWNGLRTCEYFKQSGSL*VLWFQT
Trigger: TGTCTGGAACCACAACACTCACAGTGACCCTGACTG...CTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GCCAACAATTATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCTTATTGGACTGGAAGTaGTATCAGGGTCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: ANNYIQRMVTVPCNLGGLLLDWK*YQGHEL
Trigger: CAGCTCGTGACCCTGATATCACTTCCAGTCCAATAA...GAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATAATTGTTGGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCGTCGTCGTAGCGAATaGTGTTTTCTCGAACGTCTT +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHRRRSE*CFLERL
Trigger: AAGACGTTCGAGAAAACATCATTCGCTACGACGACG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCGCATGTCTTCACTCTaGCTGCTTAGTTCCAAAGGG +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGRMSSL*LLSSKG
Trigger: CCCTTTGGAACTAAGCAGGCAGAGTGAAGACATGCG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTGCCTCATATTCGGATaGGAATTCAGGGGCGTTGTC +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGCLIFG*EFRGVV
Trigger: GACAACGCCCCTGAATTCGCATCCGAATATGAGGCA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACACTGTTTCCATAAACTaGGTCGTCAGCATCAGTGGC +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHTVSIN*VVSISG
Trigger: GCCACTGATGCTGACGACCCAGTTTATGGAAACAGT...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GAAAATAGTCCAAAAGTTTCTCTGGGAAATGCTGTTCCTGTAATCACCAGTCACACACCATCCTGGGCCTaGGCATCAGAAGTGATTTCG +
Preference number: 4 (lower is better)
Translates to: ENSPKVSLGNAVPVITSHTPSWA*ASEVIS
Trigger: CGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGT...GTGACTGGTGATTACAGGAACAGCATTTCCCAGAGAAACTTTTGGACTATTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp ATGATGCATGCTAATATAGCAATTAAGGCGCCCATACTGAGTCCAATAGGAAGGCTTATAACACCATCCTaGGCCTGGGCATCAGAAGTG +
Preference number: 4 (lower is better)
Translates to: MMHANIAIKAPILSPIGRLITPS*AWASEV
Trigger: CACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAG...CCTTCCTATTGGACTCAGTATGGGCGCCTTAATTGCTATATTAGCATGCATCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCAGTGTGGCGGTCAATaGAAAACCTTATTGGACTGG +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHQCGGQ*KTLLDW
Trigger: CCAGTCCAATAAGGTTTTCCATTGACCGCCACACTG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCCTTTCCAGGTCAGTGTaGCGGTCAATGGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLLSRSV*RSMENL
Trigger: AAGGTTTTCCATTGACCGCCACACTGACCTGGAAAG...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACTCCAGGACAAACATTTaGTTCCAAACCCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHSRTNI*FQTQPL
Trigger: AAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGA...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp TCCCAATCTCTGACTGTGGCCGTCAGGATAATATCAAATATCCAAAGACTTCTACCTGGGCATCAGAAGTaGTTTCGAATAGTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: SQSLTVAVRIISNIQRLLPGHQK*FRIVLS
Trigger: GGACAGCACTATTCGAAATCACTTCTGATGCCCAGG...TAGAAGTCTTTGGATATTTGATATTATCCTGACGGCCACAGTCAGAGATTGGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCCTGGGCATCAGAAGTaGTTTCGAATAGTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQPGHQK*FRIVLS
Trigger: GGACAGCACTATTCGAAATCACTTCTGATGCCCAGG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp TTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTTGTCTTCACTCTGCCTaGTTAGTTCCAAAGGGGATC +
Preference number: 4 (lower is better)
Translates to: LLHLRGVTLEYYRMLSAICLHSA*LVPKGI
Trigger: GATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGACA...AATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGAAACCCAGCCTCTTTTaGAGCGGCTCAAAATCCGCA +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQKPSLF*SGSKSA
Trigger: TGCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGACTGTTTCCATAAACTaGGTCGTCAGCATCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGTVSIN*VVSISG
Trigger: GCCACTGATGCTGACGACCCAGTTTATGGAAACAGT...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp CAAATAGCCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATACACCATCCTGGGCCTaGGCATCAGAAGTGATTTCG +
Preference number: 4 (lower is better)
Translates to: QIATFVASKGSDPRILQNTPSWA*ASEVIS
Trigger: CGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGT...ATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGGCTATTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCTTATAACACCATCCTaGGCCTGGGCATCAGAAGTG +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQLITPS*AWASEV
Trigger: CACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp ATGATGCATGCTAATATAGCAATTAAGGCGCCCATACTGAGTCCAATAGGAAGGCAGTGTGGCGGTCAATaGAAAACCTTATTGGACTGG +
Preference number: 4 (lower is better)
Translates to: MMHANIAIKAPILSPIGRQCGGQ*KTLLDW
Trigger: CCAGTCCAATAAGGTTTTCCATTGACCGCCACACTG...CCTTCCTATTGGACTCAGTATGGGCGCCTTAATTGCTATATTAGCATGCATCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp CCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTCTTTCCAGGTCAGTGTaGCGGTCAATGGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: PHLLHLRGVTLEYYRMLSLSRSV*RSMENL
Trigger: AAGGTTTTCCATTGACCGCCACACTGACCTGGAAAG...ACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TCGACATCAACACCATTTGGAACTGGAGCAAGCCCTTGCCTTGGCATAAACTGCGTTGTTGACCATTTCTaGAAGAAGACTGTACAAGAA +
Preference number: 4 (lower is better)
Translates to: STSTPFGTGASPCLGINCVVDHF*KKTVQE
Trigger: TTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAAC...GCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCCCTGGGCATCAGAAGTaGTTTCGAATAGTGCTGTCC +
Preference number: 4 (lower is better)
Translates to: KETITSPLDNIACHTYLIPGHQK*FRIVLS
Trigger: GGACAGCACTATTCGAAATCACTTCTGATGCCCAGG...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTAAGGAGGTAAGTTGGTaGAGAGAAGACCGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETIKEVSW*REDRRL
Trigger: GAGCCTCCGGTCTTCTCTTCACCAACTTACCTCCTT...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp CTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCAAAATGTAAGGAGGTAAGTTGGTaGAGAGAAGACCGGAGGCTC +
Preference number: 4 (lower is better)
Translates to: LLPLPLIILPAILISSKCKEVSW*REDRRL
Trigger: GAGCCTCCGGTCTTCTCTTCACCAACTTACCTCCTT...ACATTTTGATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGTTATTGGACTGGAAGTaGTATCAGGGTCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQLLDWK*YQGHEL
Trigger: CAGCTCGTGACCCTGATATCACTTCCAGTCCAATAA...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCACTTACTGTTTGAATaGCTTGGCCGGGTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGHLLFE*LGRVFH
Trigger: ATGGAAAACCCGGCCAAGTCATTCAAACAGTAAGTG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp TTGAGTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGCGTCGTCGTAGCGAATaGTGTTTTCTCGAACGTCTT +
Preference number: 4 (lower is better)
Translates to: LSWQSPPWNGLRTCEYFKRRRSE*CFLERL
Trigger: AAGACGTTCGAGAAAACATCATTCGCTACGACGACG...CTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR TCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCGTCGTCGTAGCGAATaGTGTTTTCTCGAACGTCTT +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQRRRSE*CFLERL
Trigger: AAGACGTTCGAGAAAACATCATTCGCTACGACGACG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGTGTCTTCACTCTGCCTaGTTAGTTCCAAAGGGGATC +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQCLHSA*LVPKGI
Trigger: GATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGACA...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCCGCATGTCTTCACTCTaGCTGCTTAGTTCCAAAGGG +
Preference number: 4 (lower is better)
Translates to: LGEENLKHVYWVGHYVSIRMSSL*LLSSKG
Trigger: CCCTTTGGAACTAAGCAGGCAGAGTGAAGACATGCG...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCAAACCCAGCCTCTTTTaGAGCGGCTCAAAATCCGCA +
Preference number: 4 (lower is better)
Translates to: LGEENLKHVYWVGHYVSIKPSLF*SGSKSA
Trigger: TGCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTT...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TTGAGTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGACTGTTTCCATAAACTaGGTCGTCAGCATCAGTGGC +
Preference number: 4 (lower is better)
Translates to: LSWQSPPWNGLRTCEYFKTVSIN*VVSISG
Trigger: GCCACTGATGCTGACGACCCAGTTTATGGAAACAGT...CTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTACACCATCCTGGGCCTaGGCATCAGAAGTGATTTCG +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETITPSWA*ASEVIS
Trigger: CGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGT...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCTTATAACACCATCCTaGGCCTGGGCATCAGAAGTG +
Preference number: 4 (lower is better)
Translates to: YTFYSKETITSPLDNIACLITPS*AWASEV
Trigger: CACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAG...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTTCACGAGCTGTCACTTaGCCAATCACAGAGTTCAAA +
Preference number: 4 (lower is better)
Translates to: LLHLRGVTLEYYRMLSAISRAVT*PITEFK
Trigger: TTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGA...AATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp ATGATGCATGCTAATATAGCAATTAAGGCGCCCATACTGAGTCCAATAGGAAGGTCACGAGCTGTCACTTaGCCAATCACAGAGTTCAAA +
Preference number: 4 (lower is better)
Translates to: MMHANIAIKAPILSPIGRSRAVT*PITEFK
Trigger: TTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGA...CCTTCCTATTGGACTCAGTATGGGCGCCTTAATTGCTATATTAGCATGCATCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTCACGAGCTGTCACTTaGCCAATCACAGAGTTCAAA +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGSRAVT*PITEFK
Trigger: TTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCAGTGTGGCGGTCAATaGAAAACCTTATTGGACTGG +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQQCGGQ*KTLLDW
Trigger: CCAGTCCAATAAGGTTTTCCATTGACCGCCACACTG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCTTTCCAGGTCAGTGTaGCGGTCAATGGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQLSRSV*RSMENL
Trigger: AAGGTTTTCCATTGACCGCCACACTGACCTGGAAAG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp GGAAATGCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGAACACCATTTGGAACTaGAGCAAGCCCTTGCCTTGG +
Preference number: 4 (lower is better)
Translates to: GNAVPVITSHNYTFYSKENTIWN*SKPLPW
Trigger: CCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTT...CTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGCATTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp CATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGATTATAGCCATAAATCTGTATaGAGTCATATGGTGGGGCCG +
Preference number: 4 (lower is better)
Translates to: HLRGVTLEYYRMLSAIDYSHKSV*SHMVGP
Trigger: CGGCCCCACCATATGACTCCATACAGATTTATGGCT...ATAATCAATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp ATGCATAGTCCAGCAAGTTTGGCCTGCTTGAAAATCTCTAAATATTCCTTTTCACGCTGCTTTTCTTCCTaGCTGTGCCTGTTTCAGGCT +
Preference number: 4 (lower is better)
Translates to: MHSPASLACLKISKYSFSRCFSS*LCLFQA
Trigger: AGCCTGAAACAGGCACAGCCAGGAAGAAAAGCAGCG...TGAAAAGGAATATTTAGAGATTTTCAAGCAGGCCAAACTTGCTGGACTATGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR CAA 72 bp ATCGACATCAACACCATTTGGAACTGGAGCAAGCCCTaGCCTTGGCATAAACTGCAAATCTGGTTTAATATC +
Preference number: 4 (lower is better)
Translates to: IDINTIWNWSKP*PWHKLQIWFNI
Trigger: GATATTAAACCAGATTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp CATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGATTATTCCAGGACAAACATTTaGTTCCAAACCCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: HLRGVTLEYYRMLSAIDYSRTNI*FQTQPL
Trigger: AAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGA...ATAATCAATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGTCCAGGACAAACATTTaGTTCCAAACCCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQSRTNI*FQTQPL
Trigger: AAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGA...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTCCCATCTCCATCAATaGTGTCATAGGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGSHLHQ*CHRMIV
Trigger: CACAATCATCCTATGACATCATTGATGGAGATGGGA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATATTATTGGACTGGAAGTaGTATCAGGGTCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: LSTLKRLLPLPLIILPAILLDWK*YQGHEL
Trigger: CAGCTCGTGACCCTGATATCACTTCCAGTCCAATAA...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCTTGCTTCTGGCGGTTaGATCCATTATGTTTTGCCA +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQLASGG*IHYVLP
Trigger: TGGCAAAACATAATGGATTCAACCGCCAGAAGCAAG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATATGTCTTCACTCTGCCTaGTTAGTTCCAAAGGGGATC +
Preference number: 4 (lower is better)
Translates to: LSTLKRLLPLPLIILPAICLHSA*LVPKGI
Trigger: GATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGACA...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp ATGCATAGTCCAGCAAGTTTGGCCTGCTTGAAAATCTCTAAATATTCCTTTTCACGCATGTCTTCACTCTaGCTGCTTAGTTCCAAAGGG +
Preference number: 4 (lower is better)
Translates to: MHSPASLACLKISKYSFSRMSSL*LLSSKG
Trigger: CCCTTTGGAACTAAGCAGGCAGAGTGAAGACATGCG...TGAAAAGGAATATTTAGAGATTTTCAAGCAGGCCAAACTTGCTGGACTATGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR GCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGAGTGGTTCATTTTTGTaGCTCCTCAGGGTAACAAAC +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGSGSFL*LLRVTN
Trigger: GTTTGTTACCCTGAGGAGGCACAAAAATGAACCACT...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCACTGGAGCAAGCCCTTaGCTTGGCATAAACTGCAAA +
Preference number: 4 (lower is better)
Translates to: LGEENLKHVYWVGHYVSITGASP*LGINCK
Trigger: TTTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGT...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCGTGGGGTCATTATCTaGCTCATGCAGCCTTACATT +
Preference number: 4 (lower is better)
Translates to: YTFYSKETITSPLDNIACRGVII*LMQPYI
Trigger: AATGTAAGGCTGCATGAGGCAGATAATGACCCCACG...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp AACAGCCATTTCAGGGTTTCAAAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTTTTTCTTCCTGGCTGTaGCTGTTTCAGGCTCAATGG +
Preference number: 4 (lower is better)
Translates to: NSHFRVSKKVVKVAQSRTFSSWL*LFQAQW
Trigger: CCATTGAGCCTGAAACAGGCACAGCCAGGAAGAAAA...AGTCCTGCTTTGTGCTACTTTTACAACTTTCTTTGAAACCCTGAAATGGCTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CCA 90 bp AAATACCAACTGCTTTGGTATTTGGGCAAAACCTTATTAGCAGTTTTCCTAAGCAAACCCAGCCTCTTTTaGAGCGGCTCAAAATCCGCA +
Preference number: 4 (lower is better)
Translates to: KYQLLWYLGKTLLAVFLSKPSLF*SGSKSA
Trigger: TGCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTT...GCTTAGGAAAACTGCTAATAAGGTTTTGCCCAAATACCAAAGCAGTTGGTATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATAAACCCAGCCTCTTTTaGAGCGGCTCAAAATCCGCA +
Preference number: 4 (lower is better)
Translates to: YSKETITSPLDNIACHTYKPSLF*SGSKSA
Trigger: TGCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTT...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTTATAACACCATCCTaGGCCTGGGCATCAGAAGTG +
Preference number: 4 (lower is better)
Translates to: YSKETITSPLDNIACHTYLITPS*AWASEV
Trigger: CACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAG...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTCTTTGAAGTCACTGTaGTCCATAGTCCCTTTCTTC +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGSLKSL*SIVPFF
Trigger: GAAGAAAGGGACTATGGACCACAGTGACTTCAAAGA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp TTGAGTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGCACATCTTCTGGTACTaGGAAGTGATACAAACTCTG +
Preference number: 4 (lower is better)
Translates to: LSWQSPPWNGLRTCEYFKHIFWY*EVIQTL
Trigger: CAGAGTTTGTATCACTTCTCAGTACCAGAAGATGTG...CTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAACTCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp CATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGATTATCACATCTTCTGGTACTaGGAAGTGATACAAACTCTG +
Preference number: 4 (lower is better)
Translates to: HLRGVTLEYYRMLSAIDYHIFWY*EVIQTL
Trigger: CAGAGTTTGTATCACTTCTCAGTACCAGAAGATGTG...ATAATCAATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCACATCTTCTGGTACTaGGAAGTGATACAAACTCTG +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQHIFWY*EVIQTL
Trigger: CAGAGTTTGTATCACTTCTCAGTACCAGAAGATGTG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp ATAGCCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTTCCCATCTCCATCAATaGTGTCATAGGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: IATFVASKGSDPRILQNASHLHQ*CHRMIV
Trigger: CACAATCATCCTATGACATCATTGATGGAGATGGGA...AGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGGCTAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTTTATTGGACTGGAAGTaGTATCAGGGTCACGAGCTG +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETILLDWK*YQGHEL
Trigger: CAGCTCGTGACCCTGATATCACTTCCAGTCCAATAA...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCCACTTACTGTTTGAATaGCTTGGCCGGGTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: KETITSPLDNIACHTYLIHLLFE*LGRVFH
Trigger: ATGGAAAACCCGGCCAAGTCATTCAAACAGTAAGTG...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR TCA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCCTTGCTTCTGGCGGTTaGATCCATTATGTTTTGCCA +
Preference number: 4 (lower is better)
Translates to: LGEENLKHVYWVGHYVSILASGG*IHYVLP
Trigger: TGGCAAAACATAATGGATTCAACCGCCAGAAGCAAG...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR TCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCTTGCTTCTGGCGGTTaGATCCATTATGTTTTGCCA +
Preference number: 4 (lower is better)
Translates to: YTFYSKETITSPLDNIACLASGG*IHYVLP
Trigger: TGGCAAAACATAATGGATTCAACCGCCAGAAGCAAG...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGTGTCTTCACTCTGCCTaGTTAGTTCCAAAGGGGATC +
Preference number: 4 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMCLHSA*LVPKGI
Trigger: GATCCCCTTTGGAACTAAGCAGGCAGAGTGAAGACA...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR GCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTTATTTGAAAGATTGTaGCAGCTCCATCACCCGATA +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGLFERL*QLHHPI
Trigger: TATCGGGTGATGGAGCTGGCACAATCTTTCAAATAA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGGATGTGGATATTGGCTaGTTCCACCTTCAGAGTATA +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQDVDIG*FHLQSI
Trigger: TATACTCTGAAGGTGGAAGCAGCCAATATCCACATC...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGGACAATTTTGACTGTTaGTGTATCCTTAAAGGGTCC +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGDNFDC*CILKGS
Trigger: GGACCCTTTAAGGATACAGCAACAGTCAAAATTGTC...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATACTGTTTCCATAAACTaGGTCGTCAGCATCAGTGGC +
Preference number: 4 (lower is better)
Translates to: YSKETITSPLDNIACHTYTVSIN*VVSISG
Trigger: GCCACTGATGCTGACGACCCAGTTTATGGAAACAGT...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGACTGTTTCCATAAACTaGGTCGTCAGCATCAGTGGC +
Preference number: 4 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMTVSIN*VVSISG
Trigger: GCCACTGATGCTGACGACCCAGTTTATGGAAACAGT...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTCAGTGTGGCGGTCAATaGAAAACCTTATTGGACTGG +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETIQCGGQ*KTLLDW
Trigger: CCAGTCCAATAAGGTTTTCCATTGACCGCCACACTG...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTCTTTCCAGGTCAGTGTaGCGGTCAATGGAAAACCTT +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETILSRSV*RSMENL
Trigger: AAGGTTTTCCATTGACCGCCACACTGACCTGGAAAG...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGGTCAAAAATGTCCGTTTTTaGGATCGTCTTTGTCCATGG +
Preference number: 4 (lower is better)
Translates to: DAIQSLLSGANNYIQRMVKNVRF*DRLCPW
Trigger: CCATGGACAAAGACGATCCCAAAAACGGACATTTTT...GACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTAAAAATGTCCGTTTTTaGGATCGTCTTTGTCCATGG +
Preference number: 4 (lower is better)
Translates to: LLHLRGVTLEYYRMLSAIKNVRF*DRLCPW
Trigger: CCATGGACAAAGACGATCCCAAAAACGGACATTTTT...AATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCTTGATGGTGAAATTTaGGTTGTTGACCATTTCTGG +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGLDGEI*VVDHFW
Trigger: CCAGAAATGGTCAACAACCCAAATTTCACCATCAAG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGTCCAGGACAAACATTTaGTTCCAAACCCAGCCTCTT +
Preference number: 4 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMSRTNI*FQTQPL
Trigger: AAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGA...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR TCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTCACTTACTGTTTGAATaGCTTGGCCGGGTTTTCCAT +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETIHLLFE*LGRVFH
Trigger: ATGGAAAACCCGGCCAAGTCATTCAAACAGTAAGTG...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp CCCCAGATAATTAAGCATTTACTGGTTACTCGCCCAGCGTTTCATTTACACATTTTATTTGAAAGATTGTaGCAGCTCCATCACCCGATA +
Preference number: 4 (lower is better)
Translates to: PQIIKHLLVTRPAFHLHILFERL*QLHHPI
Trigger: TATCGGGTGATGGAGCTGGCACAATCTTTCAAATAA...AATGTGTAAATGAAACGCTGGGCGAGTAACCAGTAAATGCTTAATTATCTGGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR GCA 90 bp GATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGGTCACTGTAAACCAACTTTaGACTGTTTCCATAAACTGG +
Preference number: 4 (lower is better)
Translates to: DAIQSLLSGANNYIQRMVTVNQL*TVSINW
Trigger: CCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGT...GACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp ATGATGCATGCTAATATAGCAATTAAGGCGCCCATACTGAGTCCAATAGGAAGGACTGTAAACCAACTTTaGACTGTTTCCATAAACTGG +
Preference number: 4 (lower is better)
Translates to: MMHANIAIKAPILSPIGRTVNQL*TVSINW
Trigger: CCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGT...CCTTCCTATTGGACTCAGTATGGGCGCCTTAATTGCTATATTAGCATGCATCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATAGATGTGGATATTGGCTaGTTCCACCTTCAGAGTATA +
Preference number: 4 (lower is better)
Translates to: LSTLKRLLPLPLIILPAIDVDIG*FHLQSI
Trigger: TATACTCTGAAGGTGGAAGCAGCCAATATCCACATC...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCGATGTGGATATTGGCTaGTTCCACCTTCAGAGTATA +
Preference number: 4 (lower is better)
Translates to: YTFYSKETITSPLDNIACDVDIG*FHLQSI
Trigger: TATACTCTGAAGGTGGAAGCAGCCAATATCCACATC...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp GATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGGTCTATCTTCCCATCATCTaGATTGATGTTGAACTGTCT +
Preference number: 4 (lower is better)
Translates to: DAIQSLLSGANNYIQRMVYLPII*IDVELS
Trigger: AGACAGTTCAACATCAATGCAGATGATGGGAAGATA...GACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp CCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGAATCCATTATGTTTTaGCAGAATGCTCAGGGAATT +
Preference number: 4 (lower is better)
Translates to: PHLLHLRGVTLEYYRMLSESIMF*QNAQGI
Trigger: AATTCCCTGAGCATTCTGGCAAAACATAATGGATTC...ACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp GGAAATGCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGAGTGGTTCATTTTTGTaGCTCCTCAGGGTAACAAAC +
Preference number: 4 (lower is better)
Translates to: GNAVPVITSHNYTFYSKESGSFL*LLRVTN
Trigger: GTTTGTTACCCTGAGGAGGCACAAAAATGAACCACT...CTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGCATTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACACTCTGAGCAAATTTTaGAGGATTGTCATTAACATC +
Preference number: 4 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHTLSKF*RIVINI
Trigger: GATGTTAATGACAATCCTCCAAAATTTGCTCAGAGT...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTTCACGAGCTGTCACTTaGCCAATCACAGAGTTCAAA +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETISRAVT*PITEFK
Trigger: TTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGA...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGAATGGAAAACCTTATTaGACTGGAAGTGATATCAGG +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGNGKPY*TGSDIR
Trigger: CCTGATATCACTTCCAGTCCAATAAGGTTTTCCATT...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGAAAAATGTCCGTTTTTaGGATCGTCTTTGTCCATGG +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQKNVRF*DRLCPW
Trigger: CCATGGACAAAGACGATCCCAAAAACGGACATTTTT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp GCCAACAATTATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCTCCATTAATTCCATCTaGGTTTTGCAAAGTTGCAAT +
Preference number: 4 (lower is better)
Translates to: ANNYIQRMVTVPCNLGGLSINSI*VLQSCN
Trigger: ATTGCAACTTTGCAAAACCCAGATGGAATTAATGGA...GAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATAATTGTTGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp GATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGGTCCATAAACTGCAAATCTaGTTTAATATCCTTACGGGG +
Preference number: 4 (lower is better)
Translates to: DAIQSLLSGANNYIQRMVHKLQI*FNILTG
Trigger: CCCCGTAAGGATATTAAACCAGATTTGCAGTTTATG...GACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCATAAACTGCAAATCTaGTTTAATATCCTTACGGGG +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGHKLQI*FNILTG
Trigger: CCCCGTAAGGATATTAAACCAGATTTGCAGTTTATG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp ATAAAAACCATTTGCACTCATAAGAATCCTTACAGAAGACACATATCAGCAGCAGACATCAACACCATTTaGAACTGGAGCAAGCCCTTG +
Preference number: 4 (lower is better)
Translates to: IKTICTHKNPYRRHISAADINTI*NWSKPL
Trigger: CAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTC...TGCTGCTGATATGTGTCTTCTGTAAGGATTCTTATGAGTGCAAATGGTTTTTAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
3UTR CAA 72 bp CTATTTGAGAGAAATTATCTACTTGTGAAGTTGCTATaGAGGCTTGGCTGGCCTGAAACACATTCTTGCTCA +
Preference number: 4 (lower is better)
Translates to: LFERNYLLVKLL*RLGWPETHSCS
Trigger: TGAGCAAGAATGTGTTTCAGGCCAGCCAAGCCTCAATAGCAACTTCACAAGTAGATAATTTCTCTCAAATAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR TCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCACATCTTCTGGTACTaGGAAGTGATACAAACTCTG +
Preference number: 4 (lower is better)
Translates to: YSKETITSPLDNIACHTYHIFWY*EVIQTL
Trigger: CAGAGTTTGTATCACTTCTCAGTACCAGAAGATGTG...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR TCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTTCCCATCTCCATCAATaGTGTCATAGGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETISHLHQ*CHRMIV
Trigger: CACAATCATCCTATGACATCATTGATGGAGATGGGA...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp CCCCAGATAATTAAGCATTTACTGGTTACTCGCCCAGCGTTTCATTTACACATTACTGTAAACCAACTTTaGACTGTTTCCATAAACTGG +
Preference number: 4 (lower is better)
Translates to: PQIIKHLLVTRPAFHLHITVNQL*TVSINW
Trigger: CCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGT...AATGTGTAAATGAAACGCTGGGCGAGTAACCAGTAAATGCTTAATTATCTGGGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR GCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGACTGTAAACCAACTTTaGACTGTTTCCATAAACTGG +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQTVNQL*TVSINW
Trigger: CCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTGATGTGGATATTGGCTaGTTCCACCTTCAGAGTATA +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETIDVDIG*FHLQSI
Trigger: TATACTCTGAAGGTGGAAGCAGCCAATATCCACATC...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATAGACAATTTTGACTGTTaGTGTATCCTTAAAGGGTCC +
Preference number: 4 (lower is better)
Translates to: LSTLKRLLPLPLIILPAIDNFDC*CILKGS
Trigger: GGACCCTTTAAGGATACAGCAACAGTCAAAATTGTC...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp GGAAATGCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGGACAATTTTGACTGTTaGTGTATCCTTAAAGGGTCC +
Preference number: 4 (lower is better)
Translates to: GNAVPVITSHNYTFYSKEDNFDC*CILKGS
Trigger: GGACCCTTTAAGGATACAGCAACAGTCAAAATTGTC...CTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGCATTTCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCGACAATTTTGACTGTTaGTGTATCCTTAAAGGGTCC +
Preference number: 4 (lower is better)
Translates to: KETITSPLDNIACHTYLIDNFDC*CILKGS
Trigger: GGACCCTTTAAGGATACAGCAACAGTCAAAATTGTC...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGTATCTTCCCATCATCTaGATTGATGTTGAACTGTCT +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQYLPII*IDVELS
Trigger: AGACAGTTCAACATCAATGCAGATGATGGGAAGATA...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR GCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGGAATCCATTATGTTTTaGCAGAATGCTCAGGGAATT +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQESIMF*QNAQGI
Trigger: AATTCCCTGAGCATTCTGGCAAAACATAATGGATTC...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGGTTGTTGACCATTTCTaGAAGAAGACTGTACAAGAA +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQVVDHF*KKTVQE
Trigger: TTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAAC...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCCTTGATGGTGAAATTTaGGTTGTTGACCATTTCTGG +
Preference number: 4 (lower is better)
Translates to: KETITSPLDNIACHTYLILDGEI*VVDHFW
Trigger: CCAGAAATGGTCAACAACCCAAATTTCACCATCAAG...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTGATGGTGAAATTTaGGTTGTTGACCATTTCTGG +
Preference number: 4 (lower is better)
Translates to: LSTLKRLLPLPLIILPAILDGEI*VVDHFW
Trigger: CCAGAAATGGTCAACAACCCAAATTTCACCATCAAG...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTCCATTAATTCCATCTaGGTTTTGCAAAGTTGCAAT +
Preference number: 4 (lower is better)
Translates to: VKILPISTRSQRPLNIQGSINSI*VLQSCN
Trigger: ATTGCAACTTTGCAAAACCCAGATGGAATTAATGGA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp AACAGCCATTTCAGGGTTTCAAAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTCTGTTTTCTCACTGCTaGCTTCAAATTAGAGCTTCT +
Preference number: 4 (lower is better)
Translates to: NSHFRVSKKVVKVAQSRTLFSHC*LQIRAS
Trigger: AGAAGCTCTAATTTGAAGCCAGCAGTGAGAAAACAG...AGTCCTGCTTTGTGCTACTTTTACAACTTTCTTTGAAACCCTGAAATGGCTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR CAA 72 bp TGCTGTGTTCAATATCAGACAGTAACTGTTAAAATATaGCCCATATCCACACGGTCCCAGAGACCTTTAAAT +
Preference number: 4 (lower is better)
Translates to: CCVQYQTVTVKI*PISTRSQRPLN
Trigger: ATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAACACAGCA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR TCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCACTTACTGTTTGAATaGCTGATCTCAGTAGCAATG +
Preference number: 4 (lower is better)
Translates to: YSKETITSPLDNIACHTYHLLFE*LISVAM
Trigger: CATTGCTACTGAGATCAGTCATTCAAACAGTAAGTG...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTTTATTTGAAAGATTGTaGCAGCTCCATCACCCGATA +
Preference number: 4 (lower is better)
Translates to: AVPVITSHNYTFYSKETILFERL*QLHHPI
Trigger: TATCGGGTGATGGAGCTGGCACAATCTTTCAAATAA...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCACTGTAAACCAACTTTaGACTGTTTCCATAAACTGG +
Preference number: 4 (lower is better)
Translates to: YTFYSKETITSPLDNIACTVNQL*TVSINW
Trigger: CCAGTTTATGGAAACAGTGCAAAGTTGGTTTACAGT...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCTATCTTCCCATCATCTaGATTGATGTTGAACTGTCT +
Preference number: 4 (lower is better)
Translates to: YTFYSKETITSPLDNIACYLPII*IDVELS
Trigger: AGACAGTTCAACATCAATGCAGATGATGGGAAGATA...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCGAATCCATTATGTTTTaGCAGAATGCTCAGGGAATT +
Preference number: 4 (lower is better)
Translates to: KETITSPLDNIACHTYLIESIMF*QNAQGI
Trigger: AATTCCCTGAGCATTCTGGCAAAACATAATGGATTC...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp ACATTTATAAATTCATCGACATCAACACCATTTGGAACTGGAGCAAGCCCTTGCACTCTGAGCAAATTTTaGAGGATTGTCATTAACATC +
Preference number: 4 (lower is better)
Translates to: TFINSSTSTPFGTGASPCTLSKF*RIVINI
Trigger: GATGTTAATGACAATCCTCCAAAATTTGCTCAGAGT...GCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGACTCTGAGCAAATTTTaGAGGATTGTCATTAACATC +
Preference number: 4 (lower is better)
Translates to: VQYQTVTVKILPISTRSQTLSKF*RIVINI
Trigger: GATGTTAATGACAATCCTCCAAAATTTGCTCAGAGT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CCA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCAATGGAAAACCTTATTaGACTGGAAGTGATATCAGG +
Preference number: 4 (lower is better)
Translates to: KETITSPLDNIACHTYLINGKPY*TGSDIR
Trigger: CCTGATATCACTTCCAGTCCAATAAGGTTTTCCATT...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp AAAGATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGAATGGAAAACCTTATTaGACTGGAAGTGATATCAGG +
Preference number: 4 (lower is better)
Translates to: KDAIQSLLSGANNYIQRMNGKPY*TGSDIR
Trigger: CCTGATATCACTTCCAGTCCAATAAGGTTTTCCATT...CATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATCTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATAAATGGAAAACCTTATTaGACTGGAAGTGATATCAGG +
Preference number: 4 (lower is better)
Translates to: LSTLKRLLPLPLIILPAINGKPY*TGSDIR
Trigger: CCTGATATCACTTCCAGTCCAATAAGGTTTTCCATT...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATAAAAATGTCCGTTTTTaGGATCGTCTTTGTCCATGG +
Preference number: 4 (lower is better)
Translates to: YSKETITSPLDNIACHTYKNVRF*DRLCPW
Trigger: CCATGGACAAAGACGATCCCAAAAACGGACATTTTT...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCGTTGTTGACCATTTCTaGAAGAAGACTGTACAAGAA +
Preference number: 4 (lower is better)
Translates to: LGEENLKHVYWVGHYVSIVVDHF*KKTVQE
Trigger: TTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAAC...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCGTTGTTGACCATTTCTaGAAGAAGACTGTACAAGAA +
Preference number: 4 (lower is better)
Translates to: YTFYSKETITSPLDNIACVVDHF*KKTVQE
Trigger: TTCTTGTACAGTCTTCTTCCAGAAATGGTCAACAAC...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp ATAAAAACCATTTGCACTCATAAGAATCCTTACAGAAGACACATATCAGCAGCATTATTTGAAAGATTGTaGCAGCTCCATCACCCGATA +
Preference number: 4 (lower is better)
Translates to: IKTICTHKNPYRRHISAALFERL*QLHHPI
Trigger: TATCGGGTGATGGAGCTGGCACAATCTTTCAAATAA...TGCTGCTGATATGTGTCTTCTGTAAGGATTCTTATGAGTGCAAATGGTTTTTAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR GCA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATTGCCTTGGCATAAACTaGAAATCTGGTTTAATATCC +
Preference number: 4 (lower is better)
Translates to: YSKETITSPLDNIACHTYCLGIN*KSGLIS
Trigger: GGATATTAAACCAGATTTGCAGTTTATGCCAAGGCA...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CCA 90 bp GGAAATGCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTCTGAGCAAATTTTaGAGGATTGTCATTAACATC +
Preference number: 4 (lower is better)
Translates to: GNAVPVITSHNYTFYSKETLSKF*RIVINI
Trigger: GATGTTAATGACAATCCTCCAAAATTTGCTCAGAGT...CTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGCATTTCC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CCA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCTCCATTAATTCCATCTaGGTTTTGCAAAGTTGCAAT +
Preference number: 4 (lower is better)
Translates to: LGEENLKHVYWVGHYVSISINSI*VLQSCN
Trigger: ATTGCAACTTTGCAAAACCCAGATGGAATTAATGGA...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR GCA 90 bp ATAAAAACCATTTGCACTCATAAGAATCCTTACAGAAGACACATATCAGCAGCATATCTTCCCATCATCTaGATTGATGTTGAACTGTCT +
Preference number: 4 (lower is better)
Translates to: IKTICTHKNPYRRHISAAYLPII*IDVELS
Trigger: AGACAGTTCAACATCAATGCAGATGATGGGAAGATA...TGCTGCTGATATGTGTCTTCTGTAAGGATTCTTATGAGTGCAAATGGTTTTTAT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CAA 72 bp ACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATaGCCTGCCATACTTATCTCATCAAAATGTACATGT +
Preference number: 4 (lower is better)
Translates to: TLKRLLPLPLII*PAILISSKCTC
Trigger: ACATGTACATTTTGATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CAA 72 bp ACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTaGATAATATTGCCTGCCATACTTATCTCATCAAAA +
Preference number: 4 (lower is better)
Translates to: TLSTLKRLLPLP*IILPAILISSK
Trigger: TTTTGATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
3UTR CAA 72 bp ACCTTATTAGCAGTTTTCCTAAGCACAAACTGCCACTaGTTATACTGCCATCACATTTTTAGAACTCTTTCT +
Preference number: 4 (lower is better)
Translates to: TLLAVFLSTNCH*LYCHHIFRTLS
Trigger: AGAAAGAGTTCTAAAAATGTGATGGCAGTATAACAAGTGGCAGTTTGTGCTTAGGAAAACTGCTAATAAGGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
3UTR CAA 72 bp TCTGTTTCAGCATTCCATGAAGACTCCATTATTATCTaGATTTTTCTAAAAGGGAGCCATTCATTACATGGT +
Preference number: 4 (lower is better)
Translates to: SVSAFHEDSIII*IFLKGSHSLHG
Trigger: ACCATGTAATGAATGGCTCCCTTTTAGAAAAATCAAGATAATAATGGAGTCTTCATGGAATGCTGAAACAGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CAA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCAAACCCAGCCTCTTTaGGAGCGGCTCAAAATCCGC +
Preference number: 5 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHQTQPL*ERLKIR
Trigger: GCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTTG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TTGAATGGCATTTCTCTCCTCCCACCTTTGAGTTGGCAATCCCCACCCTGGAATTGTCCACCCATATCTTaGGCTTGTATTACGACCAGG +
Preference number: 5 (lower is better)
Translates to: LNGISLLPPLSWQSPPWNCPPIS*ACITTR
Trigger: CCTGGTCGTAATACAAGCCAAAGATATGGGTGGACA...ATTCCAGGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGAAATGCCATTCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GGAGGCCTCCCCAATCTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCCTTCAAGGAGGTAAGTaGGTGAAGAGAAGACCGGAG +
Preference number: 5 (lower is better)
Translates to: GGLPNLHKVITYSRPKYCLQGGK*VKRRPE
Trigger: CTCCGGTCTTCTCTTCACCAACTTACCTCCTTGAAG...GCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAGATTGGGGAGGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GGAGGCCTCCCCAATCTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCCGACATCAACACCATTaGGAACTGGAGCAAGCCCTT +
Preference number: 5 (lower is better)
Translates to: GGLPNLHKVITYSRPKYCRHQHH*ELEQAL
Trigger: AAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCG...GCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAGATTGGGGAGGCCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS CCA 90 bp TCAAAGTCCAGAGGCTTTCTCAGTCTTATAACACCATCCTGGGCCTaGGCATCAGAAGTGATTTCGAATAGTGCTGTCCCATCTCCATCA +
Preference number: 5 (lower is better)
Translates to: SKSRGFLSLITPSWA*ASEVISNSAVPSPS
Trigger: TGATGGAGATGGGACAGCACTATTCGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAGACTGAGAAAGCCTCTGGACTTTGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CCA 90 bp TTGGTCTCAAAGTCCAGAGGCTTTCTCAGTCTTATAACACCATCCTaGGCCTGGGCATCAGAAGTGATTTCGAATAGTGCTGTCCCATCT +
Preference number: 5 (lower is better)
Translates to: LVSKSRGFLSLITPS*AWASEVISNSAVPS
Trigger: AGATGGGACAGCACTATTCGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAGACTGAGAAAGCCTCTGGACTTTGAGACCAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTCAAACCCAGCCTCTTTaGGAGCGGCTCAAAATCCGC +
Preference number: 5 (lower is better)
Translates to: LLHLRGVTLEYYRMLSAIQTQPL*ERLKIR
Trigger: GCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTTG...AATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCAAACCCAGCCTCTTTaGGAGCGGCTCAAAATCCGC +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGQTQPL*ERLKIR
Trigger: GCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTTG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TCCCAATCTCTGACTGTGGCCGTCAGGATAATATCAAATATCCAAAGACTTCTATGGACCACGCCATCATaGCTACAGCCACAGACTCGG +
Preference number: 5 (lower is better)
Translates to: SQSLTVAVRIISNIQRLLWTTPS*LQPQTR
Trigger: CCGAGTCTGTGGCTGTAGCAATGATGGCGTGGTCCA...TAGAAGTCTTTGGATATTTGATATTATCCTGACGGCCACAGTCAGAGATTGGGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGTGGACCACGCCATCATaGCTACAGCCACAGACTCGG +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQWTTPS*LQPQTR
Trigger: CCGAGTCTGTGGCTGTAGCAATGATGGCGTGGTCCA...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGGGTCGATGTGGATATaGGCTGCTTCCACCTTCAGA +
Preference number: 5 (lower is better)
Translates to: LLHLRGVTLEYYRMLSAIGSMWI*AASTFR
Trigger: TCTGAAGGTGGAAGCAGCCAATATCCACATCGACCC...AATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGGGGTCGATGTGGATATaGGCTGCTTCCACCTTCAGA +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGGSMWI*AASTFR
Trigger: TCTGAAGGTGGAAGCAGCCAATATCCACATCGACCC...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
47% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCTTCAAGGAGGTAAGTaGGTGAAGAGAAGACCGGAG +
Preference number: 5 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHLQGGK*VKRRPE
Trigger: CTCCGGTCTTCTCTTCACCAACTTACCTCCTTGAAG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTGGCAATCCCCACCCTGGAATGGATTACGAACATGTGAATATTTTAAGGCTCCTCTGTCCAGTGGAGTaGCCAGTGTTATCTTCCCAT +
Preference number: 5 (lower is better)
Translates to: VGNPHPGMDYEHVNILRLLCPVE*PVLSSH
Trigger: ATGGGAAGATAACACTGGCAACTCCACTGGACAGAG...GAGCCTTAAAATATTCACATGTTCGTAATCCATTCCAGGGTGGGGATTGCCAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GGAGGCCTCCCCAATCTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCTCTTGCTTCTGGCGGTaGAATCCATTATGTTTTGCC +
Preference number: 5 (lower is better)
Translates to: GGLPNLHKVITYSRPKYCSCFWR*NPLCFA
Trigger: GGCAAAACATAATGGATTCAACCGCCAGAAGCAAGA...GCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAGATTGGGGAGGCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCAGAAGGTAGACTTCTaGCTTCTGGCGGTTGAATCC +
Preference number: 5 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHQKVDF*LLAVES
Trigger: GGATTCAACCGCCAGAAGCAAGAAGTCTACCTTCTG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp GGAGGCCTCCCCAATCTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCCTGGGTTTTGCAAAGTaGCAATGTCAAAAGCCTCTG +
Preference number: 5 (lower is better)
Translates to: GGLPNLHKVITYSRPKYCLGFAK*QCQKPL
Trigger: CAGAGGCTTTTGACATTGCAACTTTGCAAAACCCAG...GCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAGATTGGGGAGGCCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCTCTCTCCTCCCACCTTaGAGTTGGCAATCCCCACCG +
Preference number: 5 (lower is better)
Translates to: KETITSPLDNIACHTYLISLLPP*SWQSPP
Trigger: CGGTGGGGATTGCCAACTCAAAGGTGGGAGGAGAGA...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000093249.11
CDS-3UTR CAA 90 bp AAAGATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGCAAACCCAGCCTCTTTaGGAGCGGCTCAAAATCCGC +
Preference number: 5 (lower is better)
Translates to: KDAIQSLLSGANNYIQRMQTQPL*ERLKIR
Trigger: GCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTTG...CATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GGAGGCCTCCCCAATCTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCTCTCGGTCAAGTCTTTaGATAGCATGGATATCTCCA +
Preference number: 5 (lower is better)
Translates to: GGLPNLHKVITYSRPKYCSRSSL*IAWISP
Trigger: TGGAGATATCCATGCTATCAAAAGACTTGACCGAGA...GCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAGATTGGGGAGGCCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACTGTCCACCCATATCTTaGGCTTGTATTACGACCAGG +
Preference number: 5 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHCPPIS*ACITTR
Trigger: CCTGGTCGTAATACAAGCCAAAGATATGGGTGGACA...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCTTCAAGGAGGTAAGTaGGTGAAGAGAAGACCGGAG +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGLQGGK*VKRRPE
Trigger: CTCCGGTCTTCTCTTCACCAACTTACCTCCTTGAAG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGGTCACGAGCTGTCACTaGGCCAATCACAGAGTTCAA +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGVTSCH*ANHRVQ
Trigger: TTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGAC...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCTCTGTCCAGTGGAGTaGCCAGTGTTATCTTCCCAT +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGLCPVE*PVLSSH
Trigger: ATGGGAAGATAACACTGGCAACTCCACTGGACAGAG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATTGGACCACGCCATCATaGCTACAGCCACAGACTCGG +
Preference number: 5 (lower is better)
Translates to: YSKETITSPLDNIACHTYWTTPS*LQPQTR
Trigger: CCGAGTCTGTGGCTGTAGCAATGATGGCGTGGTCCA...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp AAGAAAGTTGTAAAAGTAGCACAAAGCAGGACTGGGTGTTCATTACTTATGATGCAAACCCAGCCTCTTTaGGAGCGGCTCAAAATCCGC +
Preference number: 5 (lower is better)
Translates to: KKVVKVAQSRTGCSLLMMQTQPL*ERLKIR
Trigger: GCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTTG...CATCATAAGTAATGAACACCCAGTCCTGCTTTGTGCTACTTTTACAACTTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTGTCCACCCATATCTTaGGCTTGTATTACGACCAGG +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGCPPIS*ACITTR
Trigger: CCTGGTCGTAATACAAGCCAAAGATATGGGTGGACA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCGGGTCGATGTGGATATaGGCTGCTTCCACCTTCAGA +
Preference number: 5 (lower is better)
Translates to: YTFYSKETITSPLDNIACGSMWI*AASTFR
Trigger: TCTGAAGGTGGAAGCAGCCAATATCCACATCGACCC...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCCCCAATCTCTTTTTGGGATCGTCTTaGTCCATGGCACTTACTGTT +
Preference number: 5 (lower is better)
Translates to: YIQRMVTVPCNLGGLPNLFLGSS*SMALTV
Trigger: AACAGTAAGTGCCATGGACAAAGACGATCCCAAAAA...GAGATTGGGGAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GGAGGCCTCCCCAATCTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCGTGAAATTTGGGTTGTaGACCATTTCTGGAAGAAGA +
Preference number: 5 (lower is better)
Translates to: GGLPNLHKVITYSRPKYCVKFGL*TISGRR
Trigger: TCTTCTTCCAGAAATGGTCAACAACCCAAATTTCAC...GCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAGATTGGGGAGGCCTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCAGAAGGTAGACTTCTaGCTTCTGGCGGTTGAATCC +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQQKVDF*LLAVES
Trigger: GGATTCAACCGCCAGAAGCAAGAAGTCTACCTTCTG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TCACATCTTCTAGTGCTGATCTGCTTTTGTAGTCTAAGACGTTCTGCGCATCACCTGGGTTTTGCAAAGTaGCAATGTCAAAAGCCTCTG +
Preference number: 5 (lower is better)
Translates to: SHLLVLICFCSLRRSAHHLGFAK*QCQKPL
Trigger: CAGAGGCTTTTGACATTGCAACTTTGCAAAACCCAG...GTGATGCGCAGAACGTCTTAGACTACAAAAGCAGATCAGCACTAGAAGATGTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp CATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTGATTATAACTGGAGCAAGCCCTaGCCTTGGCATAAACTGCAA +
Preference number: 5 (lower is better)
Translates to: HLRGVTLEYYRMLSAIDYNWSKP*PWHKLQ
Trigger: TTGCAGTTTATGCCAAGGCAAGGGCTTGCTCCAGTT...ATAATCAATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp CCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTTTCCAGGACAAACATTaGATTCCAAACCCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: PHLLHLRGVTLEYYRMLSFQDKH*IPNPAS
Trigger: AGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAA...ACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTTCCAGGACAAACATTaGATTCCAAACCCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGFQDKH*IPNPAS
Trigger: AGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTGGGTCGATGTGGATATaGGCTGCTTCCACCTTCAGA +
Preference number: 5 (lower is better)
Translates to: AVPVITSHNYTFYSKETIGSMWI*AASTFR
Trigger: TCTGAAGGTGGAAGCAGCCAATATCCACATCGACCC...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GGAAATGCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGGTCACGAGCTGTCACTaGGCCAATCACAGAGTTCAA +
Preference number: 5 (lower is better)
Translates to: GNAVPVITSHNYTFYSKEVTSCH*ANHRVQ
Trigger: TTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGAC...CTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGCATTTCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCCTCTGTCCAGTGGAGTaGCCAGTGTTATCTTCCCAT +
Preference number: 5 (lower is better)
Translates to: LGEENLKHVYWVGHYVSILCPVE*PVLSSH
Trigger: ATGGGAAGATAACACTGGCAACTCCACTGGACAGAG...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GCCAACAATTATATACAACGTATGGTCACCGTACCATGTAATCTAGGAGGCCTCTACTGTTTGAATGACTaGGCCGGGTTTTCCATTTTC +
Preference number: 5 (lower is better)
Translates to: ANNYIQRMVTVPCNLGGLYCLND*AGFSIF
Trigger: GAAAATGGAAAACCCGGCCAAGTCATTCAAACAGTA...GAGGCCTCCTAGATTACATGGTACGGTGACCATACGTTGTATATAATTGTTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTCTTGCTTCTGGCGGTaGAATCCATTATGTTTTGCC +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGSCFWR*NPLCFA
Trigger: GGCAAAACATAATGGATTCAACCGCCAGAAGCAAGA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGCTGGGTTTTGCAAAGTaGCAATGTCAAAAGCCTCTG +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGLGFAK*QCQKPL
Trigger: CAGAGGCTTTTGACATTGCAACTTTGCAAAACCCAG...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp CCCCAGATAATTAAGCATTTACTGGTTACTCGCCCAGCGTTTCATTTACACATTCATTTATTTGAAAGATaGTGCCAGCTCCATCACCCG +
Preference number: 5 (lower is better)
Translates to: PQIIKHLLVTRPAFHLHIHLFER*CQLHHP
Trigger: CGGGTGATGGAGCTGGCACAATCTTTCAAATAAATG...AATGTGTAAATGAAACGCTGGGCGAGTAACCAGTAAATGCTTAATTATCTGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CAA 90 bp ACATTTATAAATTCATCGACATCAACACCATTTGGAACTGGAGCAAGCCCTTGCCATTTATTTGAAAGATaGTGCCAGCTCCATCACCCG +
Preference number: 5 (lower is better)
Translates to: TFINSSTSTPFGTGASPCHLFER*CQLHHP
Trigger: CGGGTGATGGAGCTGGCACAATCTTTCAAATAAATG...GCAAGGGCTTGCTCCAGTTCCAAATGGTGTTGATGTCGATGAATTTATAAATGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGCATTTATTTGAAAGATaGTGCCAGCTCCATCACCCG +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQHLFER*CQLHHP
Trigger: CGGGTGATGGAGCTGGCACAATCTTTCAAATAAATG...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTTCTCGGTCAAGTCTTTaGATAGCATGGATATCTCCA +
Preference number: 5 (lower is better)
Translates to: LLHLRGVTLEYYRMLSAISRSSL*IAWISP
Trigger: TGGAGATATCCATGCTATCAAAAGACTTGACCGAGA...AATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp CCACATTTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTACCCATATCTTTGGCTaGTATTACGACCAGGTATTC +
Preference number: 5 (lower is better)
Translates to: PHLLHLRGVTLEYYRMLSTHIFG*YYDQVF
Trigger: GAATACCTGGTCGTAATACAAGCCAAAGATATGGGT...ACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAAATGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATATGTCCACCCATATCTTaGGCTTGTATTACGACCAGG +
Preference number: 5 (lower is better)
Translates to: LSTLKRLLPLPLIILPAICPPIS*ACITTR
Trigger: CCTGGTCGTAATACAAGCCAAAGATATGGGTGGACA...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTCTTCAAGGAGGTAAGTaGGTGAAGAGAAGACCGGAG +
Preference number: 5 (lower is better)
Translates to: AVPVITSHNYTFYSKETILQGGK*VKRRPE
Trigger: CTCCGGTCTTCTCTTCACCAACTTACCTCCTTGAAG...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATGTCACGAGCTGTCACTaGGCCAATCACAGAGTTCAA +
Preference number: 5 (lower is better)
Translates to: YSKETITSPLDNIACHTYVTSCH*ANHRVQ
Trigger: TTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGAC...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGGTCTTCCCATCATCTGCATaGATGTTGAACTGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: DAIQSLLSGANNYIQRMVFPSSA*MLNCLS
Trigger: GGAAAGACAGTTCAACATCAATGCAGATGATGGGAA...GACCATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTTCCCATCATCTGCATaGATGTTGAACTGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGFPSSA*MLNCLS
Trigger: GGAAAGACAGTTCAACATCAATGCAGATGATGGGAA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp CTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCAAAATGTCTCTGTCCAGTGGAGTaGCCAGTGTTATCTTCCCAT +
Preference number: 5 (lower is better)
Translates to: LLPLPLIILPAILISSKCLCPVE*PVLSSH
Trigger: ATGGGAAGATAACACTGGCAACTCCACTGGACAGAG...ACATTTTGATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGTTTTTGGGATCGTCTTaGTCCATGGCACTTACTGTT +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGFLGSS*SMALTV
Trigger: AACAGTAAGTGCCATGGACAAAGACGATCCCAAAAA...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GAAAATAGTCCAAAAGTTTCTCTGGGAAATGCTGTTCCTGTAATCACCAGTCACTCTTGCTTCTGGCGGTaGAATCCATTATGTTTTGCC +
Preference number: 5 (lower is better)
Translates to: ENSPKVSLGNAVPVITSHSCFWR*NPLCFA
Trigger: GGCAAAACATAATGGATTCAACCGCCAGAAGCAAGA...GTGACTGGTGATTACAGGAACAGCATTTCCCAGAGAAACTTTTGGACTATTTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCAGAAGGTAGACTTCTaGCTTCTGGCGGTTGAATCC +
Preference number: 5 (lower is better)
Translates to: YSKETITSPLDNIACHTYQKVDF*LLAVES
Trigger: GGATTCAACCGCCAGAAGCAAGAAGTCTACCTTCTG...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGATAAGTGGTTCATTTTaGTGCCTCCTCAGGGTAACA +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGISGSF*CLLRVT
Trigger: TGTTACCCTGAGGAGGCACAAAAATGAACCACTTAT...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTAGACACAGCCTGTTaGAATGGCATTTCTCTCCTC +
Preference number: 5 (lower is better)
Translates to: LSTLKRLLPLPLIILPAILDTAC*NGISLL
Trigger: GAGGAGAGAAATGCCATTCAAACAGGCTGTGTCTAG...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000093249.11
CDS-3UTR CAA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACATTTATTTGAAAGATaGTGCCAGCTCCATCACCCG +
Preference number: 5 (lower is better)
Translates to: LSTLKRLLPLPLIILPAIHLFER*CQLHHP
Trigger: CGGGTGATGGAGCTGGCACAATCTTTCAAATAAATG...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp CCCCAGATAATTAAGCATTTACTGGTTACTCGCCCAGCGTTTCATTTACACATTTCTCGGTCAAGTCTTTaGATAGCATGGATATCTCCA +
Preference number: 5 (lower is better)
Translates to: PQIIKHLLVTRPAFHLHISRSSL*IAWISP
Trigger: TGGAGATATCCATGCTATCAAAAGACTTGACCGAGA...AATGTGTAAATGAAACGCTGGGCGAGTAACCAGTAAATGCTTAATTATCTGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGTCTCGGTCAAGTCTTTaGATAGCATGGATATCTCCA +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQSRSSL*IAWISP
Trigger: TGGAGATATCCATGCTATCAAAAGACTTGACCGAGA...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGACCCATATCTTTGGCTaGTATTACGACCAGGTATTC +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQTHIFG*YYDQVF
Trigger: GAATACCTGGTCGTAATACAAGCCAAAGATATGGGT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGTACTGTTTGAATGACTaGGCCGGGTTTTCCATTTTC +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQYCLND*AGFSIF
Trigger: GAAAATGGAAAACCCGGCCAAGTCATTCAAACAGTA...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GAAAATAGTCCAAAAGTTTCTCTGGGAAATGCTGTTCCTGTAATCACCAGTCACTTTTTGGGATCGTCTTaGTCCATGGCACTTACTGTT +
Preference number: 5 (lower is better)
Translates to: ENSPKVSLGNAVPVITSHFLGSS*SMALTV
Trigger: AACAGTAAGTGCCATGGACAAAGACGATCCCAAAAA...GTGACTGGTGATTACAGGAACAGCATTTCCCAGAGAAACTTTTGGACTATTTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp ACGAGCAGCAAAATGATGCATGCTAATATAGCAATTAAGGCGCCCATACTGAGTGTGAAATTTGGGTTGTaGACCATTTCTGGAAGAAGA +
Preference number: 5 (lower is better)
Translates to: TSSKMMHANIAIKAPILSVKFGL*TISGRR
Trigger: TCTTCTTCCAGAAATGGTCAACAACCCAAATTTCAC...ACTCAGTATGGGCGCCTTAATTGCTATATTAGCATGCATCATTTTGCTGCTCGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTAAAATATTGCCCATATCCACACGGTCCCAGAGACCTTTAAATATACAGGGGGTGAAATTTGGGTTGTaGACCATTTCTGGAAGAAGA +
Preference number: 5 (lower is better)
Translates to: VKILPISTRSQRPLNIQGVKFGL*TISGRR
Trigger: TCTTCTTCCAGAAATGGTCAACAACCCAAATTTCAC...CCCCTGTATATTTAAAGGTCTCTGGGACCGTGTGGATATGGGCAATATTTTAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp GCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGACTATTTTCCAGGACAAACATTaGATTCCAAACCCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: AVPVITSHNYTFYSKETIFQDKH*IPNPAS
Trigger: AGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAA...AATAGTCTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp CTCCATAAAGTCATAACGTACAGCAGACCAAAGTATTGCTTTATCATTTGTGACTTCCAGGACAAACATTaGATTCCAAACCCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: LHKVITYSRPKYCFIICDFQDKH*IPNPAS
Trigger: AGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAA...GTCACAAATGATAAAGCAATACTTTGGTCTGCTGTACGTTATGACTTTATGGAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCTCTCGGTCAAGTCTTTaGATAGCATGGATATCTCCA +
Preference number: 5 (lower is better)
Translates to: KETITSPLDNIACHTYLISRSSL*IAWISP
Trigger: TGGAGATATCCATGCTATCAAAAGACTTGACCGAGA...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCACCCATATCTTTGGCTaGTATTACGACCAGGTATTC +
Preference number: 5 (lower is better)
Translates to: YTFYSKETITSPLDNIACTHIFG*YYDQVF
Trigger: GAATACCTGGTCGTAATACAAGCCAAAGATATGGGT...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp AAAGATGCTATTCAGTCTCTGTTGAGTGGGGCCAACAATTATATACAACGTATGACCCATATCTTTGGCTaGTATTACGACCAGGTATTC +
Preference number: 5 (lower is better)
Translates to: KDAIQSLLSGANNYIQRMTHIFG*YYDQVF
Trigger: GAATACCTGGTCGTAATACAAGCCAAAGATATGGGT...CATACGTTGTATATAATTGTTGGCCCCACTCAACAGAGACTGAATAGCATCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp AAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCTTCCCATCATCTGCATaGATGTTGAACTGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: KETITSPLDNIACHTYLIFPSSA*MLNCLS
Trigger: GGAAAGACAGTTCAACATCAATGCAGATGATGGGAA...GATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATATACTGTTTGAATGACTaGGCCGGGTTTTCCATTTTC +
Preference number: 5 (lower is better)
Translates to: LSTLKRLLPLPLIILPAIYCLND*AGFSIF
Trigger: GAAAATGGAAAACCCGGCCAAGTCATTCAAACAGTA...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp GGAAATGCTGTTCCTGTAATCACCAGTCACAATTACACTTTCTACTCTAAAGAGTTTTTGGGATCGTCTTaGTCCATGGCACTTACTGTT +
Preference number: 5 (lower is better)
Translates to: GNAVPVITSHNYTFYSKEFLGSS*SMALTV
Trigger: AACAGTAAGTGCCATGGACAAAGACGATCCCAAAAA...CTCTTTAGAGTAGAAAGTGTAATTGTGACTGGTGATTACAGGAACAGCATTTCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGATGGTGAAATTTGGGTaGTTGACCATTTCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQMVKFG*LTISGR
Trigger: TCTTCCAGAAATGGTCAACAACCCAAATTTCACCAT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCATAAGTGGTTCATTTTaGTGCCTCCTCAGGGTAACA +
Preference number: 5 (lower is better)
Translates to: LGEENLKHVYWVGHYVSIISGSF*CLLRVT
Trigger: TGTTACCCTGAGGAGGCACAAAAATGAACCACTTAT...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp TTGTTGCATCTAAGGGGAGTGACCCTAGAATATTACAGAATGCTCAGTGCCATTAATTCCATCTGGGTTTaGCAAAGTTGCAATGTCAAA +
Preference number: 5 (lower is better)
Translates to: LLHLRGVTLEYYRMLSAINSIWV*QSCNVK
Trigger: TTTGACATTGCAACTTTGCAAAACCCAGATGGAATT...AATGGCACTGAGCATTCTGTAATATTCTAGGGTCACTCCCCTTAGATGCAACAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000128860.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGACCTCTCCTTTCCTTTaGAAGTCCTGGCTTATTTTT +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQTSPFL*KSWLIF
Trigger: AAAAATAAGCCAGGACTTCAAAAGGAAAGGAGAGGT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp ATACCTCACACAACCAGGTATCTGAGTGTAGAGGTAATAAATATGCATGTATTATTCCAGGACAAACATTaGATTCCAAACCCAGCCTCT +
Preference number: 5 (lower is better)
Translates to: IPHTTRYLSVEVINMHVLFQDKH*IPNPAS
Trigger: AGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGGAA...TAATACATGCATATTTATTACCTCTACACTCAGATACCTGGTTGTGTGAGGTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142475.3
CDS-3UTR CAA 90 bp TACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATTTCCCATCATCTGCATaGATGTTGAACTGTCTTTCC +
Preference number: 5 (lower is better)
Translates to: YSKETITSPLDNIACHTYFPSSA*MLNCLS
Trigger: GGAAAGACAGTTCAACATCAATGCAGATGATGGGAA...ATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TACACTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCGTGAAATTTGGGTTGTaGACCATTTCTGGAAGAAGA +
Preference number: 5 (lower is better)
Translates to: YTFYSKETITSPLDNIACVKFGL*TISGRR
Trigger: TCTTCTTCCAGAAATGGTCAACAACCCAAATTTCAC...GCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAGTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp CTTTCTACTCTAAAGAGACTATTACCTCTCCCCTTGATAATATTGCCTGCCATAATGGTGAAATTTGGGTaGTTGACCATTTCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: LSTLKRLLPLPLIILPAIMVKFG*LTISGR
Trigger: TCTTCCAGAAATGGTCAACAACCCAAATTTCACCAT...TATGGCAGGCAATATTATCAAGGGGAGAGGTAATAGTCTCTTTAGAGTAGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TCTGCCTCATGCAGCCTTACATTTATAAATTCATCGACATCAACACCATTTGGAATGGTGAAATTTGGGTaGTTGACCATTTCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: SASCSLTFINSSTSTPFGMVKFG*LTISGR
Trigger: TCTTCCAGAAATGGTCAACAACCCAAATTTCACCAT...TCCAAATGGTGTTGATGTCGATGAATTTATAAATGTAAGGCTGCATGAGGCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp GTTCAATATCAGACAGTAACTGTTAAAATATTGCCCATATCCACACGGTCCCAGAATTCCATCTGGGTTTaGCAAAGTTGCAATGTCAAA +
Preference number: 5 (lower is better)
Translates to: VQYQTVTVKILPISTRSQNSIWV*QSCNVK
Trigger: TTTGACATTGCAACTTTGCAAAACCCAGATGGAATT...CTGGGACCGTGTGGATATGGGCAATATTTTAACAGTTACTGTCTGATATTGAAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155527.8
CDS-3UTR CAA 90 bp CTATTACCTCTCCCCTTGATAATATTGCCTGCCATACTTATCTCATCAAAATGTATGGTGAAATTTGGGTaGTTGACCATTTCTGGAAGA +
Preference number: 5 (lower is better)
Translates to: LLPLPLIILPAILISSKCMVKFG*LTISGR
Trigger: TCTTCCAGAAATGGTCAACAACCCAAATTTCACCAT...ACATTTTGATGAGATAAGTATGGCAGGCAATATTATCAAGGGGAGAGGTAATAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000145601.8
CDS-3UTR CAA 90 bp TTGGGAGAGGAAAATTTGAAGCATGTTTATTGGGTGGGGCATTATGTAAGTATCAATTCCATCTGGGTTTaGCAAAGTTGCAATGTCAAA +
Preference number: 5 (lower is better)
Translates to: LGEENLKHVYWVGHYVSINSIWV*QSCNVK
Trigger: TTTGACATTGCAACTTTGCAAAACCCAGATGGAATT...GATACTTACATAATGCCCCACCCAATAAACATGCTTCAAATTTTCCTCTCCCAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
CDS TCA 72 bp GGCTCAAGGGGCTTGTTTGTCTCAAAGTCCACTGCCTaGGCCGTTAACGTATATTCAGCCTTTTCCTCTCGG +
Preference number: 6 (lower is better)
Translates to: GSRGLFVSKSTA*AVNVYSAFSSR
Trigger: CCGAGAGGAAAAGGCTGAATATACGTTAACGGCTCAGGCAGTGGACTTTGAGACAAACAAGCCCCTTGAGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000142475.3
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CCA 72 bp CCAGGACAAACATTTGATTCCAAACCCAGCCTCTTTTaGAGCGGCTCAAAATCCGCATGTCTTCACTCTGCC +
Preference number: 6 (lower is better)
Translates to: PGQTFDSKPSLF*SGSKSACLHSA
Trigger: GGCAGAGTGAAGACATGCGGATTTTGAGCCGCTCCAAAAGAGGCTGGGTTTGGAATCAAATGTTTGTCCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000142475.3
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CAA 90 bp GGTGAAGAGAAGACCGGAGGCTCATCAGCATCCTCTACGACAATTTaGACTGTTGCTGTATCCTTAAAGGGTCCCCTGCTACTGAAACGT +
Preference number: 6 (lower is better)
Translates to: GEEKTGGSSASSTTI*TVAVSLKGPLLLKR
Trigger: ACGTTTCAGTAGCAGGGGACCCTTTAAGGATACAGCAACAGTCAAAATTGTCGTAGAGGATGCTGATGAGCCTCCGGTCTTCTCTTCACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CCA 72 bp AGAGGCTTTCTCAGTCTTATAACACCATCCTGGGCCTaGGCATCAGAAGTGATTTCGAATAGTGCTGTCCCA +
Preference number: 6 (lower is better)
Translates to: RGFLSLITPSWA*ASEVISNSAVP
Trigger: TGGGACAGCACTATTCGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAGACTGAGAAAGCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CAA 72 bp AGTGGAGTTGCCAGTGTTATCTTCCCATCATCTGCATaGATGTTGAACTGTCTTTCCAGGTCAGTGTGGCGG +
Preference number: 6 (lower is better)
Translates to: SGVASVIFPSSA*MLNCLSRSVWR
Trigger: CCGCCACACTGACCTGGAAAGACAGTTCAACATCAATGCAGATGATGGGAAGATAACACTGGCAACTCCACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS GCA 72 bp GTCCAGTGGAGTTGCCAGTGTTATCTTCCCATCATCTaGATTGATGTTGAACTGTCTTTCCAGGTCAGTGTG +
Preference number: 6 (lower is better)
Translates to: VQWSCQCYLPII*IDVELSFQVSV
Trigger: CACACTGACCTGGAAAGACAGTTCAACATCAATGCAGATGATGGGAAGATAACACTGGCAACTCCACTGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CCA 72 bp AAGTCCAGAGGCTTTCTCAGTCTTATAACACCATCCTaGGCCTGGGCATCAGAAGTGATTTCGAATAGTGCT +
Preference number: 6 (lower is better)
Translates to: KSRGFLSLITPS*AWASEVISNSA
Trigger: AGCACTATTCGAAATCACTTCTGATGCCCAGGCCCAGGATGGTGTTATAAGACTGAGAAAGCCTCTGGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CAA 72 bp TGGACTGGAAGTGATATCAGGGTCACGAGCTGTCACTaGGCCAATCACAGAGTTCAAAGCAGCATTTTCATG +
Preference number: 6 (lower is better)
Translates to: WTGSDIRVTSCH*ANHRVQSSIFM
Trigger: CATGAAAATGCTGCTTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGACCCTGATATCACTTCCAGTCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CAA 72 bp GTTGCCAGTGTTATCTTCCCATCATCTGCATTGATGTaGAACTGTCTTTCCAGGTCAGTGTGGCGGTCAATG +
Preference number: 6 (lower is better)
Translates to: VASVIFPSSALM*NCLSRSVWRSM
Trigger: CATTGACCGCCACACTGACCTGGAAAGACAGTTCAACATCAATGCAGATGATGGGAAGATAACACTGGCAAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS TCA 72 bp TCCTATCGCAGTGCCAAGGACCACATCTTCTGGTACTaGGAAGTGATACAAACTCTGAGCAAATTTTGGAGG +
Preference number: 6 (lower is better)
Translates to: SYRSAKDHIFWY*EVIQTLSKFWR
Trigger: CCTCCAAAATTTGCTCAGAGTTTGTATCACTTCTCAGTACCAGAAGATGTGGTCCTTGGCACTGCGATAGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS TCA 72 bp TCCAGCACTTTAATAGCAACAGGCACTCGAGATATCTaGCTGTGGTTCCTGATCTCAGTAGCAATGATGGTG +
Preference number: 6 (lower is better)
Translates to: SSTLIATGTRDI*LWFLISVAMMV
Trigger: CACCATCATTGCTACTGAGATCAGGAACCACAGTCAGATATCTCGAGTGCCTGTTGCTATTAAAGTGCTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000155527.8
CDS CCA 72 bp TCTGCATTGATGTTGAACTGTCTTTCCAGGTCAGTGTaGCGGTCAATGGAAAACCTTATTGGACTGGAAGTG +
Preference number: 6 (lower is better)
Translates to: SALMLNCLSRSV*RSMENLIGLEV
Trigger: CACTTCCAGTCCAATAAGGTTTTCCATTGACCGCCACACTGACCTGGAAAGACAGTTCAACATCAATGCAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8
CDS CAA 72 bp CTGTGGTTCCTGATCTCAGTAGCAATGATGGTGATGTaGTGCCAAACACTTAGTTCTCTGTCCAGTGGAGTT +
Preference number: 6 (lower is better)
Translates to: LWFLISVAMMVM*CQTLSSLSSGV
Trigger: AACTCCACTGGACAGAGAACTAAGTGTTTGGCACAACATCACCATCATTGCTACTGAGATCAGGAACCACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000155527.8
CDS CAA 90 bp AAACCTTATTGGACTGGAAGTGATATCAGGGTCACGAGCTGTCACTaGGCCAATCACAGAGTTCAAAGCAGCATTTTCATGAACTTCAAG +
Preference number: 6 (lower is better)
Translates to: KPYWTGSDIRVTSCH*ANHRVQSSIFMNFK
Trigger: CTTGAAGTTCATGAAAATGCTGCTTTGAACTCTGTGATTGGCCAAGTGACAGCTCGTGACCCTGATATCACTTCCAGTCCAATAAGGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000093249.11
ENSMUST00000128860.8
ENSMUST00000142129.8
ENSMUST00000145601.8
ENSMUST00000155527.8