Pregenerated sensors for CDCA7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055612Ensembl transcript IDs: ENSMUST00000102691.11, ENSMUST00000157019.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAGATCCAACTGAGCACCACAGACAGAGTACAGAGTAGGCACAGCTaGCAGGCTACACAGGTGAGGGACTCAGTCACTTCGTCACCAGTA | + |
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Preference number: 1 (lower is better) Translates to: KIQLSTTDRVQSRHS*QATQVRDSVTSSPV Trigger: TACTGGTGACGAAGTGACTGAGTCCCTCACCTGTGTAGCCTGTCAGCTGTGCCTACTCTGTACTCTGTCTGTGGTGCTCAGTTGGATCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR TCA 90 bp | GCAATTTTTAGTAATTATGGTACCAAGTTCCCACAAACCTTTGGGTaGCTGGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCTGTGAC | + |
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Preference number: 1 (lower is better) Translates to: AIFSNYGTKFPQTFG*LGRPDDSSNSVSCD Trigger: GTCACAGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAGTCACCCAAAGGTTTGTGGGAACTTGGTACCATAATTACTAAAAATTGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CCA 90 bp | TTTTTAGTAATTATGGTACCAAGTTCCCACAAACCTTTGGGTGACTaGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCTGTGACAAGA | + |
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Preference number: 1 (lower is better) Translates to: FLVIMVPSSHKPLGD*VGQMTAATVSAVTR Trigger: TCTTGTCACAGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAGTCACCCAAAGGTTTGTGGGAACTTGGTACCATAATTACTAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR TCA 90 bp | GTTGCTTCACAATACTACTGTACCCCAAAGTGCTTGGGTATGTCCTaGTCACACAAATTCTCAAGCTGCCAGTTAAAGATAGCTCAGAAT | + |
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Preference number: 1 (lower is better) Translates to: VASQYYCTPKCLGMS*SHKFSSCQLKIAQN Trigger: ATTCTGAGCTATCTTTAACTGGCAGCTTGAGAATTTGTGTGATCAGGACATACCCAAGCACTTTGGGGTACAGTAGTATTGTGAAGCAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CCA 90 bp | AACAACTACCTAATTCTTCCTCATGGTTTCCGGCCCTTTGTGCCTTaGCCCTTTCCATTTAAAACATTAGCCAATATAAACACTAGACAC | + |
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Preference number: 1 (lower is better) Translates to: NNYLILPHGFRPFVP*PFPFKTLANINTRH Trigger: GTGTCTAGTGTTTATATTGGCTAATGTTTTAAATGGAAAGGGCCAAGGCACAAAGGGCCGGAAACCATGAGGAAGAATTAGGTAGTTGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR-3UTR CCA 90 bp | AAGACGTACACTGAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCCCTAATTCTTCCTCATaGTTTCCGGCCCTTTGTGCC | + |
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Preference number: 2 (lower is better) Translates to: KTYTEHSTPEMYSSRKPSPNSSS*FPALCA Trigger: GGCACAAAGGGCCGGAAACCATGAGGAAGAATTAGG...GGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTCAGTGTACGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR-3UTR TCA 90 bp | AAGACGTACACTGAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCGTAGCATGCCTTTCATaGTGCTTCAGAAACAAGTGT | + |
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Preference number: 2 (lower is better) Translates to: KTYTEHSTPEMYSSRKPSVACLS*CFRNKC Trigger: ACACTTGTTTCTGAAGCATCATGAAAGGCATGCTAC...GGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTCAGTGTACGTCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR-3UTR GCA 90 bp | CTGGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCTGTGACAAGACGTACACTCACAAATTCTCAAGCTaGCAGTTAAAGATAGCTCAG | + |
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Preference number: 2 (lower is better) Translates to: LGRPDDSSNSVSCDKTYTHKFSS*QLKIAQ Trigger: CTGAGCTATCTTTAACTGGCAGCTTGAGAATTTGTG...AGTGTACGTCTTGTCACAGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR-3UTR CCA 90 bp | CCCATAAACTACACTGGCAGAGAGGTTCAAAGCTACCCATCTCTAAAAGGCCACTCAGAATCTAAGTGGTaGCAAAAGACCAGGGAGGCT | + |
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Preference number: 2 (lower is better) Translates to: PINYTGREVQSYPSLKGHSESKW*QKTREA Trigger: AGCCTCCCTGGTCTTTTGCCACCACTTAGATTCTGA...GTGGCCTTTTAGAGATGGGTAGCTTTGAACCTCTCTGCCAGTGTAGTTTATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CAA 90 bp | CTACAGCAATTTTTAGTAATTATGGTACCAAGTTCCCACAAACCTTaGGGTGACTGGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: LQQFLVIMVPSSHKP*GDWVGQMTAATVSA Trigger: AGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAGTCACCCAAAGGTTTGTGGGAACTTGGTACCATAATTACTAAAAATTGCTGTAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR-3UTR CCA 90 bp | CCTAAATATATAGAAACCCTGGACACAACCCCCAGGGTTACCTCTTTAGGAAACAGCTCAGAATCTAAGTaGTGGCAAAAGACCAGGGAG | + |
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Preference number: 2 (lower is better) Translates to: PKYIETLDTTPRVTSLGNSSESK*WQKTRE Trigger: CTCCCTGGTCTTTTGCCACCACTTAGATTCTGAGCT...GTTTCCTAAAGAGGTAACCCTGGGGGTTGTGTCCAGGGTTTCTATATATTTAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR-3UTR TCA 90 bp | CCTAAATATATAGAAACCCTGGACACAACCCCCAGGGTTACCTCTTTAGGAAACTTAAGGTTAAGTTCCTaGAGCAGAACACCAAGGTTT | + |
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Preference number: 2 (lower is better) Translates to: PKYIETLDTTPRVTSLGNLRLSS*SRTPRF Trigger: AAACCTTGGTGTTCTGCTTCAGGAACTTAACCTTAA...GTTTCCTAAAGAGGTAACCCTGGGGGTTGTGTCCAGGGTTTCTATATATTTAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR TCA 72 bp | CTGAATGACCCACCTGTAGGGAAAGGGGAGGGAGGGTaGCTTCAGGCACCCACCCATAAACTACACTGGCAG | + |
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Preference number: 3 (lower is better) Translates to: LNDPPVGKGEGG*LQAPTHKLHWQ Trigger: CTGCCAGTGTAGTTTATGGGTGGGTGCCTGAAGTCACCCTCCCTCCCCTTTCCCTACAGGTGGGTCATTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CCA 72 bp | AAGCTGCCAGTTAAAGATAGCTCAGAATCTAAGTGGTaGCAAAAGACCAGGGAGGCTACAAGGTGGGGCCGG | + |
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Preference number: 3 (lower is better) Translates to: KLPVKDSSESKW*QKTREATRWGR Trigger: CCGGCCCCACCTTGTAGCCTCCCTGGTCTTTTGCCACCACTTAGATTCTGAGCTATCTTTAACTGGCAGCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CCA 72 bp | CTCAAGCTGCCAGTTAAAGATAGCTCAGAATCTAAGTaGTGGCAAAAGACCAGGGAGGCTACAAGGTGGGGC | + |
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Preference number: 3 (lower is better) Translates to: LKLPVKDSSESK*WQKTREATRWG Trigger: GCCCCACCTTGTAGCCTCCCTGGTCTTTTGCCACCACTTAGATTCTGAGCTATCTTTAACTGGCAGCTTGAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CCA 72 bp | ATTATGGTACCAAGTTCCCACAAACCTTTGGGTGACTaGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCT | + |
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Preference number: 3 (lower is better) Translates to: IMVPSSHKPLGD*VGQMTAATVSA Trigger: AGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAGTCACCCAAAGGTTTGTGGGAACTTGGTACCATAAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR TCA 72 bp | AGTAATTATGGTACCAAGTTCCCACAAACCTTTGGGTaGCTGGGTAGGCCAGATGACAGCAGCAACAGTGTC | + |
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Preference number: 3 (lower is better) Translates to: SNYGTKFPQTFG*LGRPDDSSNSV Trigger: GACACTGTTGCTGCTGTCATCTGGCCTACCCAGTCACCCAAAGGTTTGTGGGAACTTGGTACCATAATTACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CCA 72 bp | CCGTTGCTTCACAATACTACTGTACCCCAAAGTGCTTaGGTATGTCCTGATCACACAAATTCTCAAGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: PLLHNTTVPQSA*VCPDHTNSQAA Trigger: GGCAGCTTGAGAATTTGTGTGATCAGGACATACCCAAGCACTTTGGGGTACAGTAGTATTGTGAAGCAACGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR TCA 72 bp | AGTAGCATGCCTTTCATGATGCTTCAGAAACAAGTGTaGGATACGAGATCAACGCGACCAAGTTCTAAGGCA | + |
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Preference number: 3 (lower is better) Translates to: SSMPFMMLQKQV*DTRSTRPSSKA Trigger: TGCCTTAGAACTTGGTCGCGTTGATCTCGTATCTCACACTTGTTTCTGAAGCATCATGAAAGGCATGCTACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR TCA 72 bp | CAATACTACTGTACCCCAAAGTGCTTGGGTATGTCCTaGTCACACAAATTCTCAAGCTGCCAGTTAAAGATA | + |
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Preference number: 3 (lower is better) Translates to: QYYCTPKCLGMS*SHKFSSCQLKI Trigger: TATCTTTAACTGGCAGCTTGAGAATTTGTGTGATCAGGACATACCCAAGCACTTTGGGGTACAGTAGTATTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR GCA 90 bp | CTGGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCTGTGACAAGACGTACACTAGAATTGGCCCCGGATaGCCCAGCAGTCTGGGTTTC | + |
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Preference number: 4 (lower is better) Translates to: LGRPDDSSNSVSCDKTYTRIGPG*PSSLGF Trigger: GAAACCCAGACTGCTGGGGCATCCGGGGCCAATTCT...AGTGTACGTCTTGTCACAGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | GACTGGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCTGTGACAAGACGTACAGAATCTTTGGCTCTGTaGCCTGGGAGGGAATGTCGT | + |
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Preference number: 4 (lower is better) Translates to: DWVGQMTAATVSAVTRRTESLAL*PGRECR Trigger: ACGACATTCCCTCCCAGGCCACAGAGCCAAAGATTC...TGTACGTCTTGTCACAGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAGTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | CTGGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCTGTGACAAGACGTACACTGATGCCCCAGCAGTCTaGGTTTCGGCAGTTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: LGRPDDSSNSVSCDKTYTDAPAV*VSAVGF Trigger: AAAACCAACTGCCGAAACCCAGACTGCTGGGGCATC...AGTGTACGTCTTGTCACAGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | TTAAAGATAGCTCAGAATCTAAGTGGTGGCAAAAGACCAGGGAGGCTACAAGGTCAGGGACCACAGAATTaGCCCCGGATGCCCCAGCAG | + |
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Preference number: 4 (lower is better) Translates to: LKIAQNLSGGKRPGRLQGQGPQN*PRMPQQ Trigger: CTGCTGGGGCATCCGGGGCCAATTCTGTGGTCCCTG...ACCTTGTAGCCTCCCTGGTCTTTTGCCACCACTTAGATTCTGAGCTATCTTTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR GCA 90 bp | GAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCAATGTGGCCATACCTCCGGGTATTTCGTaGCGGAAACTTCATTGCTAC | + |
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Preference number: 4 (lower is better) Translates to: EHSTPEMYSSRKPSNVAIPPGIS*RKLHCY Trigger: GTAGCAATGAAGTTTCCGGCACGAAATACCCGGAGG...TATGGCCACATTGGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR GCA 90 bp | AAGACGTACACTGAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCGGCAGAAGCTGCAGTTaGAAATTCCTCGACAAGGTG | + |
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Preference number: 4 (lower is better) Translates to: KTYTEHSTPEMYSSRKPSGRSCS*KFLDKV Trigger: CACCTTGTCGAGGAATTTGCAACTGCAGCTTCTGCC...GGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTCAGTGTACGTCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR GCA 90 bp | CTGGGTAGGCCAGATGACAGCAGCAACAGTGTCAGCTGTGACAAGACGTACACTGAAGCCATGATACTTTaGCAGATACACCAGGACTCC | + |
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Preference number: 4 (lower is better) Translates to: LGRPDDSSNSVSCDKTYTEAMIL*QIHQDS Trigger: GGAGTCCTGGTGTATCTGGCAAAGTATCATGGCTTC...AGTGTACGTCTTGTCACAGCTGACACTGTTGCTGCTGTCATCTGGCCTACCCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | CACAACCGTTGCTTCACAATACTACTGTACCCCAAAGTGCTTGGGTATGTCCTGGCGACTTTGAATCTTTaGCTCTGTGGCCTGGGAGGG | + |
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Preference number: 4 (lower is better) Translates to: HNRCFTILLYPKVLGYVLATLNL*LCGLGG Trigger: CCCTCCCAGGCCACAGAGCCAAAGATTCAAAGTCGC...CAGGACATACCCAAGCACTTTGGGGTACAGTAGTATTGTGAAGCAACGGTTGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR TCA 90 bp | CCTAAATATATAGAAACCCTGGACACAACCCCCAGGGTTACCTCTTTAGGAAACCAGGATCCGGGACCTTaGCCTGGTAAGAGGTCGAGT | + |
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Preference number: 4 (lower is better) Translates to: PKYIETLDTTPRVTSLGNQDPGP*PGKRSS Trigger: ACTCGACCTCTTACCAGGTCAAGGTCCCGGATCCTG...GTTTCCTAAAGAGGTAACCCTGGGGGTTGTGTCCAGGGTTTCTATATATTTAGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | AAGACGTACACTGAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCTCTTCAGAGTCAGAGTaGGAATCGTTTGCAGAGCTC | + |
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Preference number: 4 (lower is better) Translates to: KTYTEHSTPEMYSSRKPSSSESE*ESFAEL Trigger: GAGCTCTGCAAACGATTCCCACTCTGACTCTGAAGA...GGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTCAGTGTACGTCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR GCA 90 bp | AAATATATAGAAACCCTGGACACAACCCCCAGGGTTACCTCTTTAGGAAACTGCGCTGGCGGCAGAAGCTaGAGTTGCAAATTCCTCGAC | + |
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Preference number: 4 (lower is better) Translates to: KYIETLDTTPRVTSLGNCAGGRS*SCKFLD Trigger: GTCGAGGAATTTGCAACTGCAGCTTCTGCCGCCAGC...GCAGTTTCCTAAAGAGGTAACCCTGGGGGTTGTGTCCAGGGTTTCTATATATTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | ACTCCAGTTTACAACAACTACCTAATTCTTCCTCATGGTTTCCGGCCCTTTGTGTTTGGCTCTGTGGCCTaGGAGGGAATGTCGTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: TPVYNNYLILPHGFRPFVFGSVA*EGMSSR Trigger: TCTGGACGACATTCCCTCCCAGGCCACAGAGCCAAA...CACAAAGGGCCGGAAACCATGAGGAAGAATTAGGTAGTTGTTGTAAACTGGAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | CCCATAAACTACACTGGCAGAGAGGTTCAAAGCTACCCATCTCTAAAAGGCCACAATTCCTCGACAAGGTaGGCAGTGCCAATTCGGATC | + |
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Preference number: 4 (lower is better) Translates to: PINYTGREVQSYPSLKGHNSSTR*AVPIRI Trigger: GATCCGAATTGGCACTGCCCACCTTGTCGAGGAATT...GTGGCCTTTTAGAGATGGGTAGCTTTGAACCTCTCTGCCAGTGTAGTTTATGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | AAGTGTTTAAAACCTAAATATATAGAAACCCTGGACACAACCCCCAGGGTTACCTCTGGTAGCCACACCTaGGAATGTGCGTCGTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: KCLKPKYIETLDTTPRVTSGSHT*ECASSR Trigger: CCTAGACGACGCACATTCCCAGGTGTGGCTACCAGA...GGTAACCCTGGGGGTTGTGTCCAGGGTTTCTATATATTTAGGTTTTAAACACTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR GCA 90 bp | AAGACGTACACTGAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCTCTCCAGAAAGTTCATaGCATCTTCTTCTTCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: KTYTEHSTPEMYSSRKPSSPESS*HLLLLL Trigger: AAGAAGAAGAAGAAGATGGCATGAACTTTCTGGAGA...GGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTCAGTGTACGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR GCA 90 bp | ACTCCAGTTTACAACAACTACCTAATTCTTCCTCATGGTTTCCGGCCCTTTGTGACTGGTCGGATTATATaGGGAAGGGTCATGGATCCA | + |
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Preference number: 4 (lower is better) Translates to: TPVYNNYLILPHGFRPFVTGRII*GRVMDP Trigger: TGGATCCATGACCCTTCCGCATATAATCCGACCAGT...CACAAAGGGCCGGAAACCATGAGGAAGAATTAGGTAGTTGTTGTAAACTGGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | ACTCCAGTTTACAACAACTACCTAATTCTTCCTCATGGTTTCCGGCCCTTTGTGTTCGGCAGTTGGTTTTaGTGTCAGTGGTTTTCTGGC | + |
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Preference number: 4 (lower is better) Translates to: TPVYNNYLILPHGFRPFVFGSWF*CQWFSG Trigger: GCCAGAAAACCACTGACACCAAAACCAACTGCCGAA...CACAAAGGGCCGGAAACCATGAGGAAGAATTAGGTAGTTGTTGTAAACTGGAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | AAATATATAGAAACCCTGGACACAACCCCCAGGGTTACCTCTTTAGGAAACTGCCTGGGTTTCGGCAGTTaGTTTTGGTGTCAGTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: KYIETLDTTPRVTSLGNCLGFGS*FWCQWF Trigger: AAACCACTGACACCAAAACCAACTGCCGAAACCCAG...GCAGTTTCCTAAAGAGGTAACCCTGGGGGTTGTGTCCAGGGTTTCTATATATTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | AGAGGTTCAAAGCTACCCATCTCTAAAAGGCCACTTCCCATCATTCCAAAAGTGTGGTTTTGGTGTCAGTaGTTTTCTGGCGACACTGAT | + |
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Preference number: 4 (lower is better) Translates to: RGSKLPISKRPLPIIPKVWFWCQ*FSGDTD Trigger: ATCAGTGTCGCCAGAAAACCACTGACACCAAAACCA...CACTTTTGGAATGATGGGAAGTGGCCTTTTAGAGATGGGTAGCTTTGAACCTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| 3UTR CAA 72 bp | TTTTTAGTAATTATGGTACCAAGTTCCCACAAACCTTaGGGTGACTGGGTAGGCCAGATGACAGCAGCAACA | + |
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Preference number: 4 (lower is better) Translates to: FLVIMVPSSHKP*GDWVGQMTAAT Trigger: TGTTGCTGCTGTCATCTGGCCTACCCAGTCACCCAAAGGTTTGTGGGAACTTGGTACCATAATTACTAAAAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CCA 90 bp | TTAAAGATAGCTCAGAATCTAAGTGGTGGCAAAAGACCAGGGAGGCTACAAGGTTGTGACTTCTTCTACTaGTCGGATTATATGCGGAAG | + |
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Preference number: 4 (lower is better) Translates to: LKIAQNLSGGKRPGRLQGCDFFY*SDYMRK Trigger: CTTCCGCATATAATCCGACCAGTAGAAGAAGTCACA...ACCTTGTAGCCTCCCTGGTCTTTTGCCACCACTTAGATTCTGAGCTATCTTTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS TCA 90 bp | TTCCTCGGTGGGCAGGGCACCCAAGGAGCCCAGGATCCGGGACCTTaGCCTGGTAAGAGGTCGAGTTCTCCGTTCCGGGTTCCTTCTGGT | + |
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Preference number: 5 (lower is better) Translates to: FLGGQGTQGAQDPGP*PGKRSSSPFRVPSG Trigger: ACCAGAAGGAACCCGGAACGGAGAACTCGACCTCTTACCAGGTCAAGGTCCCGGATCCTGGGCTCCTTGGGTGCCCTGCCCACCGAGGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS CCA 90 bp | TGTACTTATCCTCTTCCTCCTCCTCTTCCTCCTCCTCTTCCTCGGTaGGCAGGGCACCCAAGGAGCCCAGGATCCGGGACCTTGACCTGG | + |
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Preference number: 5 (lower is better) Translates to: CTYPLPPPLPPPLPR*AGHPRSPGSGTLTW Trigger: CCAGGTCAAGGTCCCGGATCCTGGGCTCCTTGGGTGCCCTGCCCACCGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGGATAAGTACA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | CTGAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCAATGTGGCCATACTTTGAGAGCCTTTaGCCGCGCGCGGCGAGCCTC | + |
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Preference number: 5 (lower is better) Translates to: LSTAPQRCIPPESHPMWPYFESL*PRAASL Trigger: GAGGCTCGCCGCGCGCGGCAAAAGGCTCTCAAAGTA...TGGCCACATTGGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | CACAACCGTTGCTTCACAATACTACTGTACCCCAAAGTGCTTGGGTATGTCCTGGGCGACTTTGAATCTTaGGCTCTGTGGCCTGGGAGG | + |
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Preference number: 5 (lower is better) Translates to: HNRCFTILLYPKVLGYVLGDFES*ALWPGR Trigger: CCTCCCAGGCCACAGAGCCAAAGATTCAAAGTCGCC...CAGGACATACCCAAGCACTTTGGGGTACAGTAGTATTGTGAAGCAACGGTTGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | GAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCAATGTGGCCATATCTGGGTTTCGGCAGTaGGTTTTGGTGTCAGTGGTT | + |
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Preference number: 5 (lower is better) Translates to: EHSTPEMYSSRKPSNVAISGFRQ*VLVSVV Trigger: AACCACTGACACCAAAACCAACTGCCGAAACCCAGA...TATGGCCACATTGGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS GCA 90 bp | TTCCTAATCTCTTCCTCTGTGACTTCTTCTACTGGTCGGATTATATaGGGAAGGGTCATGGATCCAGGCCTCCGACTTCTGGGCACATCA | + |
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Preference number: 5 (lower is better) Translates to: FLISSSVTSSTGRII*GRVMDPGLRLLGTS Trigger: TGATGTGCCCAGAAGTCGGAGGCCTGGATCCATGACCCTTCCGCATATAATCCGACCAGTAGAAGAAGTCACAGAGGAAGAGATTAGGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | ACTCCAGTTTACAACAACTACCTAATTCTTCCTCATGGTTTCCGGCCCTTTGTGCGGCAGAAGCTGCAGTaGCAAATTCCTCGACAAGGT | + |
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Preference number: 5 (lower is better) Translates to: TPVYNNYLILPHGFRPFVRQKLQ*QIPRQG Trigger: ACCTTGTCGAGGAATTTGCAACTGCAGCTTCTGCCG...CACAAAGGGCCGGAAACCATGAGGAAGAATTAGGTAGTTGTTGTAAACTGGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | ACTCCAGTTTACAACAACTACCTAATTCTTCCTCATGGTTTCCGGCCCTTTGTGCGAAGCCATGATACTTaGCCAGATACACCAGGACTC | + |
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Preference number: 5 (lower is better) Translates to: TPVYNNYLILPHGFRPFVRSHDT*PDTPGL Trigger: GAGTCCTGGTGTATCTGGCAAAGTATCATGGCTTCG...CACAAAGGGCCGGAAACCATGAGGAAGAATTAGGTAGTTGTTGTAAACTGGAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | AAGACGTACACTGAGCACAGCACCCCAGAGATGTATTCCTCCAGAAAGCCATCCACTGCAGTCTTGTGTTaGCAAAATTATCAGAAGCAA | + |
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Preference number: 5 (lower is better) Translates to: KTYTEHSTPEMYSSRKPSTAVLC*QNYQKQ Trigger: TTGCTTCTGATAATTTTGCAAACACAAGACTGCAGT...GGATGGCTTTCTGGAGGAATACATCTCTGGGGTGCTGTGCTCAGTGTACGTCTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | ACTCCAGTTTACAACAACTACCTAATTCTTCCTCATGGTTTCCGGCCCTTTGTGATCTTCTCTCTCGAGTaGCTGCAGATGTTCCTAATC | + |
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Preference number: 5 (lower is better) Translates to: TPVYNNYLILPHGFRPFVIFSLE*LQMFLI Trigger: GATTAGGAACATCTGCAGCAACTCGAGAGAGAAGAT...CACAAAGGGCCGGAAACCATGAGGAAGAATTAGGTAGTTGTTGTAAACTGGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | CAGGGTTACCTCTTTAGGAAACTGCCAGGATCTAAAGTGACATTATTAAGGTTATTTAAGTTCTTTACTTaGAGAGCCTTTTGCCGCGCG | + |
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Preference number: 5 (lower is better) Translates to: QGYLFRKLPGSKVTLLRLFKFFT*RAFCRA Trigger: CGCGCGGCAAAAGGCTCTCAAAGTAAAGAACTTAAA...TAACCTTAATAATGTCACTTTAGATCCTGGCAGTTTCCTAAAGAGGTAACCCTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS-3UTR CAA 90 bp | AAATATATAGAAACCCTGGACACAACCCCCAGGGTTACCTCTTTAGGAAACTGCTGTTCAACTGCAGTCTaGTGTTTGCAAAATTATCAG | + |
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Preference number: 5 (lower is better) Translates to: KYIETLDTTPRVTSLGNCCSTAV*CLQNYQ Trigger: CTGATAATTTTGCAAACACAAGACTGCAGTTGAACA...GCAGTTTCCTAAAGAGGTAACCCTGGGGGTTGTGTCCAGGGTTTCTATATATTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS GCA 90 bp | CTTTGTTCTGCTTTATATTTAAGGCTCTCTTCTCCAGAAAGTTCATaGCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGAGTCAG | + |
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Preference number: 5 (lower is better) Translates to: LCSALYLRLSSPESS*HLLLLLLLLLLQSQ Trigger: CTGACTCTGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGCATGAACTTTCTGGAGAAGAGAGCCTTAAATATAAAGCAGAACAAAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102691.11 ENSMUST00000157019.2 |
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| CDS CCA 72 bp | CCTCTTCCTCCTCCTCTTCCTCCTCCTCTTCCTCGGTaGGCAGGGCACCCAAGGAGCCCAGGATCCGGGACC | + |
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Preference number: 6 (lower is better) Translates to: PLPPPLPPPLPR*AGHPRSPGSGT Trigger: GGTCCCGGATCCTGGGCTCCTTGGGTGCCCTGCCCACCGAGGAAGAGGAGGAGGAAGAGGAGGAGGAAGAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS TCA 72 bp | GGGCAGGGCACCCAAGGAGCCCAGGATCCGGGACCTTaGCCTGGTAAGAGGTCGAGTTCTCCGTTCCGGGTT | + |
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Preference number: 6 (lower is better) Translates to: GQGTQGAQDPGP*PGKRSSSPFRV Trigger: AACCCGGAACGGAGAACTCGACCTCTTACCAGGTCAAGGTCCCGGATCCTGGGCTCCTTGGGTGCCCTGCCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS TCA 72 bp | TTCATTGCTACCCTGAGAGGCCCGGAGTGCCGGCACTaGCTTCGGGTCCTGCAGCCTTCCCTGTTCAACTGC | + |
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Preference number: 6 (lower is better) Translates to: FIATLRGPECRH*LRVLQPSLFNC Trigger: GCAGTTGAACAGGGAAGGCTGCAGGACCCGAAGTCAGTGCCGGCACTCCGGGCCTCTCAGGGTAGCAATGAA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000102691.11 ENSMUST00000157019.2 |
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| CDS CCA 72 bp | AGCCATGATACTTTGCCAGATACACCAGGACTCCAGTaGCGCACCGCCCATCACGCTGGCGGCAGAAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: SHDTLPDTPGLQ*RTAHHAGGRSC Trigger: GCAGCTTCTGCCGCCAGCGTGATGGGCGGTGCGCCACTGGAGTCCTGGTGTATCTGGCAAAGTATCATGGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS TCA 72 bp | AGCCACACCTGGGAATGTGCGTCGTCTAGGCGACTTTaGATCTTTGGCTCTGTGGCCTGGGAGGGAATGTCG | + |
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Preference number: 6 (lower is better) Translates to: SHTWECASSRRL*IFGSVAWEGMS Trigger: CGACATTCCCTCCCAGGCCACAGAGCCAAAGATTCAAAGTCGCCTAGACGACGCACATTCCCAGGTGTGGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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| CDS CAA 72 bp | CTTCTTCTTCTTCTTCAGAGTCAGAGTGGGAATCGTTaGCAGAGCTCTCAGAGGGCTTTGGGGGCGCTGCTT | + |
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Preference number: 6 (lower is better) Translates to: LLLLLQSQSGNR*QSSQRALGALL Trigger: AAGCAGCGCCCCCAAAGCCCTCTGAGAGCTCTGCAAACGATTCCCACTCTGACTCTGAAGAAGAAGAAGAAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102691.11 ENSMUST00000157019.2 |
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| CDS GCA 72 bp | TTCTTCTTCTTCTTCAGAGTCAGAGTGGGAATCGTTTaGAGAGCTCTCAGAGGGCTTTGGGGGCGCTGCTTT | + |
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Preference number: 6 (lower is better) Translates to: FFFFFRVRVGIV*RALRGLWGRCF Trigger: AAAGCAGCGCCCCCAAAGCCCTCTGAGAGCTCTGCAAACGATTCCCACTCTGACTCTGAAGAAGAAGAAGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000102691.11 ENSMUST00000157019.2 |
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| CDS GCA 72 bp | TCTTCCTCTGTGACTTCTTCTACTGGTCGGATTATATaGGGAAGGGTCATGGATCCAGGCCTCCGACTTCTG | + |
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Preference number: 6 (lower is better) Translates to: SSSVTSSTGRII*GRVMDPGLRLL Trigger: CAGAAGTCGGAGGCCTGGATCCATGACCCTTCCGCATATAATCCGACCAGTAGAAGAAGTCACAGAGGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000102691.11 |
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