Pregenerated sensors for CDCA5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024791Ensembl transcript IDs: ENSMUST00000025704.3
Found 54 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCTCTCTGCTGGTTGGTGGCTGAATGCAACAGCAGAGACAGCCCATaGCTAACCCTGTTTCTGACAGTTCCGGTTCAGAGCAGTGGATTC | + |
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Preference number: 1 (lower is better) Translates to: PLCWLVAECNSRDSP*LTLFLTVPVQSSGF Trigger: GAATCCACTGCTCTGAACCGGAACTGTCAGAAACAGGGTTAGCCATGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR TCA 90 bp | GCAGGAGCTTACCTGAGCTCTCATTCCCCACAGCTTCTGCTCTCGTaGACTGTAAAGGTTGGAAGGCCAATGGCCTTTAAACCACAGCTT | + |
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Preference number: 1 (lower is better) Translates to: AGAYLSSHSPQLLLS*TVKVGRPMAFKPQL Trigger: AAGCTGTGGTTTAAAGGCCATTGGCCTTCCAACCTTTACAGTTCACGAGAGCAGAAGCTGTGGGGAATGAGAGCTCAGGTAAGCTCCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR GCA 90 bp | GAACCAAAGCAGAACACAAAACCTCTCTGCTGGTTGGTGGCTGAATaGAACAGCAGAGACAGCCCATGGCTAACCCTGTTTCTGACAGTT | + |
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Preference number: 1 (lower is better) Translates to: EPKQNTKPLCWLVAE*NSRDSPWLTLFLTV Trigger: AACTGTCAGAAACAGGGTTAGCCATGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTTGGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR CCA 90 bp | TCTCTCAACTCTACAGAACCAAAGCAGAACACAAAACCTCTCTGCTaGTTGGTGGCTGAATGCAACAGCAGAGACAGCCCATGGCTAACC | + |
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Preference number: 1 (lower is better) Translates to: SLNSTEPKQNTKPLC*LVAECNSRDSPWLT Trigger: GGTTAGCCATGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTTGGTTCTGTAGAGTTGAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR GCA 90 bp | AGATCTCTCAACTCTACAGAACCAAAGCAGAACACAAAACCTCTCTaGTGGTTGGTGGCTGAATGCAACAGCAGAGACAGCCCATGGCTA | + |
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Preference number: 1 (lower is better) Translates to: RSLNSTEPKQNTKPL*WLVAECNSRDSPWL Trigger: TAGCCATGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTTGGTTCTGTAGAGTTGAGAGATCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR CCA 90 bp | CAGGGCAAGGAGACACAATATAACAAGAGGCCAGCAATACCTTTCTaGGTAACAAGGCTAGTGAAAGGGACCCCACATATCCTGCTCTAC | + |
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Preference number: 1 (lower is better) Translates to: QGKETQYNKRPAIPF*VTRLVKGTPHILLY Trigger: GTAGAGCAGGATATGTGGGGTCCCTTTCACTAGCCTTGTTACCCAGAAAGGTATTGCTGGCCTCTTGTTATATTGTGTCTCCTTGCCCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR TCA 90 bp | GTAAAGGTTGGAAGGCCAATGGCCTTTAAACCACAGCTTTTACCATaGTTGAGAGGTGGCAGGCAGGAAGGAACCTTAGAAGCCATGATA | + |
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Preference number: 1 (lower is better) Translates to: VKVGRPMAFKPQLLP*LRGGRQEGTLEAMI Trigger: TATCATGGCTTCTAAGGTTCCTTCCTGCCTGCCACCTCTCAATCATGGTAAAAGCTGTGGTTTAAAGGCCATTGGCCTTCCAACCTTTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR TCA 90 bp | AATGTAAAAATCCTCCCTCAAGCATTTAACTGTCTCCCTGGTCTTTaGGATCTCTCAACTCTACAGAACCAAAGCAGAACACAAAACCTC | + |
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Preference number: 1 (lower is better) Translates to: NVKILPQAFNCLPGL*DLSTLQNQSRTQNL Trigger: GAGGTTTTGTGTTCTGCTTTGGTTCTGTAGAGTTGAGAGATCTCAAAGACCAGGGAGACAGTTAAATGCTTGAGGGAGGATTTTTACATT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR CAA 90 bp | GGTGGCAGGCAGGAAGGAACCTTAGAAGCCATGATACATCCACTTTaGTTCCCAGCAACCCCCAGGAATGGTTGGTCTCACATGAGAGCA | + |
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Preference number: 2 (lower is better) Translates to: GGRQEGTLEAMIHPL*FPATPRNGWSHMRA Trigger: TGCTCTCATGTGAGACCAACCATTCCTGGGGGTTGCTGGGAACAAAAGTGGATGTATCATGGCTTCTAAGGTTCCTTCCTGCCTGCCACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR-3UTR CCA 90 bp | CATCCACTTTTGTTCCCAGCAACCCCCAGGAATGGTTGGTCTCACATGAGAGCATCCGGTTCAGAGCAGTaGATTCTCATCCCCAACGCT | + |
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Preference number: 2 (lower is better) Translates to: HPLLFPATPRNGWSHMRASGSEQ*ILIPNA Trigger: AGCGTTGGGGATGAGAATCCACTGCTCTGAACCGGA...TGCTCTCATGTGAGACCAACCATTCCTGGGGGTTGCTGGGAACAAAAGTGGATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR-3UTR GCA 90 bp | CCACTTTGCTGTAAGCAGCAGCACCCCGTTCACCAATGTCAACAGCAGAGCACAGGACCCCACATATCCTaGTCTACTCAAAAGGCAATA | + |
|
Preference number: 2 (lower is better) Translates to: PLCCKQQHPVHQCQQQSTGPHIS*STQKAI Trigger: TATTGCCTTTTGAGTAGAGCAGGATATGTGGGGTCC...TGTGCTCTGCTGTTGACATTGGTGAACGGGGTGCTGCTGCTTACAGCAAAGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGGTGGCAGGCAGGAAGGAACCTTAGAAGCCATGATACATCCACTTTTGTTCCTCTCTGCTGGTTGGTaGCTGAATGCAACAGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: RGGRQEGTLEAMIHPLLFLSAGW*LNATAE Trigger: CTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAG...GAACAAAAGTGGATGTATCATGGCTTCTAAGGTTCCTTCCTGCCTGCCACCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR-3UTR CCA 90 bp | AGAGGTGGCAGGCAGGAAGGAACCTTAGAAGCCATGATACATCCACTTTTGTTCAGAGATGAGGTGACATaGTGTCTAGGGCTGAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: RGGRQEGTLEAMIHPLLFRDEVT*CLGLRP Trigger: TGGCCTCAGCCCTAGACACCATGTCACCTCATCTCT...GAACAAAAGTGGATGTATCATGGCTTCTAAGGTTCCTTCCTGCCTGCCACCTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR-3UTR GCA 90 bp | ATTGAGAGGTGGCAGGCAGGAAGGAACCTTAGAAGCCATGATACATCCACTTTTTGGTTGGTGGCTGAATaGAACAGCAGAGACAGCCCA | + |
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Preference number: 2 (lower is better) Translates to: IERWQAGRNLRSHDTSTFWLVAE*NSRDSP Trigger: TGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCA...AAAAGTGGATGTATCATGGCTTCTAAGGTTCCTTCCTGCCTGCCACCTCTCAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR-3UTR CCA 90 bp | ATTGAGAGGTGGCAGGCAGGAAGGAACCTTAGAAGCCATGATACATCCACTTTTAGCAGAGACAGCCCATaGCTAACCCTGTTTCTGACA | + |
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Preference number: 2 (lower is better) Translates to: IERWQAGRNLRSHDTSTFSRDSP*LTLFLT Trigger: TGTCAGAAACAGGGTTAGCCATGGGCTGTCTCTGCT...AAAAGTGGATGTATCATGGCTTCTAAGGTTCCTTCCTGCCTGCCACCTCTCAAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR GCA 72 bp | TGCATCCGAGGCCCACGCTATCAAGTGTACCCACTTTaGTGTAAGCAGCAGCACCCCGTTCACCAATGTCAA | + |
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Preference number: 3 (lower is better) Translates to: CIRGPRYQVYPL*CKQQHPVHQCQ Trigger: TTGACATTGGTGAACGGGGTGCTGCTGCTTACAGCAAAGTGGGTACACTTGATAGCGTGGGCCTCGGATGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR CCA 72 bp | TGGTTGGTGGCTGAATGCAACAGCAGAGACAGCCCATaGCTAACCCTGTTTCTGACAGTTCCGGTTCAGAGC | + |
|
Preference number: 3 (lower is better) Translates to: WLVAECNSRDSP*LTLFLTVPVQS Trigger: GCTCTGAACCGGAACTGTCAGAAACAGGGTTAGCCATGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR-3UTR CAA 90 bp | TCACAGGCAGGTAGGTCTGCAGTGATGGTAGCAATTCAGCATGATTCAGGAACGAAACCTCTCTGCTGGTaGGTGGCTGAATGCAACAGC | + |
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Preference number: 3 (lower is better) Translates to: SQAGRSAVMVAIQHDSGTKPLCW*VAECNS Trigger: GCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTT...CGTTCCTGAATCATGCTGAATTGCTACCATCACTGCAGACCTACCTGCCTGTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR TCA 72 bp | AAAGCAGAACACAAAACCTCTCTGCTGGTTGGTGGCTaGATGCAACAGCAGAGACAGCCCATGGCTAACCCT | + |
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Preference number: 3 (lower is better) Translates to: KAEHKTSLLVGG*MQQQRQPMANP Trigger: AGGGTTAGCCATGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR CCA 72 bp | GCTAACCCTGTTTCTGACAGTTCCGGTTCAGAGCAGTaGATTCTCATCCCCAACGCTGTAGAGGTAGACAGT | + |
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Preference number: 3 (lower is better) Translates to: ANPVSDSSGSEQ*ILIPNAVEVDS Trigger: ACTGTCTACCTCTACAGCGTTGGGGATGAGAATCCACTGCTCTGAACCGGAACTGTCAGAAACAGGGTTAGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR CCA 72 bp | TCTACAGAACCAAAGCAGAACACAAAACCTCTCTGCTaGTTGGTGGCTGAATGCAACAGCAGAGACAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: STEPKQNTKPLC*LVAECNSRDSP Trigger: TGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTTGGTTCTGTAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR TCA 72 bp | GGAAGGCCAATGGCCTTTAAACCACAGCTTTTACCATaGTTGAGAGGTGGCAGGCAGGAAGGAACCTTAGAA | + |
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Preference number: 3 (lower is better) Translates to: GRPMAFKPQLLP*LRGGRQEGTLE Trigger: TTCTAAGGTTCCTTCCTGCCTGCCACCTCTCAATCATGGTAAAAGCTGTGGTTTAAAGGCCATTGGCCTTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR TCA 72 bp | TACCTGAGCTCTCATTCCCCACAGCTTCTGCTCTCGTaGACTGTAAAGGTTGGAAGGCCAATGGCCTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: YLSSHSPQLLLS*TVKVGRPMAFK Trigger: TTTAAAGGCCATTGGCCTTCCAACCTTTACAGTTCACGAGAGCAGAAGCTGTGGGGAATGAGAGCTCAGGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR GCA 72 bp | AACTCTACAGAACCAAAGCAGAACACAAAACCTCTCTaGTGGTTGGTGGCTGAATGCAACAGCAGAGACAGC | + |
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Preference number: 3 (lower is better) Translates to: NSTEPKQNTKPL*WLVAECNSRDS Trigger: GCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTTGGTTCTGTAGAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR TCA 90 bp | CCACCCTGGTGGAGCAGGAGCTTACCTGAGCTCTCATTCCCCACAGCTTCTGCTGACTGTACGACCGCCTaGCTTTCTGAGACATTTCCA | + |
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Preference number: 4 (lower is better) Translates to: PPWWSRSLPELSFPTASADCTTA*LSETFP Trigger: TGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTC...AGCAGAAGCTGTGGGGAATGAGAGCTCAGGTAAGCTCCTGCTCCACCAGGGTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR TCA 90 bp | TCACAGGCAGGTAGGTCTGCAGTGATGGTAGCAATTCAGCATGATTCAGGAACGGCCAGGGGTGGAGGTTaGGGCACAACCAAGGCTCTG | + |
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Preference number: 4 (lower is better) Translates to: SQAGRSAVMVAIQHDSGTARGGG*GTTKAL Trigger: CAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGC...CGTTCCTGAATCATGCTGAATTGCTACCATCACTGCAGACCTACCTGCCTGTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR TCA 90 bp | AACACAAAACCTCTCTGCTGGTTGGTGGCTGAATGCAACAGCAGAGACAGCCCACGAAGGCTTAGTAAGTaGAGTCCTGGGCCCAGACCG | + |
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Preference number: 4 (lower is better) Translates to: NTKPLCWLVAECNSRDSPRRLSK*SPGPRP Trigger: CGGTCTGGGCCCAGGACTTCACTTACTAAGCCTTCG...TGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR GCA 90 bp | AACCAAAGCAGAACACAAAACCTCTCTGCTGGTTGGTGGCTGAATGCAACAGCATCTGCTGTCCAGCTCTaGTTCTCCAGAGTCAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: NQSRTQNLSAGWWLNATASAVQL*FSRVRL Trigger: GAGCCTGACTCTGGAGAAGCAGAGCTGGACAGCAGA...TGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTTGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR CCA 90 bp | ATCAAGTGTACCCACTTTGCTGTAAGCAGCAGCACCCCGTTCACCAATGTCAACAACCGTGTGGACATCTaGGACCTCTACTGCATGAGC | + |
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Preference number: 4 (lower is better) Translates to: IKCTHFAVSSSTPFTNVNNRVDI*DLYCMS Trigger: GCTCATGCAGTAGAGGTCCCAGATGTCCACACGGTT...GTTGACATTGGTGAACGGGGTGCTGCTGCTTACAGCAAAGTGGGTACACTTGAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| 3UTR CAA 72 bp | GAGGTGACATGGTGTCTAGGGCTGAGGCCACACAGCTaGTATTCAAAGAAACAGATGTGGGCGAGGAAAGAG | + |
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Preference number: 4 (lower is better) Translates to: EVTWCLGLRPHS*YSKKQMWARKE Trigger: CTCTTTCCTCGCCCACATCTGTTTCTTTGAATACAAGCTGTGTGGCCTCAGCCCTAGACACCATGTCACCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR TCA 90 bp | CATCCACTTTTGTTCCCAGCAACCCCCAGGAATGGTTGGTCTCACATGAGAGCAGGACACTACAAGTCTTaGAGAGGTCTTCTTTCGTGG | + |
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Preference number: 4 (lower is better) Translates to: HPLLFPATPRNGWSHMRAGHYKS*RGLLSW Trigger: CCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCC...TGCTCTCATGTGAGACCAACCATTCCTGGGGGTTGCTGGGAACAAAAGTGGATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR GCA 90 bp | TCACAGGCAGGTAGGTCTGCAGTGATGGTAGCAATTCAGCATGATTCAGGAACGACATTTCCAGGTCTCTaGTGTCCAGCTCTGCTTCTC | + |
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Preference number: 4 (lower is better) Translates to: SQAGRSAVMVAIQHDSGTTFPGL*CPALLL Trigger: GAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGT...CGTTCCTGAATCATGCTGAATTGCTACCATCACTGCAGACCTACCTGCCTGTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR CCA 90 bp | GCAGAGACTATAAAGCTTACACTGGTGCATCCGAGGCCCACGCTATCAAGTGTACTTCTTCGAACCGTGTaGACATCTGGGACCTCTACT | + |
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Preference number: 4 (lower is better) Translates to: AETIKLTLVHPRPTLSSVLLRTV*TSGTST Trigger: AGTAGAGGTCCCAGATGTCCACACGGTTCGAAGAAG...TACACTTGATAGCGTGGGCCTCGGATGCACCAGTGTAAGCTTTATAGTCTCTGC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR CCA 90 bp | AACACAAAACCTCTCTGCTGGTTGGTGGCTGAATGCAACAGCAGAGACAGCCCATTTCTCTTTCACAACTaGGGGAGAGATTCCAGGGAG | + |
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Preference number: 4 (lower is better) Translates to: NTKPLCWLVAECNSRDSPFLFHN*GRDSRE Trigger: CTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAA...TGGGCTGTCTCTGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR GCA 90 bp | AGAGGTCAAAGCAGAGACTATAAAGCTTACACTGGTGCATCCGAGGCCCACGCTATCAGAAGCTCAAACTaGTCGGCAGCTTCAAATTCA | + |
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Preference number: 4 (lower is better) Translates to: RGQSRDYKAYTGASEAHAIRSSN*SAASNS Trigger: TGAATTTGAAGCTGCCGAGCAGTTTGAGCTTCTGAT...AGCGTGGGCCTCGGATGCACCAGTGTAAGCTTTATAGTCTCTGCTTTGACCTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR CAA 90 bp | CCACTTTGCTGTAAGCAGCAGCACCCCGTTCACCAATGTCAACAGCAGAGCACAGGCCAGGGGTGGAGGTaGAGGCACAACCAAGGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PLCCKQQHPVHQCQQQSTGQGWR*RHNQGS Trigger: AGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCC...TGTGCTCTGCTGTTGACATTGGTGAACGGGGTGCTGCTGCTTACAGCAAAGTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 90 bp | GCACAACCAAGGCTCTGTAGCCGACTGTACGACCGCCTGACTTTCTaGGACATTTCCAGGTCTCTGCTGTCCAGCTCTGCTTCTCCAGAG | + |
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Preference number: 5 (lower is better) Translates to: AQPRLCSRLYDRLTF*DISRSLLSSSASPE Trigger: CTCTGGAGAAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 90 bp | AGGTTGAGGCACAACCAAGGCTCTGTAGCCGACTGTACGACCGCCTaGCTTTCTGAGACATTTCCAGGTCTCTGCTGTCCAGCTCTGCTT | + |
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Preference number: 5 (lower is better) Translates to: RLRHNQGSVADCTTA*LSETFPGLCCPALL Trigger: AAGCAGAGCTGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS CCA 90 bp | AGCTACGATCTTCTTCAAGACGATGGCCTTTCTGACTGGGACCGCTaGAGTTGTCCTCGGCCAGATTTCAGAGAACGAGTTCGGGAGATC | + |
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Preference number: 5 (lower is better) Translates to: SYDLLQDDGLSDWDR*SCPRPDFRERVREI Trigger: GATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGGACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 90 bp | CTAGGACTTCTTCGAACCGTGTGGACATCTGGGACCTCTACTGCATaGGCTACGATCTTCTTCAAGACGATGGCCTTTCTGACTGGGACC | + |
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Preference number: 5 (lower is better) Translates to: LGLLRTVWTSGTSTA*ATIFFKTMAFLTGT Trigger: GGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAGGTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR CAA 90 bp | CAGAGACAGCCCATGGCTAACCCTGTTTCTGACAGTTCCGGTTCAGAGCAGTGGGGGACACTACAAGTCTaGAAGAGGTCTTCTTTCGTG | + |
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Preference number: 5 (lower is better) Translates to: QRQPMANPVSDSSGSEQWGTLQV*KRSSFV Trigger: CACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCC...CCACTGCTCTGAACCGGAACTGTCAGAAACAGGGTTAGCCATGGGCTGTCTCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS GCA 90 bp | GATCCTAGGACTTCTTCGAACCGTGTGGACATCTGGGACCTCTACTaGATGAGCTACGATCTTCTTCAAGACGATGGCCTTTCTGACTGG | + |
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Preference number: 5 (lower is better) Translates to: DPRTSSNRVDIWDLY*MSYDLLQDDGLSDW Trigger: CCAGTCAGAAAGGCCATCGTCTTGAAGAAGATCGTAGCTCATGCAGTAGAGGTCCCAGATGTCCACACGGTTCGAAGAAGTCCTAGGATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS CCA 90 bp | TTTCAGGATTTCAGGAACCTTCTTCTTTCGTTTCTCTTTCACAACTaGGGGAGAGATTCCAGGGAGCGTTCTAGCCGGAACCAAGTCCTT | + |
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Preference number: 5 (lower is better) Translates to: FQDFRNLLLSFLFHN*GRDSRERSSRNQVL Trigger: AAGGACTTGGTTCCGGCTAGAACGCTCCCTGGAATCTCTCCCCCAGTTGTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTGAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS-3UTR CAA 90 bp | AACCAAAGCAGAACACAAAACCTCTCTGCTGGTTGGTGGCTGAATGCAACAGCAACCTTGAGCGGAGGGTaGTTCTCTTTTTCCAAAATA | + |
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Preference number: 5 (lower is better) Translates to: NQSRTQNLSAGWWLNATATLSGG*FSFSKI Trigger: TATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGT...TGCTGTTGCATTCAGCCACCAACCAGCAGAGAGGTTTTGTGTTCTGCTTTGGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 90 bp | AGCTTCAAATTCAGCATTCATGGCCACAGCCCACTTATCCAGCTCTaGTTTCAGGATTTCAGGAACCTTCTTCTTTCGTTTCTCTTTCAC | + |
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Preference number: 5 (lower is better) Translates to: SFKFSIHGHSPLIQL*FQDFRNLLLSFLFH Trigger: GTGAAAGAGAAACGAAAGAAGAAGGTTCCTGAAATCCTGAAATCAGAGCTGGATAAGTGGGCTGTGGCCATGAATGCTGAATTTGAAGCT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 72 bp | AGATTTCCGCTTGGACGACTTCGAAGGCTTAGTAAGTaGAGTCCTGGGCCCAGACCGCTGGGCAGCCCCTCC | + |
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Preference number: 6 (lower is better) Translates to: RFPLGRLRRLSK*SPGPRPLGSPS Trigger: GGAGGGGCTGCCCAGCGGTCTGGGCCCAGGACTTCACTTACTAAGCCTTCGAAGTCGTCCAAGCGGAAATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS CAA 72 bp | CAAAGCCAAAGAAGGATCGGCGGCCAGGGGTGGAGGTaGAGGCACAACCAAGGCTCTGTAGCCGACTGTACG | + |
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Preference number: 6 (lower is better) Translates to: QSQRRIGGQGWR*RHNQGSVADCT Trigger: CGTACAGTCGGCTACAGAGCCTTGGTTGTGCCTCAACCTCCACCCCTGGCCGCCGATCCTTCTTTGGCTTTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 72 bp | TCCAGCTCTGCTTCTCCAGAGTCAGGCTCAACATTCTaGGTGTACAGCACGGGGGTGCTGGAGGGAGTACCA | + |
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Preference number: 6 (lower is better) Translates to: SSSASPESGSTF*VYSTGVLEGVP Trigger: TGGTACTCCCTCCAGCACCCCCGTGCTGTACACTCAGAATGTTGAGCCTGACTCTGGAGAAGCAGAGCTGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS CAA 72 bp | GGGGTGCTGGAGGGAGTACCAGGGACACTACAAGTCTaGAAGAGGTCTTCTTTCGTGGGTACCTTGAGCGGA | + |
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Preference number: 6 (lower is better) Translates to: GVLEGVPGTLQV*KRSSFVGTLSG Trigger: TCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAGTGTCCCTGGTACTCCCTCCAGCACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 72 bp | CCTCGGCCAGATTTCAGAGAACGAGTTCGGGAGATCTaGGCCAGATTTCCGCTTGGACGACTTCGAAGGCTT | + |
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Preference number: 6 (lower is better) Translates to: PRPDFRERVREI*ARFPLGRLRRL Trigger: AAGCCTTCGAAGTCGTCCAAGCGGAAATCTGGCTCAGATCTCCCGAACTCGTTCTCTGAAATCTGGCCGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 72 bp | CACAACCAAGGCTCTGTAGCCGACTGTACGACCGCCTaGCTTTCTGAGACATTTCCAGGTCTCTGCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: HNQGSVADCTTA*LSETFPGLCCP Trigger: TGGACAGCAGAGACCTGGAAATGTCTCAGAAAGTCAGGCGGTCGTACAGTCGGCTACAGAGCCTTGGTTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS CCA 72 bp | CTTCTTCAAGACGATGGCCTTTCTGACTGGGACCGCTaGAGTTGTCCTCGGCCAGATTTCAGAGAACGAGTT | + |
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Preference number: 6 (lower is better) Translates to: LLQDDGLSDWDR*SCPRPDFRERV Trigger: AACTCGTTCTCTGAAATCTGGCCGAGGACAACTCCAGCGGTCCCAGTCAGAAAGGCCATCGTCTTGAAGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS TCA 72 bp | TTCAGCATTCATGGCCACAGCCCACTTATCCAGCTCTaGTTTCAGGATTTCAGGAACCTTCTTCTTTCGTTT | + |
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Preference number: 6 (lower is better) Translates to: FSIHGHSPLIQL*FQDFRNLLLSF Trigger: AAACGAAAGAAGAAGGTTCCTGAAATCCTGAAATCAGAGCTGGATAAGTGGGCTGTGGCCATGAATGCTGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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| CDS CAA 72 bp | CTACAAGTCTTGAAGAGGTCTTCTTTCGTGGGTACCTaGAGCGGAGGGTTGTTCTCTTTTTCCAAAATAAAA | + |
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Preference number: 6 (lower is better) Translates to: LQVLKRSSFVGT*SGGLFSFSKIK Trigger: TTTTATTTTGGAAAAAGAGAACAACCCTCCGCTCAAGGTACCCACGAAAGAAGACCTCTTCAAGACTTGTAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025704.3 |
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