Pregenerated sensors for CDCA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023505Ensembl transcript IDs: ENSMUST00000024270.14, ENSMUST00000131847.8, ENSMUST00000150120.8, ENSMUST00000151674.3
Found 52 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | CCAGCCACAGGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTACCAAAGGCAGAGCTCTaGGGACATCAAAGCTTAAGC | + |
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Preference number: 2 (lower is better) Translates to: PATGRGVGNEGKIMNLILPKAEL*GHQSLS Trigger: GCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGG...TAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCCTGTGGCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR-3UTR TCA 90 bp | GGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAAACCCAAACAAGAAGTaGAGAGGGCCAAAGGCAGAG | + |
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Preference number: 2 (lower is better) Translates to: GRGVGNEGKIMNLILGELNPNKK*RGPKAE Trigger: CTCTGCCTTTGGCCCTCTTCACTTCTTGTTTGGGTT...TAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR-3UTR CCA 90 bp | GGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAACGTTGAAGGAGGCTCAGAAGTaGCAGGAGAGAGATCTATCC | + |
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Preference number: 2 (lower is better) Translates to: GVGNEGKIMNLILGELTLKEAQK*QERDLS Trigger: GGATAGATCTCTCTCCTGCCACTTCTGAGCCTCCTT...CAACGTTAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR-3UTR GCA 90 bp | GGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAAAGTACCAGAGTTGGTaGCTGAGAGGAATCAGAACA | + |
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Preference number: 2 (lower is better) Translates to: GRGVGNEGKIMNLILGELKYQSW*LRGIRT Trigger: TGTTCTGATTCCTCTCAGGCACCAACTCTGGTACTT...TAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR-3UTR GCA 90 bp | GGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAACGTTGCACAGGCCCCTAGGATaGCATTCTATACACACAAGA | + |
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Preference number: 2 (lower is better) Translates to: GVGNEGKIMNLILGELTLHRPLG*HSIHTR Trigger: TCTTGTGTGTATAGAATGGCATCCTAGGGGCCTGTG...CAACGTTAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR-3UTR CAA 90 bp | GGGCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTAGAACAGGGCTTTCTTaGGTGCCCTTGGGGATGACT | + |
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Preference number: 3 (lower is better) Translates to: GPKAELWGHQSLSYIKEARTGLS*VPLGMT Trigger: AGTCATCCCCAAGGGCACCAAAGAAAGCCCTGTTCT...AGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR GCA 72 bp | GAGAGAGATCTATCCAGGTCTCACAGGCCCCTAGGATaGCATTCTATACACACAAGACCCGGTGTAGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: ERDLSRSHRPLG*HSIHTRPGVAL Trigger: CAAAGCTACACCGGGTCTTGTGTGTATAGAATGGCATCCTAGGGGCCTGTGAGACCTGGATAGATCTCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR CCA 72 bp | CATCAAAGCTTAAGCTACATAAAGGAGGCTCAGAAGTaGCAGGAGAGAGATCTATCCAGGTCTCACAGGCCC | + |
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Preference number: 3 (lower is better) Translates to: HQSLSYIKEAQK*QERDLSRSHRP Trigger: GGGCCTGTGAGACCTGGATAGATCTCTCTCCTGCCACTTCTGAGCCTCCTTTATGTAGCTTAAGCTTTGATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR TCA 72 bp | TTAAAAGAACGATGTCCAAGTACCAGAGTTGGTGCCTaGGAGGAATCAGAACAGGGCTTTCTTTGGTGCCCT | + |
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Preference number: 3 (lower is better) Translates to: LKERCPSTRVGA*EESEQGFLWCP Trigger: AGGGCACCAAAGAAAGCCCTGTTCTGATTCCTCTCAGGCACCAACTCTGGTACTTGGACATCGTTCTTTTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR GCA 72 bp | CATTTTAAAAGAACGATGTCCAAGTACCAGAGTTGGTaGCTGAGAGGAATCAGAACAGGGCTTTCTTTGGTG | + |
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Preference number: 3 (lower is better) Translates to: HFKRTMSKYQSW*LRGIRTGLSLV Trigger: CACCAAAGAAAGCCCTGTTCTGATTCCTCTCAGGCACCAACTCTGGTACTTGGACATCGTTCTTTTAAAATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| 3UTR CCA 72 bp | AAACATTTTAAAAGAACGATGTCCAAGTACCAGAGTTaGTGCCTGAGAGGAATCAGAACAGGGCTTTCTTTG | + |
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Preference number: 3 (lower is better) Translates to: KHFKRTMSKYQS*CLRGIRTGLSL Trigger: CAAAGAAAGCCCTGTTCTGATTCCTCTCAGGCACCAACTCTGGTACTTGGACATCGTTCTTTTAAAATGTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR GCA 90 bp | GAAGTGGCAGGAGAGAGATCTATCCAGGTCTCACAGGCCCCTAGGATGCCATTCGGGGAGTTGTCATCCTaGAGGATGGTGAGAGGGGAC | + |
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Preference number: 4 (lower is better) Translates to: EVAGERSIQVSQAPRMPFGELSS*RMVRGD Trigger: GTCCCCTCTCACCATCCTGCAGGATGACAACTCCCC...GAATGGCATCCTAGGGGCCTGTGAGACCTGGATAGATCTCTCTCCTGCCACTTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CCA 90 bp | CAGAAGTGGCAGGAGAGAGATCTATCCAGGTCTCACAGGCCCCTAGGATGCCATGGATCGAGTTCAGCCTaGCTCCAAGGCAGTAACTGG | + |
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Preference number: 4 (lower is better) Translates to: QKWQERDLSRSHRPLGCHGSSSA*LQGSNW Trigger: CCAGTTACTGCCTTGGAGCCAGGCTGAACTCGATCC...ATGGCATCCTAGGGGCCTGTGAGACCTGGATAGATCTCTCTCCTGCCACTTCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CCA 90 bp | GCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTCAGGACTGGGGAGTCTCTaGGTCTCTGGAGGGCTTGTC | + |
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Preference number: 4 (lower is better) Translates to: AKGRALGTSKLKLHKGGSGLGSL*VSGGLV Trigger: GACAAGCCCTCCAGAGACCCAGAGACTCCCCAGTCC...TGAGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CCA 90 bp | GGGCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTGGGCAGAGCAAGCTCTaGGGAGGAAATCGATTCCGA | + |
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Preference number: 4 (lower is better) Translates to: GPKAELWGHQSLSYIKEAGQSKL*GGNRFR Trigger: TCGGAATCGATTTCCTCCCCAGAGCTTGCTCTGCCC...AGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR TCA 90 bp | GCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTCATCTGGAGGGCTTGTCTaGGTTCTGGCTGGCAGCTAT | + |
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Preference number: 4 (lower is better) Translates to: AKGRALGTSKLKLHKGGSSGGLV*VLAGSY Trigger: ATAGCTGCCAGCCAGAACTCAGACAAGCCCTCCAGA...TGAGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR TCA 90 bp | CCAGCCACAGGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGATGCCAGCACTAGGTaGACGAGGGTCTGCTACTCG | + |
|
Preference number: 4 (lower is better) Translates to: PATGRGVGNEGKIMNLILDASTR*TRVCYS Trigger: CGAGTAGCAGACCCTCGTTCACCTAGTGCTGGCATC...TAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCCTGTGGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR GCA 90 bp | GGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAACGTTGGAGGCCGTGCTGGAGTaGCTGAGACGCTCTGAGTCG | + |
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Preference number: 4 (lower is better) Translates to: GVGNEGKIMNLILGELTLEAVLE*LRRSES Trigger: CGACTCAGAGCGTCTCAGGCACTCCAGCACGGCCTC...CAACGTTAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR GCA 90 bp | AGTTGGTGCCTGAGAGGAATCAGAACAGGGCTTTCTTTGGTGCCCTTGGGGATGACCTCCCTAGAACCTTaGTGTTTGCTTTTCGTCTGC | + |
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Preference number: 4 (lower is better) Translates to: SWCLRGIRTGLSLVPLGMTSLEP*CLLFVC Trigger: GCAGACGAAAAGCAAACAGCAAGGTTCTAGGGAGGT...CATCCCCAAGGGCACCAAAGAAAGCCCTGTTCTGATTCCTCTCAGGCACCAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR GCA 90 bp | GCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTCACTTCATGGGTGTCCGTaGAATGCCAAGAGTAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: AKGRALGTSKLKLHKGGSLHGCP*NAKSRR Trigger: TCTCCTACTCTTGGCATTGCACGGACACCCATGAAG...TGAGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CCA 90 bp | GGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAAGGAGAGCGGGGATCTaGGTCTTGTGCCTGTTTGAG | + |
|
Preference number: 4 (lower is better) Translates to: GRGVGNEGKIMNLILGELRRAGI*VLCLFE Trigger: CTCAAACAGGCACAAGACCCAGATCCCCGCTCTCCT...TAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR TCA 90 bp | CCAGCCACAGGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTACTCCTCCTCCAGCTTTaGGAAATCTTCCAGTTCCAA | + |
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Preference number: 4 (lower is better) Translates to: PATGRGVGNEGKIMNLILLLLQL*EIFQFQ Trigger: TTGGAACTGGAAGATTTCTCAAAGCTGGAGGAGGAG...TAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCCTGTGGCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CCA 90 bp | GGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAACGTTGGGCTTGTCTGAGTTCTaGCTGGCAGCTATAGTTTCT | + |
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Preference number: 4 (lower is better) Translates to: GVGNEGKIMNLILGELTLGLSEF*LAAIVS Trigger: AGAAACTATAGCTGCCAGCCAGAACTCAGACAAGCC...CAACGTTAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS GCA 90 bp | TGGATGCCAGCACTAGGTGAACGAGGGTCTGCTACTCGAGCCACTTaGTTGTTGCGTGGCAGAGGCCGTGCTGGAGTGCCTGAGACGCTC | + |
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Preference number: 5 (lower is better) Translates to: WMPALGERGSATRAT*LLRGRGRAGVPETL Trigger: GAGCGTCTCAGGCACTCCAGCACGGCCTCTGCCACGCAACAAGCAAGTGGCTCGAGTAGCAGACCCTCGTTCACCTAGTGCTGGCATCCA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS TCA 90 bp | AGAGCTCTCTACCTGAATAGGAGTGCGCTGGATGCCAGCACTAGGTaGACGAGGGTCTGCTACTCGAGCCACTTGCTTGTTGCGTGGCAG | + |
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Preference number: 5 (lower is better) Translates to: RALYLNRSALDASTR*TRVCYSSHLLVAWQ Trigger: CTGCCACGCAACAAGCAAGTGGCTCGAGTAGCAGACCCTCGTTCACCTAGTGCTGGCATCCAGCGCACTCCTATTCAGGTAGAGAGCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS GCA 90 bp | CGCTTACCCTGTCGTAGTGTCAAGGTCCCAGGGGAGTTGTCATCCTaGAGGATGGTGAGAGGGGACCTCCCTAGAACCTTGCTGTTTGCT | + |
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Preference number: 5 (lower is better) Translates to: RLPCRSVKVPGELSS*RMVRGDLPRTLLFA Trigger: AGCAAACAGCAAGGTTCTAGGGAGGTCCCCTCTCACCATCCTGCAGGATGACAACTCCCCTGGGACCTTGACACTACGACAGGGTAAGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS CCA 90 bp | ACCTTGCTGTTTGCTTTTCGTCTGCTGCGCTTAGAACCTGAGGACTaGGGAGTCTCTGGGTCTCTGGAGGGCTTGTCTGAGTTCTGGCTG | + |
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Preference number: 5 (lower is better) Translates to: TLLFAFRLLRLEPED*GVSGSLEGLSEFWL Trigger: CAGCCAGAACTCAGACAAGCCCTCCAGAGACCCAGAGACTCCCCAGTCCTCAGGTTCTAAGCGCAGCAGACGAAAAGCAAACAGCAAGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024270.14 ENSMUST00000150120.8 |
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| CDS-3UTR CAA 90 bp | ACGATGTCCAAGTACCAGAGTTGGTGCCTGAGAGGAATCAGAACAGGGCTTTCTTGTCGTGGTCCTGGTTaGGCTCCCGTGCTCCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: TMSKYQSWCLRGIRTGLSCRGPG*APVLLL Trigger: GAGGAGGAGCACGGGAGCCAAACCAGGACCACGACA...AGAAAGCCCTGTTCTGATTCCTCTCAGGCACCAACTCTGGTACTTGGACATCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CAA 90 bp | GGGCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTGTTCTGCTGGTAGGCTaGGCTGTGGAGAGCTCTCTA | + |
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Preference number: 5 (lower is better) Translates to: GPKAELWGHQSLSYIKEAVLLVG*AVESSL Trigger: TAGAGAGCTCTCCACAGCCAAGCCTACCAGCAGAAC...AGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CAA 90 bp | GCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTCAGCGGGGATCTGGGTCTaGTGCCTGTTTGAGACCGTT | + |
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Preference number: 5 (lower is better) Translates to: AKGRALGTSKLKLHKGGSAGIWV*CLFETV Trigger: AACGGTCTCAAACAGGCACAAGACCCAGATCCCCGC...TGAGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CAA 90 bp | GGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAGGGTCTCTGGAGGGCTaGTCTGAGTTCTGGCTGGCA | + |
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Preference number: 5 (lower is better) Translates to: GRGVGNEGKIMNLILGELGSLEG*SEFWLA Trigger: TGCCAGCCAGAACTCAGACAAGCCCTCCAGAGACCC...TAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CAA 90 bp | GCCAAAGGCAGAGCTCTGGGGACATCAAAGCTTAAGCTACATAAAGGAGGCTCAGACCTCCCTAGAACCTaGCTGTTTGCTTTTCGTCTG | + |
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Preference number: 5 (lower is better) Translates to: AKGRALGTSKLKLHKGGSDLPRT*LFAFRL Trigger: CAGACGAAAAGCAAACAGCAAGGTTCTAGGGAGGTC...TGAGCCTCCTTTATGTAGCTTAAGCTTTGATGTCCCCAGAGCTCTGCCTTTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CAA 90 bp | GGGAGAGGCGTAGGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAAAGGTCCCAGGGGAGTaGTCATCCTGCAGGATGGTG | + |
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Preference number: 5 (lower is better) Translates to: GRGVGNEGKIMNLILGELKVPGE*SSCRMV Trigger: CACCATCCTGCAGGATGACAACTCCCCTGGGACCTT...TAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCCTACGCCTCTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CAA 90 bp | ACGATGTCCAAGTACCAGAGTTGGTGCCTGAGAGGAATCAGAACAGGGCTTTCTGCTCCTCCTCCAGCTTaGAGAAATCTTCCAGTTCCA | + |
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Preference number: 5 (lower is better) Translates to: TMSKYQSWCLRGIRTGLSAPPPA*RNLPVP Trigger: TGGAACTGGAAGATTTCTCAAAGCTGGAGGAGGAGC...AGAAAGCCCTGTTCTGATTCCTCTCAGGCACCAACTCTGGTACTTGGACATCGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS-3UTR CAA 90 bp | GGCAATGAGGGAAAGATCATGAATCTTATTTTAGGGGAACTAACGTTGAGTGTTCTAGAACCTTGCTGTTaGCTTTTCGTCTGCTGCGCT | + |
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Preference number: 5 (lower is better) Translates to: GNEGKIMNLILGELTLSVLEPCC*LFVCCA Trigger: AGCGCAGCAGACGAAAAGCAAACAGCAAGGTTCTAG...AACACTCAACGTTAGTTCCCCTAAAATAAGATTCATGATCTTTCCCTCATTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS GCA 72 bp | GTGAACGAGGGTCTGCTACTCGAGCCACTTGCTTGTTaGGTGGCAGAGGCCGTGCTGGAGTGCCTGAGACGC | + |
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Preference number: 6 (lower is better) Translates to: VNEGLLLEPLAC*VAEAVLECLRR Trigger: GCGTCTCAGGCACTCCAGCACGGCCTCTGCCACGCAACAAGCAAGTGGCTCGAGTAGCAGACCCTCGTTCAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS CAA 72 bp | GGTGAACGAGGGTCTGCTACTCGAGCCACTTGCTTGTaGCGTGGCAGAGGCCGTGCTGGAGTGCCTGAGACG | + |
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Preference number: 6 (lower is better) Translates to: GERGSATRATCL*RGRGRAGVPET Trigger: CGTCTCAGGCACTCCAGCACGGCCTCTGCCACGCAACAAGCAAGTGGCTCGAGTAGCAGACCCTCGTTCACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS GCA 72 bp | GCACTAGGTGAACGAGGGTCTGCTACTCGAGCCACTTaGTTGTTGCGTGGCAGAGGCCGTGCTGGAGTGCCT | + |
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Preference number: 6 (lower is better) Translates to: ALGERGSATRAT*LLRGRGRAGVP Trigger: AGGCACTCCAGCACGGCCTCTGCCACGCAACAAGCAAGTGGCTCGAGTAGCAGACCCTCGTTCACCTAGTGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS CAA 72 bp | CTAGGTGAACGAGGGTCTGCTACTCGAGCCACTTGCTaGTTGCGTGGCAGAGGCCGTGCTGGAGTGCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: LGERGSATRATC*LRGRGRAGVPE Trigger: CTCAGGCACTCCAGCACGGCCTCTGCCACGCAACAAGCAAGTGGCTCGAGTAGCAGACCCTCGTTCACCTAG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS CAA 72 bp | CGCTTACCCTGTCGTAGTGTCAAGGTCCCAGGGGAGTaGTCATCCTGCAGGATGGTGAGAGGGGACCTCCCT | + |
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Preference number: 6 (lower is better) Translates to: RLPCRSVKVPGE*SSCRMVRGDLP Trigger: AGGGAGGTCCCCTCTCACCATCCTGCAGGATGACAACTCCCCTGGGACCTTGACACTACGACAGGGTAAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS CAA 90 bp | GCAGAAGGCCGCTTACCCTGTCGTAGTGTCAAGGTCCCAGGGGAGTaGTCATCCTGCAGGATGGTGAGAGGGGACCTCCCTAGAACCTTG | + |
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Preference number: 6 (lower is better) Translates to: AEGRLPCRSVKVPGE*SSCRMVRGDLPRTL Trigger: CAAGGTTCTAGGGAGGTCCCCTCTCACCATCCTGCAGGATGACAACTCCCCTGGGACCTTGACACTACGACAGGGTAAGCGGCCTTCTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS GCA 72 bp | CTGAGGGTCTGGACCACTGATCTTCATGGGTGTCCGTaGAATGCCAAGAGTAGGAGAGCGGGGATCTGGGTC | + |
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Preference number: 6 (lower is better) Translates to: LRVWTTDLHGCP*NAKSRRAGIWV Trigger: GACCCAGATCCCCGCTCTCCTACTCTTGGCATTGCACGGACACCCATGAAGATCAGTGGTCCAGACCCTCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS CAA 90 bp | GCAATGCCAAGAGTAGGAGAGCGGGGATCTGGGTCTTGTGCCTGTTaGAGACCGTTCAGCTGTTCTGCTGGTAGGCTTGGCTGTGGAGAG | + |
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Preference number: 6 (lower is better) Translates to: AMPRVGERGSGSCAC*RPFSCSAGRLGCGE Trigger: CTCTCCACAGCCAAGCCTACCAGCAGAACAGCTGAACGGTCTCAAACAGGCACAAGACCCAGATCCCCGCTCTCCTACTCTTGGCATTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS GCA 72 bp | TGTCGTAGTGTCAAGGTCCCAGGGGAGTTGTCATCCTaGAGGATGGTGAGAGGGGACCTCCCTAGAACCTTG | + |
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Preference number: 6 (lower is better) Translates to: CRSVKVPGELSS*RMVRGDLPRTL Trigger: CAAGGTTCTAGGGAGGTCCCCTCTCACCATCCTGCAGGATGACAACTCCCCTGGGACCTTGACACTACGACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024270.14 |
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| CDS CCA 72 bp | TGTCCGTGCAATGCCAAGAGTAGGAGAGCGGGGATCTaGGTCTTGTGCCTGTTTGAGACCGTTCAGCTGTTC | + |
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Preference number: 6 (lower is better) Translates to: CPCNAKSRRAGI*VLCLFETVQLF Trigger: GAACAGCTGAACGGTCTCAAACAGGCACAAGACCCAGATCCCCGCTCTCCTACTCTTGGCATTGCACGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS CCA 72 bp | TTTGCTTTTCGTCTGCTGCGCTTAGAACCTGAGGACTaGGGAGTCTCTGGGTCTCTGGAGGGCTTGTCTGAG | + |
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Preference number: 6 (lower is better) Translates to: FAFRLLRLEPED*GVSGSLEGLSE Trigger: CTCAGACAAGCCCTCCAGAGACCCAGAGACTCCCCAGTCCTCAGGTTCTAAGCGCAGCAGACGAAAAGCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000024270.14 ENSMUST00000150120.8 |
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| CDS CAA 72 bp | TGCAATGCCAAGAGTAGGAGAGCGGGGATCTGGGTCTaGTGCCTGTTTGAGACCGTTCAGCTGTTCTGCTGG | + |
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Preference number: 6 (lower is better) Translates to: CNAKSRRAGIWV*CLFETVQLFCW Trigger: CCAGCAGAACAGCTGAACGGTCTCAAACAGGCACAAGACCCAGATCCCCGCTCTCCTACTCTTGGCATTGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS CAA 90 bp | GAGTTGTCATCCTGCAGGATGGTGAGAGGGGACCTCCCTAGAACCTaGCTGTTTGCTTTTCGTCTGCTGCGCTTAGAACCTGAGGACTGG | + |
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Preference number: 6 (lower is better) Translates to: ELSSCRMVRGDLPRT*LFAFRLLRLEPEDW Trigger: CCAGTCCTCAGGTTCTAAGCGCAGCAGACGAAAAGCAAACAGCAAGGTTCTAGGGAGGTCCCCTCTCACCATCCTGCAGGATGACAACTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024270.14 ENSMUST00000150120.8 |
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| CDS CCA 72 bp | GGAGTCTCTGGGTCTCTGGAGGGCTTGTCTGAGTTCTaGCTGGCAGCTATAGTTTCTGCGGATTGTTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: GVSGSLEGLSEF*LAAIVSADCLA Trigger: AGCCAAACAATCCGCAGAAACTATAGCTGCCAGCCAGAACTCAGACAAGCCCTCCAGAGACCCAGAGACTCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS CAA 72 bp | TCCTGCAGGATGGTGAGAGGGGACCTCCCTAGAACCTaGCTGTTTGCTTTTCGTCTGCTGCGCTTAGAACCT | + |
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Preference number: 6 (lower is better) Translates to: SCRMVRGDLPRT*LFAFRLLRLEP Trigger: AGGTTCTAAGCGCAGCAGACGAAAAGCAAACAGCAAGGTTCTAGGGAGGTCCCCTCTCACCATCCTGCAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000024270.14 ENSMUST00000150120.8 |
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| CDS CCA 72 bp | TCCTTGGTAAACACCTGTTTGGGATCGAGTTCAGCCTaGCTCCAAGGCAGTAACTGGTCCTCAGGGGATAAC | + |
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Preference number: 6 (lower is better) Translates to: SLVNTCLGSSSA*LQGSNWSSGDN Trigger: GTTATCCCCTGAGGACCAGTTACTGCCTTGGAGCCAGGCTGAACTCGATCCCAAACAGGTGTTTACCAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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| CDS TCA 72 bp | TTCTGTCTCCAATACTTCGCTCAGCTCTTTCACCAGTaGGCACTGAGGGTCTGGACCACTGATCTTCATGGG | + |
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Preference number: 6 (lower is better) Translates to: FCLQYFAQLFHQ*ALRVWTTDLHG Trigger: CCCATGAAGATCAGTGGTCCAGACCCTCAGTGCTCACTGGTGAAAGAGCTGAGCGAAGTATTGGAGACAGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000024270.14 ENSMUST00000131847.8 ENSMUST00000150120.8 ENSMUST00000151674.3 |
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