RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDCA2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048922

Ensembl transcript IDs: ENSMUST00000124045.3, ENSMUST00000130922.2, ENSMUST00000131179.8, ENSMUST00000132705.8, ENSMUST00000150006.9, ENSMUST00000163100.8

Found 236 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTTTTATTAGAAATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTaGGTCCTCTTCCCTAAGAGCCAATGCCAGGTGGGATTGTCTGTT +
Preference number: 1 (lower is better)
Translates to: FLLEMCNALKRPTGS*VLFPKSQCQVGLSV
Trigger: AACAGACAATCCCACCTGGCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACATTTCTAATAAAAA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR-3UTR GCA 90 bp CCTCAGGAGGCAGATAGGCAGATATCTGTGGATTCAAGGTCAGCCTGGTCTACAAACTCAGAAATCCTCTaGCTCTGCCTTCCAAGTGCT +
Preference number: 2 (lower is better)
Translates to: PQEADRQISVDSRSAWSTNSEIL*LCLPSA
Trigger: AGCACTTGGAAGGCAGAGGCAGAGGATTTCTGAGTT...TGTAGACCAGGCTGACCTTGAATCCACAGATATCTGCCTATCTGCCTCCTGAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
3UTR-3UTR TCA 90 bp CAGTTTAAAAAGGCATGTACTAGCCAGGTGGTAGTGGTACACACCTTTACTCCTAGACCAGGCTGTCCTTaGACTCAGAAATCCTCTGCC +
Preference number: 2 (lower is better)
Translates to: QFKKACTSQVVVVHTFTPRPGCP*TQKSSA
Trigger: GGCAGAGGATTTCTGAGTTCAAGGACAGCCTGGTCT...AGGAGTAAAGGTGTGTACCACTACCACCTGGCTAGTACATGCCTTTTTAAACTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
3UTR-3UTR CCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCGGCCTACAGGAAGCTaGGTCCTCTTCCCTAAGAGC +
Preference number: 2 (lower is better)
Translates to: NCRNTLLDLERNALTKQRRPTGS*VLFPKS
Trigger: GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCG...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR-3UTR GCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATGGGATTGTCTGTTCCTaGCTTTGTTCTCCTGGGCCC +
Preference number: 2 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHGIVCS*LCSPGP
Trigger: GGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCC...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR-3UTR GCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATTCCCTAAGAGCCAATaGCAGGTGGGATTGTCTGTT +
Preference number: 2 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKFPKSQ*QVGLSV
Trigger: AACAGACAATCCCACCTGGCATTGGCTCTTAGGGAA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR-3UTR CCA 90 bp GCCAATGAAAGTGATGCTTATATATTGTCAGTTGAATGCCACCATAGAAAACAAATAGGCAGATATCTGTaGATTCAAGGTCAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: ANESDAYILSVECHHRKQIGRYL*IQGQPG
Trigger: ACCAGGCTGACCTTGAATCCACAGATATCTGCCTAT...TTGTTTTCTATGGTGGCATTCAACTGACAATATATAAGCATCACTTTCATTGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
3UTR-3UTR GCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATTTTTATTAGAAATGTaGAATGCACTGAAGCGGCCT +
Preference number: 2 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKFLLEM*NALKRP
Trigger: AGGCCGCTTCAGTGCATTGCACATTTCTAATAAAAA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR CCA 72 bp GAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCCAGGTaGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCC +
Preference number: 3 (lower is better)
Translates to: EAGSSSLRANAR*DCLFLPLFSWA
Trigger: GGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGGCTCTTAGGGAAGAGGACCCAGCTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR CCA 72 bp GAAATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTaGGTCCTCTTCCCTAAGAGCCAATGCCAGGTGGGA +
Preference number: 3 (lower is better)
Translates to: EMCNALKRPTGS*VLFPKSQCQVG
Trigger: TCCCACCTGGCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACATTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR GCA 72 bp CCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATaGCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTC +
Preference number: 3 (lower is better)
Translates to: PTGSWVLFPKSQ*QVGLSVPAFVL
Trigger: GAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR-3UTR CAA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCCAGGTGGGATaGTCTGTTCCTGCCTTTGTT +
Preference number: 3 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSQCQVG*SVPAFV
Trigger: AACAAAGGCAGGAACAGACAATCCCACCTGGCATTG...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR CCA 72 bp CTCCTAGCCCTCAGGAGGCAGATAGGCAGATATCTGTaGATTCAAGGTCAGCCTGGTCTACAGAGTTCCAGA +
Preference number: 3 (lower is better)
Translates to: LLALRRQIGRYL*IQGQPGLQSSR
Trigger: TCTGGAACTCTGTAGACCAGGCTGACCTTGAATCCACAGATATCTGCCTATCTGCCTCCTGAGGGCTAGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
3UTR CCA 72 bp GCAGATAGGCAGATATCTGTGGATTCAAGGTCAGCCTaGTCTACAGAGTTCCAGACACCAGGGCTAGACAGA +
Preference number: 3 (lower is better)
Translates to: ADRQISVDSRSA*STEFQTPGLDR
Trigger: TCTGTCTAGCCCTGGTGTCTGGAACTCTGTAGACCAGGCTGACCTTGAATCCACAGATATCTGCCTATCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
3UTR-3UTR CAA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGCAATGCCAGGTGGGATaGTCTGTTCCTGCCTTTGTT +
Preference number: 3 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRQCQVG*SVPAFV
Trigger: AACAAAGGCAGGAACAGACAATCCCACCTGGCATTG...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR-3UTR CAA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAACTGCAGAAACACATaGCTGGATCTAGAAAGGAAT +
Preference number: 3 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRNCRNT*LDLERN
Trigger: ATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR TCA 72 bp GGGCCTCATTGTCACTTAATTAGCAAAGGAAAACTCTaGTTTGAGACAGACAATGAAGTCATCAAAGCTGGT +
Preference number: 3 (lower is better)
Translates to: GPHCHLISKGKL*FETDNEVIKAG
Trigger: ACCAGCTTTGATGACTTCATTGTCTGTCTCAAATCAGAGTTTTCCTTTGCTAATTAAGTGACAATGAGGCCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR GCA 72 bp ATCATAACTCAAATGATTTTTATTAGAAATGTGCAATaGACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTT +
Preference number: 3 (lower is better)
Translates to: IITQMIFIRNVQ*TEAAYRKLGPL
Trigger: AAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACATTTCTAATAAAAATCATTTGAGTTATGAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCGAGACAGGGCTGCCCTaGAGACTCCCCTGTGGAGCT +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPETGLP*RLPCGA
Trigger: AGCTCCACAGGGGAGTCTGCAGGGCAGCCCTGTCTC...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCTCTCAGCAAGATCTGTaGAGGCACCCCCAGCACACG +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPSQQDL*RHPQHT
Trigger: CGTGTGCTGGGGGTGCCTCCACAGATCTTGCTGAGA...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCCCTGGCTCTGAGGGCTaGCCAGAGGTTTTGGATTCT +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPPGSEG*PEVLDS
Trigger: AGAATCCAAAACCTCTGGGCAGCCCTCAGAGCCAGG...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCGAGACAGGGCTGCCCTaGAGACTCCCCTGTGGAGCT +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCETGLP*RLPCGA
Trigger: AGCTCCACAGGGGAGTCTGCAGGGCAGCCCTGTCTC...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCGTCACTGCAAGTCCCTaGGAAGTCTCCCTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPVTASP*EVSLSS
Trigger: AGAGCTCAGGGAGACTTCCCAGGGACTTGCAGTGAC...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCGTCTGCCTCTGCTGCTaGGGGACTGCTGGCCATCTT +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCVCLCC*GTAGHL
Trigger: AAGATGGCCAGCAGTCCCTCAGCAGCAGAGGCAGAC...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCGGCTCCTTTGCACTTTaGCACTTACTCTCCGCTCTG +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPGSFAL*HLLSAL
Trigger: CAGAGCGGAGAGTAAGTGTCAAAGTGCAAAGGAGCC...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
3UTR CAA 72 bp TGGGTCCTCTTCCCTAAGAGCCAATGCCAGGTGGGATaGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCC +
Preference number: 4 (lower is better)
Translates to: WVLFPKSQCQVG*SVPAFVLLGPA
Trigger: GGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGGCTCTTAGGGAAGAGGACCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCTTCTTGGACACGATGTaGTCTTGGGTCACAGAAGCC +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPFLDTM*SWVTEA
Trigger: GGCTTCTGTGACCCAAGATCACATCGTGTCCAAGAA...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCTCCCACTGCCAGGGCTaGCATTCCCTGCACATTTCC +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSSHCQG*HSLHIS
Trigger: GGAAATGTGCAGGGAATGGCAGCCCTGGCAGTGGGA...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCGCGAGGGTTTTCTCTTaGAGTCTGGTGGCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCARVFS*SLVAGW
Trigger: CCACCCAGCCACCAGACTGCAAGAGAAAACCCTCGC...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCAATTTTGACCAGCCTTaGAAAGGTCCTGGCTCTGAG +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPNFDQP*KGPGSE
Trigger: CTCAGAGCCAGGACCTTTTCAAGGCTGGTCAAAATT...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCCAGGTGTTCCTCCTTTaGACAATGGAGTATTGGCTG +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPQVFLL*TMEYWL
Trigger: CAGCCAATACTCCATTGTGCAAAGGAGGAACACCTG...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCCTCGAGATTTCCTCCTaGTCATCTTCTCTTTACGGG +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPLEISS*SSSLYG
Trigger: CCCGTAAAGAGAAGATGAGCAGGAGGAAATCTCGAG...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCGTCACTGCAAGTCCCTaGGAAGTCTCCCTGAGCTCT +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCVTASP*EVSLSS
Trigger: AGAGCTCAGGGAGACTTCCCAGGGACTTGCAGTGAC...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCACTGCCTGTGTCTCTaGTACTGGCATTTGGCCCTC +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSHCLCL*YWHLAL
Trigger: GAGGGCCAAATGCCAGTACCAGAGACACAGGCAGTG...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTGGTGTTCCCTTCACTaGCTGTGTCTCTGGTACTGG +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCWCSLH*LCLWYW
Trigger: CCAGTACCAGAGACACAGGCAGTGAAGGGAACACCA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCATCGGATCAGGCAATTaGTTTCTGGAGAGCCCCGCA +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCIGSGN*FLESPA
Trigger: TGCGGGGCTCTCCAGAAACCAATTGCCTGATCCGAT...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCATCGGATCAGGCAATTaGTTTCTGGAGAGCCCCGCA +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSIGSGN*FLESPA
Trigger: TGCGGGGCTCTCCAGAAACCAATTGCCTGATCCGAT...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTCTGGTACTGGCATTTaGCCCTCGCTCAGAAGCAGT +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCSGTGI*PSLRSS
Trigger: ACTGCTTCTGAGCGAGGGCCAAATGCCAGTACCAGA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCCAAAGTGGAAGGACTTaGAGACAGCCACACAAGCCC +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCQSGRT*RQPHKP
Trigger: GGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTG...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCCGGATTCAGACAGCCTaGTGTTTTACAGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPRIQTA*CFTVFS
Trigger: AGAGAAAACTGTAAAACACCAGGCTGTCTGAATCCG...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCAGTTTTTACGGTCCTTaGGCGAACAGGTGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSSFYGP*ANRCSS
Trigger: GGAGGAACACCTGTTCGCCCAAGGACCGTAAAAACT...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCGCTGCCCAGAGGTTTTaGATTCTTGGACACGATGTG +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCAAQRF*ILGHDV
Trigger: CACATCGTGTCCAAGAATCCAAAACCTCTGGGCAGC...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCGCTGACCACATTTGTTaGAATCATCTGAGCTCGTCC +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSADHIC*NHLSSS
Trigger: GGACGAGCTCAGATGATTTCAACAAATGTGGTCAGC...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCAATTTTGACCAGCCTTaGAAAGGTCCTGGCTCTGAG +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCNFDQP*KGPGSE
Trigger: CTCAGAGCCAGGACCTTTTCAAGGCTGGTCAAAATT...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCGGTGTAATTCCCAACTaGTCTACGGTTACTGTGGTG +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCGVIPN*STVTVV
Trigger: CACCACAGTAACCGTAGAGCAGTTGGGAATTACACC...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTCGTCATTCTCCTTCTaGGCTTCTGCAAAGTGGAAG +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCSSFSF*ASAKWK
Trigger: CTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCGTTTCCTGTATGGAGTaGAAAGCTGACCGAAAAGCA +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSVSCME*KADRKA
Trigger: TGCTTTTCGGTCAGCTTTTCACTCCATACAGGAAAC...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CCTAGCCCTCAGGAGGCAGATAGGCAGATATCTGTGGATTCAAGGTCAGCCTGGACTCAGATTTGCAAATaGTCCCTGAGGTGGCTCTAT +
Preference number: 4 (lower is better)
Translates to: PSPQEADRQISVDSRSAWTQICK*SLRWLY
Trigger: ATAGAGCCACCTCAGGGATCATTTGCAAATCTGAGT...CCAGGCTGACCTTGAATCCACAGATATCTGCCTATCTGCCTCCTGAGGGCTAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
CDS-3UTR TCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCAGGAGTCTCAGAGAGTaGGGATTTACTAAGACTCAG +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSRSLRE*GFTKTQ
Trigger: CTGAGTCTTAGTAAATCCTCACTCTCTGAGACTCCT...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCATTAGGAGTCGCATCTaGTACATGCTTCTGAGGAGT +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSIRSRI*YMLLRS
Trigger: ACTCCTCAGAAGCATGTAGCAGATGCGACTCCTAAT...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCTCACCTTGGTTTTACTaGTTGTTCTCTGAAAGCTTT +
Preference number: 4 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPSPWFY*LFSESF
Trigger: AAAGCTTTCAGAGAACAAGCAGTAAAACCAAGGTGA...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTTTTCTGGTCAAATCTaGTATCCTAGACTCTCCGTC +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCFSGQI*YPRLSV
Trigger: GACGGAGAGTCTAGGATATCAGATTTGACCAGAAAA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTTCCTTTCCATTCTCTaGGAACAGCTTACCAGGTTT +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCFLSIL*EQLTRF
Trigger: AAACCTGGTAAGCTGTTCTCAGAGAATGGAAAGGAA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AGCCTGGTCTACAGAGTTCCAGACACCAGGGCTAGACAGAGGAACCTCACTCTGTTTACCTTTCTTCTTTaGGAGGTCCGTGTAGGTCTA +
Preference number: 4 (lower is better)
Translates to: SLVYRVPDTRARQRNLTLFTFLL*EVRVGL
Trigger: TAGACCTACACGGACCTCTCAAAGAAGAAAGGTAAA...CAGAGTGAGGTTCCTCTGTCTAGCCCTGGTGTCTGGAACTCTGTAGACCAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
CDS-3UTR CCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCGGATTCAGACAGCCTaGTGTTTTACAGTTTTCTCT +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSRIQTA*CFTVFS
Trigger: AGAGAAAACTGTAAAACACCAGGCTGTCTGAATCCG...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTTTGTCCTGAGGATATaGTCTCTTCTTTGGAGGATG +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCFVLRI*SLLWRM
Trigger: CATCCTCCAAAGAAGAGACCATATCCTCAGGACAAA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGGTCTGCCTCTGCTGCTaGGGGACTGCTGGCCATCTT +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRVCLCC*GTAGHL
Trigger: AAGATGGCCAGCAGTCCCTCAGCAGCAGAGGCAGAC...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AGATATCTGTGGATTCAAGGTCAGCCTGGTCTACAGAGTTCCAGACACCAGGGCAGGAGTCTCAGAGAGTaGGGATTTACTAAGACTCAG +
Preference number: 4 (lower is better)
Translates to: RYLWIQGQPGLQSSRHQGRSLRE*GFTKTQ
Trigger: CTGAGTCTTAGTAAATCCTCACTCTCTGAGACTCCT...GCCCTGGTGTCTGGAACTCTGTAGACCAGGCTGACCTTGAATCCACAGATATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
CDS-3UTR TCA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTTCACTTCTTCCAGCTaGCCACATTTGTTGAAATCA +
Preference number: 4 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCFTSSS*PHLLKS
Trigger: TGATTTCAACAAATGTGGTCAGCTGGAAGAAGTGAA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAGGGGAGCAGCCATaGATCCCGGCTGGGCGGAAC +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAEGEQP*IPAGRN
Trigger: GTTCCGCCCAGCCGGGATGCATGGCTGCTCCCCTTC...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATGAAGGGGAGCAGCCATaGATCCCGGCTGGGCGGAAC +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHEGEQP*IPAGRN
Trigger: GTTCCGCCCAGCCGGGATGCATGGCTGCTCCCCTTC...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCGATGCAATGTCTCTTaGCCCATAAAAGCATTTTTC +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSRCNVS*PIKAFF
Trigger: GAAAAATGCTTTTATGGGCCAAGAGACATTGCATCG...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCTCACCTTGGTTTTACTaGTTGTTCTCTGAAAGCTTT +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSSPWFY*LFSESF
Trigger: AAAGCTTTCAGAGAACAAGCAGTAAAACCAAGGTGA...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGTCTCAGCAAGATCTGTaGAGGCACCCCCAGCACACG +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRSQQDL*RHPQHT
Trigger: CGTGTGCTGGGGGTGCCTCCACAGATCTTGCTGAGA...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCATATGGTCTCTTCTTTaGAGGATGGACATTCAAATC +
Preference number: 4 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSIWSLL*RMDIQI
Trigger: GATTTGAATGTCCATCCTCCAAAGAAGAGACCATAT...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACCTGGGAAGTCTCCCTaGGCTCTGGAAGGGGAGCAG +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKPGKSP*ALEGEQ
Trigger: CTGCTCCCCTTCCAGAGCTCAGGGAGACTTCCCAGG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGTGGTGGCAGTGGCTGTaGCTGAGCTCAGTGGTGTTA +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRWWQWL*LSSVVL
Trigger: TAACACCACTGAGCTCAGGCACAGCCACTGCCACCA...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAAGGCAGTGGCTGTGCCTaGGCTCAGTGGTGTTACAGG +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKGSGCA*AQWCYR
Trigger: CCTGTAACACCACTGAGCTCAGGCACAGCCACTGCC...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CCTCAGGAGGCAGATAGGCAGATATCTGTGGATTCAAGGTCAGCCTGGTCTACAACTGCCCGGCAACCATaGAGATTTAATATAAGTATT +
Preference number: 4 (lower is better)
Translates to: PQEADRQISVDSRSAWSTTARQP*RFNISI
Trigger: AATACTTATATTAAATCTTCATGGTTGCCGGGCAGT...TGTAGACCAGGCTGACCTTGAATCCACAGATATCTGCCTATCTGCCTCCTGAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
CDS-3UTR GCA 90 bp GCCAATGAAAGTGATGCTTATATATTGTCAGTTGAATGCCACCATAGAAAACAAGGCGTGCGCCACCACTaGCCGGCAACCATGAAGATT +
Preference number: 4 (lower is better)
Translates to: ANESDAYILSVECHHRKQGVRHH*PATMKI
Trigger: AATCTTCATGGTTGCCGGGCAGTGGTGGCGCACGCC...TTGTTTTCTATGGTGGCATTCAACTGACAATATATAAGCATCACTTTCATTGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
CDS-3UTR GCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGTCCCACTGCCAGGGCTaGCATTCCCTGCACATTTCC +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRSHCQG*HSLHIS
Trigger: GGAAATGTGCAGGGAATGGCAGCCCTGGCAGTGGGA...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGGCGAGGGTTTTCTCTTaGAGTCTGGTGGCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRARVFS*SLVAGW
Trigger: CCACCCAGCCACCAGACTGCAAGAGAAAACCCTCGC...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGCACATAGGAGTCTCTaGAGACCTGGTGGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAAHRSL*RPGGSG
Trigger: GCCACTGCCACCAGGTCTCCAGAGACTCCTATGTGC...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCACGGCGCCTGGCCTTCTaGAGGGAAGATGTTGACTTT +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTARRLAF*REDVDF
Trigger: AAAGTCAACATCTTCCCTTCAGAAGGCCAGGCGCCG...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAAAGTCTCCCTGAGCTCTaGAAGGGGAGCAGCCATGCA +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKSLPEL*KGSSHA
Trigger: TGCATGGCTGCTCCCCTTCCAGAGCTCAGGGAGACT...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAAGCACATAGGAGTCTCTaGAGACCTGGTGGCAGTGGC +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKAHRSL*RPGGSG
Trigger: GCCACTGCCACCAGGTCTCCAGAGACTCCTATGTGC...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCACACTGCCTGTGTCTCTaGTACTGGCATTTGGCCCTC +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAHCLCL*YWHLAL
Trigger: GAGGGCCAAATGCCAGTACCAGAGACACAGGCAGTG...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATTGGTGTTCCCTTCACTaGCTGTGTCTCTGGTACTGG +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHWCSLH*LCLWYW
Trigger: CCAGTACCAGAGACACAGGCAGTGAAGGGAACACCA...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACCTGGCTCTGAGGGCTaGCCAGAGGTTTTGGATTCT +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKPGSEG*PEVLDS
Trigger: AGAATCCAAAACCTCTGGGCAGCCCTCAGAGCCAGG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAAGACTGATGATGAGCTaGGTCCAGCTCAGGCGAATC +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTARLMMS*VQLRRI
Trigger: GATTCGCCTGAGCTGGACCCAGCTCATCATCAGTCT...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGTGGGCTTCTGCAAAGTaGAAGGACTTGGAGACAGCC +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRWASAK*KDLETA
Trigger: GGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCA...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGGGGAACCCAGACTGCTaGTATTCAAGAAGATCTTCT +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRGNPDC*YSRRSS
Trigger: AGAAGATCTTCTTGAATATCAGCAGTCTGGGTTCCC...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGTTCTTGGACACGATGTaGTCTTGGGTCACAGAAGCC +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRFLDTM*SWVTEA
Trigger: GGCTTCTGTGACCCAAGATCACATCGTGTCCAAGAA...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGGTTAAGGTCTCTTTTTaGGTCAGTAGAGACAGGGCT +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRVKVSF*VSRDRA
Trigger: AGCCCTGTCTCTACTGACTCAAAAAGAGACCTTAAC...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGCGTCATCACAGAGGTTaGATTCCTTTCCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRRHHRG*IPFHSL
Trigger: CAGAGAATGGAAAGGAATCCAACCTCTGTGATGACG...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGAGTTTTTACGGTCCTTaGGCGAACAGGTGTTCCTCC +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRSFYGP*ANRCSS
Trigger: GGAGGAACACCTGTTCGCCCAAGGACCGTAAAAACT...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAAAGACTGATGATGAGCTaGGTCCAGCTCAGGCGAATC +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKRLMMS*VQLRRI
Trigger: GATTCGCCTGAGCTGGACCCAGCTCATCATCAGTCT...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATCTGGTACTGGCATTTaGCCCTCGCTCAGAAGCAGT +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKSGTGI*PSLRSS
Trigger: ACTGCTTCTGAGCGAGGGCCAAATGCCAGTACCAGA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATCTTGGTCCCGGGTTTTaGCTCCTTTGCACTTTGACA +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHLGPGF*LLCTLT
Trigger: TGTCAAAGTGCAAAGGAGCCAAAACCCGGGACCAAG...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCTTGGTCCCGGGTTTTaGCTCCTTTGCACTTTGACA +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRLGPGF*LLCTLT
Trigger: TGTCAAAGTGCAAAGGAGCCAAAACCCGGGACCAAG...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGCTGCCCAGAGGTTTTaGATTCTTGGACACGATGTG +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAAAQRF*ILGHDV
Trigger: CACATCGTGTCCAAGAATCCAAAACCTCTGGGCAGC...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGCCCACATTCTCACTGTaGCTTGCGGGTTCTTTTATA +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRPTFSL*LAGSFI
Trigger: TATAAAAGAACCCGCAAGCCACAGTGAGAATGTGGG...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCATTTTCCAAGTCTCTCTaGAGCCTTGTGCTGCGTCTC +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAFSKSL*SLVLRL
Trigger: GAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAA...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGTTTTCCAAGTCTCTCTaGAGCCTTGTGCTGCGTCTC +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRFSKSL*SLVLRL
Trigger: GAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAA...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACAAAGTGGAAGGACTTaGAGACAGCCACACAAGCCC +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKQSGRT*RQPHKP
Trigger: GGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATGGGCTTCTGCAAAGTaGAAGGACTTGGAGACAGCC +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKWASAK*KDLETA
Trigger: GGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGGGTGAAGTCCAAAGGTaGCTTAAAGGTATCAGGGGT +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRGEVQR*LKGIRG
Trigger: ACCCCTGATACCTTTAAGTCACCTTTGGACTTCACC...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATGGTGAAGTCCAAAGGTaGCTTAAAGGTATCAGGGGT +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHGEVQR*LKGIRG
Trigger: ACCCCTGATACCTTTAAGTCACCTTTGGACTTCACC...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCACTGAAGGGAAGATGTTaGCTTTCCGGAAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTALKGRC*LSGRGL
Trigger: AAGACCTCTTCCGGAAAGTCAACATCTTCCCTTCAG...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCTGAAGGGAAGATGTTaGCTTTCCGGAAGAGGTCTT +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRLKGRC*LSGRGL
Trigger: AAGACCTCTTCCGGAAAGTCAACATCTTCCCTTCAG...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGGCTGACCACATTTGTTaGAATCATCTGAGCTCGTCC +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRADHIC*NHLSSS
Trigger: GGACGAGCTCAGATGATTTCAACAAATGTGGTCAGC...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGACAGTTTTCTCTACCTaGTCTTCCTTCCTTGCAAGA +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRTVFST*SSFLAR
Trigger: TCTTGCAAGGAAGGAAGAGCAGGTAGAGAAAACTGT...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATCTCGAGATTTCCTCCTaGTCATCTTCTCTTTACGGG +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHLEISS*SSSLYG
Trigger: CCCGTAAAGAGAAGATGAGCAGGAGGAAATCTCGAG...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGTCGTCATTCTCCTTCTaGGCTTCTGCAAAGTGGAAG +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRSSFSF*ASAKWK
Trigger: CTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGA...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGTTTCCTGTATGGAGTaGAAAGCTGACCGAAAAGCA +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAVSCME*KADRKA
Trigger: TGCTTTTCGGTCAGCTTTTCACTCCATACAGGAAAC...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATGGGAACCCAGACTGCTaGTATTCAAGAAGATCTTCT +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHGNPDC*YSRRSS
Trigger: AGAAGATCTTCTTGAATATCAGCAGTCTGGGTTCCC...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCATATTCTCCTCCGCTTTaGAGAGGAGTTTACAGGGAA +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAYSPPL*RGVYRE
Trigger: TTCCCTGTAAACTCCTCTTCAAAGCGGAGGAGAATA...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGACTCAGATTTGCAAATaGTCCCTGAGGTGGCTCTAT +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRTQICK*SLRWLY
Trigger: ATAGAGCCACCTCAGGGATCATTTGCAAATCTGAGT...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAACTCAGATTTGCAAATaGTCCCTGAGGTGGCTCTAT +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTATQICK*SLRWLY
Trigger: ATAGAGCCACCTCAGGGATCATTTGCAAATCTGAGT...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATAGGAGTCTCAGAGAGTaGGGATTTACTAAGACTCAG +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHRSLRE*GFTKTQ
Trigger: CTGAGTCTTAGTAAATCCTCACTCTCTGAGACTCCT...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATGTTAAGGTCTCTTTTTaGGTCAGTAGAGACAGGGCT +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHVKVSF*VSRDRA
Trigger: AGCCCTGTCTCTACTGACTCAAAAAGAGACCTTAAC...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACAGGTGTTCCTCCTTTaGACAATGGAGTATTGGCTG +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKQVFLL*TMEYWL
Trigger: CAGCCAATACTCCATTGTGCAAAGGAGGAACACCTG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGGGTTTTGGCTCCTTTaGACTTTGACACTTACTCTC +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAGFWLL*TLTLTL
Trigger: GAGAGTAAGTGTCAAAGTGCAAAGGAGCCAAAACCC...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR GCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATGGGTTTTGGCTCCTTTaGACTTTGACACTTACTCTC +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHGFWLL*TLTLTL
Trigger: GAGAGTAAGTGTCAAAGTGCAAAGGAGCCAAAACCC...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGCTTGTCATCAAAGTTTaGCTGAAGAAACTGCTCATG +
Preference number: 4 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRLVIKV*LKKLLM
Trigger: CATGAGCAGTTTCTTCAGCCAAACTTTGATGACAAG...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATCCCACATTCTCACTGTaGCTTGCGGGTTCTTTTATA +
Preference number: 4 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHPTFSL*LAGSFI
Trigger: TATAAAAGAACCCGCAAGCCACAGTGAGAATGTGGG...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATATTCTCCTCCGCTTTaGAGAGGAGTTTACAGGGAA +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKYSPPL*RGVYRE
Trigger: TTCCCTGTAAACTCCTCTTCAAAGCGGAGGAGAATA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACGTCATCACAGAGGTTaGATTCCTTTCCATTCTCTG +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKRHHRG*IPFHSL
Trigger: CAGAGAATGGAAAGGAATCCAACCTCTGTGATGACG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATTTTCTGGTCAAATCTaGTATCCTAGACTCTCCGTC +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKFSGQI*YPRLSV
Trigger: GACGGAGAGTCTAGGATATCAGATTTGACCAGAAAA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR TCA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGTTCACTTCTTCCAGCTaGCCACATTTGTTGAAATCA +
Preference number: 4 (lower is better)
Translates to: NCRNTLLDLERNALTKQRFTSSS*PHLLKS
Trigger: TGATTTCAACAAATGTGGTCAGCTGGAAGAAGTGAA...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCATGCACAATGGAGTATTaGCTGGTAAAGACTCATCAA +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTACTMEY*LVKTHQ
Trigger: TTGATGAGTCTTTACCAGCCAATACTCCATTGTGCA...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCACTTGTCATCAAAGTTTaGCTGAAGAAACTGCTCATG +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTALVIKV*LKKLLM
Trigger: CATGAGCAGTTTCTTCAGCCAAACTTTGATGACAAG...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATGCACAATGGAGTATTaGCTGGTAAAGACTCATCAA +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKCTMEY*LVKTHQ
Trigger: TTGATGAGTCTTTACCAGCCAATACTCCATTGTGCA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACGATGCAATGTCTCTTaGCCCATAAAAGCATTTTTC +
Preference number: 4 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKRCNVS*PIKAFF
Trigger: GAAAAATGCTTTTATGGGCCAAGAGACATTGCATCG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CCA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAATATGGTCTCTTCTTTaGAGGATGGACATTCAAATC +
Preference number: 4 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAIWSLL*RMDIQI
Trigger: GATTTGAATGTCCATCCTCCAAAGAAGAGACCATAT...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp AAAGGTCTTAGCGGAGGGGGTGCTGCTTCCACATACAGGAGTCGCTaGAGACCTGGTGGCGGTGGTCTTAGCGGAGGGGCTGCTGCTCCC +
Preference number: 5 (lower is better)
Translates to: KGLSGGGAASTYRSR*RPGGGGLSGGAAAP
Trigger: GGGAGCAGCAGCCCCTCCGCTAAGACCACCGCCACCAGGTCTCCAGCGACTCCTGTATGTGGAAGCAGCACCCCCTCCGCTAAGACCTTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp GAAGTCTCCCTGAGCTCTGGAAGGGGAGCAGCCATGCATCCCGGCTaGGCGGAACCGATGTCAGGTGACTTCTCAGCAAGATCTGTGGAG +
Preference number: 5 (lower is better)
Translates to: EVSLSSGRGAAMHPG*AEPMSGDFSARSVE
Trigger: CTCCACAGATCTTGCTGAGAAGTCACCTGACATCGGTTCCGCCCAGCCGGGATGCATGGCTGCTCCCCTTCCAGAGCTCAGGGAGACTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp CAAAGGCTTCTCCTCTTCCTAGGTAGCGCAGAAGAACCAACACCCTaGCTCTCACTGCCCGAGACAGCGGGCAGCGGCCCTGGGTTTTGT +
Preference number: 5 (lower is better)
Translates to: QRLLLFLGSAEEPTP*LSLPETAGSGPGFC
Trigger: ACAAAACCCAGGGCCGCTGCCCGCTGTCTCGGGCAGTGAGAGCCAGGGTGTTGGTTCTTCTGCGCTACCTAGGAAGAGGAGAAGCCTTTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCAGTCTCTCTGGAGCCTaGTGCTGCGTCTCACCTTGG +
Preference number: 5 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPSLSGA*CCVSPW
Trigger: CCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACT...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCAGCGAGGGTTTTCTCTaGCAGTCTGGTGGCTGGGTG +
Preference number: 5 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPSEGFL*QSGGWV
Trigger: CACCCAGCCACCAGACTGCAAGAGAAAACCCTCGCT...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp AGTGGTGTTACAGGGCCCTCTACACAGTCAGTCACTGCAAGTCCCTaGGAAGTCTCCCTGAGCTCTGGAAGGGGAGCAGCCATGCATCCC +
Preference number: 5 (lower is better)
Translates to: SGVTGPSTQSVTASP*EVSLSSGRGAAMHP
Trigger: GGGATGCATGGCTGCTCCCCTTCCAGAGCTCAGGGAGACTTCCCAGGGACTTGCAGTGACTGACTGTGTAGAGGGCCCTGTAACACCACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCGCAAAGTGGAAGGACTaGGAGACAGCCACACAAGCC +
Preference number: 5 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPAKWKD*ETATQA
Trigger: GGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGC...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp CGCTCTGGTGTTCCCTTCACTGCCTGTGTCTCTGGTACTGGCATTTaGCCCTCGCTCAGAAGCAGTAGTGAGAGGCAACAGGTAGCAGCA +
Preference number: 5 (lower is better)
Translates to: RSGVPFTACVSGTGI*PSLRSSSERQQVAA
Trigger: TGCTGCTACCTGTTGCCTCTCACTACTGCTTCTGAGCGAGGGCCAAATGCCAGTACCAGAGACACAGGCAGTGAAGGGAACACCAGAGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131179.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCAGCGAGGGTTTTCTCTaGCAGTCTGGTGGCTGGGTG +
Preference number: 5 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSSEGFL*QSGGWV
Trigger: CACCCAGCCACCAGACTGCAAGAGAAAACCCTCGCT...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp TCTCGTGCCAACGGAGAGAGCACAGCCTTCTTTAGGTTTCGCTGCTaGGCAATGAATCGGATCAGGCAATTGGTTTCTGGAGAGCCCCGC +
Preference number: 5 (lower is better)
Translates to: SRANGESTAFFRFRC*AMNRIRQLVSGEPR
Trigger: GCGGGGCTCTCCAGAAACCAATTGCCTGATCCGATTCATTGCCCAGCAGCGAAACCTAAAGAAGGCTGTGCTCTCTCCGTTGGCACGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp TGCCCGAGACAGCGGGCAGCGGCCCTGGGTTTTGTCCTGAGGATATaGTCTCTTCTTTGGAGGATGGACATTCAAATCCCCTGCTGTCTA +
Preference number: 5 (lower is better)
Translates to: CPRQRAAALGFVLRI*SLLWRMDIQIPCCL
Trigger: TAGACAGCAGGGGATTTGAATGTCCATCCTCCAAAGAAGAGACCATATCCTCAGGACAAAACCCAGGGCCGCTGCCCGCTGTCTCGGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp CCAACGGAGAGAGCACAGCCTTCTTTAGGTTTCGCTGCTGGGCAATaGATCGGATCAGGCAATTGGTTTCTGGAGAGCCCCGCACACCAA +
Preference number: 5 (lower is better)
Translates to: PTERAQPSLGFAAGQ*IGSGNWFLESPAHQ
Trigger: TTGGTGTGCGGGGCTCTCCAGAAACCAATTGCCTGATCCGATTCATTGCCCAGCAGCGAAACCTAAAGAAGGCTGTGCTCTCTCCGTTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp ACACTGTGCGTCTTCTCCATTTCCTCTCTCTCCCACTGCCAGGGCTaGCATTCCCTGCACATTTCCTTCCCACATTCTCACTGTGGCTTG +
Preference number: 5 (lower is better)
Translates to: TLCVFSISSLSHCQG*HSLHISFPHSHCGL
Trigger: CAAGCCACAGTGAGAATGTGGGAAGGAAATGTGCAGGGAATGGCAGCCCTGGCAGTGGGAGAGAGAGGAAATGGAGAAGACGCACAGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp CGGGCAGCGGCCCTGGGTTTTGTCCTGAGGATATGGTCTCTTCTTTaGAGGATGGACATTCAAATCCCCTGCTGTCTAAGGTGCAGATCG +
Preference number: 5 (lower is better)
Translates to: RAAALGFVLRIWSLL*RMDIQIPCCLRCRS
Trigger: CGATCTGCACCTTAGACAGCAGGGGATTTGAATGTCCATCCTCCAAAGAAGAGACCATATCCTCAGGACAAAACCCAGGGCCGCTGCCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCGGCTGCCCAGAGGTTTaGGATTCTTGGACACGATGT +
Preference number: 5 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCGCPEV*DSWTRC
Trigger: ACATCGTGTCCAAGAATCCAAAACCTCTGGGCAGCC...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp TCTTCTCCATTTCCTCTCTCTCCCACTGCCAGGGCTGCCATTCCCTaGACATTTCCTTCCCACATTCTCACTGTGGCTTGCGGGTTCTTT +
Preference number: 5 (lower is better)
Translates to: SSPFPLSPTARAAIP*TFPSHILTVACGFF
Trigger: AAAGAACCCGCAAGCCACAGTGAGAATGTGGGAAGGAAATGTGCAGGGAATGGCAGCCCTGGCAGTGGGAGAGAGAGGAAATGGAGAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp TCCCATTTTGTTCCAGGTATGAACTCTGACCCCCACAACACACTGTaGGTCTTCTCCATTTCCTCTCTCTCCCACTGCCAGGGCTGCCAT +
Preference number: 5 (lower is better)
Translates to: SHFVPGMNSDPHNTL*VFSISSLSHCQGCH
Trigger: ATGGCAGCCCTGGCAGTGGGAGAGAGAGGAAATGGAGAAGACGCACAGTGTGTTGTGGGGGTCAGAGTTCATACCTGGAACAAAATGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CCAATGCCAGGTGGGATTGTCTGTTCCTGCCTTTGTTCTCCTGGGCCCAGCCCCTTGCACAATGGAGTATaGGCTGGTAAAGACTCATCA +
Preference number: 5 (lower is better)
Translates to: PMPGGIVCSCLCSPGPSPLHNGV*AGKDSS
Trigger: TGATGAGTCTTTACCAGCCAATACTCCATTGTGCAA...GGGGCTGGGCCCAGGAGAACAAAGGCAGGAACAGACAATCCCACCTGGCATTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp CTGCAGGAAGACGCAGGGTTCCCATTTTGTTCCAGGTATGAACTCTaGCCCCCACAACACACTGTGCGTCTTCTCCATTTCCTCTCTCTC +
Preference number: 5 (lower is better)
Translates to: LQEDAGFPFCSRYEL*PPQHTVRLLHFLSL
Trigger: GAGAGAGAGGAAATGGAGAAGACGCACAGTGTGTTGTGGGGGTCAGAGTTCATACCTGGAACAAAATGGGAACCCTGCGTCTTCCTGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp CCCCTGCTGTCTAAGGTGCAGATCGTCATTCTCCTTCTGGGCTTCTaGAAAGTGGAAGGACTTGGAGACAGCCACACAAGCCCTGTATTT +
Preference number: 5 (lower is better)
Translates to: PLLSKVQIVILLLGF*KVEGLGDSHTSPVF
Trigger: AAATACAGGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGCACCTTAGACAGCAGGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp CACACCAACAGTGGAGCGGCGCCTGGCCTTCTGAAGGGAAGATGTTaGCTTTCCGGAAGAGGTCTTAACAAAGCTTTCAGGTGTAATTCC +
Preference number: 5 (lower is better)
Translates to: HTNSGAAPGLLKGRC*LSGRGLNKAFRCNS
Trigger: GGAATTACACCTGAAAGCTTTGTTAAGACCTCTTCCGGAAAGTCAACATCTTCCCTTCAGAAGGCCAGGCGCCGCTCCACTGTTGGTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp GGACTTGGAGACAGCCACACAAGCCCTGTATTTTCCAAGTCTCTCTaGAGCCTTGTGCTGCGTCTCACCTTGGTTTTACTGCTTGTTCTC +
Preference number: 5 (lower is better)
Translates to: GLGDSHTSPVFSKSL*SLVLRLTLVLLLVL
Trigger: GAGAACAAGCAGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGCTGTCTCCAAGTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp GCAGATCGTCATTCTCCTTCTGGGCTTCTGCAAAGTGGAAGGACTTaGAGACAGCCACACAAGCCCTGTATTTTCCAAGTCTCTCTGGAG +
Preference number: 5 (lower is better)
Translates to: ADRHSPSGLLQSGRT*RQPHKPCIFQVSLE
Trigger: CTCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCCCTGCTCTTCCTTCCTaGCAAGAGTTTGAAGGATAT +
Preference number: 5 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCPALPS*QEFEGY
Trigger: ATATCCTTCAAACTCTTGCAAGGAAGGAAGAGCAGG...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp TGGGAATTTCAAACGAGTTCACTTCTTCCAGCTGACCACATTTGTTaGAATCATCTGAGCTCGTCCCCTGCGTGCAGTCAGCCAGAGGAG +
Preference number: 5 (lower is better)
Translates to: WEFQTSSLLPADHIC*NHLSSSPACSQPEE
Trigger: CTCCTCTGGCTGACTGCACGCAGGGGACGAGCTCAGATGATTTCAACAAATGTGGTCAGCTGGAAGAAGTGAACTCGTTTGAAATTCCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131179.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCTTGCACAATGGAGTATaGGCTGGTAAAGACTCATCA +
Preference number: 5 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCLHNGV*AGKDSS
Trigger: TGATGAGTCTTTACCAGCCAATACTCCATTGTGCAA...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCAATGCCCTTGGTTTTACTGCTaGTTCTCTGAAAGCTTTGCT +
Preference number: 5 (lower is better)
Translates to: NALKRPTGSWVLFPKSQCPWFYC*FSESFA
Trigger: AGCAAAGCTTTCAGAGAACAAGCAGTAAAACCAAGG...GCATTGGCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp ATGTGCAATGCACTGAAGCGGCCTACAGGAAGCTGGGTCCTCTTCCCTAAGAGCCCTTGGTTTTACTGCTaGTTCTCTGAAAGCTTTGCT +
Preference number: 5 (lower is better)
Translates to: MCNALKRPTGSWVLFPKSPWFYC*FSESFA
Trigger: AGCAAAGCTTTCAGAGAACAAGCAGTAAAACCAAGG...GCTCTTAGGGAAGAGGACCCAGCTTCCTGTAGGCCGCTTCAGTGCATTGCACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp GCCACACAAGCCCTGTATTTTCCAAGTCTCTCTGGAGCCTTGTGCTaGGTCTCACCTTGGTTTTACTGCTTGTTCTCTGAAAGCTTTGCT +
Preference number: 5 (lower is better)
Translates to: ATQALYFPSLSGALC*VSPWFYCLFSESFA
Trigger: AGCAAAGCTTTCAGAGAACAAGCAGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp TCTCTTCTTTGGAGGATGGACATTCAAATCCCCTGCTGTCTAAGGTaGAGATCGTCATTCTCCTTCTGGGCTTCTGCAAAGTGGAAGGAC +
Preference number: 5 (lower is better)
Translates to: SLLWRMDIQIPCCLR*RSSFSFWASAKWKD
Trigger: GTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGCACCTTAGACAGCAGGGGATTTGAATGTCCATCCTCCAAAGAAGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 90 bp TGTCTAAGGTGCAGATCGTCATTCTCCTTCTGGGCTTCTGCAAAGTaGAAGGACTTGGAGACAGCCACACAAGCCCTGTATTTTCCAAGT +
Preference number: 5 (lower is better)
Translates to: CLRCRSSFSFWASAK*KDLETATQALYFPS
Trigger: ACTTGGAAAATACAGGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGCACCTTAGACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp GAGATAATTGTCAGGGCTGTCCTGGGAGGATATTCTCCTCCGCTTTaGAGAGGAGTTTACAGGGAACCCAGACTGCTGATATTCAAGAAG +
Preference number: 5 (lower is better)
Translates to: EIIVRAVLGGYSPPL*RGVYREPRLLIFKK
Trigger: CTTCTTGAATATCAGCAGTCTGGGTTCCCTGTAAACTCCTCTTCAAAGCGGAGGAGAATATCCTCCCAGGACAGCCCTGACAATTATCTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp ACAGCCACACAAGCCCTGTATTTTCCAAGTCTCTCTGGAGCCTTGTaGTGCGTCTCACCTTGGTTTTACTGCTTGTTCTCTGAAAGCTTT +
Preference number: 5 (lower is better)
Translates to: TATQALYFPSLSGAL*CVSPWFYCLFSESF
Trigger: AAAGCTTTCAGAGAACAAGCAGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGCTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AGATATCTGTGGATTCAAGGTCAGCCTGGTCTACAGAGTTCCAGACACCAGGGCATTTACCTTTCTTCTTaGAGAGGTCCGTGTAGGTCT +
Preference number: 5 (lower is better)
Translates to: RYLWIQGQPGLQSSRHQGIYLSS*RGPCRS
Trigger: AGACCTACACGGACCTCTCAAAGAAGAAAGGTAAAT...GCCCTGGTGTCTGGAACTCTGTAGACCAGGCTGACCTTGAATCCACAGATATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130922.2
CDS TCA 90 bp TGTAATTCCCAACTGCTCTACGGTTACTGTGGTGAAGTCCAAAGGTaGCTTAAAGGTATCAGGGGTGCAAAGATTAGGAGTCGCATCTGC +
Preference number: 5 (lower is better)
Translates to: CNSQLLYGYCGEVQR*LKGIRGAKIRSRIC
Trigger: GCAGATGCGACTCCTAATCTTTGCACCCCTGATACCTTTAAGTCACCTTTGGACTTCACCACAGTAACCGTAGAGCAGTTGGGAATTACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp CAGATGAGCCCCGTCATCACAGAGGTTGGATTCCTTTCCATTCTCTaGGAACAGCTTACCAGGTTTCTTCAACACAGAACGAAGCACAAA +
Preference number: 5 (lower is better)
Translates to: QMSPVITEVGFLSIL*EQLTRFLQHRTKHK
Trigger: TTTGTGCTTCGTTCTGTGTTGAAGAAACCTGGTAAGCTGTTCTCAGAGAATGGAAAGGAATCCAACCTCTGTGATGACGGGGCTCATCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATCGGATCAGGCAATaGGTTTCTGGAGAGCCCCGC +
Preference number: 5 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRNRIRQ*VSGEPR
Trigger: GCGGGGCTCTCCAGAAACCAATTGCCTGATCCGATT...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCACTCTGGTACTGGCATTaGGCCCTCGCTCAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTALWYWH*ALAQKQ
Trigger: CTGCTTCTGAGCGAGGGCCAAATGCCAGTACCAGAG...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATCTCTGGTACTGGCATTaGGCCCTCGCTCAGAAGCAG +
Preference number: 5 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHLWYWH*ALAQKQ
Trigger: CTGCTTCTGAGCGAGGGCCAAATGCCAGTACCAGAG...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGAATCGGATCAGGCAATaGGTTTCTGGAGAGCCCCGC +
Preference number: 5 (lower is better)
Translates to: NCRNTLLDLERNALTKQRNRIRQ*VSGEPR
Trigger: GCGGGGCTCTCCAGAAACCAATTGCCTGATCCGATT...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 90 bp TTTCCGGAAGAGGTCTTAACAAAGCTTTCAGGTGTAATTCCCAACTaGTCTACGGTTACTGTGGTGAAGTCCAAAGGTGACTTAAAGGTA +
Preference number: 5 (lower is better)
Translates to: FPEEVLTKLSGVIPN*STVTVVKSKGDLKV
Trigger: TACCTTTAAGTCACCTTTGGACTTCACCACAGTAACCGTAGAGCAGTTGGGAATTACACCTGAAAGCTTTGTTAAGACCTCTTCCGGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATCATTTCGATACAGTCTaGGGCTACCCTCGAAGTGGG +
Preference number: 5 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHHFDTV*GYPRSG
Trigger: CCCACTTCGAGGGTAGCCCAAGACTGTATCGAAATG...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGACAGGTGTTCCTCCTTaGCACAATGGAGTATTGGCT +
Preference number: 5 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRTGVPP*HNGVLA
Trigger: AGCCAATACTCCATTGTGCAAAGGAGGAACACCTGT...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGCGGGTTTTGGCTCCTTaGCACTTTGACACTTACTCT +
Preference number: 5 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRRVLAP*HFDTYS
Trigger: AGAGTAAGTGTCAAAGTGCAAAGGAGCCAAAACCCG...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAAGCAAAGTGGAAGGACTaGGAGACAGCCACACAAGCC +
Preference number: 5 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKAKWKD*ETATQA
Trigger: GGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGC...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp TCAGAGAGTGAGGATTTACTAAGACTCAGATTTGCAAATGATCCCTaGGGTGGCTCTATGTTTTCAAGGTTCTCCTCCTTGTCATCAAAG +
Preference number: 5 (lower is better)
Translates to: SESEDLLRLRFANDP*GGSMFSRFSSLSSK
Trigger: CTTTGATGACAAGGAGGAGAACCTTGAAAACATAGAGCCACCTCAGGGATCATTTGCAAATCTGAGTCTTAGTAAATCCTCACTCTCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000130922.2
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TCTAAAGGTCCTTTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGCCTGCTCTTCCTTCCTaGCAAGAGTTTGAAGGATAT +
Preference number: 5 (lower is better)
Translates to: SKGPFPEQPKPLVVNGKRPALPS*QEFEGY
Trigger: ATATCCTTCAAACTCTTGCAAGGAAGGAAGAGCAGG...CCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAAAGGACCTTTAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 90 bp ATTCTCCTCCGCTTTGAAGAGGAGTTTACAGGGAACCCAGACTGCTaGTATTCAAGAAGATCTTCTTTTCTGGTCAAATCTGATATCCTA +
Preference number: 5 (lower is better)
Translates to: ILLRFEEEFTGNPDC*YSRRSSFLVKSDIL
Trigger: TAGGATATCAGATTTGACCAGAAAAGAAGATCTTCTTGAATATCAGCAGTCTGGGTTCCCTGTAAACTCCTCTTCAAAGCGGAGGAGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCATTAAGGACACACTCCTaGGATTCAGAGAGAGGCTTG +
Preference number: 5 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTALRTHS*DSERGL
Trigger: CAAGCCTCTCTCTGAATCCAAGGAGTGTGTCCTTAA...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATACAGGTGTTCCTCCTTaGCACAATGGAGTATTGGCT +
Preference number: 5 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHTGVPP*HNGVLA
Trigger: AGCCAATACTCCATTGTGCAAAGGAGGAACACCTGT...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAATTAAGGACACACTCCTaGGATTCAGAGAGAGGCTTG +
Preference number: 5 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKLRTHS*DSERGL
Trigger: CAAGCCTCTCTCTGAATCCAAGGAGTGTGTCCTTAA...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCACCTTGTCATCAAAGTTaGGCTGAAGAAACTGCTCAT +
Preference number: 5 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTAPCHQS*AEETAH
Trigger: ATGAGCAGTTTCTTCAGCCAAACTTTGATGACAAGG...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGTGTTCTCTGAAAGCTTaGCTCTATGGTGTTAGACAG +
Preference number: 5 (lower is better)
Translates to: NCRNTLLDLERNALTKQRCSLKA*LYGVRQ
Trigger: CTGTCTAACACCATAGAGCAAAGCTTTCAGAGAACA...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATTGTTCTCTGAAAGCTTaGCTCTATGGTGTTAGACAG +
Preference number: 5 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHCSLKA*LYGVRQ
Trigger: CTGTCTAACACCATAGAGCAAAGCTTTCAGAGAACA...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCTTCCTTGCAAGAGTTaGAAGGATATGAGATCAGAT +
Preference number: 5 (lower is better)
Translates to: NCRNTLLDLERNALTKQRLPCKS*KDMRSD
Trigger: ATCTGATCTCATATCCTTCAAACTCTTGCAAGGAAG...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACCTTGTCATCAAAGTTaGGCTGAAGAAACTGCTCAT +
Preference number: 5 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKPCHQS*AEETAH
Trigger: ATGAGCAGTTTCTTCAGCCAAACTTTGATGACAAGG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGAGGATTTTCCAAATTTaGACCAGCCTTGAAAAGGTC +
Preference number: 5 (lower is better)
Translates to: NCRNTLLDLERNALTKQRRIFQI*TSLEKV
Trigger: GACCTTTTCAAGGCTGGTCAAAATTTGGAAAATCCT...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGAAACACATAGGATTTTCCAAATTTaGACCAGCCTTGAAAAGGTC +
Preference number: 5 (lower is better)
Translates to: QPKPLVVNGKRNKTAETHRIFQI*TSLEKV
Trigger: GACCTTTTCAAGGCTGGTCAAAATTTGGAAAATCCT...ATGTGTTTCTGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp TTTCCAGAACAGCCAAAGCCTTTAGTGGTAAATGGTAAAAGGAATAAAACTGCAGATATGGTCTCTTCTTaGGAGGATGGACATTCAAAT +
Preference number: 5 (lower is better)
Translates to: FPEQPKPLVVNGKRNKTADMVSS*EDGHSN
Trigger: ATTTGAATGTCCATCCTCCAAAGAAGAGACCATATC...TGCAGTTTTATTCCTTTTACCATTTACCACTAAAGGCTTTGGCTGTTCTGGAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp AACTGCAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGGATATGGTCTCTTCTTaGGAGGATGGACATTCAAAT +
Preference number: 5 (lower is better)
Translates to: NCRNTLLDLERNALTKQRDMVSS*EDGHSN
Trigger: ATTTGAATGTCCATCCTCCAAAGAAGAGACCATATC...CCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTGCAGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS-3UTR CAA 90 bp CAGAAACACATTGCTGGATCTAGAAAGGAATGCTTTAACAAAACAAAGGCAAAACTTCCTTGCAAGAGTTaGAAGGATATGAGATCAGAT +
Preference number: 5 (lower is better)
Translates to: QKHIAGSRKECFNKTKAKLPCKS*KDMRSD
Trigger: ATCTGATCTCATATCCTTCAAACTCTTGCAAGGAAG...TTTTGCCTTTGTTTTGTTAAAGCATTCCTTTCTAGATCCAGCAATGTGTTTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp AGCGGAGGGGGTGCTGCTTCCACATACAGGAGTCGCTaGAGACCTGGTGGCGGTGGTCTTAGCGGAGGGGCT +
Preference number: 6 (lower is better)
Translates to: SGGGAASTYRSR*RPGGGGLSGGA
Trigger: AGCCCCTCCGCTAAGACCACCGCCACCAGGTCTCCAGCGACTCCTGTATGTGGAAGCAGCACCCCCTCCGCT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp AGTCACTGCAAGTCCCTGGGAAGTCTCCCTGAGCTCTaGAAGGGGAGCAGCCATGCATCCCGGCTGGGCGGA +
Preference number: 6 (lower is better)
Translates to: SHCKSLGSLPEL*KGSSHASRLGG
Trigger: TCCGCCCAGCCGGGATGCATGGCTGCTCCCCTTCCAGAGCTCAGGGAGACTTCCCAGGGACTTGCAGTGACT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp CTGGAGAGCCCCGCACACCAACAGTGGAGCGGCGCCTaGCCTTCTGAAGGGAAGATGTTGACTTTCCGGAAG +
Preference number: 6 (lower is better)
Translates to: LESPAHQQWSGA*PSEGKMLTFRK
Trigger: CTTCCGGAAAGTCAACATCTTCCCTTCAGAAGGCCAGGCGCCGCTCCACTGTTGGTGTGCGGGGCTCTCCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp CTGAGCTCTGGAAGGGGAGCAGCCATGCATCCCGGCTaGGCGGAACCGATGTCAGGTGACTTCTCAGCAAGA +
Preference number: 6 (lower is better)
Translates to: LSSGRGAAMHPG*AEPMSGDFSAR
Trigger: TCTTGCTGAGAAGTCACCTGACATCGGTTCCGCCCAGCCGGGATGCATGGCTGCTCCCCTTCCAGAGCTCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp ACAGGGCCCTCTACACAGTCAGTCACTGCAAGTCCCTaGGAAGTCTCCCTGAGCTCTGGAAGGGGAGCAGCC +
Preference number: 6 (lower is better)
Translates to: TGPSTQSVTASP*EVSLSSGRGAA
Trigger: GGCTGCTCCCCTTCCAGAGCTCAGGGAGACTTCCCAGGGACTTGCAGTGACTGACTGTGTAGAGGGCCCTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp AGGAGTCTCTGGAGACCTGGTGGCAGTGGCTGTGCCTaGGCTCAGTGGTGTTACAGGGCCCTCTACACAGTC +
Preference number: 6 (lower is better)
Translates to: RSLWRPGGSGCA*AQWCYRALYTV
Trigger: GACTGTGTAGAGGGCCCTGTAACACCACTGAGCTCAGGCACAGCCACTGCCACCAGGTCTCCAGAGACTCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp GGCAATTGGTTTCTGGAGAGCCCCGCACACCAACAGTaGAGCGGCGCCTGGCCTTCTGAAGGGAAGATGTTG +
Preference number: 6 (lower is better)
Translates to: GNWFLESPAHQQ*SGAWPSEGKML
Trigger: CAACATCTTCCCTTCAGAAGGCCAGGCGCCGCTCCACTGTTGGTGTGCGGGGCTCTCCAGAAACCAATTGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 90 bp GCCTTCTTTAGGTTTCGCTGCTGGGCAATGAATCGGATCAGGCAATaGGTTTCTGGAGAGCCCCGCACACCAACAGTGGAGCGGCGCCTG +
Preference number: 6 (lower is better)
Translates to: AFFRFRCWAMNRIRQ*VSGEPRTPTVERRL
Trigger: CAGGCGCCGCTCCACTGTTGGTGTGCGGGGCTCTCCAGAAACCAATTGCCTGATCCGATTCATTGCCCAGCAGCGAAACCTAAAGAAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp GGGCTGCCCAGAGGTTTTGGATTCTTGGACACGATGTaGTCTTGGGTCACAGAAGCCCGAGGCACAAGACCG +
Preference number: 6 (lower is better)
Translates to: GLPRGFGFLDTM*SWVTEARGTRP
Trigger: CGGTCTTGTGCCTCGGGCTTCTGTGACCCAAGATCACATCGTGTCCAAGAATCCAAAACCTCTGGGCAGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp CAGTGGTGTTACAGGGCCCTCTACACAGTCAGTCACTaGAAGTCCCTGGGAAGTCTCCCTGAGCTCTGGAAG +
Preference number: 6 (lower is better)
Translates to: QWCYRALYTVSH*KSLGSLPELWK
Trigger: CTTCCAGAGCTCAGGGAGACTTCCCAGGGACTTGCAGTGACTGACTGTGTAGAGGGCCCTGTAACACCACTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp CAGCGGGCAGCGGCCCTGGGTTTTGTCCTGAGGATATaGTCTCTTCTTTGGAGGATGGACATTCAAATCCCC +
Preference number: 6 (lower is better)
Translates to: QRAAALGFVLRI*SLLWRMDIQIP
Trigger: GGGGATTTGAATGTCCATCCTCCAAAGAAGAGACCATATCCTCAGGACAAAACCCAGGGCCGCTGCCCGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 72 bp AGGTTTCGCTGCTGGGCAATGAATCGGATCAGGCAATaGGTTTCTGGAGAGCCCCGCACACCAACAGTGGAG +
Preference number: 6 (lower is better)
Translates to: RFRCWAMNRIRQ*VSGEPRTPTVE
Trigger: CTCCACTGTTGGTGTGCGGGGCTCTCCAGAAACCAATTGCCTGATCCGATTCATTGCCCAGCAGCGAAACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 90 bp GCGGGCAGCGGCCCTGGGTTTTGTCCTGAGGATATGGTCTCTTCTTaGGAGGATGGACATTCAAATCCCCTGCTGTCTAAGGTGCAGATC +
Preference number: 6 (lower is better)
Translates to: AGSGPGFCPEDMVSS*EDGHSNPLLSKVQI
Trigger: GATCTGCACCTTAGACAGCAGGGGATTTGAATGTCCATCCTCCAAAGAAGAGACCATATCCTCAGGACAAAACCCAGGGCCGCTGCCCGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp ACCGCTTTCCATCTTGGTCCCGGGTTTTGGCTCCTTTaGACTTTGACACTTACTCTCCGCTCTGGTGTTCCC +
Preference number: 6 (lower is better)
Translates to: TAFHLGPGFWLL*TLTLTLRSGVP
Trigger: GGGAACACCAGAGCGGAGAGTAAGTGTCAAAGTGCAAAGGAGCCAAAACCCGGGACCAAGATGGAAAGCGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 72 bp GACCGCTTTCCATCTTGGTCCCGGGTTTTGGCTCCTTaGCACTTTGACACTTACTCTCCGCTCTGGTGTTCC +
Preference number: 6 (lower is better)
Translates to: DRFPSWSRVLAP*HFDTYSPLWCS
Trigger: GGAACACCAGAGCGGAGAGTAAGTGTCAAAGTGCAAAGGAGCCAAAACCCGGGACCAAGATGGAAAGCGGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp AGTGGAGCGGCGCCTGGCCTTCTGAAGGGAAGATGTTaGCTTTCCGGAAGAGGTCTTAACAAAGCTTTCAGG +
Preference number: 6 (lower is better)
Translates to: SGAAPGLLKGRC*LSGRGLNKAFR
Trigger: CCTGAAAGCTTTGTTAAGACCTCTTCCGGAAAGTCAACATCTTCCCTTCAGAAGGCCAGGCGCCGCTCCACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp GTCAGGGCTGTCCTGGGAGGATATTCTCCTCCGCTTTaGAGAGGAGTTTACAGGGAACCCAGACTGCTGATA +
Preference number: 6 (lower is better)
Translates to: VRAVLGGYSPPL*RGVYREPRLLI
Trigger: TATCAGCAGTCTGGGTTCCCTGTAAACTCCTCTTCAAAGCGGAGGAGAATATCCTCCCAGGACAGCCCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp CACTTCTTCCAGCTGACCACATTTGTTGAAATCATCTaGGCTCGTCCCCTGCGTGCAGTCAGCCAGAGGAGT +
Preference number: 6 (lower is better)
Translates to: HFFQLTTFVEII*ARPLRAVSQRS
Trigger: ACTCCTCTGGCTGACTGCACGCAGGGGACGAGCTCAGATGATTTCAACAAATGTGGTCAGCTGGAAGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131179.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp GCAGGAAGACGCAGGGTTCCCATTTTGTTCCAGGTATaGACTCTGACCCCCACAACACACTGTGCGTCTTCT +
Preference number: 6 (lower is better)
Translates to: AGRRRVPILFQV*TLTPTTHCASS
Trigger: AGAAGACGCACAGTGTGTTGTGGGGGTCAGAGTTCATACCTGGAACAAAATGGGAACCCTGCGTCTTCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp TTGGCTCCTTTGCACTTTGACACTTACTCTCCGCTCTaGTGTTCCCTTCACTGCCTGTGTCTCTGGTACTGG +
Preference number: 6 (lower is better)
Translates to: LAPLHFDTYSPL*CSLHCLCLWYW
Trigger: CCAGTACCAGAGACACAGGCAGTGAAGGGAACACCAGAGCGGAGAGTAAGTGTCAAAGTGCAAAGGAGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 72 bp TGTCAGGGCTGTCCTGGGAGGATATTCTCCTCCGCTTaGAAGAGGAGTTTACAGGGAACCCAGACTGCTGAT +
Preference number: 6 (lower is better)
Translates to: CQGCPGRIFSSA*KRSLQGTQTAD
Trigger: ATCAGCAGTCTGGGTTCCCTGTAAACTCCTCTTCAAAGCGGAGGAGAATATCCTCCCAGGACAGCCCTGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp GACGCAGGGTTCCCATTTTGTTCCAGGTATGAACTCTaGCCCCCACAACACACTGTGCGTCTTCTCCATTTC +
Preference number: 6 (lower is better)
Translates to: DAGFPFCSRYEL*PPQHTVRLLHF
Trigger: GAAATGGAGAAGACGCACAGTGTGTTGTGGGGGTCAGAGTTCATACCTGGAACAAAATGGGAACCCTGCGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp TCTAAGGTGCAGATCGTCATTCTCCTTCTGGGCTTCTaGAAAGTGGAAGGACTTGGAGACAGCCACACAAGC +
Preference number: 6 (lower is better)
Translates to: SKVQIVILLLGF*KVEGLGDSHTS
Trigger: GCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGCACCTTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp TGCAGATCGTCATTCTCCTTCTGGGCTTCTGCAAAGTaGAAGGACTTGGAGACAGCCACACAAGCCCTGTAT +
Preference number: 6 (lower is better)
Translates to: CRSSFSFWASAK*KDLETATQALY
Trigger: ATACAGGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 90 bp GAGACAGCCACACAAGCCCTGTATTTTCCAAGTCTCTCTGGAGCCTaGTGCTGCGTCTCACCTTGGTTTTACTGCTTGTTCTCTGAAAGC +
Preference number: 6 (lower is better)
Translates to: ETATQALYFPSLSGA*CCVSPWFYCLFSES
Trigger: GCTTTCAGAGAACAAGCAGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGCTGTCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 90 bp TGCAGATCGTCATTCTCCTTCTGGGCTTCTGCAAAGTGGAAGGACTaGGAGACAGCCACACAAGCCCTGTATTTTCCAAGTCTCTCTGGA +
Preference number: 6 (lower is better)
Translates to: CRSSFSFWASAKWKD*ETATQALYFPSLSG
Trigger: TCCAGAGAGACTTGGAAAATACAGGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATGACGATCTGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp CAAACGAGTTCACTTCTTCCAGCTGACCACATTTGTTaGAATCATCTGAGCTCGTCCCCTGCGTGCAGTCAG +
Preference number: 6 (lower is better)
Translates to: QTSSLLPADHIC*NHLSSSPACSQ
Trigger: CTGACTGCACGCAGGGGACGAGCTCAGATGATTTCAACAAATGTGGTCAGCTGGAAGAAGTGAACTCGTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000131179.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp AGAGACTTCAGGCAGCTCAGGAATAGGGCTCAGGAGTaGCTTCTTCGATGCAATGTCTCTTGGCCCATAAAA +
Preference number: 6 (lower is better)
Translates to: RDFRQLRNRAQE*LLRCNVSWPIK
Trigger: TTTTATGGGCCAAGAGACATTGCATCGAAGAAGCCACTCCTGAGCCCTATTCCTGAGCTGCCTGAAGTCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131179.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp CATTCTCCTTCTGGGCTTCTGCAAAGTGGAAGGACTTaGAGACAGCCACACAAGCCCTGTATTTTCCAAGTC +
Preference number: 6 (lower is better)
Translates to: HSPSGLLQSGRT*RQPHKPCIFQV
Trigger: GACTTGGAAAATACAGGGCTTGTGTGGCTGTCTCCAAGTCCTTCCACTTTGCAGAAGCCCAGAAGGAGAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp GCCCTGGGTTTTGTCCTGAGGATATGGTCTCTTCTTTaGAGGATGGACATTCAAATCCCCTGCTGTCTAAGG +
Preference number: 6 (lower is better)
Translates to: ALGFVLRIWSLL*RMDIQIPCCLR
Trigger: CCTTAGACAGCAGGGGATTTGAATGTCCATCCTCCAAAGAAGAGACCATATCCTCAGGACAAAACCCAGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 72 bp GGCCCTGGGTTTTGTCCTGAGGATATGGTCTCTTCTTaGGAGGATGGACATTCAAATCCCCTGCTGTCTAAG +
Preference number: 6 (lower is better)
Translates to: GPGFCPEDMVSS*EDGHSNPLLSK
Trigger: CTTAGACAGCAGGGGATTTGAATGTCCATCCTCCAAAGAAGAGACCATATCCTCAGGACAAAACCCAGGGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp GCCCTGTATTTTCCAAGTCTCTCTGGAGCCTTGTGCTaGGTCTCACCTTGGTTTTACTGCTTGTTCTCTGAA +
Preference number: 6 (lower is better)
Translates to: ALYFPSLSGALC*VSPWFYCLFSE
Trigger: TTCAGAGAACAAGCAGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp CAAGCCCTGTATTTTCCAAGTCTCTCTGGAGCCTTGTaGTGCGTCTCACCTTGGTTTTACTGCTTGTTCTCT +
Preference number: 6 (lower is better)
Translates to: QALYFPSLSGAL*CVSPWFYCLFS
Trigger: AGAGAACAAGCAGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGGAAAATACAGGGCTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp CCAAGTCTCTCTGGAGCCTTGTGCTGCGTCTCACCTTaGTTTTACTGCTTGTTCTCTGAAAGCTTTGCTCTA +
Preference number: 6 (lower is better)
Translates to: PSLSGALCCVSP*FYCLFSESFAL
Trigger: TAGAGCAAAGCTTTCAGAGAACAAGCAGTAAAACCAAGGTGAGACGCAGCACAAGGCTCCAGAGAGACTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 90 bp GGACTGGTAGTTTTTACGGTCCTTGGGCGAACAGGTGTTCCTCCTTaGCACAATGGAGTATTGGCTGGTAAAGACTCATCAAACACTTCA +
Preference number: 6 (lower is better)
Translates to: GLVVFTVLGRTGVPP*HNGVLAGKDSSNTS
Trigger: TGAAGTGTTTGATGAGTCTTTACCAGCCAATACTCCATTGTGCAAAGGAGGAACACCTGTTCGCCCAAGGACCGTAAAAACTACCAGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp CCCGTCATCACAGAGGTTGGATTCCTTTCCATTCTCTaGGAACAGCTTACCAGGTTTCTTCAACACAGAACG +
Preference number: 6 (lower is better)
Translates to: PVITEVGFLSIL*EQLTRFLQHRT
Trigger: CGTTCTGTGTTGAAGAAACCTGGTAAGCTGTTCTCAGAGAATGGAAAGGAATCCAACCTCTGTGATGACGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp CATCTTCTCTTTACGGGGCTCAGCTTGTGTAGTATATaGGCTGCAAACACCTGTAGAACTCAGCGTCTGCTT +
Preference number: 6 (lower is better)
Translates to: HLLFTGLSLCSI*AANTCRTQRLL
Trigger: AAGCAGACGCTGAGTTCTACAGGTGTTTGCAGCTCATATACTACACAAGCTGAGCCCCGTAAAGAGAAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp AAAGGTATCAGGGGTGCAAAGATTAGGAGTCGCATCTaGTACATGCTTCTGAGGAGTCACAAACGGTTCAGT +
Preference number: 6 (lower is better)
Translates to: KGIRGAKIRSRI*YMLLRSHKRFS
Trigger: ACTGAACCGTTTGTGACTCCTCAGAAGCATGTAGCAGATGCGACTCCTAATCTTTGCACCCCTGATACCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp CAGCTCAGGAATAGGGCTCAGGAGTGGCTTCTTCGATaGAATGTCTCTTGGCCCATAAAAGCATTTTTCAAC +
Preference number: 6 (lower is better)
Translates to: QLRNRAQEWLLR*NVSWPIKAFFN
Trigger: GTTGAAAAATGCTTTTATGGGCCAAGAGACATTGCATCGAAGAAGCCACTCCTGAGCCCTATTCCTGAGCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000131179.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp CTGACCGAAAAGCAGACATTCGCTCTCTTAAAACACTaGCATTTCGATACAGTCTTGGGCTACCCTCGAAGT +
Preference number: 6 (lower is better)
Translates to: LTEKQTFALLKH*HFDTVLGYPRS
Trigger: ACTTCGAGGGTAGCCCAAGACTGTATCGAAATGCCAGTGTTTTAAGAGAGCGAATGTCTGCTTTTCGGTCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 72 bp GTTTTTACGGTCCTTGGGCGAACAGGTGTTCCTCCTTaGCACAATGGAGTATTGGCTGGTAAAGACTCATCA +
Preference number: 6 (lower is better)
Translates to: VFTVLGRTGVPP*HNGVLAGKDSS
Trigger: TGATGAGTCTTTACCAGCCAATACTCCATTGTGCAAAGGAGGAACACCTGTTCGCCCAAGGACCGTAAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp CATCTTCTCTTTACGGGGCTCAGCTTGTGTAGTATATaGGCTGCAAACACCTGTAGAACTCAGCGTCTTTCT +
Preference number: 6 (lower is better)
Translates to: HLLFTGLSLCSI*AANTCRTQRLS
Trigger: AGAAAGACGCTGAGTTCTACAGGTGTTTGCAGCTCATATACTACACAAGCTGAGCCCCGTAAAGAGAAGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131179.8
CDS TCA 72 bp TGTGTGGGAATTTCAAACGAGTTCACTTCTTCCAGCTaGCCACATTTGTTGAAATCATCTGAGCTCGTCCCC +
Preference number: 6 (lower is better)
Translates to: CVGISNEFTSSS*PHLLKSSELVP
Trigger: GGGGACGAGCTCAGATGATTTCAACAAATGTGGTCAGCTGGAAGAAGTGAACTCGTTTGAAATTCCCACACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000131179.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp GAGGTCTTAACAAAGCTTTCAGGTGTAATTCCCAACTaGTCTACGGTTACTGTGGTGAAGTCCAAAGGTGAC +
Preference number: 6 (lower is better)
Translates to: EVLTKLSGVIPN*STVTVVKSKGD
Trigger: GTCACCTTTGGACTTCACCACAGTAACCGTAGAGCAGTTGGGAATTACACCTGAAAGCTTTGTTAAGACCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000124045.3
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS GCA 72 bp TTTTTACGGTCCTTGGGCGAACAGGTGTTCCTCCTTTaGACAATGGAGTATTGGCTGGTAAAGACTCATCAA +
Preference number: 6 (lower is better)
Translates to: FLRSLGEQVFLL*TMEYWLVKTHQ
Trigger: TTGATGAGTCTTTACCAGCCAATACTCCATTGTGCAAAGGAGGAACACCTGTTCGCCCAAGGACCGTAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CCA 72 bp AGTAACTCTCTTCCTCTTCCTCGGATTCAGACAGCCTaGTGTTTTACAGTTTTCTCTACCTGCTCTTCCTTC +
Preference number: 6 (lower is better)
Translates to: SNSLPLPRIQTA*CFTVFSTCSSF
Trigger: GAAGGAAGAGCAGGTAGAGAAAACTGTAAAACACCAGGCTGTCTGAATCCGAGGAAGAGGAAGAGAGTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS CAA 72 bp AGTTTTCTCTACCTGCTCTTCCTTCCTTGCAAGAGTTaGAAGGATATGAGATCAGATGAGCCCCGTCATCAC +
Preference number: 6 (lower is better)
Translates to: SFLYLLFLPCKS*KDMRSDEPRHH
Trigger: GTGATGACGGGGCTCATCTGATCTCATATCCTTCAAACTCTTGCAAGGAAGGAAGAGCAGGTAGAGAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000132705.8
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp CTGCAAACACCTGTAGAACTCAGCGTCTTTCTTCTTTaGGAGGTCCGTGTAGGTCTAACAATACTGCAGATT +
Preference number: 6 (lower is better)
Translates to: LQTPVELSVFLL*EVRVGLTILQI
Trigger: AATCTGCAGTATTGTTAGACCTACACGGACCTCTCAAAGAAGAAAGACGCTGAGTTCTACAGGTGTTTGCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131179.8
CDS CAA 72 bp TCTCACCTTGGTTTTACTGCTTGTTCTCTGAAAGCTTaGCTCTATGGTGTTAGACAGCTCTTCAATCAGCTG +
Preference number: 6 (lower is better)
Translates to: SHLGFTACSLKA*LYGVRQLFNQL
Trigger: CAGCTGATTGAAGAGCTGTCTAACACCATAGAGCAAAGCTTTCAGAGAACAAGCAGTAAAACCAAGGTGAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8
CDS TCA 72 bp ACATTCTCACTGTGGCTTGCGGGTTCTTTTATATTTTaGATGAGGACATCTTCTGAACAGTTAAGGTCTCTT +
Preference number: 6 (lower is better)
Translates to: TFSLWLAGSFIF*MRTSSEQLRSL
Trigger: AAGAGACCTTAACTGTTCAGAAGATGTCCTCATTCAAAATATAAAAGAACCCGCAAGCCACAGTGAGAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000150006.9
ENSMUST00000163100.8