Pregenerated sensors for CDC45 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000028

Ensembl transcript IDs: ENSMUST00000000028.14, ENSMUST00000096990.10, ENSMUST00000115585.2

Found 29 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTGGAGTCGTTTCTGCCCATGCACAGACCAGAGCTTAAACCTGGCTaGTGTGTAGCTGGTGTTGTACAGGCTTTCATGGAGGGACCAGTG	+
Preference number: 5 (lower is better) Translates to: LESFLPMHRPELKPG*CVAGVVQAFMEGPV Trigger: CACTGGTCCCTCCATGAAAGCCTGTACAACACCAGCTACACAGCAGCCAGGTTTAAGCTCTGGTCTGTGCATGGGCAGAAACGACTCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 90 bp	TGCTTGACTTGCTTCAGGGGAAGCCCCATGTCTGCAAGGAACTCCTaGAGTCGTTTCTGCCCATGCACAGACCAGAGCTTAAACCTGGCT	+
Preference number: 5 (lower is better) Translates to: CLTCFRGSPMSARNS*SRFCPCTDQSLNLA Trigger: AGCCAGGTTTAAGCTCTGGTCTGTGCATGGGCAGAAACGACTCCAGGAGTTCCTTGCAGACATGGGGCTTCCCCTGAAGCAAGTCAAGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 90 bp	AGAGACAGCTGGCGATGGTCTGTTGTGTGGCTTGGAGGTGCTTCTTaGCGAGCTCTAGACCAAGGTATAGCTTGTCCAGGTTACTCCTGG	+
Preference number: 5 (lower is better) Translates to: RDSWRWSVVWLGGAS*RALDQGIACPGYSW Trigger: CCAGGAGTAACCTGGACAAGCTATACCTTGGTCTAGAGCTCGCCAAGAAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCTCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 90 bp	ACGAGGTTGGTACAGAGACAGCTGGCGATGGTCTGTTGTGTGGCTTaGAGGTGCTTCTTGGCGAGCTCTAGACCAAGGTATAGCTTGTCC	+
Preference number: 5 (lower is better) Translates to: TRLVQRQLAMVCCVA*RCFLASSRPRYSLS Trigger: GGACAAGCTATACCTTGGTCTAGAGCTCGCCAAGAAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCTCTGTACCAACCTCGT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS GCA 90 bp	TTGGTACAGAGACAGCTGGCGATGGTCTGTTGTGTGGCTTGGAGGTaGTTCTTGGCGAGCTCTAGACCAAGGTATAGCTTGTCCAGGTTA	+
Preference number: 5 (lower is better) Translates to: LVQRQLAMVCCVAWR*FLASSRPRYSLSRL Trigger: TAACCTGGACAAGCTATACCTTGGTCTAGAGCTCGCCAAGAAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCTCTGTACCAA 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS GCA 90 bp	GTACACAAAGGACTTGAGCAGATGTCTGCTGAGCAGACTCAAGGATaGTGGCTTGGAAAACAGGGTGACATCTGGAGTGCCCTCCATGAG	+
Preference number: 5 (lower is better) Translates to: VHKGLEQMSAEQTQG*WLGKQGDIWSALHE Trigger: CTCATGGAGGGCACTCCAGATGTCACCCTGTTTTCCAAGCCAGCATCCTTGAGTCTGCTCAGCAGACATCTGCTCAAGTCCTTTGTGTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS TCA 90 bp	GCAAAGACGACATCACTGGCCAGGAATTTATGCTTGAACCCAAACTaGATGCTGAAAGTCTGTACACGCATGTCCTTCATCCCAAATTTA	+
Preference number: 5 (lower is better) Translates to: AKTTSLARNLCLNPN*MLKVCTRMSFIPNL Trigger: TAAATTTGGGATGAAGGACATGCGTGTACAGACTTTCAGCATTCAGTTTGGGTTCAAGCATAAATTCCTGGCCAGTGATGTCGTCTTTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS GCA 90 bp	CTCTTGTTTAATAAGCAATTTGATCTGCTCTTTATGTTCAAGATATaGAGTTTCAAGTTCTTGCCACCCAGAAACCGGAACCAGCGTATA	+
Preference number: 5 (lower is better) Translates to: LLFNKQFDLLFMFKI*SFKFLPPRNRNQRI Trigger: TATACGCTGGTTCCGGTTTCTGGGTGGCAAGAACTTGAAACTGCATATCTTGAACATAAAGAGCAGATCAAATTGCTTATTAAACAAGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096990.10
CDS CCA 72 bp	TGCTTCAGGGGAAGCCCCATGTCTGCAAGGAACTCCTaGAGTCGTTTCTGCCCATGCACAGACCAGAGCTTA	+
Preference number: 6 (lower is better) Translates to: CFRGSPMSARNS*SRFCPCTDQSL Trigger: TAAGCTCTGGTCTGTGCATGGGCAGAAACGACTCCAGGAGTTCCTTGCAGACATGGGGCTTCCCCTGAAGCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 72 bp	GGTTGGTACAGAGACAGCTGGCGATGGTCTGTTGTGTaGCTTGGAGGTGCTTCTTGGCGAGCTCTAGACCAA	+
Preference number: 6 (lower is better) Translates to: GWYRDSWRWSVV*LGGASWRALDQ Trigger: TTGGTCTAGAGCTCGCCAAGAAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCTCTGTACCAACC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CAA 90 bp	CAGAGACAGCTGGCGATGGTCTGTTGTGTGGCTTGGAGGTGCTTCTaGGCGAGCTCTAGACCAAGGTATAGCTTGTCCAGGTTACTCCTG	+
Preference number: 6 (lower is better) Translates to: QRQLAMVCCVAWRCF*ASSRPRYSLSRLLL Trigger: CAGGAGTAACCTGGACAAGCTATACCTTGGTCTAGAGCTCGCCAAGAAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCTCTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS TCA 72 bp	GAAACCGGAACCAGCGTATACTGGACGTGGTCACACTaGAACAGGGCCTGGAGGATCTTGCAAGCACACAAG	+
Preference number: 6 (lower is better) Translates to: ETGTSVYWTWSH*NRAWRILQAHK Trigger: CTTGTGTGCTTGCAAGATCCTCCAGGCCCTGTTTCAGTGTGACCACGTCCAGTATACGCTGGTTCCGGTTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10 ENSMUST00000115585.2
CDS GCA 72 bp	TCCTGTTTCGCTCCACTATCTCCTCTTCTAACCGTGTaGGCTTCTCTGAAGGCTCTGACCCATCACCGTCAC	+
Preference number: 6 (lower is better) Translates to: SCFAPLSPLLTV*ASLKALTHHRH Trigger: GTGACGGTGATGGGTCAGAGCCTTCAGAGAAGCGCACACGGTTAGAAGAGGAGATAGTGGAGCGAAACAGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS GCA 72 bp	AGACAGCTGGCGATGGTCTGTTGTGTGGCTTGGAGGTaGTTCTTGGCGAGCTCTAGACCAAGGTATAGCTTG	+
Preference number: 6 (lower is better) Translates to: RQLAMVCCVAWR*FLASSRPRYSL Trigger: CAAGCTATACCTTGGTCTAGAGCTCGCCAAGAAGCACCTCCAAGCCACACAACAGACCATCGCCAGCTGTCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 72 bp	TTGTCCAGGTTACTCCTGGAGAGGCTATCGAGAGCCTaGATGAAGTGGTCTGTCCCTGAGCCATCCTTCTCA	+
Preference number: 6 (lower is better) Translates to: LSRLLLERLSRA*MKWSVPEPSFS Trigger: TGAGAAGGATGGCTCAGGGACAGACCACTTCATCCAGGCTCTCGATAGCCTCTCCAGGAGTAACCTGGACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CAA 72 bp	AGGTGCTTCTTGGCGAGCTCTAGACCAAGGTATAGCTaGTCCAGGTTACTCCTGGAGAGGCTATCGAGAGCC	+
Preference number: 6 (lower is better) Translates to: RCFLASSRPRYS*SRLLLERLSRA Trigger: GGCTCTCGATAGCCTCTCCAGGAGTAACCTGGACAAGCTATACCTTGGTCTAGAGCTCGCCAAGAAGCACCT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CAA 90 bp	TCTGTCAGTCCAACAATGGCCCACCACAGCATGTCATTCAGGTCCTaGGACATCATCCACGCCAGGTCAAACATCACCATGGCCGACGAT	+
Preference number: 6 (lower is better) Translates to: SVSPTMAHHSMSFRS*DIIHARSNITMADD Trigger: ATCGTCGGCCATGGTGATGTTTGACCTGGCGTGGATGATGTCCAAGGACCTGAATGACATGCTGTGGTGGGCCATTGTTGGACTGACAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CAA 90 bp	AAGGACTTGAGCAGATGTCTGCTGAGCAGACTCAAGGATGCTGGCTaGGAAAACAGGGTGACATCTGGAGTGCCCTCCATGAGTGAGCAG	+
Preference number: 6 (lower is better) Translates to: KDLSRCLLSRLKDAG*ENRVTSGVPSMSEQ Trigger: CTGCTCACTCATGGAGGGCACTCCAGATGTCACCCTGTTTTCCAAGCCAGCATCCTTGAGTCTGCTCAGCAGACATCTGCTCAAGTCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CAA 72 bp	CCAACAATGGCCCACCACAGCATGTCATTCAGGTCCTaGGACATCATCCACGCCAGGTCAAACATCACCATG	+
Preference number: 6 (lower is better) Translates to: PTMAHHSMSFRS*DIIHARSNITM Trigger: CATGGTGATGTTTGACCTGGCGTGGATGATGTCCAAGGACCTGAATGACATGCTGTGGTGGGCCATTGTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CAA 90 bp	GGCAGCAGCTTGCATCGTCGATTCTTTGTCGAGTACACAAAGGACTaGAGCAGATGTCTGCTGAGCAGACTCAAGGATGCTGGCTTGGAA	+
Preference number: 6 (lower is better) Translates to: GSSLHRRFFVEYTKD*SRCLLSRLKDAGLE Trigger: TTCCAAGCCAGCATCCTTGAGTCTGCTCAGCAGACATCTGCTCAAGTCCTTTGTGTACTCGACAAAGAATCGACGATGCAAGCTGCTGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS TCA 72 bp	TCTCGCAGATTCCCCTTCAAGGAAACGTCCATGGACTaGAATTTCTGCTTGACTTGCTTCAGGGGAAGCCCC	+
Preference number: 6 (lower is better) Translates to: SRRFPFKETSMD*NFCLTCFRGSP Trigger: GGGGCTTCCCCTGAAGCAAGTCAAGCAGAAATTTCAGTCCATGGACGTTTCCTTGAAGGGGAATCTGCGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 72 bp	CTGAGAGGTCAAAGTAATTGTGTAGAGTCCGAGAGCTaGTGCTTTCTGCTGCCTTCTCAAAAGCCCGACCAA	+
Preference number: 6 (lower is better) Translates to: LRGQSNCVESES*CFLLPSQKPDQ Trigger: TTGGTCGGGCTTTTGAGAAGGCAGCAGAAAGCACCAGCTCTCGGACTCTACACAATTACTTTGACCTCTCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CAA 72 bp	CAAGGAAACGTCCATGGACTGAAATTTCTGCTTGACTaGCTTCAGGGGAAGCCCCATGTCTGCAAGGAACTC	+
Preference number: 6 (lower is better) Translates to: QGNVHGLKFLLD*LQGKPHVCKEL Trigger: GAGTTCCTTGCAGACATGGGGCTTCCCCTGAAGCAAGTCAAGCAGAAATTTCAGTCCATGGACGTTTCCTTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 72 bp	AGCCATCCTTCTCAGGACTCTCCATTAGAGACATGGTaGCAAAGACGACATCACTGGCCAGGAATTTATGCT	+
Preference number: 6 (lower is better) Translates to: SHPSQDSPLETW*QRRHHWPGIYA Trigger: AGCATAAATTCCTGGCCAGTGATGTCGTCTTTGCCACCATGTCTCTAATGGAGAGTCCTGAGAAGGATGGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS CCA 72 bp	CTGAGCCATCCTTCTCAGGACTCTCCATTAGAGACATaGTGGCAAAGACGACATCACTGGCCAGGAATTTAT	+
Preference number: 6 (lower is better) Translates to: LSHPSQDSPLET*WQRRHHWPGIY Trigger: ATAAATTCCTGGCCAGTGATGTCGTCTTTGCCACCATGTCTCTAATGGAGAGTCCTGAGAAGGATGGCTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS GCA 72 bp	AGAGGTCAAAGTAATTGTGTAGAGTCCGAGAGCTGGTaGTTTCTGCTGCCTTCTCAAAAGCCCGACCAAAAA	+
Preference number: 6 (lower is better) Translates to: RGQSNCVESESW*FLLPSQKPDQK Trigger: TTTTTGGTCGGGCTTTTGAGAAGGCAGCAGAAAGCACCAGCTCTCGGACTCTACACAATTACTTTGACCTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS TCA 72 bp	ACATCACTGGCCAGGAATTTATGCTTGAACCCAAACTaGATGCTGAAAGTCTGTACACGCATGTCCTTCATC	+
Preference number: 6 (lower is better) Translates to: TSLARNLCLNPN*MLKVCTRMSFI Trigger: GATGAAGGACATGCGTGTACAGACTTTCAGCATTCAGTTTGGGTTCAAGCATAAATTCCTGGCCAGTGATGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000096990.10
CDS GCA 72 bp	GATGAAATAGGAGAACTGCTCTTTATGTTCAAGATATaGAGTTTCAAGTTCTTGCCACCCAGAAACCGGAAC	+
Preference number: 6 (lower is better) Translates to: DEIGELLFMFKI*SFKFLPPRNRN Trigger: GTTCCGGTTTCTGGGTGGCAAGAACTTGAAACTGCATATCTTGAACATAAAGAGCAGTTCTCCTATTTCATC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000000028.14 ENSMUST00000115585.2
CDS CAA 90 bp	ATCTCTAAAGATGTCGTCGTAGGCAGGAACCTCAAGGTCATCCTCTaGTTTAATAAGCAATTTGATCTGCTCTTTATGTTCAAGATATGC	+
Preference number: 6 (lower is better) Translates to: ISKDVVVGRNLKVIL*FNKQFDLLFMFKIC Trigger: GCATATCTTGAACATAAAGAGCAGATCAAATTGCTTATTAAACAAGAGGATGACCTTGAGGTTCCTGCCTACGACGACATCTTTAGAGAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000096990.10