Pregenerated sensors for CDC42SE2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000052298Ensembl transcript IDs: ENSMUST00000064104.13, ENSMUST00000153209.8
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACAGCAGCTCAGGATGGATGTCTGGCATCCCATGGGGTCCCCTCTaGGCAGCACCATGGAGTGTGCAGACGCGCTCCGCTCAAGTTTCC | + |
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Preference number: 1 (lower is better) Translates to: HSSSGWMSGIPWGPL*AAPWSVQTRSAQVS Trigger: GGAAACTTGAGCGGAGCGCGTCTGCACACTCCATGGTGCTGCTCAGAGGGGACCCCATGGGATGCCAGACATCCATCCTGAGCTGCTGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 90 bp | CTCCAGGGCACCAGGCGGTGCACTGTGTACAATGTCTCACTGTGCTaGGAGGTCAGAGGCTGCCAGGACCATCAGGGGCTTCAGGAGCCT | + |
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Preference number: 1 (lower is better) Translates to: LQGTRRCTVYNVSLC*EVRGCQDHQGLQEP Trigger: AGGCTCCTGAAGCCCCTGATGGTCCTGGCAGCCTCTGACCTCTCAGCACAGTGAGACATTGTACACAGTGCACCGCCTGGTGCCCTGGAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 90 bp | GCTGATCACTGTGAATCAGCCAGGCAGCAGGTGGCTGTTGGAAGCTaGCACAGCCTCCACAGTAAGTGGAACACTGGAAGGCCAAGGACT | + |
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Preference number: 1 (lower is better) Translates to: ADHCESARQQVAVGS*HSLHSKWNTGRPRT Trigger: AGTCCTTGGCCTTCCAGTGTTCCACTTACTGTGGAGGCTGTGGCAGCTTCCAACAGCCACCTGCTGCCTGGCTGATTCACAGTGATCAGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 90 bp | GGGGAACAAAGGAGTTCCCAAGGTTTACAATCCCATGTGGGGAGGTaGGAAGTATGTCTCCCTGCACCTTTGCCGGCATCCTTAGGCCTC | + |
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Preference number: 1 (lower is better) Translates to: GEQRSSQGLQSHVGR*EVCLPAPLPASLGL Trigger: GAGGCCTAAGGATGCCGGCAAAGGTGCAGGGAGACATACTTCCCACCTCCCCACATGGGATTGTAAACCTTGGGAACTCCTTTGTTCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 90 bp | ATGGGACCTGAGCAAAGGCCTCTTACTAACCACAGAGTGTCACTGTaGGGGCTGATCACTGTGAATCAGCCAGGCAGCAGGTGGCTGTTG | + |
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Preference number: 1 (lower is better) Translates to: MGPEQRPLTNHRVSL*GLITVNQPGSRWLL Trigger: CAACAGCCACCTGCTGCCTGGCTGATTCACAGTGATCAGCCCTCACAGTGACACTCTGTGGTTAGTAAGAGGCCTTTGCTCAGGTCCCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 90 bp | TTTAATGACCACAGGGAAGCTAATGGACAAACTCTCCAGGCCCACTaGAGAAGCTGTGCCCAGCACACTGCTGCAATCTGCGGTATCTCT | + |
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Preference number: 1 (lower is better) Translates to: FNDHREANGQTLQAH*RSCAQHTAAICGIS Trigger: AGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTCCAGTGGGCCTGGAGAGTTTGTCCATTAGCTTCCCTGTGGTCATTAAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 90 bp | TGGACAAACTCTCCAGGCCCACTGGAGAAGCTGTGCCCAGCACACTaGTGCAATCTGCGGTATCTCTTGCTTACTAGTTGTTACCATGTA | + |
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Preference number: 1 (lower is better) Translates to: WTNSPGPLEKLCPAH*CNLRYLLLTSCYHV Trigger: TACATGGTAACAACTAGTAAGCAAGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTCCAGTGGGCCTGGAGAGTTTGTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 90 bp | GGAGGGGACAATGTCTCCCTGTGCTGTCCCATCTATCAGTGCCAATaGTGCCAAGAAATCCCTGTCTGTTATACAGAAAGAGTCTGCACA | + |
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Preference number: 1 (lower is better) Translates to: GGDNVSLCCPIYQCQ*CQEIPVCYTERVCT Trigger: TGTGCAGACTCTTTCTGTATAACAGACAGGGATTTCTTGGCATCATTGGCACTGATAGATGGGACAGCACAGGGAGACATTGTCCCCTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 90 bp | ACAAACTCTCCAGGCCCACTGGAGAAGCTGTGCCCAGCACACTGCTaGAATCTGCGGTATCTCTTGCTTACTAGTTGTTACCATGTATTT | + |
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Preference number: 1 (lower is better) Translates to: TNSPGPLEKLCPAHC*NLRYLLLTSCYHVF Trigger: AAATACATGGTAACAACTAGTAAGCAAGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTCCAGTGGGCCTGGAGAGTTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 90 bp | AAACAGCAACAGGTACGTAAAGAAGAGCTAACAGGACGAAGATGCTaGGAAACTGAATGGGCTTCACAACACTCAGATACAGGCTATATC | + |
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Preference number: 1 (lower is better) Translates to: KQQQVRKEELTGRRC*ETEWASQHSDTGYI Trigger: GATATAGCCTGTATCTGAGTGTTGTGAAGCCCATTCAGTTTCTCAGCATCTTCGTCCTGTTAGCTCTTCTTTACGTACCTGTTGCTGTTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 90 bp | TGGAGAAGCTGTGCCCAGCACACTGCTGCAATCTGCGGTATCTCTTaGTTACTAGTTGTTACCATGTATTTCAGAGAAGTATTAACTATA | + |
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Preference number: 1 (lower is better) Translates to: WRSCAQHTAAICGIS*LLVVTMYFREVLTI Trigger: TATAGTTAATACTTCTCTGAAATACATGGTAACAACTAGTAAGCAAGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTCCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 90 bp | GAGAAAATGGTTCTCCTTGACAGAGAAATTCTCTGTGCTCAGGATTaGCACCTAAGAACGGTAAGAATTGCAAAATCAAAGAATCAGGTC | + |
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Preference number: 1 (lower is better) Translates to: EKMVLLDREILCAQD*HLRTVRIAKSKNQV Trigger: GACCTGATTCTTTGATTTTGCAATTCTTACCGTTCTTAGGTGTCAATCCTGAGCACAGAGAATTTCTCTGTCAAGGAGAACCATTTTCTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CCA 90 bp | TTGGAACCCTCCAGGGCACCAGGCGGTGCACTGTGTACAATGTCTCACTGTGCTTGCGTCAGCCTTCAGTaGCTCTTCAGTCAGCATTCT | + |
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Preference number: 2 (lower is better) Translates to: LEPSRAPGGALCTMSHCACVSLQ*LFSQHS Trigger: AGAATGCTGACTGAAGAGCCACTGAAGGCTGACGCA...AGCACAGTGAGACATTGTACACAGTGCACCGCCTGGTGCCCTGGAGGGTTCCAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | TTGGAGCAGCAAACAGTGATGGGGGAGGGGACAATGTCTCCCTGTGCTGTCCCACTCTGTGCTCAGGATTaGCACCTAAGAACGGTAAGA | + |
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Preference number: 2 (lower is better) Translates to: LEQQTVMGEGTMSPCAVPLCAQD*HLRTVR Trigger: TCTTACCGTTCTTAGGTGTCAATCCTGAGCACAGAG...TGGGACAGCACAGGGAGACATTGTCCCCTCCCCCATCACTGTTTGCTGCTCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR GCA 90 bp | AGATCAGGCCACTGCTCTACCCTAGCAGCTCCATTTAATGACCACAGGGAAGCTGTGGCTGTTGGAAGCTaGCACAGCCTCCACAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: RSGHCSTLAAPFNDHREAVAVGS*HSLHSK Trigger: CTTACTGTGGAGGCTGTGGCAGCTTCCAACAGCCAC...AGCTTCCCTGTGGTCATTAAATGGAGCTGCTAGGGTAGAGCAGTGGCCTGATCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR GCA 90 bp | CTGGCCTTGGAGCAGCAAACAGTGATGGGGGAGGGGACAATGTCTCCCTGTGCTAGACAAGGACCTACATaGCTTCAGCACTCTAATCTC | + |
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Preference number: 2 (lower is better) Translates to: LALEQQTVMGEGTMSPCARQGPT*LQHSNL Trigger: GAGATTAGAGTGCTGAAGGCATGTAGGTCCTTGTCT...AGCACAGGGAGACATTGTCCCCTCCCCCATCACTGTTTGCTGCTCCAAGGCCAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CAA 90 bp | TTACAATCCCATGTGGGGAGGTGGGAAGTATGTCTCCCTGCACCTTaGCCGGCATCCTTAGGCCTCCATAAACACCATGTACCAGGTTAC | + |
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Preference number: 2 (lower is better) Translates to: LQSHVGRWEVCLPAP*PASLGLHKHHVPGY Trigger: GTAACCTGGTACATGGTGTTTATGGAGGCCTAAGGATGCCGGCAAAGGTGCAGGGAGACATACTTCCCACCTCCCCACATGGGATTGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | AGGACAGGGGCAGGCAAAGGCAGAAAAGAACACAGCTTCTCTAGACAAGGACCTGTAAAGAGCCTCCTCTaGAAGAGGAGCATCCTCAGG | + |
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Preference number: 2 (lower is better) Translates to: RTGAGKGRKEHSFSRQGPVKSLL*KRSILR Trigger: CCTGAGGATGCTCCTCTTTCAGAGGAGGCTCTTTAC...AGGTCCTTGTCTAGAGAAGCTGTGTTCTTTTCTGCCTTTGCCTGCCCCTGTCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CCA 90 bp | GTCCCCTCTGAGCAGCACCATGGAGTGTGCAGACGCGCTCCGCTCAAGTTTCCAGGACTATTGTGCTTGTaGGTCTCATACCTTCAAAAT | + |
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Preference number: 2 (lower is better) Translates to: VPSEQHHGVCRRAPLKFPGLLCL*VSYLQN Trigger: ATTTTGAAGGTATGAGACCCACAAGCACAATAGTCC...TGGAAACTTGAGCGGAGCGCGTCTGCACACTCCATGGTGCTGCTCAGAGGGGAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR GCA 90 bp | AGATCAGGCCACTGCTCTACCCTAGCAGCTCCATTTAATGACCACAGGGAAGCTAGGCTTTCCTTTCACTaGTCTAGTCGGACCAGAACC | + |
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Preference number: 2 (lower is better) Translates to: RSGHCSTLAAPFNDHREARLSFH*SSRTRT Trigger: GGTTCTGGTCCGACTAGAGCAGTGAAAGGAAAGCCT...AGCTTCCCTGTGGTCATTAAATGGAGCTGCTAGGGTAGAGCAGTGGCCTGATCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CCA 90 bp | AGAAATGCTTTCAGCTTTGCCTGCGTCAGCCTTCAGTGGCTCTTCAGTCAGCATATAAGGCAGAGGGGCTaGAGGTGCAATGAAAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: RNAFSFACVSLQWLFSQHIRQRG*RCNEKA Trigger: AGCCTTTTCATTGCACCTCCAGCCCCTCTGCCTTAT...ATGCTGACTGAAGAGCCACTGAAGGCTGACGCAGGCAAAGCTGAAAGCATTTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | AGAAATGCTTTCAGCTTTGCCTGCGTCAGCCTTCAGTGGCTCTTCAGTCAGCATACAGGACGAAGATGCTaGGAAACTGAATGGGCTTCA | + |
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Preference number: 2 (lower is better) Translates to: RNAFSFACVSLQWLFSQHTGRRC*ETEWAS Trigger: TGAAGCCCATTCAGTTTCTCAGCATCTTCGTCCTGT...ATGCTGACTGAAGAGCCACTGAAGGCTGACGCAGGCAAAGCTGAAAGCATTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | GAGAAGCTGTGCCCAGCACACTGCTGCAATCTGCGGTATCTCTTGCTTACTAGTCTCTGTACATTCTCTTaGCCTTATTGGAACCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: EKLCPAHCCNLRYLLLTSLCTFS*PYWNPP Trigger: TGGAGGGTTCCAATAAGGTCAAGAGAATGTACAGAG...ACTAGTAAGCAAGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | CCATCTATCAGTGCCAATGATGCCAAGAAATCCCTGTCTGTTATACAGAAAGAGTGGAGATCACAGGGGTaGACAGATTGCCGCCACACT | + |
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Preference number: 2 (lower is better) Translates to: PSISANDAKKSLSVIQKEWRSQG*TDCRHT Trigger: AGTGTGGCGGCAATCTGTTCACCCCTGTGATCTCCA...CTCTTTCTGTATAACAGACAGGGATTTCTTGGCATCATTGGCACTGATAGATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CCA 90 bp | CTCCAATTTAAAAATGAGATGTGTGACTGGGGGAACAAAGGAGTTCCCAAGGTTTCCCATGTGGGGAGGTaGGAAGTATGTCTCCCTGCA | + |
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Preference number: 2 (lower is better) Translates to: LQFKNEMCDWGNKGVPKVSHVGR*EVCLPA Trigger: TGCAGGGAGACATACTTCCCACCTCCCCACATGGGA...AACCTTGGGAACTCCTTTGTTCCCCCAGTCACACATCTCATTTTTAAATTGGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | TCAGAGGCTGCCAGGACCATCAGGGGCTTCAGGAGCCTTTGGCTTATTAATGACTGTCCATACGGTAAATaGAAGACAACAGTGAGAAAA | + |
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Preference number: 2 (lower is better) Translates to: SEAARTIRGFRSLWLINDCPYGK*KTTVRK Trigger: TTTTCTCACTGTTGTCTTTCATTTACCGTATGGACA...GTCATTAATAAGCCAAAGGCTCCTGAAGCCCCTGATGGTCCTGGCAGCCTCTGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CCA 90 bp | ATCTACAAGCCAACAGTGAGCTCACTTTATTCAAGAATGAACACAATGTACAAAGCAGCAGGTGGCTGTTaGAAGCTGCCACAGCCTCCA | + |
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Preference number: 2 (lower is better) Translates to: IYKPTVSSLYSRMNTMYKAAGGC*KLPQPP Trigger: TGGAGGCTGTGGCAGCTTCCAACAGCCACCTGCTGC...TTTGTACATTGTGTTCATTCTTGAATAAAGTGAGCTCACTGTTGGCTTGTAGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CCA 90 bp | CTGTCTGTTATACAGAAAGAGTCTGCACACAGCAGTGCCCTGGCAGGAACCTCAACAACAGTGAGAAAATaGTTCTCCTTGACAGAGAAA | + |
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Preference number: 2 (lower is better) Translates to: LSVIQKESAHSSALAGTSTTVRK*FSLTEK Trigger: TTTCTCTGTCAAGGAGAACCATTTTCTCACTGTTGT...TGAGGTTCCTGCCAGGGCACTGCTGTGTGCAGACTCTTTCTGTATAACAGACAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CAA 90 bp | CTGGAGAAGCTGTGCCCAGCACACTGCTGCAATCTGCGGTATCTCTaGCTTACTAGTTGTTACCATGTATTTCAGAGAAGTATTAACTAT | + |
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Preference number: 2 (lower is better) Translates to: LEKLCPAHCCNLRYL*LTSCYHVFQRSINY Trigger: ATAGTTAATACTTCTCTGAAATACATGGTAACAACTAGTAAGCAAGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTCCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | ATCAGTGCCAATGATGCCAAGAAATCCCTGTCTGTTATACAGAAAGAGTCTGCAGGGCTGGAGGTGCAATaGAAAGGCTTAAAATGGAAA | + |
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Preference number: 2 (lower is better) Translates to: ISANDAKKSLSVIQKESAGLEVQ*KGLKWK Trigger: TTTCCATTTTAAGCCTTTTCATTGCACCTCCAGCCC...TGCAGACTCTTTCTGTATAACAGACAGGGATTTCTTGGCATCATTGGCACTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | ATCTACAAGCCAACAGTGAGCTCACTTTATTCAAGAATGAACACAATGTACAAAAATGTCTCACTGTGCTaGGAGGTCAGAGGCTGCCAG | + |
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Preference number: 2 (lower is better) Translates to: IYKPTVSSLYSRMNTMYKNVSLC*EVRGCQ Trigger: CTGGCAGCCTCTGACCTCTCAGCACAGTGAGACATT...TTTGTACATTGTGTTCATTCTTGAATAAAGTGAGCTCACTGTTGGCTTGTAGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CCA 90 bp | ATCAGTGCCAATGATGCCAAGAAATCCCTGTCTGTTATACAGAAAGAGTCTGCAGGACCAGAACCCATTTaGAATATCTGTAAAGAGCCT | + |
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Preference number: 2 (lower is better) Translates to: ISANDAKKSLSVIQKESAGPEPI*NICKEP Trigger: AGGCTCTTTACAGATATTCCAAATGGGTTCTGGTCC...TGCAGACTCTTTCTGTATAACAGACAGGGATTTCTTGGCATCATTGGCACTGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR TCA 90 bp | CTCCAATTTAAAAATGAGATGTGTGACTGGGGGAACAAAGGAGTTCCCAAGGTTCAAGTTTCCAACAGATaGAAAGGACTATTGTGCTTG | + |
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Preference number: 2 (lower is better) Translates to: LQFKNEMCDWGNKGVPKVQVSNR*KGLLCL Trigger: CAAGCACAATAGTCCTTTTCATCTGTTGGAAACTTG...AACCTTGGGAACTCCTTTGTTCCCCCAGTCACACATCTCATTTTTAAATTGGAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | AGCATCCTCAGGCCACAGCAGCTCAGGATGGATGTCTaGCATCCCATGGGGTCCCCTCTGAGCAGCACCATG | + |
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Preference number: 3 (lower is better) Translates to: SILRPQQLRMDV*HPMGSPLSSTM Trigger: CATGGTGCTGCTCAGAGGGGACCCCATGGGATGCCAGACATCCATCCTGAGCTGCTGTGGCCTGAGGATGCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 72 bp | ACCAGGCGGTGCACTGTGTACAATGTCTCACTGTGCTaGGAGGTCAGAGGCTGCCAGGACCATCAGGGGCTT | + |
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Preference number: 3 (lower is better) Translates to: TRRCTVYNVSLC*EVRGCQDHQGL Trigger: AAGCCCCTGATGGTCCTGGCAGCCTCTGACCTCTCAGCACAGTGAGACATTGTACACAGTGCACCGCCTGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 72 bp | TCCCATGGGGTCCCCTCTGAGCAGCACCATGGAGTGTaGAGACGCGCTCCGCTCAAGTTTCCAACAGATGAA | + |
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Preference number: 3 (lower is better) Translates to: SHGVPSEQHHGV*RRAPLKFPTDE Trigger: TTCATCTGTTGGAAACTTGAGCGGAGCGCGTCTGCACACTCCATGGTGCTGCTCAGAGGGGACCCCATGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CAA 90 bp | CCCATGGGGTCCCCTCTGAGCAGCACCATGGAGTGTGCAGACGCGCTCCGCTCAAAAGGACTATTGTGCTaGTGGGTCTCATACCTTCAA | + |
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Preference number: 3 (lower is better) Translates to: PMGSPLSSTMECADALRSKGLLC*WVSYLQ Trigger: TTGAAGGTATGAGACCCACAAGCACAATAGTCCTTT...TGAGCGGAGCGCGTCTGCACACTCCATGGTGCTGCTCAGAGGGGACCCCATGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 72 bp | TGTGAATCAGCCAGGCAGCAGGTGGCTGTTGGAAGCTaGCACAGCCTCCACAGTAAGTGGAACACTGGAAGG | + |
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Preference number: 3 (lower is better) Translates to: CESARQQVAVGS*HSLHSKWNTGR Trigger: CCTTCCAGTGTTCCACTTACTGTGGAGGCTGTGGCAGCTTCCAACAGCCACCTGCTGCCTGGCTGATTCACA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | TCTGCACACAGCAGTGCCCTGGCAGGAACCTCACCCTaGCTAAGCAGAATGACAGACTCTAGAGTGCAGTGT | + |
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Preference number: 3 (lower is better) Translates to: SAHSSALAGTSP*LSRMTDSRVQC Trigger: ACACTGCACTCTAGAGTCTGTCATTCTGCTTAGCCAGGGTGAGGTTCCTGCCAGGGCACTGCTGTGTGCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | GAGGCTGCCAGGACCATCAGGGGCTTCAGGAGCCTTTaGCTTATTAATGACTGGCCTTGGAGCAGCAAACAG | + |
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Preference number: 3 (lower is better) Translates to: EAARTIRGFRSL*LINDWPWSSKQ Trigger: CTGTTTGCTGCTCCAAGGCCAGTCATTAATAAGCCAAAGGCTCCTGAAGCCCCTGATGGTCCTGGCAGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | AGGAGTTCCCAAGGTTTACAATCCCATGTGGGGAGGTaGGAAGTATGTCTCCCTGCACCTTTGCCGGCATCC | + |
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Preference number: 3 (lower is better) Translates to: RSSQGLQSHVGR*EVCLPAPLPAS Trigger: GGATGCCGGCAAAGGTGCAGGGAGACATACTTCCCACCTCCCCACATGGGATTGTAAACCTTGGGAACTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR-3UTR CAA 90 bp | CTGGCCTTGGAGCAGCAAACAGTGATGGGGGAGGGGACAATGTCTCCCTGTGCTTCTCTGTGCTCAGGATaGACACCTAAGAACGGTAAG | + |
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Preference number: 3 (lower is better) Translates to: LALEQQTVMGEGTMSPCASLCSG*TPKNGK Trigger: CTTACCGTTCTTAGGTGTCAATCCTGAGCACAGAGA...AGCACAGGGAGACATTGTCCCCTCCCCCATCACTGTTTGCTGCTCCAAGGCCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 72 bp | GAGCAAAGGCCTCTTACTAACCACAGAGTGTCACTGTaGGGGCTGATCACTGTGAATCAGCCAGGCAGCAGG | + |
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Preference number: 3 (lower is better) Translates to: EQRPLTNHRVSL*GLITVNQPGSR Trigger: CCTGCTGCCTGGCTGATTCACAGTGATCAGCCCTCACAGTGACACTCTGTGGTTAGTAAGAGGCCTTTGCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 72 bp | TGGCTTATTAATGACTGGCCTTGGAGCAGCAAACAGTaGTGGGGGAGGGGACAATGTCTCCCTGTGCTGTCC | + |
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Preference number: 3 (lower is better) Translates to: WLINDWPWSSKQ*WGRGQCLPVLS Trigger: GGACAGCACAGGGAGACATTGTCCCCTCCCCCATCACTGTTTGCTGCTCCAAGGCCAGTCATTAATAAGCCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 72 bp | CCAGGCCCACTGGAGAAGCTGTGCCCAGCACACTGCTaGAATCTGCGGTATCTCTTGCTTACTAGTTGTTAC | + |
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Preference number: 3 (lower is better) Translates to: PGPLEKLCPAHC*NLRYLLLTSCY Trigger: GTAACAACTAGTAAGCAAGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTCCAGTGGGCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 72 bp | TCTCCAGGCCCACTGGAGAAGCTGTGCCCAGCACACTaGTGCAATCTGCGGTATCTCTTGCTTACTAGTTGT | + |
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Preference number: 3 (lower is better) Translates to: SPGPLEKLCPAH*CNLRYLLLTSC Trigger: ACAACTAGTAAGCAAGAGATACCGCAGATTGCAGCAGTGTGCTGGGCACAGCTTCTCCAGTGGGCCTGGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | AGAAATGCTTTCAGCTTTGCCTGCGTCAGCCTTCAGTaGCTCTTCAGTCAGCATTCTCAGGACAGGGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: RNAFSFACVSLQ*LFSQHSQDRGR Trigger: CCTGCCCCTGTCCTGAGAATGCTGACTGAAGAGCCACTGAAGGCTGACGCAGGCAAAGCTGAAAGCATTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 72 bp | TGCCAAGAAATCCCTGTCTGTTATACAGAAAGAGTCTaGACACAGCAGTGCCCTGGCAGGAACCTCACCCTG | + |
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Preference number: 3 (lower is better) Translates to: CQEIPVCYTERV*TQQCPGRNLTL Trigger: CAGGGTGAGGTTCCTGCCAGGGCACTGCTGTGTGCAGACTCTTTCTGTATAACAGACAGGGATTTCTTGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | GGGAACAAAGGAGTTCCCAAGGTTTACAATCCCATGTaGGGAGGTGGGAAGTATGTCTCCCTGCACCTTTGC | + |
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Preference number: 3 (lower is better) Translates to: GNKGVPKVYNPM*GGGKYVSLHLC Trigger: GCAAAGGTGCAGGGAGACATACTTCCCACCTCCCCACATGGGATTGTAAACCTTGGGAACTCCTTTGTTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 72 bp | CAAGCAACCGCCTCTGAACGCAGGCTTTCCTTTCACTaGTCTAGTCGGACCAGAACCCATTTGGAATATCTG | + |
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Preference number: 3 (lower is better) Translates to: QATASERRLSFH*SSRTRTHLEYL Trigger: CAGATATTCCAAATGGGTTCTGGTCCGACTAGAGCAGTGAAAGGAAAGCCTGCGTTCAGAGGCGGTTGCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | CCAGCTACCTATACTCAGCAGGGAAGAGGAACAGAATaGGACCTGAGCAAAGGCCTCTTACTAACCACAGAG | + |
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Preference number: 3 (lower is better) Translates to: PATYTQQGRGTE*DLSKGLLLTTE Trigger: CTCTGTGGTTAGTAAGAGGCCTTTGCTCAGGTCCCATTCTGTTCCTCTTCCCTGCTGAGTATAGGTAGCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CCA 72 bp | TTTCCTTTCACTGCTCTAGTCGGACCAGAACCCATTTaGAATATCTGTAAAGAGCCTCCTCTGAAAGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: FPFTALVGPEPI*NICKEPPLKEE Trigger: CTCCTCTTTCAGAGGAGGCTCTTTACAGATATTCCAAATGGGTTCTGGTCCGACTAGAGCAGTGAAAGGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 72 bp | CAGGTACGTAAAGAAGAGCTAACAGGACGAAGATGCTaGGAAACTGAATGGGCTTCACAACACTCAGATACA | + |
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Preference number: 3 (lower is better) Translates to: QVRKEELTGRRC*ETEWASQHSDT Trigger: TGTATCTGAGTGTTGTGAAGCCCATTCAGTTTCTCAGCATCTTCGTCCTGTTAGCTCTTCTTTACGTACCTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 72 bp | AATGTCTCCCTGTGCTGTCCCATCTATCAGTGCCAATaGTGCCAAGAAATCCCTGTCTGTTATACAGAAAGA | + |
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Preference number: 3 (lower is better) Translates to: NVSLCCPIYQCQ*CQEIPVCYTER Trigger: TCTTTCTGTATAACAGACAGGGATTTCTTGGCATCATTGGCACTGATAGATGGGACAGCACAGGGAGACATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR GCA 72 bp | CTGTGCTCAGGATTGACACCTAAGAACGGTAAGAATTaGAAAATCAAAGAATCAGGTCATCCAGTGTTCCAC | + |
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Preference number: 3 (lower is better) Translates to: LCSGLTPKNGKN*KIKESGHPVFH Trigger: GTGGAACACTGGATGACCTGATTCTTTGATTTTGCAATTCTTACCGTTCTTAGGTGTCAATCCTGAGCACAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 72 bp | ATGACAGACTCTAGAGTGCAGTGTCCATACGGTAAATaGAAGACAACAGTGAGAAAATGGTTCTCCTTGACA | + |
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Preference number: 3 (lower is better) Translates to: MTDSRVQCPYGK*KTTVRKWFSLT Trigger: TGTCAAGGAGAACCATTTTCTCACTGTTGTCTTTCATTTACCGTATGGACACTGCACTCTAGAGTCTGTCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR TCA 72 bp | GTTCTCCTTGACAGAGAAATTCTCTGTGCTCAGGATTaGCACCTAAGAACGGTAAGAATTGCAAAATCAAAG | + |
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Preference number: 3 (lower is better) Translates to: VLLDREILCAQD*HLRTVRIAKSK Trigger: CTTTGATTTTGCAATTCTTACCGTTCTTAGGTGTCAATCCTGAGCACAGAGAATTTCTCTGTCAAGGAGAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR GCA 90 bp | CCCATGGGGTCCCCTCTGAGCAGCACCATGGAGTGTGCAGACGCGCTCCGCTCAAGGCTGAGGCTGCTCTaGAATACAGCAGTTGAAACA | + |
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Preference number: 4 (lower is better) Translates to: PMGSPLSSTMECADALRSRLRLL*NTAVET Trigger: TGTTTCAACTGCTGTATTGCAGAGCAGCCTCAGCCT...TGAGCGGAGCGCGTCTGCACACTCCATGGTGCTGCTCAGAGGGGACCCCATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR GCA 90 bp | CACAGCCTCCACAGTAAGTGGAACACTGGAAGGCCAAGGACTCTGCAAGTCACATCCACGAGCTGCATCTaGACGTTGGCAGGCATTCCA | + |
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Preference number: 4 (lower is better) Translates to: HSLHSKWNTGRPRTLQVTSTSCI*TLAGIP Trigger: TGGAATGCCTGCCAACGTGCAGATGCAGCTCGTGGA...TGTGACTTGCAGAGTCCTTGGCCTTCCAGTGTTCCACTTACTGTGGAGGCTGTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CAA 72 bp | CATGTGGGGAGGTGGGAAGTATGTCTCCCTGCACCTTaGCCGGCATCCTTAGGCCTCCATAAACACCATGTA | + |
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Preference number: 4 (lower is better) Translates to: HVGRWEVCLPAP*PASLGLHKHHV Trigger: TACATGGTGTTTATGGAGGCCTAAGGATGCCGGCAAAGGTGCAGGGAGACATACTTCCCACCTCCCCACATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| 3UTR CAA 72 bp | ATGTACCAGGTTACTCTGTACATTCTCTTGACCTTATaGGAACCCTCCAGGGCACCAGGCGGTGCACTGTGT | + |
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Preference number: 4 (lower is better) Translates to: MYQVTLYILLTL*EPSRAPGGALC Trigger: ACACAGTGCACCGCCTGGTGCCCTGGAGGGTTCCAATAAGGTCAAGAGAATGTACAGAGTAACCTGGTACAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR TCA 90 bp | CCATCTATCAGTGCCAATGATGCCAAGAAATCCCTGTCTGTTATACAGAAAGAGCGTCGCCTCTTAGGCTaGGGCTGCTCTGCAATACAG | + |
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Preference number: 4 (lower is better) Translates to: PSISANDAKKSLSVIQKERRLLG*GCSAIQ Trigger: CTGTATTGCAGAGCAGCCTCAGCCTAAGAGGCGACG...CTCTTTCTGTATAACAGACAGGGATTTCTTGGCATCATTGGCACTGATAGATGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR CCA 90 bp | CCAATGATGCCAAGAAATCCCTGTCTGTTATACAGAAAGAGTCTGCACACAGCAGTGCACAAAGTTGGTTaGCTCTCCGATCATACTTCG | + |
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Preference number: 4 (lower is better) Translates to: PMMPRNPCLLYRKSLHTAVHKVG*LSDHTS Trigger: CGAAGTATGATCGGAGAGCCAACCAACTTTGTGCAC...TGCTGTGTGCAGACTCTTTCTGTATAACAGACAGGGATTTCTTGGCATCATTGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR CCA 90 bp | ATCTACAAGCCAACAGTGAGCTCACTTTATTCAAGAATGAACACAATGTACAAAGCTGCATCTGCACGTTaGCAGGCATTCCACCTCCAT | + |
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Preference number: 4 (lower is better) Translates to: IYKPTVSSLYSRMNTMYKAASAR*QAFHLH Trigger: ATGGAGGTGGAATGCCTGCCAACGTGCAGATGCAGC...TTTGTACATTGTGTTCATTCTTGAATAAAGTGAGCTCACTGTTGGCTTGTAGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR TCA 90 bp | CTCCAATTTAAAAATGAGATGTGTGACTGGGGGAACAAAGGAGTTCCCAAGGTTCTGCAATACAGCAGTTaGAACACAACCAGAATTCAC | + |
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Preference number: 4 (lower is better) Translates to: LQFKNEMCDWGNKGVPKVLQYSS*NTTRIH Trigger: GTGAATTCTGGTTGTGTTTCAACTGCTGTATTGCAG...AACCTTGGGAACTCCTTTGTTCCCCCAGTCACACATCTCATTTTTAAATTGGAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR TCA 90 bp | ATCTACAAGCCAACAGTGAGCTCACTTTATTCAAGAATGAACACAATGTACAAATCTCCGGATCCTACGTaGGCTGTGTGCACAAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: IYKPTVSSLYSRMNTMYKSPDPT*AVCTKL Trigger: CAACTTTGTGCACACAGCTCACGTAGGATCCGGAGA...TTTGTACATTGTGTTCATTCTTGAATAAAGTGAGCTCACTGTTGGCTTGTAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR CCA 90 bp | ATCTACAAGCCAACAGTGAGCTCACTTTATTCAAGAATGAACACAATGTACAAACTGTGTGCACAAAGTTaGTTGGCTCTCCGATCATAC | + |
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Preference number: 4 (lower is better) Translates to: IYKPTVSSLYSRMNTMYKLCAQS*LALRSY Trigger: GTATGATCGGAGAGCCAACCAACTTTGTGCACACAG...TTTGTACATTGTGTTCATTCTTGAATAAAGTGAGCTCACTGTTGGCTTGTAGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR CAA 90 bp | CCCATGGGGTCCCCTCTGAGCAGCACCATGGAGTGTGCAGACGCGCTCCGCTCATGTGCACAAAGTTGGTaGGCTCTCCGATCATACTTC | + |
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Preference number: 5 (lower is better) Translates to: PMGSPLSSTMECADALRSCAQSW*ALRSYF Trigger: GAAGTATGATCGGAGAGCCAACCAACTTTGTGCACA...TGAGCGGAGCGCGTCTGCACACTCCATGGTGCTGCTCAGAGGGGACCCCATGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS-3UTR CAA 90 bp | AGATCAGGCCACTGCTCTACCCTAGCAGCTCCATTTAATGACCACAGGGAAGCTAGCTGCATCTGCACGTaGGCAGGCATTCCACCTCCA | + |
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Preference number: 5 (lower is better) Translates to: RSGHCSTLAAPFNDHREASCICT*AGIPPP Trigger: TGGAGGTGGAATGCCTGCCAACGTGCAGATGCAGCT...AGCTTCCCTGTGGTCATTAAATGGAGCTGCTAGGGTAGAGCAGTGGCCTGATCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS TCA 90 bp | GGCTCTCCGATCATACTTCGGTCAATCCGTCGTCGCCTCTTAGGCTaGGGCTGCTCTGCAATACAGCAGTTGAAACACAACCAGAATTCA | + |
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Preference number: 5 (lower is better) Translates to: GSPIILRSIRRRLLG*GCSAIQQLKHNQNS Trigger: TGAATTCTGGTTGTGTTTCAACTGCTGTATTGCAGAGCAGCCTCAGCCTAAGAGGCGACGACGGATTGACCGAAGTATGATCGGAGAGCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064104.13 ENSMUST00000153209.8 |
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| CDS TCA 90 bp | GAGCTGACTGAGTTCATCCCACTAAATAGGTCTCCGGATCCTACGTaGGCTGTGTGCACAAAGTTGGTTGGCTCTCCGATCATACTTCGG | + |
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Preference number: 5 (lower is better) Translates to: ELTEFIPLNRSPDPT*AVCTKLVGSPIILR Trigger: CCGAAGTATGATCGGAGAGCCAACCAACTTTGTGCACACAGCTCACGTAGGATCCGGAGACCTATTTAGTGGGATGAACTCAGTCAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS CCA 72 bp | ATCCTGCCTTGGTGTCCACGAGCTGCATCTGCACGTTaGCAGGCATTCCACCTCCATAGCCTCCCTTGGACT | + |
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Preference number: 6 (lower is better) Translates to: ILPWCPRAASAR*QAFHLHSLPWT Trigger: AGTCCAAGGGAGGCTATGGAGGTGGAATGCCTGCCAACGTGCAGATGCAGCTCGTGGACACCAAGGCAGGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000064104.13 |
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| CDS TCA 72 bp | GAGTTCATCCCACTAAATAGGTCTCCGGATCCTACGTaGGCTGTGTGCACAAAGTTGGTTGGCTCTCCGATC | + |
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Preference number: 6 (lower is better) Translates to: EFIPLNRSPDPT*AVCTKLVGSPI Trigger: GATCGGAGAGCCAACCAACTTTGTGCACACAGCTCACGTAGGATCCGGAGACCTATTTAGTGGGATGAACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064104.13 ENSMUST00000153209.8 |
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| CDS GCA 72 bp | GTCAATCCGTCGTCGCCTCTTAGGCTGAGGCTGCTCTaGAATACAGCAGTTGAAACACAACCAGAATTCACT | + |
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Preference number: 6 (lower is better) Translates to: VNPSSPLRLRLL*NTAVETQPEFT Trigger: AGTGAATTCTGGTTGTGTTTCAACTGCTGTATTGCAGAGCAGCCTCAGCCTAAGAGGCGACGACGGATTGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000064104.13 ENSMUST00000153209.8 |
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