Pregenerated sensors for CDC42SE1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046722Ensembl transcript IDs: ENSMUST00000053872.12, ENSMUST00000107199.2, ENSMUST00000107200.8, ENSMUST00000107201.9
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CCCCAGCTCAGATCAAGGGTGTGCAGGGCTTCAGCGGAGCTCCTCTaGCCCACCAGTAGTCACTTGGTCAGTCCTGCTGCCTTGACCCCC | + |
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Preference number: 1 (lower is better) Translates to: PQLRSRVCRASAELL*PTSSHLVSPAALTP Trigger: GGGGGTCAAGGCAGCAGGACTGACCAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCTGCACACCCTTGATCTGAGCTGGGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR TCA 90 bp | CCTGGTGCCAGCGGAGAGACATGGCGGGGCTGTGACCTTAAGGTCTaGAATTCCGAGCGGACTGGGCAGTGGTCACCTAGCCCCATCACC | + |
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Preference number: 1 (lower is better) Translates to: PGASGETWRGCDLKV*NSERTGQWSPSPIT Trigger: GGTGATGGGGCTAGGTGACCACTGCCCAGTCCGCTCGGAATTTCAGACCTTAAGGTCACAGCCCCGCCATGTCTCTCCGCTGGCACCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR GCA 90 bp | ACCCATTCCAGGTTCCCAGAGAACCCCCAGCTCAGATCAAGGGTGTaGAGGGCTTCAGCGGAGCTCCTCTGGCCCACCAGTAGTCACTTG | + |
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Preference number: 1 (lower is better) Translates to: THSRFPENPQLRSRV*RASAELLWPTSSHL Trigger: CAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCTGCACACCCTTGATCTGAGCTGGGGGTTCTCTGGGAACCTGGAATGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107201.9 |
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| 3UTR TCA 90 bp | CTCCAGTTAACCCCACACAGTGCCCAACCTTTCGCCACTGTGACCTaGCATTCATGGCCTTCCTGGGAGCATGCTGCTAGGGGCACAGGA | + |
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Preference number: 1 (lower is better) Translates to: LQLTPHSAQPFATVT*HSWPSWEHAARGTG Trigger: TCCTGTGCCCCTAGCAGCATGCTCCCAGGAAGGCCATGAATGTCAGGTCACAGTGGCGAAAGGTTGGGCACTGTGTGGGGTTAACTGGAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CCA 90 bp | CGTAACTGTCCTGTCCTCCCATCCCAGCACACCCCGTTCCCGTCTTaGCACTGTGAAAGGCCCTCTTGCAGAGATCAAGAACAGAGACGG | + |
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Preference number: 1 (lower is better) Translates to: RNCPVLPSQHTPFPS*HCERPSCRDQEQRR Trigger: CCGTCTCTGTTCTTGATCTCTGCAAGAGGGCCTTTCACAGTGCCAAGACGGGAACGGGGTGTGCTGGGATGGGAGGACAGGACAGTTACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CCA 90 bp | AGAGTATCCACCAGAAGACTGTGCTCAAAGAAACTGACACAAGACTaGAGCTCAGGGGTCACCCACACCGTGTCCTCTCCAGTTAACCCC | + |
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Preference number: 1 (lower is better) Translates to: RVSTRRLCSKKLTQD*SSGVTHTVSSPVNP Trigger: GGGGTTAACTGGAGAGGACACGGTGTGGGTGACCCCTGAGCTCCAGTCTTGTGTCAGTTTCTTTGAGCACAGTCTTCTGGTGGATACTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CCA 90 bp | GCCCTTGGGTCACTGGTTGAAGGGATCTGGTGGTGGCATTTCTTTTaGGCTGGACACAGAATCACAGAATGGGAACTCCAAGACTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: ALGSLVEGIWWWHFF*AGHRITEWELQDCR Trigger: TCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAGTGACCCAAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR TCA 90 bp | ACGGGATGGCTGGAGTCGCCAGGAGCGGATCAGTTTCCACAACCCTaGCCCATTACCACAAAACAAGCTTCCTATTACAGAGCTAATGAG | + |
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Preference number: 1 (lower is better) Translates to: TGWLESPGADQFPQP*PITTKQASYYRANE Trigger: CTCATTAGCTCTGTAATAGGAAGCTTGTTTTGTGGTAATGGGTCAGGGTTGTGGAAACTGATCCGCTCCTGGCGACTCCAGCCATCCCGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR TCA 90 bp | GCCTTTCTAATCAGCCTGCAAAGAAAGGGCCAGAATGACAACACCTaGGAAAACAAAAGGCCTACAGACTCCGTTTCTACAGTACTTTCC | + |
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Preference number: 1 (lower is better) Translates to: AFLISLQRKGQNDNT*ENKRPTDSVSTVLS Trigger: GGAAAGTACTGTAGAAACGGAGTCTGTAGGCCTTTTGTTTTCTCAGGTGTTGTCATTCTGGCCCTTTCTTTGCAGGCTGATTAGAAAGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR GCA 90 bp | AGGAAGAATTTAGCAAACTCGGGGTTCAGCTGTGGCTCCCACTCCTaGCTGCCTCGATTAGAGAATAAAAGCAAGAAGTTTAAACAGGTA | + |
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Preference number: 1 (lower is better) Translates to: RKNLANSGFSCGSHS*LPRLENKSKKFKQV Trigger: TACCTGTTTAAACTTCTTGCTTTTATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACAGCTGAACCCCGAGTTTGCTAAATTCTTCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| 3UTR CCA 90 bp | AATATAAATTACGACTCGCAAACTCATTCCAATCACCTTGTTAAGTaGTGGCAGCAGACACACAGAGAAGGTAGCTCGATGCAGGAGAGT | + |
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Preference number: 1 (lower is better) Translates to: NINYDSQTHSNHLVK*WQQTHREGSSMQES Trigger: ACTCTCCTGCATCGAGCTACCTTCTCTGTGTGTCTGCTGCCACCACTTAACAAGGTGATTGGAATGAGTTTGCGAGTCGTAATTTATATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR TCA 90 bp | AGGGCTTCAGCGGAGCTCCTCTGGCCCACCAGTAGTCACTTGGTCAGTCCTGCTCCTTGGGTCACTGGTTaGAGGGATCTGGTGGTGGCA | + |
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Preference number: 2 (lower is better) Translates to: RASAELLWPTSSHLVSPAPWVTG*RDLVVA Trigger: TGCCACCACCAGATCCCTTCAACCAGTGACCCAAGG...AGCAGGACTGACCAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR-3UTR TCA 90 bp | GGGTTCAGCTGTGGCTCCCACTCCTGCCTGCCTCGATTAGAGAATAAAAGCAAGTCAGTCCTGCTGCCTTaGCCCCCATCTCCAGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: GFSCGSHSCLPRLENKSKSVLLP*PPSPGG Trigger: CCCTCCTGGAGATGGGGGTCAAGGCAGCAGGACTGA...CTTGCTTTTATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACAGCTGAACCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| 3UTR-3UTR GCA 90 bp | GAAATTCCGAGCGGACTGGGCAGTGGTCACCTAGCCCCATCACCTCTGTGTTGTCTTGGTCAGTCCTGCTaGCTTGACCCCCATCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: EIPSGLGSGHLAPSPLCCLGQSC*LDPHLQ Trigger: CTGGAGATGGGGGTCAAGGCAGCAGGACTGACCAAG...ACAACACAGAGGTGATGGGGCTAGGTGACCACTGCCCAGTCCGCTCGGAATTTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR GCA 90 bp | CGACCTTCATTCAGGAGCAAGGAACCCATTCCAGGTTCCCAGAGAACCCCCAGCCTTGGTCAGTCCTGCTaGCTTGACCCCCATCTCCAG | + |
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Preference number: 2 (lower is better) Translates to: RPSFRSKEPIPGSQRTPSLGQSC*LDPHLQ Trigger: CTGGAGATGGGGGTCAAGGCAGCAGGACTGACCAAG...GCTGGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107201.9 |
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| 3UTR-3UTR TCA 90 bp | GTTAAGTGGTGGCAGCAGACACACAGAGAAGGTAGCTCGATGCAGGAGAGTATCTCAGTCCTGCTGCCTTaGCCCCCATCTCCAGGAGGG | + |
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Preference number: 2 (lower is better) Translates to: VKWWQQTHREGSSMQESISVLLP*PPSPGG Trigger: CCCTCCTGGAGATGGGGGTCAAGGCAGCAGGACTGA...GATACTCTCCTGCATCGAGCTACCTTCTCTGTGTGTCTGCTGCCACCACTTAAC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR GCA 90 bp | ACCCGACCTTCATTCAGGAGCAAGGAACCCATTCCAGGTTCCCAGAGAACCCCCTGGGAACTCCAAGACTaGAGAACCAGTCCCATGGGA | + |
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Preference number: 2 (lower is better) Translates to: TRPSFRSKEPIPGSQRTPWELQD*RTSPMG Trigger: TCCCATGGGACTGGTTCTGCAGTCTTGGAGTTCCCA...GGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTCGGGT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107201.9 |
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| 3UTR-3UTR CCA 90 bp | AGGAGCGGATCAGTTTCCACAACCCTGACCCATTACCACAAAACAAGCTTCCTACTCGGGGTTCAGCTGTaGCTCCCACTCCTGCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: RSGSVSTTLTHYHKTSFLLGVQL*LPLLPA Trigger: GGCAGGCAGGAGTGGGAGCCACAGCTGAACCCCGAG...TAGGAAGCTTGTTTTGTGGTAATGGGTCAGGGTTGTGGAAACTGATCCGCTCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CCA 90 bp | AGGAGCGGATCAGTTTCCACAACCCTGACCCATTACCACAAAACAAGCTTCCTAGCAGGGGGTCGGGGGTaGGGAAGAGATGCTGTAGTC | + |
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Preference number: 2 (lower is better) Translates to: RSGSVSTTLTHYHKTSFLAGGRG*GRDAVV Trigger: GACTACAGCATCTCTTCCCCACCCCCGACCCCCTGC...TAGGAAGCTTGTTTTGTGGTAATGGGTCAGGGTTGTGGAAACTGATCCGCTCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR GCA 90 bp | CTTGGGTCACTGGTTGAAGGGATCTGGTGGTGGCATTTCTTTTGGGCTGGACACTGGGAACTCCAAGACTaGAGAACCAGTCCCATGGGA | + |
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Preference number: 2 (lower is better) Translates to: LGSLVEGIWWWHFFWAGHWELQD*RTSPMG Trigger: TCCCATGGGACTGGTTCTGCAGTCTTGGAGTTCCCA...GTGTCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAGTGACCCAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR-3UTR CCA 90 bp | AGGGCTTCAGCGGAGCTCCTCTGGCCCACCAGTAGTCACTTGGTCAGTCCTGCTGCATTTCTTTTGGGCTaGACACAGAATCACAGAATG | + |
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Preference number: 2 (lower is better) Translates to: RASAELLWPTSSHLVSPAAFLLG*TQNHRM Trigger: CATTCTGTGATTCTGTGTCCAGCCCAAAAGAAATGC...AGCAGGACTGACCAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR-3UTR CCA 90 bp | CTGCAAGCTCCTCCCTTAAAGGAGGCAGGCCTGAACCACAAGGAGGCAAACTCCGTTGAAGGGATCTGGTaGTGGCATTTCTTTTGGGCT | + |
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Preference number: 2 (lower is better) Translates to: LQAPPLKEAGLNHKEANSVEGIW*WHFFWA Trigger: AGCCCAAAAGAAATGCCACCACCAGATCCCTTCAAC...GGAGTTTGCCTCCTTGTGGTTCAGGCCTGCCTCCTTTAAGGGAGGAGCTTGCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CAA 90 bp | TCCGAGCGGACTGGGCAGTGGTCACCTAGCCCCATCACCTCTGTGTaGTTCATTCCAGAAGGAAAGAGTACAGGGAAGCAGGAAGAATTT | + |
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Preference number: 2 (lower is better) Translates to: SERTGQWSPSPITSV*FIPEGKSTGKQEEF Trigger: AAATTCTTCCTGCTTCCCTGTACTCTTTCCTTCTGGAATGAACAACACAGAGGTGATGGGGCTAGGTGACCACTGCCCAGTCCGCTCGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CCA 90 bp | ACCCGACCTTCATTCAGGAGCAAGGAACCCATTCCAGGTTCCCAGAGAACCCCCCACAGAATCACAGAATaGGAACTCCAAGACTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: TRPSFRSKEPIPGSQRTPHRITE*ELQDCR Trigger: TCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTG...GGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTCGGGT 52% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 3 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107201.9 |
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| 3UTR-3UTR GCA 90 bp | TCACTGGTTGAAGGGATCTGGTGGTGGCATTTCTTTTGGGCTGGACACAGAATCTGGGAACTCCAAGACTaGAGAACCAGTCCCATGGGA | + |
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Preference number: 2 (lower is better) Translates to: SLVEGIWWWHFFWAGHRIWELQD*RTSPMG Trigger: TCCCATGGGACTGGTTCTGCAGTCTTGGAGTTCCCA...GATTCTGTGTCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAGTGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR CAA 90 bp | TACCTTGACTCTCAAGCTGTGGGTAACTTCATCCCTGGGAGACATTaGGCAATTTCTGGAGATATTTTGGTTGCCACACTGGGCAGGGGG | + |
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Preference number: 2 (lower is better) Translates to: YLDSQAVGNFIPGRH*AISGDILVATLGRG Trigger: CCCCCTGCCCAGTGTGGCAACCAAAATATCTCCAGAAATTGCCAAATGTCTCCCAGGGATGAAGTTACCCACAGCTTGAGAGTCAAGGTA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CCA 90 bp | AAACTCATTCCAATCACCTTGTTAAGTGGTGGCAGCAGACACACAGAGAAGGTATCAGCGGAGCTCCTCTaGCCCACCAGTAGTCACTTG | + |
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Preference number: 2 (lower is better) Translates to: KLIPITLLSGGSRHTEKVSAELL*PTSSHL Trigger: CAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGA...TACCTTCTCTGTGTGTCTGCTGCCACCACTTAACAAGGTGATTGGAATGAGTTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR GCA 90 bp | CCATGTGGAAGTCACTTAAGGAAAACATACCTTGACTCTCAAGCTGTGGGTAACTGTGGCTCCCACTCCTaGCTGCCTCGATTAGAGAAT | + |
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Preference number: 2 (lower is better) Translates to: PCGSHLRKTYLDSQAVGNCGSHS*LPRLEN Trigger: ATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACA...GTTACCCACAGCTTGAGAGTCAAGGTATGTTTTCCTTAAGTGACTTCCACATGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CCA 90 bp | CAGCCCTCCCCATTACAAAGCACTGTGCAGCCCAAACTGTCCAAGCTATTTTCATGGTGGCATTTCTTTTaGGCTGGACACAGAATCACA | + |
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Preference number: 2 (lower is better) Translates to: QPSPLQSTVQPKLSKLFSWWHFF*AGHRIT Trigger: TGTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCA...TGAAAATAGCTTGGACAGTTTGGGCTGCACAGTGCTTTGTAATGGGGAGGGCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CAA 90 bp | ACCTCACCACCCTCACAGGAAGTTGACCCTGAGATACAGCTAATTTaGCTACATCCTGGCTTTTTATCTGGAACCCTCCTCTTCCTTTCA | + |
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Preference number: 2 (lower is better) Translates to: TSPPSQEVDPEIQLI*LHPGFLSGTLLFLS Trigger: TGAAAGGAAGAGGAGGGTTCCAGATAAAAAGCCAGGATGTAGCAAAATTAGCTGTATCTCAGGGTCAACTTCCTGTGAGGGTGGTGAGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CCA 90 bp | CTTTCAACCTATTTACCTCACCACCCTCACAGGAAGTTGACCCTGAGATACAGCGCATTTCTTTTGGGCTaGACACAGAATCACAGAATG | + |
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Preference number: 2 (lower is better) Translates to: LSTYLPHHPHRKLTLRYSAFLLG*TQNHRM Trigger: CATTCTGTGATTCTGTGTCCAGCCCAAAAGAAATGC...GCTGTATCTCAGGGTCAACTTCCTGTGAGGGTGGTGAGGTAAATAGGTTGAAAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CCA 90 bp | AATAAAAGCAAGAAGTTTAAACAGGTAGCACCCGACCTTCATTCAGGAGCAAGGTGGTGGCATTTCTTTTaGGCTGGACACAGAATCACA | + |
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Preference number: 2 (lower is better) Translates to: NKSKKFKQVAPDLHSGARWWHFF*AGHRIT Trigger: TGTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCA...CCTTGCTCCTGAATGAAGGTCGGGTGCTACCTGTTTAAACTTCTTGCTTTTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGCGGATCAGTTTCCACAACCCTGACCCATTACCACAAAACAAGCTTCCTAACATTTGGCAATTTCTaGAGATATTTTGGTTGCCAC | + |
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Preference number: 2 (lower is better) Translates to: RSGSVSTTLTHYHKTSFLTFGNF*RYFGCH Trigger: GTGGCAACCAAAATATCTCCAGAAATTGCCAAATGT...TAGGAAGCTTGTTTTGTGGTAATGGGTCAGGGTTGTGGAAACTGATCCGCTCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CCA 72 bp | AGATCAAGGGTGTGCAGGGCTTCAGCGGAGCTCCTCTaGCCCACCAGTAGTCACTTGGTCAGTCCTGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: RSRVCRASAELL*PTSSHLVSPAA Trigger: GGCAGCAGGACTGACCAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCTGCACACCCTTGATCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR TCA 72 bp | AGCGGAGAGACATGGCGGGGCTGTGACCTTAAGGTCTaGAATTCCGAGCGGACTGGGCAGTGGTCACCTAGC | + |
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Preference number: 3 (lower is better) Translates to: SGETWRGCDLKV*NSERTGQWSPS Trigger: GCTAGGTGACCACTGCCCAGTCCGCTCGGAATTTCAGACCTTAAGGTCACAGCCCCGCCATGTCTCTCCGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR TCA 72 bp | ACCCCACACAGTGCCCAACCTTTCGCCACTGTGACCTaGCATTCATGGCCTTCCTGGGAGCATGCTGCTAGG | + |
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Preference number: 3 (lower is better) Translates to: TPHSAQPFATVT*HSWPSWEHAAR Trigger: CCTAGCAGCATGCTCCCAGGAAGGCCATGAATGTCAGGTCACAGTGGCGAAAGGTTGGGCACTGTGTGGGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR GCA 72 bp | ACCCACACCGTGTCCTCTCCAGTTAACCCCACACAGTaGCCAACCTTTCGCCACTGTGACCTGACATTCATG | + |
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Preference number: 3 (lower is better) Translates to: THTVSSPVNPTQ*PTFRHCDLTFM Trigger: CATGAATGTCAGGTCACAGTGGCGAAAGGTTGGGCACTGTGTGGGGTTAACTGGAGAGGACACGGTGTGGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CAA 90 bp | CAGGAAGAATTTAGCAAACTCGGGGTTCAGCTGTGGCTCCCACTCCTGCCTGCCGTGGTGGCATTTCTTTaGGGCTGGACACAGAATCAC | + |
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Preference number: 3 (lower is better) Translates to: QEEFSKLGVQLWLPLLPAVVAFL*GWTQNH Trigger: GTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCAC...GGCAGGCAGGAGTGGGAGCCACAGCTGAACCCCGAGTTTGCTAAATTCTTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| 3UTR-3UTR CAA 90 bp | CGACCTTCATTCAGGAGCAAGGAACCCATTCCAGGTTCCCAGAGAACCCCCAGCGTGGTGGCATTTCTTTaGGGCTGGACACAGAATCAC | + |
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Preference number: 3 (lower is better) Translates to: RPSFRSKEPIPGSQRTPSVVAFL*GWTQNH Trigger: GTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCAC...GCTGGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTCG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107201.9 |
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| 3UTR TCA 72 bp | GGAGAGTATCCACCAGAAGACTGTGCTCAAAGAAACTaGCACAAGACTGGAGCTCAGGGGTCACCCACACCG | + |
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Preference number: 3 (lower is better) Translates to: GEYPPEDCAQRN*HKTGAQGSPTP Trigger: CGGTGTGGGTGACCCCTGAGCTCCAGTCTTGTGTCAGTTTCTTTGAGCACAGTCTTCTGGTGGATACTCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CCA 72 bp | GGGGCCCTTGGGTCACTGGTTGAAGGGATCTGGTGGTaGCATTTCTTTTGGGCTGGACACAGAATCACAGAA | + |
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Preference number: 3 (lower is better) Translates to: GALGSLVEGIWW*HFFWAGHRITE Trigger: TTCTGTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAGTGACCCAAGGGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR CCA 72 bp | ACCAGAAGACTGTGCTCAAAGAAACTGACACAAGACTaGAGCTCAGGGGTCACCCACACCGTGTCCTCTCCA | + |
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Preference number: 3 (lower is better) Translates to: TRRLCSKKLTQD*SSGVTHTVSSP Trigger: TGGAGAGGACACGGTGTGGGTGACCCCTGAGCTCCAGTCTTGTGTCAGTTTCTTTGAGCACAGTCTTCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CAA 90 bp | TTTAAACAGGTAGCACCCGACCTTCATTCAGGAGCAAGGAACCCATTCCAGGTTCCCTTGGGTCACTGGTaGAAGGGATCTGGTGGTGGC | + |
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Preference number: 3 (lower is better) Translates to: FKQVAPDLHSGARNPFQVPLGHW*KGSGGG Trigger: GCCACCACCAGATCCCTTCAACCAGTGACCCAAGGG...AACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTCGGGTGCTACCTGTTTAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107201.9 |
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| 3UTR GCA 72 bp | AGTGGTGGCAGCAGACACACAGAGAAGGTAGCTCGATaGAGGAGAGTATCCACCAGAAGACTGTGCTCAAAG | + |
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Preference number: 3 (lower is better) Translates to: SGGSRHTEKVAR*RRVSTRRLCSK Trigger: CTTTGAGCACAGTCTTCTGGTGGATACTCTCCTGCATCGAGCTACCTTCTCTGTGTGTCTGCTGCCACCACT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CAA 90 bp | CTGCAAGCTCCTCCCTTAAAGGAGGCAGGCCTGAACCACAAGGAGGCAAACTCCAGCTATTTTCAAGTGTaGGAGTTGAAAAGCCACGCT | + |
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Preference number: 3 (lower is better) Translates to: LQAPPLKEAGLNHKEANSSYFQV*ELKSHA Trigger: AGCGTGGCTTTTCAACTCCAACACTTGAAAATAGCT...GGAGTTTGCCTCCTTGTGGTTCAGGCCTGCCTCCTTTAAGGGAGGAGCTTGCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR TCA 72 bp | CTGGAGTCGCCAGGAGCGGATCAGTTTCCACAACCCTaGCCCATTACCACAAAACAAGCTTCCTATTACAGA | + |
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Preference number: 3 (lower is better) Translates to: LESPGADQFPQP*PITTKQASYYR Trigger: TCTGTAATAGGAAGCTTGTTTTGTGGTAATGGGTCAGGGTTGTGGAAACTGATCCGCTCCTGGCGACTCCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CCA 72 bp | TGGCATTTCTTTTGGGCTGGACACAGAATCACAGAATaGGAACTCCAAGACTGCAGAACCAGTCCCATGGGA | + |
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Preference number: 3 (lower is better) Translates to: WHFFWAGHRITE*ELQDCRTSPMG Trigger: TCCCATGGGACTGGTTCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTGTCCAGCCCAAAAGAAATGCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| 3UTR CCA 72 bp | GACTCGCAAACTCATTCCAATCACCTTGTTAAGTGGTaGCAGCAGACACACAGAGAAGGTAGCTCGATGCAG | + |
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Preference number: 3 (lower is better) Translates to: DSQTHSNHLVKW*QQTHREGSSMQ Trigger: CTGCATCGAGCTACCTTCTCTGTGTGTCTGCTGCCACCACTTAACAAGGTGATTGGAATGAGTTTGCGAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR GCA 72 bp | TTAGCAAACTCGGGGTTCAGCTGTGGCTCCCACTCCTaGCTGCCTCGATTAGAGAATAAAAGCAAGAAGTTT | + |
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Preference number: 3 (lower is better) Translates to: LANSGFSCGSHS*LPRLENKSKKF Trigger: AAACTTCTTGCTTTTATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACAGCTGAACCCCGAGTTTGCTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| 3UTR GCA 72 bp | TCTGTGCAGAACAGCCCTCCCCATTACAAAGCACTGTaGAGCCCAAACTGTCCAAGCTATTTTCAAGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: SVQNSPPHYKAL*SPNCPSYFQVL Trigger: CAACACTTGAAAATAGCTTGGACAGTTTGGGCTGCACAGTGCTTTGTAATGGGGAGGGCTGTTCTGCACAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CCA 72 bp | TACGACTCGCAAACTCATTCCAATCACCTTGTTAAGTaGTGGCAGCAGACACACAGAGAAGGTAGCTCGATG | + |
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Preference number: 3 (lower is better) Translates to: YDSQTHSNHLVK*WQQTHREGSSM Trigger: CATCGAGCTACCTTCTCTGTGTGTCTGCTGCCACCACTTAACAAGGTGATTGGAATGAGTTTGCGAGTCGTA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CAA 90 bp | AATAAAAGCAAGAAGTTTAAACAGGTAGCACCCGACCTTCATTCAGGAGCAAGGCAGCCCCCACTCCTTTaGAGGCACTTGTTAGAGAGA | + |
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Preference number: 3 (lower is better) Translates to: NKSKKFKQVAPDLHSGARQPPLL*RHLLER Trigger: TCTCTCTAACAAGTGCCTCAAAAGGAGTGGGGGCTG...CCTTGCTCCTGAATGAAGGTCGGGTGCTACCTGTTTAAACTTCTTGCTTTTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| 3UTR TCA 72 bp | ATCAGCCTGCAAAGAAAGGGCCAGAATGACAACACCTaGGAAAACAAAAGGCCTACAGACTCCGTTTCTACA | + |
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Preference number: 3 (lower is better) Translates to: ISLQRKGQNDNT*ENKRPTDSVST Trigger: TGTAGAAACGGAGTCTGTAGGCCTTTTGTTTTCTCAGGTGTTGTCATTCTGGCCCTTTCTTTGCAGGCTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR-3UTR CAA 90 bp | AGGAGCGGATCAGTTTCCACAACCCTGACCCATTACCACAAAACAAGCTTCCTAGAGATACAGCTAATTTaGCTACATCCTGGCTTTTTA | + |
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Preference number: 3 (lower is better) Translates to: RSGSVSTTLTHYHKTSFLEIQLI*LHPGFL Trigger: TAAAAAGCCAGGATGTAGCAAAATTAGCTGTATCTC...TAGGAAGCTTGTTTTGTGGTAATGGGTCAGGGTTGTGGAAACTGATCCGCTCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| CDS-3UTR GCA 90 bp | AGGGCTTCAGCGGAGCTCCTCTGGCCCACCAGTAGTCACTTGGTCAGTCCTGCTCATCTGCTCCTGAACTaGACCTGTCATGGCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: RASAELLWPTSSHLVSPAHLLLN*TCHGKS Trigger: GGACTTGCCATGACAGGTGCAGTTCAGGAGCAGATG...AGCAGGACTGACCAAGTGACTACTGGTGGGCCAGAGGAGCTCCGCTGAAGCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS-3UTR CCA 90 bp | CGACCTTCATTCAGGAGCAAGGAACCCATTCCAGGTTCCCAGAGAACCCCCAGCCTCTTTTTCTTCGGCTaGGGCTTCTCGACCACGCAG | + |
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Preference number: 4 (lower is better) Translates to: RPSFRSKEPIPGSQRTPSLFFFG*GFSTTQ Trigger: CTGCGTGGTCGAGAAGCCCCAGCCGAAGAAAAAGAG...GCTGGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGGTCG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107201.9 |
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| CDS-3UTR TCA 90 bp | GGGCCCTTGGGTCACTGGTTGAAGGGATCTGGTGGTGGCATTTCTTTTGGGCTGGATCTCATCTGCTCCTaGACTGCACCTGTCATGGCA | + |
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Preference number: 4 (lower is better) Translates to: GPLGHWLKGSGGGISFGLDLICS*TAPVMA Trigger: TGCCATGACAGGTGCAGTTCAGGAGCAGATGAGATC...CAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAGTGACCCAAGGGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS-3UTR GCA 90 bp | GCAAACTCGGGGTTCAGCTGTGGCTCCCACTCCTGCCTGCCTCGATTAGAGAATCATCTGCTCCTGAACTaGACCTGTCATGGCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: ANSGFSCGSHSCLPRLENHLLLN*TCHGKS Trigger: GGACTTGCCATGACAGGTGCAGTTCAGGAGCAGATG...ATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACAGCTGAACCCCGAGTTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| CDS-3UTR GCA 90 bp | CCTTCATTCAGGAGCAAGGAACCCATTCCAGGTTCCCAGAGAACCCCCAGCTCACATCTGCTCCTGAACTaGACCTGTCATGGCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: PSFRSKEPIPGSQRTPSSHLLLN*TCHGKS Trigger: GGACTTGCCATGACAGGTGCAGTTCAGGAGCAGATG...TGAGCTGGGGGTTCTCTGGGAACCTGGAATGGGTTCCTTGCTCCTGAATGAAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107201.9 |
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| CDS-3UTR CCA 90 bp | GCCCTTGGGTCACTGGTTGAAGGGATCTGGTGGTGGCATTTCTTTTGGGCTGGACACGGTCTGTCACGGTaGTTTCCCTTGGATCTCATC | + |
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Preference number: 4 (lower is better) Translates to: ALGSLVEGIWWWHFFWAGHGLSR*FPLDLI Trigger: GATGAGATCCAAGGGAAACCACCGTGACAGACCGTG...TCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAGTGACCCAAGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS-3UTR TCA 90 bp | GGGTTCAGCTGTGGCTCCCACTCCTGCCTGCCTCGATTAGAGAATAAAAGCAAGGATCTCATCTGCTCCTaGACTGCACCTGTCATGGCA | + |
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Preference number: 4 (lower is better) Translates to: GFSCGSHSCLPRLENKSKDLICS*TAPVMA Trigger: TGCCATGACAGGTGCAGTTCAGGAGCAGATGAGATC...CTTGCTTTTATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACAGCTGAACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| CDS-3UTR CCA 90 bp | TTGGGCTGGACACAGAATCACAGAATGGGAACTCCAAGACTGCAGAACCAGTCCCTCTTTTTCTTCGGCTaGGGCTTCTCGACCACGCAG | + |
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Preference number: 4 (lower is better) Translates to: LGWTQNHRMGTPRLQNQSLFFFG*GFSTTQ Trigger: CTGCGTGGTCGAGAAGCCCCAGCCGAAGAAAAAGAG...GGACTGGTTCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTGTCCAGCCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107201.9 |
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| CDS-3UTR CCA 90 bp | GGGTTCAGCTGTGGCTCCCACTCCTGCCTGCCTCGATTAGAGAATAAAAGCAAGCACGGTCTGTCACGGTaGTTTCCCTTGGATCTCATC | + |
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Preference number: 4 (lower is better) Translates to: GFSCGSHSCLPRLENKSKHGLSR*FPLDLI Trigger: GATGAGATCCAAGGGAAACCACCGTGACAGACCGTG...CTTGCTTTTATTCTCTAATCGAGGCAGGCAGGAGTGGGAGCCACAGCTGAACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 |
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| 3UTR CAA 72 bp | ACTGGGCAGTGGTCACCTAGCCCCATCACCTCTGTGTaGTTCATTCCAGAAGGAAAGAGTACAGGGAAGCAG | + |
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Preference number: 4 (lower is better) Translates to: TGQWSPSPITSV*FIPEGKSTGKQ Trigger: CTGCTTCCCTGTACTCTTTCCTTCTGGAATGAACAACACAGAGGTGATGGGGCTAGGTGACCACTGCCCAGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| CDS-3UTR GCA 90 bp | TTGGGTCACTGGTTGAAGGGATCTGGTGGTGGCATTTCTTTTGGGCTGGACACACATCTGCTCCTGAACTaGACCTGTCATGGCAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: LGHWLKGSGGGISFGLDTHLLLN*TCHGKS Trigger: GGACTTGCCATGACAGGTGCAGTTCAGGAGCAGATG...TGTGTCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAGTGACCCAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS-3UTR TCA 90 bp | GAAGGGATCTGGTGGTGGCATTTCTTTTGGGCTGGACACAGAATCACAGAATGGGATCTCATCTGCTCCTaGACTGCACCTGTCATGGCA | + |
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Preference number: 4 (lower is better) Translates to: EGIWWWHFFWAGHRITEWDLICS*TAPVMA Trigger: TGCCATGACAGGTGCAGTTCAGGAGCAGATGAGATC...CCATTCTGTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS-3UTR CCA 90 bp | CTGGTTGAAGGGATCTGGTGGTGGCATTTCTTTTGGGCTGGACACAGAATCACACACGGTCTGTCACGGTaGTTTCCCTTGGATCTCATC | + |
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Preference number: 4 (lower is better) Translates to: LVEGIWWWHFFWAGHRITHGLSR*FPLDLI Trigger: GATGAGATCCAAGGGAAACCACCGTGACAGACCGTG...TGTGATTCTGTGTCCAGCCCAAAAGAAATGCCACCACCAGATCCCTTCAACCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS-3UTR CCA 90 bp | TTTCTTTTGGGCTGGACACAGAATCACAGAATGGGAACTCCAAGACTGCAGAACGAACTGCACCTGTCATaGCAAGTCCATCTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: FLLGWTQNHRMGTPRLQNELHLS*QVHLQP Trigger: GGGCTGGAGATGGACTTGCCATGACAGGTGCAGTTC...GTTCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTGTCCAGCCCAAAAGAAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS-3UTR CCA 90 bp | ATTTTGCTACATCCTGGCTTTTTATCTGGAACCCTCCTCTTCCTTTCACCTGGGGTGGACAAAGTTCATTaGCTCCCCAATCATAGTGCG | + |
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Preference number: 4 (lower is better) Translates to: ILLHPGFLSGTLLFLSPGVDKVH*LPNHSA Trigger: CGCACTATGATTGGGGAGCCAATGAACTTTGTCCAC...CCCAGGTGAAAGGAAGAGGAGGGTTCCAGATAAAAAGCCAGGATGTAGCAAAAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| CDS-3UTR CCA 90 bp | TTTCTTTTGGGCTGGACACAGAATCACAGAATGGGAACTCCAAGACTGCAGAACGTGGACAAAGTTCATTaGCTCCCCAATCATAGTGCG | + |
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Preference number: 4 (lower is better) Translates to: FLLGWTQNHRMGTPRLQNVDKVH*LPNHSA Trigger: CGCACTATGATTGGGGAGCCAATGAACTTTGTCCAC...GTTCTGCAGTCTTGGAGTTCCCATTCTGTGATTCTGTGTCCAGCCCAAAAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107201.9 |
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| 3UTR CAA 72 bp | CCCTCACAGGAAGTTGACCCTGAGATACAGCTAATTTaGCTACATCCTGGCTTTTTATCTGGAACCCTCCTC | + |
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Preference number: 4 (lower is better) Translates to: PSQEVDPEIQLI*LHPGFLSGTLL Trigger: GAGGAGGGTTCCAGATAAAAAGCCAGGATGTAGCAAAATTAGCTGTATCTCAGGGTCAACTTCCTGTGAGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| 3UTR CAA 72 bp | TCTCAAGCTGTGGGTAACTTCATCCCTGGGAGACATTaGGCAATTTCTGGAGATATTTTGGTTGCCACACTG | + |
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Preference number: 4 (lower is better) Translates to: SQAVGNFIPGRH*AISGDILVATL Trigger: CAGTGTGGCAACCAAAATATCTCCAGAAATTGCCAAATGTCTCCCAGGGATGAAGTTACCCACAGCTTGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000053872.12 |
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| CDS TCA 72 bp | CTGTCACGGTGGTTTCCCTTGGATCTCATCTGCTCCTaGACTGCACCTGTCATGGCAAGTCCATCTCCAGCC | + |
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Preference number: 6 (lower is better) Translates to: LSRWFPLDLICS*TAPVMASPSPA Trigger: GGCTGGAGATGGACTTGCCATGACAGGTGCAGTTCAGGAGCAGATGAGATCCAAGGGAAACCACCGTGACAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000053872.12 ENSMUST00000107199.2 ENSMUST00000107200.8 ENSMUST00000107201.9 |
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| CDS CCA 72 bp | CCCAGAGCCGATGTGAGTCAGGTGGACAAAGTTCATTaGCTCCCCAATCATAGTGCGGTCAATCCGTCTTCT | + |
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Preference number: 6 (lower is better) Translates to: PRADVSQVDKVH*LPNHSAVNPSS Trigger: AGAAGACGGATTGACCGCACTATGATTGGGGAGCCAATGAACTTTGTCCACCTGACTCACATCGGCTCTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000053872.12 ENSMUST00000107201.9 |
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