RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDC42EP5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063838

Ensembl transcript IDs: ENSMUST00000076831.7, ENSMUST00000143825.2

Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR CCA 90 bp CCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGGAGGCGGACCGCCCCCGTaGCGACTCAGGAATGAGGTG +
Preference number: 4 (lower is better)
Translates to: PQPFMCTKVECWEGGVEGGGPPP*RLRNEV
Trigger: CACCTCATTCCTGAGTCGCCACGGGGGCGGTCCGCC...TCCCTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR TCA 90 bp GGCACAAACCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGGTGGCGACTCAGGAATaGGGTGTCCCCGAAGGCGTC +
Preference number: 4 (lower is better)
Translates to: GTNLSHLCVQKWSAGREGVATQE*GVPEGV
Trigger: GACGCCTTCGGGGACACCTCATTCCTGAGTCGCCAC...CCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGGTTTGTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR TCA 90 bp CCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGGAATTATGCAGCGGGTCCGCAGGTaGAGGCACAGCCACAGGGGG +
Preference number: 4 (lower is better)
Translates to: PFMCTKVECWEGGVEGIMQRVRR*RHSHRG
Trigger: CCCCCTGTGGCTGTGCCTTCACCTGCGGACCCGCTG...CATAATTCCCTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR TCA 90 bp GCACAAACCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGCGCTCCGCGTCCATaGCGCCTAACACCGCGTCCA +
Preference number: 4 (lower is better)
Translates to: AQTSAIYVYKSGVLGGRGCAPRP*RLTPRP
Trigger: TGGACGCGGTGTTAGGCGTCATGGACGCGGAGCGCA...ACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGGTTTGTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR GCA 90 bp GGCACAAACCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGAGGGGGCTGTGGGGCTaGAGGTGGAGCGACAGAATG +
Preference number: 4 (lower is better)
Translates to: GTNLSHLCVQKWSAGREGRGLWG*RWSDRM
Trigger: CATTCTGTCGCTCCACCTGCAGCCCCACAGCCCCCT...CCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGGTTTGTGCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR CCA 90 bp CCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGGAATTATGTGGGGCCACAACCGGTaGGGCTCCAGGCTCGGGAGG +
Preference number: 4 (lower is better)
Translates to: PFMCTKVECWEGGVEGIMWGHNR*GSRLGR
Trigger: CCTCCCGAGCCTGGAGCCCCACCGGTTGTGGCCCCA...CATAATTCCCTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR CCA 90 bp CTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGGAAGGGCCCAGGTCCAGGTaGAAAGACAGCAGCGGGTCC +
Preference number: 4 (lower is better)
Translates to: LSHLCVQKWSAGREGLREGPRSR*KDSSGS
Trigger: GGACCCGCTGCTGTCTTTCCACCTGGACCTGGGCCC...TTCCCTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR GCA 90 bp CCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGGAATTATGCGGGTCTTGGGGTGCTaGACTCTAGGGTGGGCATCC +
Preference number: 4 (lower is better)
Translates to: PFMCTKVECWEGGVEGIMRVLGC*TLGWAS
Trigger: GGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCG...CATAATTCCCTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR CCA 90 bp CCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGGAATTATGCTGTGGGGCTGCAGGTaGAGCGACAGAATGTGGGGC +
Preference number: 4 (lower is better)
Translates to: PFMCTKVECWEGGVEGIMLWGCR*SDRMWG
Trigger: GCCCCACATTCTGTCGCTCCACCTGCAGCCCCACAG...CATAATTCCCTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR GCA 90 bp AAACCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGCCGCTTCTTGGGTTGTaGAGGGCCCAGCTGCTTCAT +
Preference number: 4 (lower is better)
Translates to: KPQPFMCTKVECWEGGVEPLLGL*RAQLLH
Trigger: ATGAAGCAGCTGGGCCCTGCACAACCCAAGAAGCGG...CTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGGTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR CCA 90 bp AGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGGAATTAGATCCAGCCGCTTCTTaGGTTGTGCAGGGCCCAGCT +
Preference number: 4 (lower is better)
Translates to: SHLCVQKWSAGREGLRELDPAAS*VVQGPA
Trigger: AGCTGGGCCCTGCACAACCCAAGAAGCGGCTGGATC...TAATTCCCTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS CCA 90 bp ATGACGCCTAACACCGCGTCCAGCATAGAGGGGCCCAGGTCCAGGTaGAAAGACAGCAGCGGGTCCGCAGGTGAAGGCACAGCCACAGGG +
Preference number: 5 (lower is better)
Translates to: MTPNTASSIEGPRSR*KDSSGSAGEGTATG
Trigger: CCCTGTGGCTGTGCCTTCACCTGCGGACCCGCTGCTGTCTTTCCACCTGGACCTGGGCCCCTCTATGCTGGACGCGGTGTTAGGCGTCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS CCA 90 bp TCAGCATTTGAGCAGCAGCGGGTCTTGGGGTGCTGCACTCTAGGGTaGGCATCCCCATCGGGCTTGGTGGCTGTTGTCTCGCTGCGCTCC +
Preference number: 5 (lower is better)
Translates to: SAFEQQRVLGCCTLG*ASPSGLVAVVSLRS
Trigger: GGAGCGCAGCGAGACAACAGCCACCAAGCCCGATGGGGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCGCTGCTGCTCAAATGCTGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS TCA 90 bp ACCGCGTCCCACGTGCAATGTGTGCCTGAAGTCTCCGAGGGGTGCTaGGATCGAGAGTGCTCCGCGATCCAGCCGCTTCTTGGGTTGTGC +
Preference number: 5 (lower is better)
Translates to: TASHVQCVPEVSEGC*DRECSAIQPLLGLC
Trigger: GCACAACCCAAGAAGCGGCTGGATCGCGGAGCACTCTCGATCTCAGCACCCCTCGGAGACTTCAGGCACACATTGCACGTGGGACGCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076831.7
ENSMUST00000143825.2
CDS GCA 90 bp TCCAGCTGGAGGTCAGCATTTGAGCAGCAGCGGGTCTTGGGGTGCTaGACTCTAGGGTGGGCATCCCCATCGGGCTTGGTGGCTGTTGTC +
Preference number: 5 (lower is better)
Translates to: SSWRSAFEQQRVLGC*TLGWASPSGLVAVV
Trigger: GACAACAGCCACCAAGCCCGATGGGGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCGCTGCTGCTCAAATGCTGACCTCCAGCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS GCA 90 bp TCGTCCAGCTGGAGGTCAGCATTTGAGCAGCAGCGGGTCTTGGGGTaGTGCACTCTAGGGTGGGCATCCCCATCGGGCTTGGTGGCTGTT +
Preference number: 5 (lower is better)
Translates to: SSSWRSAFEQQRVLG*CTLGWASPSGLVAV
Trigger: AACAGCCACCAAGCCCGATGGGGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCGCTGCTGCTCAAATGCTGACCTCCAGCTGGACGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR CAA 90 bp GGCACAAACCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGCAGCCGCTTCTTGGGTaGTGCAGGGCCCAGCTGCTT +
Preference number: 5 (lower is better)
Translates to: GTNLSHLCVQKWSAGREGQPLLG*CRAQLL
Trigger: AAGCAGCTGGGCCCTGCACAACCCAAGAAGCGGCTG...CCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGGTTTGTGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR CAA 90 bp AAACCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTTGAGGCATCCCCATCGGGCTaGGTGGCTGTTGTCTCGCTG +
Preference number: 5 (lower is better)
Translates to: KPQPFMCTKVECWEGGVEASPSG*VAVVSL
Trigger: CAGCGAGACAACAGCCACCAAGCCCGATGGGGATGC...CTCAACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGGTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS-3UTR CAA 90 bp GCACAAACCTCAGCCATTTATGTGTACAAAAGTGGAGTGCTGGGAGGGAGGGGTGCTGGAGGTCAGCATTaGAGCAGCAGCGGGTCTTGG +
Preference number: 5 (lower is better)
Translates to: AQTSAIYVYKSGVLGGRGAGGQH*SSSGSW
Trigger: CCAAGACCCGCTGCTGCTCAAATGCTGACCTCCAGC...ACCCCTCCCTCCCAGCACTCCACTTTTGTACACATAAATGGCTGAGGTTTGTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS TCA 72 bp CTCGGGAGGCGGACCGCCCCCGTGGCGACTCAGGAATaGGGTGTCCCCGAAGGCGTCGCCACCGCGTCCCAC +
Preference number: 6 (lower is better)
Translates to: LGRRTAPVATQE*GVPEGVATASH
Trigger: GTGGGACGCGGTGGCGACGCCTTCGGGGACACCTCATTCCTGAGTCGCCACGGGGGCGGTCCGCCTCCCGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076831.7
ENSMUST00000143825.2
CDS CCA 72 bp TGCAGGTGGAGCGACAGAATGTGGGGCCACAACCGGTaGGGCTCCAGGCTCGGGAGGCGGACCGCCCCCGTG +
Preference number: 6 (lower is better)
Translates to: CRWSDRMWGHNR*GSRLGRRTAPV
Trigger: CACGGGGGCGGTCCGCCTCCCGAGCCTGGAGCCCCACCGGTTGTGGCCCCACATTCTGTCGCTCCACCTGCA
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076831.7
ENSMUST00000143825.2
CDS TCA 72 bp CAGGTCCAGGTGGAAAGACAGCAGCGGGTCCGCAGGTaGAGGCACAGCCACAGGGGGCTGTGGGGCTGCAGG +
Preference number: 6 (lower is better)
Translates to: QVQVERQQRVRR*RHSHRGLWGCR
Trigger: CCTGCAGCCCCACAGCCCCCTGTGGCTGTGCCTTCACCTGCGGACCCGCTGCTGTCTTTCCACCTGGACCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS CAA 72 bp GGGTGCTGCACTCTAGGGTGGGCATCCCCATCGGGCTaGGTGGCTGTTGTCTCGCTGCGCTCCGCGTCCATG +
Preference number: 6 (lower is better)
Translates to: GCCTLGWASPSG*VAVVSLRSASM
Trigger: CATGGACGCGGAGCGCAGCGAGACAACAGCCACCAAGCCCGATGGGGATGCCCACCCTAGAGTGCAGCACCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS CCA 72 bp GAGCAGCAGCGGGTCTTGGGGTGCTGCACTCTAGGGTaGGCATCCCCATCGGGCTTGGTGGCTGTTGTCTCG +
Preference number: 6 (lower is better)
Translates to: EQQRVLGCCTLG*ASPSGLVAVVS
Trigger: CGAGACAACAGCCACCAAGCCCGATGGGGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCGCTGCTGCTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS GCA 72 bp CCGAAGGCGTCGCCACCGCGTCCCACGTGCAATGTGTaGCTGAAGTCTCCGAGGGGTGCTGAGATCGAGAGT +
Preference number: 6 (lower is better)
Translates to: PKASPPRPTCNV*LKSPRGAEIES
Trigger: ACTCTCGATCTCAGCACCCCTCGGAGACTTCAGGCACACATTGCACGTGGGACGCGGTGGCGACGCCTTCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076831.7
ENSMUST00000143825.2
CDS GCA 72 bp AGGTCAGCATTTGAGCAGCAGCGGGTCTTGGGGTGCTaGACTCTAGGGTGGGCATCCCCATCGGGCTTGGTG +
Preference number: 6 (lower is better)
Translates to: RSAFEQQRVLGC*TLGWASPSGLV
Trigger: CACCAAGCCCGATGGGGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCGCTGCTGCTCAAATGCTGACCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS GCA 72 bp TGGAGGTCAGCATTTGAGCAGCAGCGGGTCTTGGGGTaGTGCACTCTAGGGTGGGCATCCCCATCGGGCTTG +
Preference number: 6 (lower is better)
Translates to: WRSAFEQQRVLG*CTLGWASPSGL
Trigger: CAAGCCCGATGGGGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCGCTGCTGCTCAAATGCTGACCTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS CAA 72 bp GCTGAGATCGAGAGTGCTCCGCGATCCAGCCGCTTCTaGGGTTGTGCAGGGCCCAGCTGCTTCATTACCGGC +
Preference number: 6 (lower is better)
Translates to: AEIESAPRSSRF*GCAGPSCFITG
Trigger: GCCGGTAATGAAGCAGCTGGGCCCTGCACAACCCAAGAAGCGGCTGGATCGCGGAGCACTCTCGATCTCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076831.7
ENSMUST00000143825.2
CDS CAA 72 bp TCCAGCTGGAGGTCAGCATTTGAGCAGCAGCGGGTCTaGGGGTGCTGCACTCTAGGGTGGGCATCCCCATCG +
Preference number: 6 (lower is better)
Translates to: SSWRSAFEQQRV*GCCTLGWASPS
Trigger: CGATGGGGATGCCCACCCTAGAGTGCAGCACCCCAAGACCCGCTGCTGCTCAAATGCTGACCTCCAGCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000076831.7
CDS CCA 72 bp CTGAGATCGAGAGTGCTCCGCGATCCAGCCGCTTCTTaGGTTGTGCAGGGCCCAGCTGCTTCATTACCGGCA +
Preference number: 6 (lower is better)
Translates to: LRSRVLRDPAAS*VVQGPAASLPA
Trigger: TGCCGGTAATGAAGCAGCTGGGCCCTGCACAACCCAAGAAGCGGCTGGATCGCGGAGCACTCTCGATCTCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076831.7
ENSMUST00000143825.2