Pregenerated sensors for CDC42EP3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036533Ensembl transcript IDs: ENSMUST00000068958.9, ENSMUST00000233363.2
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACCTCACCTCCAGTCTCCACAGAAGCATCACCCTGTGCCTCCTACTaGGAGGAGGTAACACCCGAGCAACAGGGTCAGGCTGATAACGCA | + |
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Preference number: 1 (lower is better) Translates to: TSPPVSTEASPCASY*EEVTPEQQGQADNA Trigger: TGCGTTATCAGCCTGACCCTGTTGCTCGGGTGTTACCTCCTCCCAGTAGGAGGCACAGGGTGATGCTTCTGTGGAGACTGGAGGTGAGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR GCA 90 bp | TTAAATACCTACCTCACCTCCAGTCTCCACAGAAGCATCACCCTGTaGCTCCTACTGGGAGGAGGTAACACCCGAGCAACAGGGTCAGGC | + |
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Preference number: 1 (lower is better) Translates to: LNTYLTSSLHRSITL*LLLGGGNTRATGSG Trigger: GCCTGACCCTGTTGCTCGGGTGTTACCTCCTCCCAGTAGGAGGCACAGGGTGATGCTTCTGTGGAGACTGGAGGTGAGGTAGGTATTTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR TCA 90 bp | GGTTGGGCTGGTTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAGTTGAAAATGAGCTCTaGCTCACTTCCTCCTTTTTC | + |
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Preference number: 2 (lower is better) Translates to: GWAGFVFKYTRVACKEARVENEL*LTSSFF Trigger: GAAAAAGGAGGAAGTGAGTCAGAGCTCATTTTCAAC...TCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGCCCAACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR TCA 90 bp | GGTTGGGCTGGTTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAAAAACTGAGCATGTATaGGCATCAGCAATGCCTGTT | + |
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Preference number: 2 (lower is better) Translates to: GWAGFVFKYTRVACKEARKTEHV*ASAMPV Trigger: AACAGGCATTGCTGATGCTCATACATGCTCAGTTTT...TCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGCCCAACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR TCA 90 bp | CATGAGCTGTCCTTAAATACCTACCTCACCTCCAGTCTCCACAGAAGCATCACCGAGACTTCGCTGTGGTaGACCCAAAAGATACAATAT | + |
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Preference number: 2 (lower is better) Translates to: HELSLNTYLTSSLHRSITETSLW*TQKIQY Trigger: ATATTGTATCTTTTGGGTTCACCACAGCGAAGTCTC...GGTGATGCTTCTGTGGAGACTGGAGGTGAGGTAGGTATTTAAGGACAGCTCATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR TCA 90 bp | TTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAATGGAAACACGTCTCATAACATGCAATaGATTGCCTTGGAGAGACCC | + |
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Preference number: 2 (lower is better) Translates to: FCFQIHTRSLQGSPNGNTSHNMQ*IALERP Trigger: GGGTCTCTCCAAGGCAATTCATTGCATGTTATGAGA...CGTGTTTCCATTCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR CCA 90 bp | CATGAGCTGTCCTTAAATACCTACCTCACCTCCAGTCTCCACAGAAGCATCACCGTTTTCTGCTTATTTTaGTACCTCTTACTCCCAAGA | + |
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Preference number: 2 (lower is better) Translates to: HELSLNTYLTSSLHRSITVFCLF*YLLLPR Trigger: TCTTGGGAGTAAGAGGTACCAAAATAAGCAGAAAAC...GGTGATGCTTCTGTGGAGACTGGAGGTGAGGTAGGTATTTAAGGACAGCTCATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR GCA 90 bp | GCTGGTTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAATGGAATATGAGCATCAGCAATaGCTGTTGAAAATGAGCTCT | + |
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Preference number: 2 (lower is better) Translates to: AGFVFKYTRVACKEARMEYEHQQ*LLKMSS Trigger: AGAGCTCATTTTCAACAGGCATTGCTGATGCTCATA...TTCCATTCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR CCA 72 bp | CCAGTCTCCACAGAAGCATCACCCTGTGCCTCCTACTaGGAGGAGGTAACACCCGAGCAACAGGGTCAGGCT | + |
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Preference number: 3 (lower is better) Translates to: PVSTEASPCASY*EEVTPEQQGQA Trigger: AGCCTGACCCTGTTGCTCGGGTGTTACCTCCTCCCAGTAGGAGGCACAGGGTGATGCTTCTGTGGAGACTGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR GCA 72 bp | TACCTCACCTCCAGTCTCCACAGAAGCATCACCCTGTaGCTCCTACTGGGAGGAGGTAACACCCGAGCAACA | + |
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Preference number: 3 (lower is better) Translates to: YLTSSLHRSITL*LLLGGGNTRAT Trigger: TGTTGCTCGGGTGTTACCTCCTCCCAGTAGGAGGCACAGGGTGATGCTTCTGTGGAGACTGGAGGTGAGGTA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR CAA 90 bp | TCCACAGAAGCATCACCCTGTGCCTCCTACTGGGAGGAGGTAACACCCGAGCAACCAAATCCTGTAAGGTaGCTCGAATATGCAAAGAGT | + |
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Preference number: 3 (lower is better) Translates to: STEASPCASYWEEVTPEQPNPVR*LEYAKS Trigger: ACTCTTTGCATATTCGAGCAACCTTACAGGATTTGG...TTGCTCGGGTGTTACCTCCTCCCAGTAGGAGGCACAGGGTGATGCTTCTGTGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR CAA 90 bp | GCTGGTTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAATGGAAATAACATGCAATGAATaGCCTTGGAGAGACCCATGG | + |
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Preference number: 3 (lower is better) Translates to: AGFVFKYTRVACKEARMEITCNE*PWRDPW Trigger: CCATGGGTCTCTCCAAGGCAATTCATTGCATGTTAT...TTCCATTCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR CAA 90 bp | GCCCTCTTAGACAGCCTGGATTTCTGCATGTCTACAAACAAAACTGAGCATGTACATCAGCAATGCCTGTaGAAAATGAGCTCTGACTCA | + |
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Preference number: 3 (lower is better) Translates to: ALLDSLDFCMSTNKTEHVHQQCL*KMSSDS Trigger: TGAGTCAGAGCTCATTTTCAACAGGCATTGCTGATG...TACATGCTCAGTTTTGTTTGTAGACATGCAGAAATCCAGGCTGTCTAAGAGGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR-3UTR CAA 90 bp | TGCATCACATGGCTGCAAATAAAAACAGTCAGAGCAGCTCTTTCCATCAGCTGTTGTTTTCTGCTTATTTaGGTACCTCTTACTCCCAAG | + |
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Preference number: 3 (lower is better) Translates to: CITWLQIKTVRAALSISCCFLLI*VPLTPK Trigger: CTTGGGAGTAAGAGGTACCAAAATAAGCAGAAAACA...ACAGCTGATGGAAAGAGCTGCTCTGACTGTTTTTATTTGCAGCCATGTGATGCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR CCA 90 bp | CATGAGCTGTCCTTAAATACCTACCTCACCTCCAGTCTCCACAGAAGCATCACCGAGACCCGGAACCACTaGAGCCCCACGAGGTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: HELSLNTYLTSSLHRSITETRNH*SPTRCL Trigger: GAGACACCTCGTGGGGCTCCAGTGGTTCCGGGTCTC...GGTGATGCTTCTGTGGAGACTGGAGGTGAGGTAGGTATTTAAGGACAGCTCATG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR CCA 90 bp | TGCATCACATGGCTGCAAATAAAAACAGTCAGAGCAGCTCTTTCCATCAGCTGTGACAGGCTGGAGGAGTaGCTGTCGCGGCCCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CITWLQIKTVRAALSISCDRLEE*LSRPWL Trigger: CAGCCAGGGCCGCGACAGCCACTCCTCCAGCCTGTC...ACAGCTGATGGAAAGAGCTGCTCTGACTGTTTTTATTTGCAGCCATGTGATGCA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR GCA 90 bp | GGTTGGGCTGGTTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGACGGAAGAAGTCGTTATaGCCCGGGAACTGGCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: GWAGFVFKYTRVACKEARRKKSL*PGNWPE Trigger: CTCTGGCCAGTTCCCGGGGCATAACGACTTCTTCCG...TCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGCCCAACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR GCA 90 bp | GCCCTCTTAGACAGCCTGGATTTCTGCATGTCTACAAACAAAACTGAGCATGTAGGCCCAAGATCCAACTaGAGGGAGAGCAGGGAGCCG | + |
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Preference number: 4 (lower is better) Translates to: ALLDSLDFCMSTNKTEHVGPRSN*RESREP Trigger: CGGCTCCCTGCTCTCCCTGCAGTTGGATCTTGGGCC...TACATGCTCAGTTTTGTTTGTAGACATGCAGAAATCCAGGCTGTCTAAGAGGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR CCA 90 bp | CATGAGCTGTCCTTAAATACCTACCTCACCTCCAGTCTCCACAGAAGCATCACCGGGATCCCCCAATGGTaGGGAGGGAGATGGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: HELSLNTYLTSSLHRSITGIPQW*GGRWHF Trigger: AAAATGCCATCTCCCTCCCCACCATTGGGGGATCCC...GGTGATGCTTCTGTGGAGACTGGAGGTGAGGTAGGTATTTAAGGACAGCTCATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR CCA 90 bp | TGCATCACATGGCTGCAAATAAAAACAGTCAGAGCAGCTCTTTCCATCAGCTGTGGCAGCATCAGAGCCTaGGATCCCCCAATGGTGGGG | + |
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Preference number: 4 (lower is better) Translates to: CITWLQIKTVRAALSISCGSIRA*DPPMVG Trigger: CCCCACCATTGGGGGATCCCAGGCTCTGATGCTGCC...ACAGCTGATGGAAAGAGCTGCTCTGACTGTTTTTATTTGCAGCCATGTGATGCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR TCA 90 bp | GGTTGGGCTGGTTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAGACTTCATCCAAAAGTaGAGGCCCAAGATCCAACTG | + |
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Preference number: 4 (lower is better) Translates to: GWAGFVFKYTRVACKEARDFIQK*RPKIQL Trigger: CAGTTGGATCTTGGGCCTTCACTTTTGGATGAAGTC...TCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGCCCAACC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR GCA 90 bp | GCCCTCTTAGACAGCCTGGATTTCTGCATGTCTACAAACAAAACTGAGCATGTAGAACTGGCCAGAGTGTaGCTTCTCTTGGTTTCCCGG | + |
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Preference number: 4 (lower is better) Translates to: ALLDSLDFCMSTNKTEHVELARV*LLLVSR Trigger: CCGGGAAACCAAGAGAAGGCACACTCTGGCCAGTTC...TACATGCTCAGTTTTGTTTGTAGACATGCAGAAATCCAGGCTGTCTAAGAGGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR CCA 90 bp | TTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAATGGAAACACGGAGTGTGCCTTCTCTTaGTTTCCCGGCAAGAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: FCFQIHTRSLQGSPNGNTECAFS*FPGKSS Trigger: TGAGCTCTTGCCGGGAAACCAAGAGAAGGCACACTC...CGTGTTTCCATTCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR TCA 90 bp | GCTGGTTTTGTTTTCAAATACACACGCGTAGCTTGCAAGGAAGCCCGAATGGAAAGACTACTTTGCTCCTaGACTTTCTCTTCCATGACA | + |
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Preference number: 4 (lower is better) Translates to: AGFVFKYTRVACKEARMERLLCS*TFSSMT Trigger: TGTCATGGAAGAGAAAGTTCAGGAGCAAAGTAGTCT...TTCCATTCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| 3UTR CAA 72 bp | TTGGGCTGGTTTTGTTTTCAAATACACACGCGTAGCTaGCAAGGAAGCCCGAATGGAAACACGACAAATAAC | + |
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Preference number: 4 (lower is better) Translates to: LGWFCFQIHTRS*QGSPNGNTTNN Trigger: GTTATTTGTCGTGTTTCCATTCGGGCTTCCTTGCAAGCTACGCGTGTGTATTTGAAAACAAAACCAGCCCAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR CAA 90 bp | TCCACAGAAGCATCACCCTGTGCCTCCTACTGGGAGGAGGTAACACCCGAGCAAAGGGAGATGGCATTTTaGAGCACCGGGGAGGGTGTT | + |
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Preference number: 5 (lower is better) Translates to: STEASPCASYWEEVTPEQREMAF*STGEGV Trigger: AACACCCTCCCCGGTGCTCAAAAATGCCATCTCCCT...TTGCTCGGGTGTTACCTCCTCCCAGTAGGAGGCACAGGGTGATGCTTCTGTGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS GCA 90 bp | TCTTCTGATTTAGTCTTTGACTTCACAAGCTCACAGGAGGCAGGATaGTCAAACATGTCGTCCGCGGGCCAGTCGGAGGACTGTTCCGAC | + |
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Preference number: 5 (lower is better) Translates to: SSDLVFDFTSSQEAG*SNMSSAGQSEDCSD Trigger: GTCGGAACAGTCCTCCGACTGGCCCGCGGACGACATGTTTGAGCATCCTGCCTCCTGTGAGCTTGTGAAGTCAAAGACTAAATCAGAAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS-3UTR CAA 90 bp | TCTGCATGTCTACAAACAAAACTGAGCATGTATGAGCATCAGCAATGCCTGTTGAGAGTGTGCCTTCTCTaGGTTTCCCGGCAAGAGCTC | + |
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Preference number: 5 (lower is better) Translates to: SACLQTKLSMYEHQQCLLRVCLL*VSRQEL Trigger: GAGCTCTTGCCGGGAAACCAAGAGAAGGCACACTCT...CAACAGGCATTGCTGATGCTCATACATGCTCAGTTTTGTTTGTAGACATGCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS GCA 72 bp | TTAGTCTTTGACTTCACAAGCTCACAGGAGGCAGGATaGTCAAACATGTCGTCCGCGGGCCAGTCGGAGGAC | + |
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Preference number: 6 (lower is better) Translates to: LVFDFTSSQEAG*SNMSSAGQSED Trigger: GTCCTCCGACTGGCCCGCGGACGACATGTTTGAGCATCCTGCCTCCTGTGAGCTTGTGAAGTCAAAGACTAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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| CDS GCA 72 bp | GAAGAAGTCGTTATGCCCCGGGAACTGGCCAGAGTGTaGCTTCTCTTGGTTTCCCGGCAAGAGCTCATAATT | + |
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Preference number: 6 (lower is better) Translates to: EEVVMPRELARV*LLLVSRQELII Trigger: AATTATGAGCTCTTGCCGGGAAACCAAGAGAAGGCACACTCTGGCCAGTTCCCGGGGCATAACGACTTCTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068958.9 ENSMUST00000233363.2 |
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| CDS TCA 72 bp | TGGACTGCCCCATTCTCTAACAGACTACTTTGCTCCTaGACTTTCTCTTCCATGACAGGCTCACAGCTGAGC | + |
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Preference number: 6 (lower is better) Translates to: WTAPFSNRLLCS*TFSSMTGSQLS Trigger: GCTCAGCTGTGAGCCTGTCATGGAAGAGAAAGTTCAGGAGCAAAGTAGTCTGTTAGAGAATGGGGCAGTCCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000068958.9 |
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