Pregenerated sensors for CDC42EP2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000045664Ensembl transcript IDs: ENSMUST00000055458.6
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CACTTTTGGCTTCCTGACTGTGGCTGCCTCAAGCCCCTGCTCCCGTaGCTCCTCAGCCTAGTGGACTGGGCTGCACCCAGGCACCAGGAT | + |
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Preference number: 1 (lower is better) Translates to: HFWLPDCGCLKPLLP*LLSLVDWAAPRHQD Trigger: ATCCTGGTGCCTGGGTGCAGCCCAGTCCACTAGGCTGAGGAGTCACGGGAGCAGGGGCTTGAGGCAGCCACAGTCAGGAAGCCAAAAGTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 90 bp | GCTGAGCCCAGCCCCTTTGTAAGAACAGCCAGCATTCGTATCCAGTaGGCCATCTCTCCAGCTCCTGCCAGCCCCTACCTGCCAGACACC | + |
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Preference number: 1 (lower is better) Translates to: AEPSPFVRTASIRIQ*AISPAPASPYLPDT Trigger: GGTGTCTGGCAGGTAGGGGCTGGCAGGAGCTGGAGAGATGGCCCACTGGATACGAATGCTGGCTGTTCTTACAAAGGGGCTGGGCTCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR TCA 90 bp | GTGGAGTGGGGTGGCAGGGAGGCCAGAAGAGGCATCGTATGGTTGTaGGCTGCCCTGTGGGTTCTGGGAATTGAACCATGGTCCTCTGGA | + |
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Preference number: 1 (lower is better) Translates to: VEWGGREARRGIVWL*AALWVLGIEPWSSG Trigger: TCCAGAGGACCATGGTTCAATTCCCAGAACCCACAGGGCAGCTCACAACCATACGATGCCTCTTCTGGCCTCCCTGCCACCCCACTCCAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 90 bp | AGCCCACTGTTCATGGAGACTGGCCGACCTTCAGAGGGATACCCCTaGGACAAGGGGACAGGATGCTCAGCCACCAGCAGCAACATGTTT | + |
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Preference number: 1 (lower is better) Translates to: SPLFMETGRPSEGYP*DKGTGCSATSSNMF Trigger: AAACATGTTGCTGCTGGTGGCTGAGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCCAGTCTCCATGAACAGTGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR TCA 90 bp | AAGGCACAACCTCTGCGGAACCTTCTAGGGTGGGCTTTTCCCACATaGGCCCACTGTTCATGGAGACTGGCCGACCTTCAGAGGGATACC | + |
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Preference number: 1 (lower is better) Translates to: KAQPLRNLLGWAFPT*AHCSWRLADLQRDT Trigger: GGTATCCCTCTGAAGGTCGGCCAGTCTCCATGAACAGTGGGCTCATGTGGGAAAAGCCCACCCTAGAAGGTTCCGCAGAGGTTGTGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 90 bp | GCTCAGCCACCAGCAGCAACATGTTTTATTGCGACCAGAATTCCCTaGTCATGTGAGGAAGGGTTGGGACAGGACACAAGGCGGGAGATG | + |
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Preference number: 1 (lower is better) Translates to: AQPPAATCFIATRIP*SCEEGLGQDTRREM Trigger: CATCTCCCGCCTTGTGTCCTGTCCCAACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATGTTGCTGCTGGTGGCTGAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 90 bp | CATGTTTTATTGCGACCAGAATTCCCTGGTCATGTGAGGAAGGGTTaGGACAGGACACAAGGCGGGAGATGTCACGATTTCTGGACTCCC | + |
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Preference number: 1 (lower is better) Translates to: HVLLRPEFPGHVRKG*DRTQGGRCHDFWTP Trigger: GGGAGTCCAGAAATCGTGACATCTCCCGCCTTGTGTCCTGTCCCAACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR TCA 90 bp | ACCAGCAGCAACATGTTTTATTGCGACCAGAATTCCCTGGTCATGTaGGGAAGGGTTGGGACAGGACACAAGGCGGGAGATGTCACGATT | + |
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Preference number: 1 (lower is better) Translates to: TSSNMFYCDQNSLVM*GRVGTGHKAGDVTI Trigger: AATCGTGACATCTCCCGCCTTGTGTCCTGTCCCAACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATGTTGCTGCTGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 90 bp | AGCTCCAACGTAACCAGTGCAGATTATTCTATGTCCTTCTCACTGTaGGTGCAGACTGAAGTACCACATCCAGGAGGGAAGGCACAACCT | + |
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Preference number: 1 (lower is better) Translates to: SSNVTSADYSMSFSL*VQTEVPHPGGKAQP Trigger: AGGTTGTGCCTTCCCTCCTGGATGTGGTACTTCAGTCTGCACCCACAGTGAGAAGGACATAGAATAATCTGCACTGGTTACGTTGGAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 90 bp | AGACAGGGTCTATCTACATATCTGAGTTCACTATGTAGACTAGGTTaGCTTCAAACTCACAAAGATCCACCTGCTTTTGCCTCTCAAATG | + |
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Preference number: 1 (lower is better) Translates to: RQGLSTYLSSLCRLG*LQTHKDPPAFASQM Trigger: CATTTGAGAGGCAAAAGCAGGTGGATCTTTGTGAGTTTGAAGCCAACCTAGTCTACATAGTGAACTCAGATATGTAGATAGACCCTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR TCA 90 bp | TCTCTAAGGCAACTTCTGCATGGCTCCTCTGTGGATGTTGTTAGATaGAAACAAAGATACACTCTGTCCATTAGGAGAAGGGAAAACAAA | + |
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Preference number: 1 (lower is better) Translates to: SLRQLLHGSSVDVVR*KQRYTLSIRRRENK Trigger: TTTGTTTTCCCTTCTCCTAATGGACAGAGTGTATCTTTGTTTTCATCTAACAACATCCACAGAGGAGCCATGCAGAAGTTGCCTTAGAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR TCA 90 bp | GGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTCAGCCACCGGCAGTGAGGGCAAATaGCCAAAGAGATTCAGGAGT | + |
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Preference number: 2 (lower is better) Translates to: GRPSEGYPWDKGTGCSATGSEGK*PKRFRS Trigger: ACTCCTGAATCTCTTTGGTCATTTGCCCTCACTGCC...GGTGGCTGAGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | GGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTCAGCCACCAACAAAGGCTCAAAATaGCAGTCACTAGCCAGCACC | + |
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Preference number: 2 (lower is better) Translates to: GRPSEGYPWDKGTGCSATNKGSK*QSLAST Trigger: GGTGCTGGCTAGTGACTGCCATTTTGAGCCTTTGTT...GGTGGCTGAGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | GGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTCAGCCACCAAGGCAACTTCTGCATaGCTCCTCTGTGGATGTTGT | + |
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Preference number: 2 (lower is better) Translates to: GRPSEGYPWDKGTGCSATKATSA*LLCGCC Trigger: ACAACATCCACAGAGGAGCCATGCAGAAGTTGCCTT...GGTGGCTGAGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR TCA 90 bp | GTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCAAGCCCCTGCTCCCGTaGCTCCTCAGCCTAGTGGAC | + |
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Preference number: 2 (lower is better) Translates to: VRVLENSKFCVALAVLELKPLLP*LLSLVD Trigger: GTCCACTAGGCTGAGGAGTCACGGGAGCAGGGGCTT...GAGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | GTGAGGGCAAATGACCAAAGAGATTCAGGAGTCTCTAAGGCAACTTCTGCATGGGGCATCAGCACAGCCTaGGCGACCTGCCTGGCCAGC | + |
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Preference number: 2 (lower is better) Translates to: VRANDQRDSGVSKATSAWGISTA*ATCLAS Trigger: GCTGGCCAGGCAGGTCGCCCAGGCTGTGCTGATGCC...CCATGCAGAAGTTGCCTTAGAGACTCCTGAATCTCTTTGGTCATTTGCCCTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR GCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCTTCCTGACTGTGGCTaGCTCAAGCCCCTGCTCCCG | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTLPDCG*LKPLLP Trigger: CGGGAGCAGGGGCTTGAGGCAGCCACAGTCAGGAAG...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CAA 90 bp | GGACAAGGGGACAGGATGCTCAGCCACCAGCAGCAACATGTTTTATaGCGACCAGAATTCCCTGGTCATGTGAGGAAGGGTTGGGACAGG | + |
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Preference number: 2 (lower is better) Translates to: GQGDRMLSHQQQHVL*RPEFPGHVRKGWDR Trigger: CCTGTCCCAACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATGTTGCTGCTGGTGGCTGAGCATCCTGTCCCCTTGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR GCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCATCTCTCCAGCTCCTaGCAGCCCCTACCTGCCAGA | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTHLSSS*QPLPAR Trigger: TCTGGCAGGTAGGGGCTGGCAGGAGCTGGAGAGATG...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCATGTGAGGAAGGGTTaGGACAGGACACAAGGCGGG | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTHVRKG*DRTQGG Trigger: CCCGCCTTGTGTCCTGTCCCAACCCTTCCTCACATG...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | GTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCCTGCCCTGTGGGTTCTaGGAATTGAACCATGGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VRVLENSKFCVALAVLELLPCGF*ELNHGP Trigger: AGGACCATGGTTCAATTCCCAGAACCCACAGGGCAG...GAGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CAA 90 bp | ACATGTTTTATTGCGACCAGAATTCCCTGGTCATGTGAGGAAGGGTaGGGACAGGACACAAGGCGGGAGATGTCACGATTTCTGGACTCC | + |
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Preference number: 2 (lower is better) Translates to: TCFIATRIPWSCEEG*GQDTRREMSRFLDS Trigger: GGAGTCCAGAAATCGTGACATCTCCCGCCTTGTGTCCTGTCCCAACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CAA 90 bp | GAAGAGGCATCGTATGGTTGTGAGCTGCCCTGTGGGTTCTGGGAATaGAACCATGGTCCTCTGGAAAAGGAGCCAGTTCTCTTAACCAGT | + |
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Preference number: 2 (lower is better) Translates to: EEASYGCELPCGFWE*NHGPLEKEPVLLTS Trigger: ACTGGTTAAGAGAACTGGCTCCTTTTCCAGAGGACCATGGTTCAATTCCCAGAACCCACAGGGCAGCTCACAACCATACGATGCCTCTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTAGCATTCGTATCCAGTaGGCCATCTCTCCAGCTCCT | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTSIRIQ*AISPAP Trigger: AGGAGCTGGAGAGATGGCCCACTGGATACGAATGCT...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCTGGGAATTGAACCATaGTCCTCTGGAAAAGGAGCC | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTLGIEP*SSGKGA Trigger: GGCTCCTTTTCCAGAGGACCATGGTTCAATTCCCAG...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR TCA 90 bp | GGCTTTTCCCACATGAGCCCACTGTTCATGGAGACTGGCCGACCTTCAGAGGGAGTGGATGTTGTTAGATaGAAACAAAGATACACTCTG | + |
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Preference number: 2 (lower is better) Translates to: GFSHMSPLFMETGRPSEGVDVVR*KQRYTL Trigger: CAGAGTGTATCTTTGTTTTCATCTAACAACATCCAC...TCCCTCTGAAGGTCGGCCAGTCTCCATGAACAGTGGGCTCATGTGGGAAAAGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTATGTCCTTCTCACTGTaGGTGCAGACTGAAGTACCA | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTMSFSL*VQTEVP Trigger: TGGTACTTCAGTCTGCACCCACAGTGAGAAGGACAT...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCACAGATATCACTTTTaGCTTCCTGACTGTGGCTGC | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTHRYHF*LPDCGC Trigger: GCAGCCACAGTCAGGAAGCCAAAAGTGATATCTGTG...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTTTCTGCCCATTCATGTaGCCATTCCCTTATCAGCTC | + |
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Preference number: 2 (lower is better) Translates to: CTCPREQQILCSPGCPGTFCPFM*PFPYQL Trigger: GAGCTGATAAGGGAATGGCCACATGAATGGGCAGAA...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR TCA 90 bp | GTGTTTATTGGACAGCTAGCAATGTCAAATGTTCCTTCAGTACACTGGCTTTTATGTGACCTGGGATCCTaGCTCCTAGGTCAGGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: VFIGQLAMSNVPSVHWLLCDLGS*LLGQGQ Trigger: TTGGCCCTGACCTAGGAGTCAGGATCCCAGGTCACA...TAAAAGCCAGTGTACTGAAGGAACATTTGACATTGCTAGCTGTCCAATAAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR TCA 90 bp | GTGTTTATTGGACAGCTAGCAATGTCAAATGTTCCTTCAGTACACTGGCTTTTAGGCATCGTATGGTTGTaGGCTGCCCTGTGGGTTCTG | + |
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Preference number: 2 (lower is better) Translates to: VFIGQLAMSNVPSVHWLLGIVWL*AALWVL Trigger: CAGAACCCACAGGGCAGCTCACAACCATACGATGCC...TAAAAGCCAGTGTACTGAAGGAACATTTGACATTGCTAGCTGTCCAATAAACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR TCA 90 bp | GTGTTTATTGGACAGCTAGCAATGTCAAATGTTCCTTCAGTACACTGGCTTTTATGGGCTTTTCCCACATaGGCCCACTGTTCATGGAGA | + |
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Preference number: 2 (lower is better) Translates to: VFIGQLAMSNVPSVHWLLWAFPT*AHCSWR Trigger: TCTCCATGAACAGTGGGCTCATGTGGGAAAAGCCCA...TAAAAGCCAGTGTACTGAAGGAACATTTGACATTGCTAGCTGTCCAATAAACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR GCA 90 bp | ACCAGTGCAGATTATTCTATGTCCTTCTCACTGTGGGTGCAGACTGAAGTACCAAGCAACATGTTTTATTaGGACCAGAATTCCCTGGTC | + |
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Preference number: 2 (lower is better) Translates to: TSADYSMSFSLWVQTEVPSNMFY*DQNSLV Trigger: GACCAGGGAATTCTGGTCGCAATAAAACATGTTGCT...TGGTACTTCAGTCTGCACCCACAGTGAGAAGGACATAGAATAATCTGCACTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR GCA 90 bp | AGACAGGGTCTATCTACATATCTGAGTTCACTATGTAGACTAGGTTGGCTTCAAAAATCTGCCTGCCTCTaGCTTCCAAGTGCTGGGATT | + |
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Preference number: 2 (lower is better) Translates to: RQGLSTYLSSLCRLGWLQKSACL*LPSAGI Trigger: AATCCCAGCACTTGGAAGGCAGAGGCAGGCAGATTT...TTGAAGCCAACCTAGTCTACATAGTGAACTCAGATATGTAGATAGACCCTGTCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | ACCAGTGCAGATTATTCTATGTCCTTCTCACTGTGGGTGCAGACTGAAGTACCATGCATGGCTCCTCTGTaGATGTTGTTAGATGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: TSADYSMSFSLWVQTEVPCMAPL*MLLDEN Trigger: GTTTTCATCTAACAACATCCACAGAGGAGCCATGCA...TGGTACTTCAGTCTGCACCCACAGTGAGAAGGACATAGAATAATCTGCACTGGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR GCA 90 bp | AGACAGGGTCTATCTACATATCTGAGTTCACTATGTAGACTAGGTTGGCTTCAAAGATCCACCTGCTTTTaGCTCTCAAATGCTAGGACT | + |
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Preference number: 2 (lower is better) Translates to: RQGLSTYLSSLCRLGWLQRSTCF*LSNART Trigger: AGTCCTAGCATTTGAGAGGCAAAAGCAGGTGGATCT...TTGAAGCCAACCTAGTCTACATAGTGAACTCAGATATGTAGATAGACCCTGTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | AACTCACAAAGATCCACCTGCTTTTGCCTCTCAAATGCTAGGACTGAAGGTCACTTTTTAAAAGTATATTaGCCCATGGTTTGTCCAGCT | + |
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Preference number: 2 (lower is better) Translates to: NSQRSTCFCLSNARTEGHFLKVY*PMVCPA Trigger: AGCTGGACAAACCATGGGCCAATATACTTTTAAAAA...GTGACCTTCAGTCCTAGCATTTGAGAGGCAAAAGCAGGTGGATCTTTGTGAGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CCA 90 bp | AGACAGGGTCTATCTACATATCTGAGTTCACTATGTAGACTAGGTTGGCTTCAACTGCCAGGCATTTACTaGCTTTGTTGTTTTAAAGAC | + |
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Preference number: 2 (lower is better) Translates to: RQGLSTYLSSLCRLGWLQLPGIY*LCCFKD Trigger: GTCTTTAAAACAACAAAGCCAGTAAATGCCTGGCAG...TTGAAGCCAACCTAGTCTACATAGTGAACTCAGATATGTAGATAGACCCTGTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR GCA 72 bp | AGTGGGCCATCTCTCCAGCTCCTGCCAGCCCCTACCTaGCAGACACCTAAATCAATGGCCAATCTCCACCCC | + |
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Preference number: 3 (lower is better) Translates to: SGPSLQLLPAPT*QTPKSMANLHP Trigger: GGGGTGGAGATTGGCCATTGATTTAGGTGTCTGGCAGGTAGGGGCTGGCAGGAGCTGGAGAGATGGCCCACT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 72 bp | CACTTATGTGCTTGGTGCTGGGGCTGTGGAGTGGGGTaGCAGGGAGGCCAGAAGAGGCATCGTATGGTTGTG | + |
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Preference number: 3 (lower is better) Translates to: HLCAWCWGCGVG*QGGQKRHRMVV Trigger: CACAACCATACGATGCCTCTTCTGGCCTCCCTGCCACCCCACTCCACAGCCCCAGCACCAAGCACATAAGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR-3UTR CAA 90 bp | TGGAGACTGGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTAGGGAAAGGGGGCAATaGGCAGTGAGGGCAAATGAC | + |
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Preference number: 3 (lower is better) Translates to: WRLADLQRDTPGTRGQDARERGQ*AVRAND Trigger: GTCATTTGCCCTCACTGCCAATTGCCCCCTTTCCCT...AGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCCAGTCTCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR TCA 72 bp | CCTCTGCGGAACCTTCTAGGGTGGGCTTTTCCCACATaGGCCCACTGTTCATGGAGACTGGCCGACCTTCAG | + |
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Preference number: 3 (lower is better) Translates to: PLRNLLGWAFPT*AHCSWRLADLQ Trigger: CTGAAGGTCGGCCAGTCTCCATGAACAGTGGGCTCATGTGGGAAAAGCCCACCCTAGAAGGTTCCGCAGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR TCA 72 bp | GGTGGCAGGGAGGCCAGAAGAGGCATCGTATGGTTGTaGGCTGCCCTGTGGGTTCTGGGAATTGAACCATGG | + |
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Preference number: 3 (lower is better) Translates to: GGREARRGIVWL*AALWVLGIEPW Trigger: CCATGGTTCAATTCCCAGAACCCACAGGGCAGCTCACAACCATACGATGCCTCTTCTGGCCTCCCTGCCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 72 bp | AGCCCCTTTGTAAGAACAGCCAGCATTCGTATCCAGTaGGCCATCTCTCCAGCTCCTGCCAGCCCCTACCTG | + |
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Preference number: 3 (lower is better) Translates to: SPFVRTASIRIQ*AISPAPASPYL Trigger: CAGGTAGGGGCTGGCAGGAGCTGGAGAGATGGCCCACTGGATACGAATGCTGGCTGTTCTTACAAAGGGGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR GCA 72 bp | CAGCATTCGTATCCAGTGGGCCATCTCTCCAGCTCCTaGCAGCCCCTACCTGCCAGACACCTAAATCAATGG | + |
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Preference number: 3 (lower is better) Translates to: QHSYPVGHLSSS*QPLPARHLNQW Trigger: CCATTGATTTAGGTGTCTGGCAGGTAGGGGCTGGCAGGAGCTGGAGAGATGGCCCACTGGATACGAATGCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR TCA 72 bp | CCCACAGGGACCCGAGGGAAAGGGGGCAATTGGCAGTaGGGGCAAATGACCAAAGAGATTCAGGAGTCTCTA | + |
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Preference number: 3 (lower is better) Translates to: PTGTRGKGGNWQ*GQMTKEIQESL Trigger: TAGAGACTCCTGAATCTCTTTGGTCATTTGCCCTCACTGCCAATTGCCCCCTTTCCCTCGGGTCCCTGTGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| 3UTR CCA 72 bp | TGGGACAGGACACAAGGCGGGAGATGTCACGATTTCTaGACTCCCAGACCCAAACACAAAGACCAGTGGGGA | + |
|
Preference number: 3 (lower is better) Translates to: WDRTQGGRCHDF*TPRPKHKDQWG Trigger: TCCCCACTGGTCTTTGTGTTTGGGTCTGGGAGTCCAGAAATCGTGACATCTCCCGCCTTGTGTCCTGTCCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR TCA 72 bp | GGTGTGCACCACCACACCCGGCCCAGCAAATACTCTTaGCCATTAAGACATCTCTCCAGCCCTCAAGTGCAA | + |
|
Preference number: 3 (lower is better) Translates to: GVHHHTRPSKYS*PLRHLSSPQVQ Trigger: TTGCACTTGAGGGCTGGAGAGATGTCTTAATGGTCAAGAGTATTTGCTGGGCCGGGTGTGGTGGTGCACACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CCA 72 bp | TCCTGCCAGCCCCTACCTGCCAGACACCTAAATCAATaGCCAATCTCCACCCCTGATACTTGGTTTGGATGG | + |
|
Preference number: 3 (lower is better) Translates to: SCQPLPARHLNQ*PISTPDTWFGW Trigger: CCATCCAAACCAAGTATCAGGGGTGGAGATTGGCCATTGATTTAGGTGTCTGGCAGGTAGGGGCTGGCAGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CCA 72 bp | GAGGCATCGTATGGTTGTGAGCTGCCCTGTGGGTTCTaGGAATTGAACCATGGTCCTCTGGAAAAGGAGCCA | + |
|
Preference number: 3 (lower is better) Translates to: EASYGCELPCGF*ELNHGPLEKEP Trigger: TGGCTCCTTTTCCAGAGGACCATGGTTCAATTCCCAGAACCCACAGGGCAGCTCACAACCATACGATGCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR TCA 72 bp | CGTATGGTTGTGAGCTGCCCTGTGGGTTCTGGGAATTaGACCATGGTCCTCTGGAAAAGGAGCCAGTTCTCT | + |
|
Preference number: 3 (lower is better) Translates to: RMVVSCPVGSGN*TMVLWKRSQFS Trigger: AGAGAACTGGCTCCTTTTCCAGAGGACCATGGTTCAATTCCCAGAACCCACAGGGCAGCTCACAACCATACG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR TCA 72 bp | AGAAGTTGTGAGTTCAATGCGCAGCACCACATAAGCTaGGCCCAGCCCCTTTGTAAGAACAGCCAGCATTCG | + |
|
Preference number: 3 (lower is better) Translates to: RSCEFNAQHHIS*AQPLCKNSQHS Trigger: CGAATGCTGGCTGTTCTTACAAAGGGGCTGGGCTCAGCTTATGTGGTGCTGCGCATTGAACTCACAACTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CCA 72 bp | CCAGCAGCAACATGTTTTATTGCGACCAGAATTCCCTaGTCATGTGAGGAAGGGTTGGGACAGGACACAAGG | + |
|
Preference number: 3 (lower is better) Translates to: PAATCFIATRIP*SCEEGLGQDTR Trigger: CCTTGTGTCCTGTCCCAACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATGTTGCTGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR TCA 72 bp | AACATGTTTTATTGCGACCAGAATTCCCTGGTCATGTaGGGAAGGGTTGGGACAGGACACAAGGCGGGAGAT | + |
|
Preference number: 3 (lower is better) Translates to: NMFYCDQNSLVM*GRVGTGHKAGD Trigger: ATCTCCCGCCTTGTGTCCTGTCCCAACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR TCA 72 bp | AGATTATTCTATGTCCTTCTCACTGTGGGTGCAGACTaGAGTACCACATCCAGGAGGGAAGGCACAACCTCT | + |
|
Preference number: 3 (lower is better) Translates to: RLFYVLLTVGAD*STTSRREGTTS Trigger: AGAGGTTGTGCCTTCCCTCCTGGATGTGGTACTTCAGTCTGCACCCACAGTGAGAAGGACATAGAATAATCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR GCA 72 bp | AGGTTGGCTTCAAACTCACAAAGATCCACCTGCTTTTaGCTCTCAAATGCTAGGACTGAAGGTCACTGCCAG | + |
|
Preference number: 3 (lower is better) Translates to: RLASNSQRSTCF*LSNARTEGHCQ Trigger: CTGGCAGTGACCTTCAGTCCTAGCATTTGAGAGGCAAAAGCAGGTGGATCTTTGTGAGTTTGAAGCCAACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CCA 72 bp | GTAACCAGTGCAGATTATTCTATGTCCTTCTCACTGTaGGTGCAGACTGAAGTACCACATCCAGGAGGGAAG | + |
|
Preference number: 3 (lower is better) Translates to: VTSADYSMSFSL*VQTEVPHPGGK Trigger: CTTCCCTCCTGGATGTGGTACTTCAGTCTGCACCCACAGTGAGAAGGACATAGAATAATCTGCACTGGTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CCA 72 bp | AAAGAAAGTAATGGAAACACCCACAGATATCACTTTTaGCTTCCTGACTGTGGCTGCCTCAAGCCCCTGCTC | + |
|
Preference number: 3 (lower is better) Translates to: KESNGNTHRYHF*LPDCGCLKPLL Trigger: GAGCAGGGGCTTGAGGCAGCCACAGTCAGGAAGCCAAAAGTGATATCTGTGGGTGTTTCCATTACTTTCTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR-3UTR CAA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGCAACATGTTTTATaGCGACCAGAATTCCCTGGT | + |
|
Preference number: 3 (lower is better) Translates to: CTCPREQQILCSPGCPGTQQHVL*RPEFPG Trigger: ACCAGGGAATTCTGGTCGCAATAAAACATGTTGCTG...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR-3UTR CAA 90 bp | AGACAGGGTCTATCTACATATCTGAGTTCACTATGTAGACTAGGTTGGCTTCAATGTGGGTTCTGGGAATaGAACCATGGTCCTCTGGAA | + |
|
Preference number: 3 (lower is better) Translates to: RQGLSTYLSSLCRLGWLQCGFWE*NHGPLE Trigger: TTCCAGAGGACCATGGTTCAATTCCCAGAACCCACA...TTGAAGCCAACCTAGTCTACATAGTGAACTCAGATATGTAGATAGACCCTGTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR-3UTR CAA 90 bp | GTGTTTATTGGACAGCTAGCAATGTCAAATGTTCCTTCAGTACACTGGCTTTTAGTATCACTTATGTGCTaGGTGCTGGGGCTGTGGAGT | + |
|
Preference number: 3 (lower is better) Translates to: VFIGQLAMSNVPSVHWLLVSLMC*VLGLWS Trigger: ACTCCACAGCCCCAGCACCAAGCACATAAGTGATAC...TAAAAGCCAGTGTACTGAAGGAACATTTGACATTGCTAGCTGTCCAATAAACAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR TCA 72 bp | CAACTTCTGCATGGCTCCTCTGTGGATGTTGTTAGATaGAAACAAAGATACACTCTGTCCATTAGGAGAAGG | + |
|
Preference number: 3 (lower is better) Translates to: QLLHGSSVDVVR*KQRYTLSIRRR Trigger: CCTTCTCCTAATGGACAGAGTGTATCTTTGTTTTCATCTAACAACATCCACAGAGGAGCCATGCAGAAGTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR GCA 72 bp | TGCTTTTGCCTCTCAAATGCTAGGACTGAAGGTCACTaGCAGGCATTTACTGGCTTTGTTGTTTTAAAGACT | + |
|
Preference number: 3 (lower is better) Translates to: CFCLSNARTEGH*QAFTGFVVLKT Trigger: AGTCTTTAAAACAACAAAGCCAGTAAATGCCTGGCAGTGACCTTCAGTCCTAGCATTTGAGAGGCAAAAGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR-3UTR CAA 90 bp | GTGTTTATTGGACAGCTAGCAATGTCAAATGTTCCTTCAGTACACTGGCTTTTATGTTTTCATCAGGTATaGTCACAGCTCCAACGTAAC | + |
|
Preference number: 3 (lower is better) Translates to: VFIGQLAMSNVPSVHWLLCFHQV*SQLQRN Trigger: GTTACGTTGGAGCTGTGACAATACCTGATGAAAACA...TAAAAGCCAGTGTACTGAAGGAACATTTGACATTGCTAGCTGTCCAATAAACAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CCA 72 bp | GTCTTATCACAAATACAGAATTTCTGCCCATTCATGTaGCCATTCCCTTATCAGCTCATCTCAATCTTTTGC | + |
|
Preference number: 3 (lower is better) Translates to: VLSQIQNFCPFM*PFPYQLISIFC Trigger: GCAAAAGATTGAGATGAGCTGATAAGGGAATGGCCACATGAATGGGCAGAAATTCTGTATTTGTGATAAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR GCA 72 bp | GAAAACACAAAAGTCTTATCACAAATACAGAATTTCTaGCCATTCATGTGGCCATTCCCTTATCAGCTCATC | + |
|
Preference number: 3 (lower is better) Translates to: ENTKVLSQIQNF*PFMWPFPYQLI Trigger: GATGAGCTGATAAGGGAATGGCCACATGAATGGGCAGAAATTCTGTATTTGTGATAAGACTTTTGTGTTTTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | GGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTCAGCCACCGGCAGAGTGAGGGCCTaGGGGCCACCAATTACAGGG | + |
|
Preference number: 4 (lower is better) Translates to: GRPSEGYPWDKGTGCSATGRVRA*GPPITG Trigger: CCCTGTAATTGGTGGCCCCCAGGCCCTCACTCTGCC...GGTGGCTGAGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR TCA 90 bp | TGGAGACTGGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTGTTTTTGAGCAGAGGTaGCAGCCCATCAGGGAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: WRLADLQRDTPGTRGQDAVFEQR*QPIREL Trigger: GAGCTCCCTGATGGGCTGTCACCTCTGCTCAAAAAC...AGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCCAGTCTCCA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR TCA 90 bp | GGCTTTTCCCACATGAGCCCACTGTTCATGGAGACTGGCCGACCTTCAGAGGGATGGGCTGATCATGTCTaGGGACAGCAGGTCCCGAAG | + |
|
Preference number: 4 (lower is better) Translates to: GFSHMSPLFMETGRPSEGWADHV*GQQVPK Trigger: CTTCGGGACCTGCTGTCCTCAGACATGATCAGCCCA...TCCCTCTGAAGGTCGGCCAGTCTCCATGAACAGTGGGCTCATGTGGGAAAAGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | TGGAGACTGGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTTTCCACCGCTGTTCCTaGAAGGAGATGGAACTTGCC | + |
|
Preference number: 4 (lower is better) Translates to: WRLADLQRDTPGTRGQDAFHRCS*KEMELA Trigger: GGCAAGTTCCATCTCCTTCCAGGAACAGCGGTGGAA...AGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCCAGTCTCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR GCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTGGCCCCAGGTCCACATaGAGGGACAGCAGGGAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: CTCPREQQILCSPGCPGTGPRST*RDSREL Trigger: CAGCTCCCTGCTGTCCCTGCATGTGGACCTGGGGCC...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | GTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCGGGCGAGCCAGCCTCTaGAATCCTCCAGACGTCCAC | + |
|
Preference number: 4 (lower is better) Translates to: VRVLENSKFCVALAVLELGRASL*NPPDVH Trigger: GTGGACGTCTGGAGGATTCCAGAGGCTGGCTCGCCC...GAGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | GTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCGGCTTAGGTGGAGCCTaGGCTGTAGGCAGAGTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: VRVLENSKFCVALAVLELGLGGA*AVGRVR Trigger: CCTCACTCTGCCTACAGCCCAGGCTCCACCTAAGCC...GAGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | TGTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTGGGCTCATCCCATTGTaGGGCGAGCCAGCCTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: CTCPREQQILCSPGCPGTGLIPL*GEPASG Trigger: TCCAGAGGCTGGCTCGCCCCACAATGGGATGAGCCC...AGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTACA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR GCA 90 bp | TGGAGACTGGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTTCTCTTTCTTGCCTTTaGGGCTGCCACGTTTCAAAT | + |
|
Preference number: 4 (lower is better) Translates to: WRLADLQRDTPGTRGQDASLSCL*GCHVSN Trigger: ATTTGAAACGTGGCAGCCGCAAAGGCAAGAAAGAGA...AGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCCAGTCTCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | GTGAGGGCAAATGACCAAAGAGATTCAGGAGTCTCTAAGGCAACTTCTGCATGGGCGAGGAGGCTTAGGTaGAGCCTGGGCTGTAGGCAG | + |
|
Preference number: 4 (lower is better) Translates to: VRANDQRDSGVSKATSAWARRLR*SLGCRQ Trigger: CTGCCTACAGCCCAGGCTCCACCTAAGCCTCCTCGC...CCATGCAGAAGTTGCCTTAGAGACTCCTGAATCTCTTTGGTCATTTGCCCTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CAA 72 bp | AGGTGTGCACCACCACACCCGGCCCAGCAAATACTCTaGACCATTAAGACATCTCTCCAGCCCTCAAGTGCA | + |
|
Preference number: 4 (lower is better) Translates to: RCAPPHPAQQIL*TIKTSLQPSSA Trigger: TGCACTTGAGGGCTGGAGAGATGTCTTAATGGTCAAGAGTATTTGCTGGGCCGGGTGTGGTGGTGCACACCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | GACCAAAGAGATTCAGGAGTCTCTAAGGCAACTTCTGCATGGCTCCTCTGTGGAATTTCCTGCCCCCTGTaGGGAAGGCTGTGGAGAAGG | + |
|
Preference number: 4 (lower is better) Translates to: DQRDSGVSKATSAWLLCGISCPL*GRLWRR Trigger: CCTTCTCCACAGCCTTCCCCACAGGGGGCAGGAAAT...TCCACAGAGGAGCCATGCAGAAGTTGCCTTAGAGACTCCTGAATCTCTTTGGTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CAA 72 bp | TCGTATGGTTGTGAGCTGCCCTGTGGGTTCTGGGAATaGAACCATGGTCCTCTGGAAAAGGAGCCAGTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: SYGCELPCGFWE*NHGPLEKEPVL Trigger: GAGAACTGGCTCCTTTTCCAGAGGACCATGGTTCAATTCCCAGAACCCACAGGGCAGCTCACAACCATACGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR GCA 90 bp | GTACGTGTCCTAGAGAACAGCAAATTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGGGAAGGTCAAAGCTaGCATCCTCCTCAGCCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: VRVLENSKFCVALAVLELREGQS*HPPQPL Trigger: AAGAGGCTGAGGAGGATGGCAGCTTTGACCTTCCCT...GAGTTCCAGGACAGCCAGGGCTACACAGAATTTGCTGTTCTCTAGGACACGTAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| 3UTR CAA 72 bp | GACAGGATGCTCAGCCACCAGCAGCAACATGTTTTATaGCGACCAGAATTCCCTGGTCATGTGAGGAAGGGT | + |
|
Preference number: 4 (lower is better) Translates to: DRMLSHQQQHVL*RPEFPGHVRKG Trigger: ACCCTTCCTCACATGACCAGGGAATTCTGGTCGCAATAAAACATGTTGCTGCTGGTGGCTGAGCATCCTGTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | GACCAAAGAGATTCAGGAGTCTCTAAGGCAACTTCTGCATGGCTCCTCTGTGGAGTAGTGCGAGTAAACTaGAAGGGAAGGTCAAAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: DQRDSGVSKATSAWLLCGVVRVN*KGRSKL Trigger: CAGCTTTGACCTTCCCTTCCAGTTTACTCGCACTAC...TCCACAGAGGAGCCATGCAGAAGTTGCCTTAGAGACTCCTGAATCTCTTTGGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CCA 90 bp | ACCAGTGCAGATTATTCTATGTCCTTCTCACTGTGGGTGCAGACTGAAGTACCACTGTGGAGAAGGCTGTaGAGATTCAAGGTGCAAGCG | + |
|
Preference number: 4 (lower is better) Translates to: TSADYSMSFSLWVQTEVPLWRRL*RFKVQA Trigger: CGCTTGCACCTTGAATCTCCACAGCCTTCTCCACAG...TGGTACTTCAGTCTGCACCCACAGTGAGAAGGACATAGAATAATCTGCACTGGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR GCA 90 bp | AACTCACAAAGATCCACCTGCTTTTGCCTCTCAAATGCTAGGACTGAAGGTCACGAAGCTTCTCTTTCTTaGCTTTGCGGCTGCCACGTT | + |
|
Preference number: 4 (lower is better) Translates to: NSQRSTCFCLSNARTEGHEASLS*LCGCHV Trigger: AACGTGGCAGCCGCAAAGGCAAGAAAGAGAAGCTTC...GTGACCTTCAGTCCTAGCATTTGAGAGGCAAAAGCAGGTGGATCTTTGTGAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR TCA 90 bp | TTAGATGAAAACAAAGATACACTCTGTCCATTAGGAGAAGGGAAAACAAAGGCTGGGAGATGGCGTTTTTaGGCAGAGGTGACAGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: LDENKDTLCPLGEGKTKAGRWRF*AEVTAH Trigger: ATGGGCTGTCACCTCTGCTCAAAAACGCCATCTCCC...AGCCTTTGTTTTCCCTTCTCCTAATGGACAGAGTGTATCTTTGTTTTCATCTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS CCA 90 bp | GACAGGAAGGGCTCCTCGGCCTCCGGCTCAGGGCTCATCCCATTGTaGGGCGAGCCAGCCTCTGGAATCCTCCAGACGTCCACATTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: DRKGSSASGSGLIPL*GEPASGILQTSTFP Trigger: AGGAAATGTGGACGTCTGGAGGATTCCAGAGGCTGGCTCGCCCCACAATGGGATGAGCCCTGAGCCGGAGGCCGAGGAGCCCTTCCTGTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS GCA 90 bp | GCCCCCTGTGGGGAAGGCTGTGGAGAAGGCTGTGGAGATTCAAGGTaGAAGCGAGGAGGCTTAGGTGGAGCCTGGGCTGTAGGCAGAGTG | + |
|
Preference number: 5 (lower is better) Translates to: APCGEGCGEGCGDSR*KRGGLGGAWAVGRV Trigger: CACTCTGCCTACAGCCCAGGCTCCACCTAAGCCTCCTCGCTTGCACCTTGAATCTCCACAGCCTTCTCCACAGCCTTCCCCACAGGGGGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS CCA 90 bp | GGCTGTGGAGATTCAAGGTGCAAGCGAGGAGGCTTAGGTGGAGCCTaGGCTGTAGGCAGAGTGAGGGCCTGGGGGCCACCAATTACAGGG | + |
|
Preference number: 5 (lower is better) Translates to: GCGDSRCKRGGLGGA*AVGRVRAWGPPITG Trigger: CCCTGTAATTGGTGGCCCCCAGGCCCTCACTCTGCCTACAGCCCAGGCTCCACCTAAGCCTCCTCGCTTGCACCTTGAATCTCCACAGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS TCA 90 bp | GGGGCCACCAATTACAGGGAGGGAGATGGCGTTTTTGAGCAGAGGTaGCAGCCCATCAGGGAGCTCTCGCCCACACACGGTTGTAGTGCG | + |
|
Preference number: 5 (lower is better) Translates to: GATNYREGDGVFEQR*QPIRELSPTHGCSA Trigger: CGCACTACAACCGTGTGTGGGCGAGAGCTCCCTGATGGGCTGTCACCTCTGCTCAAAAACGCCATCTCCCTCCCTGTAATTGGTGGCCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS GCA 90 bp | TCAGCCTCTTCCACCGCTGTTCCTGGAAGGAGATGGAACTTGCCCTaGAGGAAGGAGATGTCCCCAAACATGTCATCTCCGCCACCGCTG | + |
|
Preference number: 5 (lower is better) Translates to: SASSTAVPGRRWNLP*RKEMSPNMSSPPPL Trigger: CAGCGGTGGCGGAGATGACATGTTTGGGGACATCTCCTTCCTGCAGGGCAAGTTCCATCTCCTTCCAGGAACAGCGGTGGAAGAGGCTGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS GCA 90 bp | CCTCCTCAGCCTCTTCCACCGCTGTTCCTGGAAGGAGATGGAACTTaGCCTGCAGGAAGGAGATGTCCCCAAACATGTCATCTCCGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: PPQPLPPLFLEGDGT*PAGRRCPQTCHLRH Trigger: GTGGCGGAGATGACATGTTTGGGGACATCTCCTTCCTGCAGGGCAAGTTCCATCTCCTTCCAGGAACAGCGGTGGAAGAGGCTGAGGAGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS CCA 90 bp | AATCCTCCAGACGTCCACATTTCCTGCCCCCTGTGGGGAAGGCTGTaGAGAAGGCTGTGGAGATTCAAGGTGCAAGCGAGGAGGCTTAGG | + |
|
Preference number: 5 (lower is better) Translates to: NPPDVHISCPLWGRL*RRLWRFKVQARRLR Trigger: CCTAAGCCTCCTCGCTTGCACCTTGAATCTCCACAGCCTTCTCCACAGCCTTCCCCACAGGGGGCAGGAAATGTGGACGTCTGGAGGATT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CAA 90 bp | GGCCGACCTTCAGAGGGATACCCCTGGGACAAGGGGACAGGATGCTCAGCCACCTTCTCTTTCTTGCCTTaGCGGCTGCCACGTTTCAAA | + |
|
Preference number: 5 (lower is better) Translates to: GRPSEGYPWDKGTGCSATFSFLP*RLPRFK Trigger: TTTGAAACGTGGCAGCCGCAAAGGCAAGAAAGAGAA...GGTGGCTGAGCATCCTGTCCCCTTGTCCCAGGGGTATCCCTCTGAAGGTCGGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS CCA 90 bp | CTGCCATCCTCCTCAGCCTCTTCCACCGCTGTTCCTGGAAGGAGATaGAACTTGCCCTGCAGGAAGGAGATGTCCCCAAACATGTCATCT | + |
|
Preference number: 5 (lower is better) Translates to: LPSSSASSTAVPGRR*NLPCRKEMSPNMSS Trigger: AGATGACATGTTTGGGGACATCTCCTTCCTGCAGGGCAAGTTCCATCTCCTTCCAGGAACAGCGGTGGAAGAGGCTGAGGAGGATGGCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
||
| CDS-3UTR CAA 90 bp | GTGAGGGCAAATGACCAAAGAGATTCAGGAGTCTCTAAGGCAACTTCTGCATGGAGGGAGATGGCGTTTTaGAGCAGAGGTGACAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: VRANDQRDSGVSKATSAWREMAF*SRGDSP Trigger: TGGGCTGTCACCTCTGCTCAAAAACGCCATCTCCCT...CCATGCAGAAGTTGCCTTAGAGACTCCTGAATCTCTTTGGTCATTTGCCCTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS-3UTR CAA 90 bp | AGACAGGGTCTATCTACATATCTGAGTTCACTATGTAGACTAGGTTGGCTTCAACGAAGCTTCTCTTTCTaGCCTTTGCGGCTGCCACGT | + |
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Preference number: 5 (lower is better) Translates to: RQGLSTYLSSLCRLGWLQRSFSF*PLRLPR Trigger: ACGTGGCAGCCGCAAAGGCAAGAAAGAGAAGCTTCG...TTGAAGCCAACCTAGTCTACATAGTGAACTCAGATATGTAGATAGACCCTGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS CCA 72 bp | GGCTCCTCGGCCTCCGGCTCAGGGCTCATCCCATTGTaGGGCGAGCCAGCCTCTGGAATCCTCCAGACGTCC | + |
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Preference number: 6 (lower is better) Translates to: GSSASGSGLIPL*GEPASGILQTS Trigger: GGACGTCTGGAGGATTCCAGAGGCTGGCTCGCCCCACAATGGGATGAGCCCTGAGCCGGAGGCCGAGGAGCC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS CAA 72 bp | AAGGGCTCCTCGGCCTCCGGCTCAGGGCTCATCCCATaGTGGGGCGAGCCAGCCTCTGGAATCCTCCAGACG | + |
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Preference number: 6 (lower is better) Translates to: KGSSASGSGLIP*WGEPASGILQT Trigger: CGTCTGGAGGATTCCAGAGGCTGGCTCGCCCCACAATGGGATGAGCCCTGAGCCGGAGGCCGAGGAGCCCTT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS CAA 90 bp | TGGGACAGGAAGGGCTCCTCGGCCTCCGGCTCAGGGCTCATCCCATaGTGGGGCGAGCCAGCCTCTGGAATCCTCCAGACGTCCACATTT | + |
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Preference number: 6 (lower is better) Translates to: WDRKGSSASGSGLIP*WGEPASGILQTSTF Trigger: AAATGTGGACGTCTGGAGGATTCCAGAGGCTGGCTCGCCCCACAATGGGATGAGCCCTGAGCCGGAGGCCGAGGAGCCCTTCCTGTCCCA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS CCA 72 bp | CTCAGGGCTCATCCCATTGTGGGGCGAGCCAGCCTCTaGAATCCTCCAGACGTCCACATTTCCTGCCCCCTG | + |
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Preference number: 6 (lower is better) Translates to: LRAHPIVGRASL*NPPDVHISCPL Trigger: CAGGGGGCAGGAAATGTGGACGTCTGGAGGATTCCAGAGGCTGGCTCGCCCCACAATGGGATGAGCCCTGAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS GCA 72 bp | GGGGAAGGCTGTGGAGAAGGCTGTGGAGATTCAAGGTaGAAGCGAGGAGGCTTAGGTGGAGCCTGGGCTGTA | + |
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Preference number: 6 (lower is better) Translates to: GEGCGEGCGDSR*KRGGLGGAWAV Trigger: TACAGCCCAGGCTCCACCTAAGCCTCCTCGCTTGCACCTTGAATCTCCACAGCCTTCTCCACAGCCTTCCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS CCA 72 bp | TGGAATCCTCCAGACGTCCACATTTCCTGCCCCCTGTaGGGAAGGCTGTGGAGAAGGCTGTGGAGATTCAAG | + |
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Preference number: 6 (lower is better) Translates to: WNPPDVHISCPL*GRLWRRLWRFK Trigger: CTTGAATCTCCACAGCCTTCTCCACAGCCTTCCCCACAGGGGGCAGGAAATGTGGACGTCTGGAGGATTCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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| CDS GCA 72 bp | GCAGGTCCCGAAGCTTCTCTTTCTTGCCTTTGCGGCTaGCACGTTTCAAATAGATGGGGACCTTGGTGGACA | + |
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Preference number: 6 (lower is better) Translates to: AGPEASLSCLCG*HVSNRWGPWWT Trigger: TGTCCACCAAGGTCCCCATCTATTTGAAACGTGGCAGCCGCAAAGGCAAGAAAGAGAAGCTTCGGGACCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055458.6 |
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