Pregenerated sensors for CDC42 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006699Ensembl transcript IDs: ENSMUST00000030417.10, ENSMUST00000051477.13
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CATAAAGCAGTAAGCAGATACATGGATACCTTCCCCATCCCAGAATaGCAAACACTCCACCTACGGCACAAACAGCCAAAGCAAGAGCAA | + |
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Preference number: 1 (lower is better) Translates to: HKAVSRYMDTFPIPE*QTLHLRHKQPKQEQ Trigger: TTGCTCTTGCTTTGGCTGTTTGTGCCGTAGGTGGAGTGTTTGTCATTCTGGGATGGGGAAGGTATCCATGTATCTGCTTACTGCTTTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| 3UTR TCA 90 bp | ATGCCAGACCACATTCCCTTTTGCAATAATTCAAACCAAAAGCTCTaGGCATCAGGCAACTCAAGCAGCAGAAAGTTAAACAAGTCTAAC | + |
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Preference number: 1 (lower is better) Translates to: MPDHIPFCNNSNQKL*ASGNSSSRKLNKSN Trigger: GTTAGACTTGTTTAACTTTCTGCTGCTTGAGTTGCCTGATGCTCAGAGCTTTTGGTTTGAATTATTGCAAAAGGGAATGTGGTCTGGCAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| 3UTR-3UTR TCA 90 bp | CATGAGGCTCTCGCCATTTTTCTTGCGAAAGCTTCAGCCAGTTGTTCAAAGGTTAAGGAAGCAGGCCTGTaGCCTCATCACCTGAAAGGA | + |
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Preference number: 2 (lower is better) Translates to: HEALAIFLAKASASCSKVKEAGL*PHHLKG Trigger: TCCTTTCAGGTGATGAGGTCACAGGCCTGCTTCCTT...AACCTTTGAACAACTGGCTGAAGCTTTCGCAAGAAAAATGGCGAGAGCCTCATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051477.13 |
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| 3UTR-3UTR CCA 90 bp | ATCATGAGGCTCTCGCCATTTTTCTTGCGAAAGCTTCAGCCAGTTGTTCAAAGGAGTTCCATCACAGACTaGACCCACTCAGAGGTGGAG | + |
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Preference number: 2 (lower is better) Translates to: IMRLSPFFLRKLQPVVQRSSITD*THSEVE Trigger: CTCCACCTCTGAGTGGGTCCAGTCTGTGATGGAACT...CCTTTGAACAACTGGCTGAAGCTTTCGCAAGAAAAATGGCGAGAGCCTCATGAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051477.13 |
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| 3UTR-3UTR TCA 90 bp | TTTCACTGCACACAGGAAAACCATGAGAATCCTCCCTTCCCCATTACACTCTACTCAAACCAAAAGCTCTaGGCATCAGGCAACTCAAGC | + |
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Preference number: 2 (lower is better) Translates to: FHCTQENHENPPFPITLYSNQKL*ASGNSS Trigger: GCTTGAGTTGCCTGATGCTCAGAGCTTTTGGTTTGA...GTAGAGTGTAATGGGGAAGGGAGGATTCTCATGGTTTTCCTGTGTGCAGTGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| 3UTR-3UTR GCA 90 bp | CATGAGGCTCTCGCCATTTTTCTTGCGAAAGCTTCAGCCAGTTGTTCAAAGGTTCAGTCACATATAGAGTaGATCCTAGAAAGAGGGGCG | + |
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Preference number: 2 (lower is better) Translates to: HEALAIFLAKASASCSKVQSHIE*ILERGA Trigger: CGCCCCTCTTTCTAGGATGCACTCTATATGTGACTG...AACCTTTGAACAACTGGCTGAAGCTTTCGCAAGAAAAATGGCGAGAGCCTCATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000051477.13 |
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| 3UTR-3UTR CCA 90 bp | GGTTCGGCACTAACGAATCCACAAGATCAGGACTGGGGAAGGAGATTATCTAAATCACCTGAAAGGAGATaGCAATCATCAGCCATGATG | + |
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Preference number: 2 (lower is better) Translates to: GSALTNPQDQDWGRRLSKSPERR*QSSAMM Trigger: CATCATGGCTGATGATTGCCATCTCCTTTCAGGTGA...TTTAGATAATCTCCTTCCCCAGTCCTGATCTTGTGGATTCGTTAGTGCCGAACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000051477.13 |
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| 3UTR-3UTR TCA 90 bp | CACAAACAGCCAAAGCAAGAGCAACACAAAAGTTTCACTGCACACAGGAAAACCTTTGCTCTAAAGTGTTaGGTAAGAAGACGCAGAGGC | + |
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Preference number: 2 (lower is better) Translates to: HKQPKQEQHKSFTAHRKTFALKC*VRRRRG Trigger: GCCTCTGCGTCTTCTTACTCAACACTTTAGAGCAAA...GGTTTTCCTGTGTGCAGTGAAACTTTTGTGTTGCTCTTGCTTTGGCTGTTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| 3UTR-3UTR CCA 90 bp | GGTTCGGCACTAACGAATCCACAAGATCAGGACTGGGGAAGGAGATTATCTAAAACTAGACCTAGGGAGTaGAATGTGGAAATACTCTGT | + |
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Preference number: 2 (lower is better) Translates to: GSALTNPQDQDWGRRLSKTRPRE*NVEILC Trigger: ACAGAGTATTTCCACATTCCACTCCCTAGGTCTAGT...TTTAGATAATCTCCTTCCCCAGTCCTGATCTTGTGGATTCGTTAGTGCCGAACC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000051477.13 |
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| 3UTR-3UTR TCA 90 bp | CATGAGGCTCTCGCCATTTTTCTTGCGAAAGCTTCAGCCAGTTGTTCAAAGGTTGCAGCTTTGACAATCTaGATTAGTCTGTTACAGTCA | + |
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Preference number: 2 (lower is better) Translates to: HEALAIFLAKASASCSKVAALTI*ISLLQS Trigger: TGACTGTAACAGACTAATTCAGATTGTCAAAGCTGC...AACCTTTGAACAACTGGCTGAAGCTTTCGCAAGAAAAATGGCGAGAGCCTCATG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000051477.13 |
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| 3UTR TCA 72 bp | AGCTTCTTAAGGAAGCAGGCCTGTGACCTCATCACCTaGAAGGAGATGGCAATCATCAGCCATGATGTGTTT | + |
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Preference number: 3 (lower is better) Translates to: SFLRKQACDLIT*KEMAIISHDVF Trigger: AAACACATCATGGCTGATGATTGCCATCTCCTTTCAGGTGATGAGGTCACAGGCCTGCTTCCTTAAGAAGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000051477.13 |
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| 3UTR GCA 72 bp | CAAACAGCCAAAGCAAGAGCAACACAAAAGTTTCACTaGACACAGGAAAACCATGAGAATCCTCCCTTCCCC | + |
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Preference number: 3 (lower is better) Translates to: QTAKARATQKFH*TQENHENPPFP Trigger: GGGGAAGGGAGGATTCTCATGGTTTTCCTGTGTGCAGTGAAACTTTTGTGTTGCTCTTGCTTTGGCTGTTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| 3UTR TCA 72 bp | CACATTCCCTTTTGCAATAATTCAAACCAAAAGCTCTaGGCATCAGGCAACTCAAGCAGCAGAAAGTTAAAC | + |
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Preference number: 3 (lower is better) Translates to: HIPFCNNSNQKL*ASGNSSSRKLN Trigger: GTTTAACTTTCTGCTGCTTGAGTTGCCTGATGCTCAGAGCTTTTGGTTTGAATTATTGCAAAAGGGAATGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| CDS-3UTR CCA 90 bp | TTTCACTGCACACAGGAAAACCATGAGAATCCTCCCTTCCCCATTACACTCTACTACAGCACTTCCTTTTaGGTTGAGTTTCCGGAGGCT | + |
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Preference number: 4 (lower is better) Translates to: FHCTQENHENPPFPITLYYSTSF*VEFPEA Trigger: AGCCTCCGGAAACTCAACCCAAAAGGAAGTGCTGTA...GTAGAGTGTAATGGGGAAGGGAGGATTCTCATGGTTTTCCTGTGTGCAGTGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| CDS-3UTR TCA 90 bp | TCTAAAGTGTTGAGTAAGAAGACGCAGAGGCTTTCAAACAGGATGGTTTTATTCCACTTCCTTTTGGGTTaGGTTTCCGGAGGCTCGAGG | + |
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Preference number: 4 (lower is better) Translates to: SKVLSKKTQRLSNRMVLFHFLLG*VSGGSR Trigger: CCTCGAGCCTCCGGAAACTCAACCCAAAAGGAAGTG...GAATAAAACCATCCTGTTTGAAAGCCTCTGCGTCTTCTTACTCAACACTTTAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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| CDS-3UTR CAA 90 bp | CCATTACACTCTACTAGCAAGCCAACCCTTTTCATAGTGTGTCATGCAATTACAGCACTTCCTTTTGGGTaGAGTTTCCGGAGGCTCGAG | + |
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Preference number: 5 (lower is better) Translates to: PLHSTSKPTLFIVCHAITALPFG*SFRRLE Trigger: CTCGAGCCTCCGGAAACTCAACCCAAAAGGAAGTGC...TGTAATTGCATGACACACTATGAAAAGGGTTGGCTTGCTAGTAGAGTGTAATGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030417.10 |
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