RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDC34 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020307

Ensembl transcript IDs: ENSMUST00000020550.13, ENSMUST00000166603.2, ENSMUST00000218938.2, ENSMUST00000218964.2, ENSMUST00000219389.2, ENSMUST00000219791.2, ENSMUST00000219930.2, ENSMUST00000220328.2

Found 95 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGGAGACTGTGGTGCTGGCCTTCCTTGGGCTGGGCTGGAGTCTCTaGCTCCCCACCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCA +
Preference number: 1 (lower is better)
Translates to: EETVVLAFLGLGWSL*LPTRQSVPSLPGLS
Trigger: TGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGCACCACAGTCTCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR CCA 90 bp CACACACACCAAAAGCAGAGAGGAGACTGTGGTGCTGGCCTTCCTTaGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGGTCCC +
Preference number: 1 (lower is better)
Translates to: HTHQKQRGDCGAGLP*AGLESLAPHQAVGP
Trigger: GGGACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGCACCACAGTCTCCTCTCTGCTTTTGGTGTGTGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR TCA 90 bp AGAGGACCTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTaGGGTAGTCTGTCGCCTGAGGCCCACACGGGTCCTGCTGAGGTA +
Preference number: 1 (lower is better)
Translates to: RGPKDHGMGAHMEPR*GSLSPEAHTGPAEV
Trigger: TACCTCAGCAGGACCCGTGTGGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAGGTCCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
3UTR CCA 90 bp AGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTaGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAA +
Preference number: 1 (lower is better)
Translates to: SRSPASQACHHLKAE*GVCPAPQLFSKAEE
Trigger: TTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR GCA 90 bp AAAATTTGTAAGTTTATTTCAGGGACGTGGGTCAGGACTCTTCGGTaGCAGAGTCATCCTCTTCATCCCCAAAGCAGCTGTCGGCCTCCT +
Preference number: 1 (lower is better)
Translates to: KICKFISGTWVRTLR*QSHPLHPQSSCRPP
Trigger: AGGAGGCCGACAGCTGCTTTGGGGATGAAGAGGATGACTCTGGCACCGAAGAGTCCTGACCCACGTCCCTGAAATAAACTTACAAATTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
3UTR-3UTR CCA 90 bp CTTCGGTGCCAGAGTCATCCTCTTCATCCCCAAAGCAGCTGTCGGCCTCCTCCACGGGCGCCGGCGCCTTaGTCTTCACGCAGTACTCGG +
Preference number: 2 (lower is better)
Translates to: LRCQSHPLHPQSSCRPPPRAPAP*SSRSTR
Trigger: CCGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCG...TGGAGGAGGCCGACAGCTGCTTTGGGGATGAAGAGGATGACTCTGGCACCGAAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
3UTR-3UTR CCA 90 bp CGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTGTTTGCTTCCTTGGGCTGGGCTaGAGTCTCTGGCTCCCCACC +
Preference number: 2 (lower is better)
Translates to: RSPASQACHHLKAEWGVCFLGLG*SLWLPT
Trigger: GGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAA...GCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR CCA 90 bp CGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTGTTTGCGGTGCTGGCCTTCCTTaGGCTGGGCTGGAGTCTCTG +
Preference number: 2 (lower is better)
Translates to: RSPASQACHHLKAEWGVCGAGLP*AGLESL
Trigger: CAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGCACC...GCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR GCA 90 bp CTCCCCACCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCGTGGGGTGTTTGCCCTaGACCACAGCTCTTCTCCAA +
Preference number: 2 (lower is better)
Translates to: LPTRQSVPSLPGLSSSESVGCLP*TTALLQ
Trigger: TTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCAC...GCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGGTGGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR GCA 90 bp CCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGCTGAGTGGGGTGTTTaGCCTGCACCACAGCTCTTC +
Preference number: 2 (lower is better)
Translates to: PGSRSPASQACHHLKAEWAEWGV*PAPQLF
Trigger: GAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAGC...CCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR GCA 90 bp CGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTGTTTGCGAGAGGAGACTGTGGTaGTGGCCTTCCTTGGGCTGG +
Preference number: 2 (lower is better)
Translates to: RSPASQACHHLKAEWGVCERRLW*WPSLGW
Trigger: CCAGCCCAAGGAAGGCCAGCACCACAGTCTCCTCTC...GCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR GCA 90 bp TCCCCACCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGTGGGGTGTTTGCCCTaGACCACAGCTCTTCTCCAA +
Preference number: 2 (lower is better)
Translates to: SPPGSRSPASQACHHLKAVGCLP*TTALLQ
Trigger: TTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCAC...AGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGGTGGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR GCA 90 bp CGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTGTTTGCGCTGAGTGGGGTGTTTaGCCTGCACCACAGCTCTTC +
Preference number: 2 (lower is better)
Translates to: RSPASQACHHLKAEWGVCAEWGV*PAPQLF
Trigger: GAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAGC...GCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR CCA 90 bp CGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTGTTTGCGGATGGGAGCCCACATaGAACCTCGGTGAGGTAGTC +
Preference number: 2 (lower is better)
Translates to: RSPASQACHHLKAEWGVCGWEPT*NLGEVV
Trigger: GACTACCTCACCGAGGTTCCATGTGGGCTCCCATCC...GCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR CCA 90 bp CTGAGTGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCGGATGGGAGCCCACATaGAACCTCGGTGAGGTAGTC +
Preference number: 2 (lower is better)
Translates to: LSGVFALHHSSSPKPRKTGWEPT*NLGEVV
Trigger: GACTACCTCACCGAGGTTCCATGTGGGCTCCCATCC...GGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
3UTR-3UTR TCA 90 bp CGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTGTTTGCTCATCATCTGAAAGCTaGGTGGGGTGTTTGCCCTGC +
Preference number: 2 (lower is better)
Translates to: RSPASQACHHLKAEWGVCSSSES*VGCLPC
Trigger: GCAGGGCAAACACCCCACTCAGCTTTCAGATGATGA...GCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR CCA 72 bp GCAGAGAGGAGACTGTGGTGCTGGCCTTCCTTGGGCTaGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGG +
Preference number: 3 (lower is better)
Translates to: AERRLWCWPSLG*AGVSGSPPGSR
Trigger: CCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGCACCACAGTCTCCTCTCTGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR-3UTR CAA 90 bp ACCCATGGGGAATACGGGGTAAGAGGACCTAAGGATCATGGGATGGGAGCCCACTCGGGCGCCGGCGCCTaGGTCTTCACGCAGTACTCG +
Preference number: 3 (lower is better)
Translates to: THGEYGVRGPKDHGMGAHSGAGA*VFTQYS
Trigger: CGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCGA...GTGGGCTCCCATCCCATGATCCTTAGGTCCTCTTACCCCGTATTCCCCATGGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
3UTR TCA 72 bp AAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTaGGGTAGTCTGTCGCCTGAGGCCCACACGGGTCCT +
Preference number: 3 (lower is better)
Translates to: KDHGMGAHMEPR*GSLSPEAHTGP
Trigger: AGGACCCGTGTGGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
3UTR TCA 72 bp GCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTaGAAGCTGAGTGGGGTGTTTGCCCTGCACCACAGC +
Preference number: 3 (lower is better)
Translates to: AVGPQPPRLVII*KLSGVFALHHS
Trigger: GCTGTGGTGCAGGGCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR TCA 72 bp GTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTaGGTGGGGTGTTTGCCCTGCACCACAGCTCTTCTC +
Preference number: 3 (lower is better)
Translates to: VPSLPGLSSSES*VGCLPCTTALL
Trigger: GAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR GCA 72 bp ATTTCACACACACCAAAAGCAGAGAGGAGACTGTGGTaGTGGCCTTCCTTGGGCTGGGCTGGAGTCTCTGGC +
Preference number: 3 (lower is better)
Translates to: ISHTPKAERRLW*WPSLGWAGVSG
Trigger: GCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGCACCACAGTCTCCTCTCTGCTTTTGGTGTGTGTGAAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR CCA 72 bp CCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTaGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAA +
Preference number: 3 (lower is better)
Translates to: PASQACHHLKAE*GVCPAPQLFSK
Trigger: TTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
3UTR GCA 72 bp AAGTTTATTTCAGGGACGTGGGTCAGGACTCTTCGGTaGCAGAGTCATCCTCTTCATCCCCAAAGCAGCTGT +
Preference number: 3 (lower is better)
Translates to: KFISGTWVRTLR*QSHPLHPQSSC
Trigger: ACAGCTGCTTTGGGGATGAAGAGGATGACTCTGGCACCGAAGAGTCCTGACCCACGTCCCTGAAATAAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp GAAGAGGTCCGAGCCCTCGTCGGGCGCCGGCGCCTTGGTCTTCACGCAGTACTCGCTCCGCGTCCACCTTaGTCCCCAGGACCTGCGGAT +
Preference number: 4 (lower is better)
Translates to: EEVRALVGRRRLGLHAVLAPRPP*SPGPAD
Trigger: ATCCGCAGGTCCTGGGGACCAAGGTGGACGCGGAGC...GAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCGACGAGGGCTCGGACCTCTTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp GAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGAGGCCCACACGGGTCCGGGCGCCGGCGCCTTaGTCTTCACGCAGTACTCGG +
Preference number: 4 (lower is better)
Translates to: EPTWNLGEVVCRLRPTRVRAPAP*SSRSTR
Trigger: CCGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCG...GACCCGTGTGGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR TCA 90 bp GTGGTGCTGGCCTTCCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGGGTGCCACATCTTGGTaGGGAACCGGAAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: VVLAFLGLGWSLWLPTRQGATSW*GTGRLV
Trigger: CACCAGCCTTCCGGTTCCTCACCAAGATGTGGCACC...CTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGCACCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp TCCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGGTCCCCAGCCGAGGAACCGGAAGGCTaGTGGGGAATACGGGTAGTC +
Preference number: 4 (lower is better)
Translates to: SLGWAGVSGSPPGSRSPAEEPEG*WGIRVV
Trigger: GACTACCCGTATTCCCCACCAGCCTTCCGGTTCCTC...GGCTGGGGACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp ATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGAGGCCCCGGGCGCCGGCGCCTTaGTCTTCACGCAGTACTCGG +
Preference number: 4 (lower is better)
Translates to: MGWEPTWNLGEVVCRLRPRAPAP*SSRSTR
Trigger: CCGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCG...GGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCAT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR GCA 90 bp TCCGAGCCCTCGTCGGGCGCCGGCGCCTTGGTCTTCACGCAGTACTCGGCCAGCCGCGGTCCTTCCCCTTaGTCTCCTTCCATTTTCTGT +
Preference number: 4 (lower is better)
Translates to: SEPSSGAGALVFTQYSASRGPSP*SPSIFC
Trigger: ACAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCG...GCTGGCCGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCGACGAGGGCTCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp CCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGCGCCTTCTGCGAGCTTaGCACCAGCGGCCGGGCCAT +
Preference number: 4 (lower is better)
Translates to: PGSRSPASQACHHLKAEWRLLRA*HQRPGH
Trigger: ATGGCCCGGCCGCTGGTGCCAAGCTCGCAGAAGGCG...CCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS-3UTR CCA 90 bp TGGCCTTCCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGGTCCGAGGAACCGGAAGGCTaGTGGGGAATACGGGTAGTC +
Preference number: 4 (lower is better)
Translates to: WPSLGWAGVSGSPPGSRSEEPEG*WGIRVV
Trigger: GACTACCCGTATTCCCCACCAGCCTTCCGGTTCCTC...GGACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR GCA 90 bp TCCCCACCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTAGCAGCAGCGCCTTCTaGGAGCTTGGCACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: SPPGSRSPASQACHHLKASSSAF*ELGTSG
Trigger: GCCGCTGGTGCCAAGCTCGCAGAAGGCGCTGCTGCT...AGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGGTGGGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS-3UTR GCA 90 bp GGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGAGGCCCACATCCACCGGCTCCTCCTaGAGCCCCTTCAGTTCCAGC +
Preference number: 4 (lower is better)
Translates to: GWEPTWNLGEVVCRLRPTSTGSS*SPFSSS
Trigger: GCTGGAACTGAAGGGGCTGCAGGAGGAGCCGGTGGA...TGTGGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR GCA 90 bp CCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGGTCCCCAGCCTCGCGGTCCTTCCCCTTaGTCTCCTTCCATTTTCTGT +
Preference number: 4 (lower is better)
Translates to: PWAGLESLAPHQAVGPQPRGPSP*SPSIFC
Trigger: ACAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCG...AGGCTGGGGACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp TGGCCTTCCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGGTCCGAACCGGAAGGCTGGTaGGGAATACGGGTAGTCGAT +
Preference number: 4 (lower is better)
Translates to: WPSLGWAGVSGSPPGSRSEPEGW*GIRVVD
Trigger: ATCGACTACCCGTATTCCCCACCAGCCTTCCGGTTC...GGACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp CTTCGCCGTCCTCATAGTAGTCGTCGTAGAAGAGGTCCGAGCCCTCGTCGGGCGCCGAGGCGTCCACGTTaGCAGGCGAGAAGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: LRRPHSSRRRRGPSPRRAPRRPR*QARRCW
Trigger: CCAACACCTTCTCGCCTGCCAACGTGGACGCCTCGG...CGCCCGACGAGGGCTCGGACCTCTTCTACGACGACTACTATGAGGACGGCGAAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp GGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTGCTCCGCGTCCACCTTaGTCCCCAGGACCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: GSRSPASQACHHLKAEWGAPRPP*SPGPAS
Trigger: GGAAGCAGGTCCTGGGGACCAAGGTGGACGCGGAGC...ACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS-3UTR CCA 90 bp CCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGCTCCGCGTCCACCTTaGTCCCCAGGACCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: PGSRSPASQACHHLKAEWAPRPP*SPGPAS
Trigger: GGAAGCAGGTCCTGGGGACCAAGGTGGACGCGGAGC...CCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS-3UTR GCA 90 bp GGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGGGTTCCACCGGCTCCTCCTaGAGCCCCTTCAGTTCCAGC +
Preference number: 4 (lower is better)
Translates to: GSRSPASQACHHLKAEWGSTGSS*SPFSSS
Trigger: GCTGGAACTGAAGGGGCTGCAGGAGGAGCCGGTGGA...ACCCCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS-3UTR CCA 90 bp CTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCGCCTTCTGCGAGCTTaGCACCAGCGGCCGGGCCAT +
Preference number: 4 (lower is better)
Translates to: LRIMGWEPTWNLGEVVCRRLLRA*HQRPGH
Trigger: ATGGCCCGGCCGCTGGTGCCAAGCTCGCAGAAGGCG...GCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp CTGAGTGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCGCCTTCTGCGAGCTTaGCACCAGCGGCCGGGCCAT +
Preference number: 4 (lower is better)
Translates to: LSGVFALHHSSSPKPRKTRLLRA*HQRPGH
Trigger: ATGGCCCGGCCGCTGGTGCCAAGCTCGCAGAAGGCG...GGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp TGGCCTTCCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGGTCCCTGTGGGTCGTCAACTaGGGGATGGAGAATGGAGAT +
Preference number: 4 (lower is better)
Translates to: WPSLGWAGVSGSPPGSRSLWVVN*GMENGD
Trigger: ATCTCCATTCTCCATCCCCCAGTTGACGACCCACAG...GGACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR TCA 90 bp CCACCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGGGTGCCACATCTTGGTaGGGAACCGGAAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: PPGSRSPASQACHHLKAEGATSW*GTGRLV
Trigger: CACCAGCCTTCCGGTTCCTCACCAAGATGTGGCACC...CTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR TCA 90 bp CACTTCGCCGTCCTCATAGTAGTCGTCGTAGAAGAGGTCCGAGCCCTCGTCGGGGGTGCCACATCTTGGTaGGGAACCGGAAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: HFAVLIVVVVEEVRALVGGATSW*GTGRLV
Trigger: CACCAGCCTTCCGGTTCCTCACCAAGATGTGGCACC...CCCGACGAGGGCTCGGACCTCTTCTACGACGACTACTATGAGGACGGCGAAGTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
CDS-3UTR GCA 90 bp CTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCAGCAGCAGCGCCTTCTaGGAGCTTGGCACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: LRIMGWEPTWNLGEVVCRSSSAF*ELGTSG
Trigger: GCCGCTGGTGCCAAGCTCGCAGAAGGCGCTGCTGCT...GCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR GCA 90 bp TGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCATGGAGCAGCAGCGCCTTCTaGGAGCTTGGCACCAGCGGC +
Preference number: 4 (lower is better)
Translates to: WGVCPAPQLFSKAEENPWSSSAF*ELGTSG
Trigger: GCCGCTGGTGCCAAGCTCGCAGAAGGCGCTGCTGCT...CCATGGGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR GCA 90 bp GCTGGCCTTCCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTCGGTGATGGAGAATGGAGATaGACACGTCCCCTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: AGLPWAGLESLAPHQAVGDGEWR*TRPLSH
Trigger: ATGAGACAGGGGACGTGTGCATCTCCATTCTCCATC...ACCGACTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR TCA 90 bp GGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCATGGGGGGTGCCACATCTTGGTaGGGAACCGGAAGGCTGGTG +
Preference number: 4 (lower is better)
Translates to: GCLPCTTALLQSRGKPMGGATSW*GTGRLV
Trigger: CACCAGCCTTCCGGTTCCTCACCAAGATGTGGCACC...CCCCATGGGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCC
60% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp GAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGAGGCCCACACGGGTCCTGTGGGTCGTCAACTaGGGGATGGAGAATGGAGAT +
Preference number: 4 (lower is better)
Translates to: EPTWNLGEVVCRLRPTRVLWVVN*GMENGD
Trigger: ATCTCCATTCTCCATCCCCCAGTTGACGACCCACAG...GACCCGTGTGGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp CTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCCGAGGCGTCCACGTTaGCAGGCGAGAAGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: LRIMGWEPTWNLGEVVCRPRRPR*QARRCW
Trigger: CCAACACCTTCTCGCCTGCCAACGTGGACGCCTCGG...GCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CCA 90 bp GTGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCATGCCGAGGCGTCCACGTTaGCAGGCGAGAAGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: VGCLPCTTALLQSRGKPMPRRPR*QARRCW
Trigger: CCAACACCTTCTCGCCTGCCAACGTGGACGCCTCGG...CATGGGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR TCA 90 bp GGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCATGGGGCCAGGACCTGCTTCCTaGCATTCTGTGTGGGGTTCC +
Preference number: 4 (lower is better)
Translates to: GCLPCTTALLQSRGKPMGPGPAS*HSVWGS
Trigger: GGAACCCCACACAGAATGTCAGGAAGCAGGTCCTGG...CCCCATGGGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000219791.2
CDS-3UTR GCA 90 bp CCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGCGCGGTCCTTCCCCTTaGTCTCCTTCCATTTTCTGT +
Preference number: 4 (lower is better)
Translates to: PGSRSPASQACHHLKAEWRGPSP*SPSIFC
Trigger: ACAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCG...CCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR GCA 90 bp GGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCATGGGGTTGGTCCCCAGGACCTaGTTCCTGACATTCTGTGTG +
Preference number: 4 (lower is better)
Translates to: GCLPCTTALLQSRGKPMGLVPRT*FLTFCV
Trigger: CACACAGAATGTCAGGAAGCAGGTCCTGGGGACCAA...CCCCATGGGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp ACCCATGGGGAATACGGGGTAAGAGGACCTAAGGATCATGGGATGGGAGCCCACGAACCGGAAGGCTGGTaGGGAATACGGGTAGTCGAT +
Preference number: 4 (lower is better)
Translates to: THGEYGVRGPKDHGMGAHEPEGW*GIRVVD
Trigger: ATCGACTACCCGTATTCCCCACCAGCCTTCCGGTTC...GTGGGCTCCCATCCCATGATCCTTAGGTCCTCTTACCCCGTATTCCCCATGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp GAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGAGGCCCACACGGGTCTGTCTCATAGATGTTTaGGTGCCACATCTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: EPTWNLGEVVCRLRPTRVCLIDV*VPHLGE
Trigger: CTCACCAAGATGTGGCACCCAAACATCTATGAGACA...GACCCGTGTGGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp GCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTGGGGCTCCGCGTCCACCTTaGTCCCCAGGACCTGCTTCC +
Preference number: 4 (lower is better)
Translates to: AHTGPAEVKFVSLFQGRGAPRPP*SPGPAS
Trigger: GGAAGCAGGTCCTGGGGACCAAGGTGGACGCGGAGC...CCCACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp GAGGCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTCGGGCGCCGGCGCCTTaGTCTTCACGCAGTACTCGG +
Preference number: 4 (lower is better)
Translates to: EAHTGPAEVKFVSLFQGRRAPAP*SSRSTR
Trigger: CCGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCG...ACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
ENSMUST00000220328.2
CDS-3UTR CCA 90 bp GGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGAGGCCCACATGTCTCATAGATGTTTaGGTGCCACATCTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: GWEPTWNLGEVVCRLRPTCLIDV*VPHLGE
Trigger: CTCACCAAGATGTGGCACCCAAACATCTATGAGACA...TGTGGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp CTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGTGGGTCGTCAACTaGGGGATGGAGAATGGAGAT +
Preference number: 4 (lower is better)
Translates to: LRIMGWEPTWNLGEVVCRLWVVN*GMENGD
Trigger: ATCTCCATTCTCCATCCCCCAGTTGACGACCCACAG...GCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR GCA 90 bp ACCCATGGGGAATACGGGGTAAGAGGACCTAAGGATCATGGGATGGGAGCCCACGATGGAGAATGGAGATaGACACGTCCCCTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: THGEYGVRGPKDHGMGAHDGEWR*TRPLSH
Trigger: ATGAGACAGGGGACGTGTGCATCTCCATTCTCCATC...GTGGGCTCCCATCCCATGATCCTTAGGTCCTCTTACCCCGTATTCCCCATGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp GAGGCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTGCTCCGCGTCCACGTTaGCAGGCGAGAAGGTGTTGG +
Preference number: 4 (lower is better)
Translates to: EAHTGPAEVKFVSLFQGRAPRPR*QARRCW
Trigger: CCAACACCTTCTCGCCTGCCAACGTGGACGCGGAGC...ACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGCCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220328.2
CDS-3UTR GCA 90 bp GACCTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTGATGGAGAATGGAGATaGACACGTCCCCTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: DLRIMGWEPTWNLGEVVCDGEWR*TRPLSH
Trigger: ATGAGACAGGGGACGTGTGCATCTCCATTCTCCATC...ACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAGGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp GAGGCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTGAGGAACCGGAAGGCTaGTGGGGAATACGGGTAGTC +
Preference number: 4 (lower is better)
Translates to: EAHTGPAEVKFVSLFQGREEPEG*WGIRVV
Trigger: GACTACCCGTATTCCCCACCAGCCTTCCGGTTCCTC...ACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp ACCCATGGGGAATACGGGGTAAGAGGACCTAAGGATCATGGGATGGGAGCCCACTGTCTCATAGATGTTTaGGTGCCACATCTTGGTGAG +
Preference number: 4 (lower is better)
Translates to: THGEYGVRGPKDHGMGAHCLIDV*VPHLGE
Trigger: CTCACCAAGATGTGGCACCCAAACATCTATGAGACA...GTGGGCTCCCATCCCATGATCCTTAGGTCCTCTTACCCCGTATTCCCCATGGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CCA 90 bp GCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTGGGCTGTGGGTCGTCAACTaGGGGATGGAGAATGGAGAT +
Preference number: 4 (lower is better)
Translates to: AHTGPAEVKFVSLFQGRGLWVVN*GMENGD
Trigger: ATCTCCATTCTCCATCCCCCAGTTGACGACCCACAG...CCCACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
ENSMUST00000220328.2
CDS-3UTR CCA 90 bp GAGGCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTCTGTGGGTCGTCAACTaGGGGATGGAGAATGGAGAT +
Preference number: 4 (lower is better)
Translates to: EAHTGPAEVKFVSLFQGRLWVVN*GMENGD
Trigger: ATCTCCATTCTCCATCCCCCAGTTGACGACCCACAG...ACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
ENSMUST00000220328.2
CDS-3UTR GCA 90 bp GAGGCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTGATGGAGAATGGAGATaGACACGTCCCCTGTCTCAT +
Preference number: 4 (lower is better)
Translates to: EAHTGPAEVKFVSLFQGRDGEWR*TRPLSH
Trigger: ATGAGACAGGGGACGTGTGCATCTCCATTCTCCATC...ACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CAA 90 bp GTGGTGCTGGCCTTCCTTGGGCTGGGCTGGAGTCTCTGGCTCCCCACCAGGCAGTTTGGGTGCCACATCTaGGTGAGGAACCGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: VVLAFLGLGWSLWLPTRQFGCHI*VRNRKA
Trigger: AGCCTTCCGGTTCCTCACCAAGATGTGGCACCCAAA...CTGCCTGGTGGGGAGCCAGAGACTCCAGCCCAGCCCAAGGAAGGCCAGCACCAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp CTCCCCACCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCACCGAGGCGTCCACGTaGGCAGGCGAGAAGGTGTTG +
Preference number: 5 (lower is better)
Translates to: LPTRQSVPSLPGLSSSESTEAST*AGEKVL
Trigger: CAACACCTTCTCGCCTGCCAACGTGGACGCCTCGGT...GCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGGTGGGGAG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp CTGAGTGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCTCGGGCGCCGGCGCCTaGGTCTTCACGCAGTACTCG +
Preference number: 5 (lower is better)
Translates to: LSGVFALHHSSSPKPRKTSGAGA*VFTQYS
Trigger: CGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCGA...GGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR CAA 90 bp CTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCTCGGGCGCCGGCGCCTaGGTCTTCACGCAGTACTCG +
Preference number: 5 (lower is better)
Translates to: LRIMGWEPTWNLGEVVCRSGAGA*VFTQYS
Trigger: CGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCGA...GCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR CAA 90 bp GACCTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTTCGGGCGCCGGCGCCTaGGTCTTCACGCAGTACTCG +
Preference number: 5 (lower is better)
Translates to: DLRIMGWEPTWNLGEVVCSGAGA*VFTQYS
Trigger: CGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCGA...ACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAGGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
CDS-3UTR CAA 90 bp GTGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCATGACCGAGGCGTCCACGTaGGCAGGCGAGAAGGTGTTG +
Preference number: 5 (lower is better)
Translates to: VGCLPCTTALLQSRGKPMTEAST*AGEKVL
Trigger: CAACACCTTCTCGCCTGCCAACGTGGACGCCTCGGT...CATGGGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp ATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCCTGAGGCCCTCGCGGTCCTTCCCCTaGCTCTCCTTCCATTTTCTG +
Preference number: 5 (lower is better)
Translates to: MGWEPTWNLGEVVCRLRPSRSFP*LSFHFL
Trigger: CAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCGA...GGGCCTCAGGCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp CCAGGCAGTCGGTCCCCAGCCTCCCAGGCTTGTCATCATCTGAAAGCTGAGTGGTTTGGGTGCCACATCTaGGTGAGGAACCGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: PGSRSPASQACHHLKAEWFGCHI*VRNRKA
Trigger: AGCCTTCCGGTTCCTCACCAAGATGTGGCACCCAAA...CCACTCAGCTTTCAGATGATGACAAGCCTGGGAGGCTGGGGACCGACTGCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp GGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCCATGGGGTTTGGGTGCCACATCTaGGTGAGGAACCGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: GCLPCTTALLQSRGKPMGFGCHI*VRNRKA
Trigger: AGCCTTCCGGTTCCTCACCAAGATGTGGCACCCAAA...CCCCATGGGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CAA 90 bp GCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTGGGTCGGGCGCCGGCGCCTaGGTCTTCACGCAGTACTCG +
Preference number: 5 (lower is better)
Translates to: AHTGPAEVKFVSLFQGRGSGAGA*VFTQYS
Trigger: CGAGTACTGCGTGAAGACCAAGGCGCCGGCGCCCGA...CCCACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000219791.2
ENSMUST00000220328.2
CDS-3UTR CAA 90 bp CTGAGTGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCTTTGGGTGCCACATCTaGGTGAGGAACCGGAAGGCT +
Preference number: 5 (lower is better)
Translates to: LSGVFALHHSSSPKPRKTFGCHI*VRNRKA
Trigger: AGCCTTCCGGTTCCTCACCAAGATGTGGCACCCAAA...GGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219791.2
CDS-3UTR CAA 90 bp GACCTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTGCAGGCGAGAAGGTGTaGGGCTCATTCAGCAGCGAA +
Preference number: 5 (lower is better)
Translates to: DLRIMGWEPTWNLGEVVCAGEKV*GSFSSE
Trigger: TTCGCTGCTGAATGAGCCCAACACCTTCTCGCCTGC...ACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAGGTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp CTAAGGATCATGGGATGGGAGCCCACATGGAACCTCGGTGAGGTAGTCTGTCGCTCGCGGTCCTTCCCCTaGCTCTCCTTCCATTTTCTG +
Preference number: 5 (lower is better)
Translates to: LRIMGWEPTWNLGEVVCRSRSFP*LSFHFL
Trigger: CAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCGA...GCGACAGACTACCTCACCGAGGTTCCATGTGGGCTCCCATCCCATGATCCTTAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp CTGAGTGGGGTGTTTGCCCTGCACCACAGCTCTTCTCCAAAGCCGAGGAAAACCTCGCGGTCCTTCCCCTaGCTCTCCTTCCATTTTCTG +
Preference number: 5 (lower is better)
Translates to: LSGVFALHHSSSPKPRKTSRSFP*LSFHFL
Trigger: CAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCGA...GGTTTTCCTCGGCTTTGGAGAAGAGCTGTGGTGCAGGGCAAACACCCCACTCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
CDS-3UTR CAA 90 bp GCCCACACGGGTCCTGCTGAGGTAAAATTTGTAAGTTTATTTCAGGGACGTGGGCGCTCCGCGTCCACGTaGGCAGGCGAGAAGGTGTTG +
Preference number: 5 (lower is better)
Translates to: AHTGPAEVKFVSLFQGRGRSAST*AGEKVL
Trigger: CAACACCTTCTCGCCTGCCAACGTGGACGCGGAGCG...CCCACGTCCCTGAAATAAACTTACAAATTTTACCTCAGCAGGACCCGTGTGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220328.2
CDS CAA 90 bp GCCAGCGTAGTGGGCACCTTCACACCATCGCGCTCCGCGTCCACCTaGGTCCCCAGGACCTGCTTCCGGATGATGTCCGTGTACTCGCGG +
Preference number: 6 (lower is better)
Translates to: ASVVGTFTPSRSAST*VPRTCFRMMSVYSR
Trigger: CCGCGAGTACACGGACATCATCCGGAAGCAGGTCCTGGGGACCAAGGTGGACGCGGAGCGCGATGGTGTGAAGGTGCCCACTACGCTGGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS CCA 72 bp TGGGCACCTTCACACCATCGCGCTCCGCGTCCACCTTaGTCCCCAGGACCGGATGATGTCCGTGTACTCGCG +
Preference number: 6 (lower is better)
Translates to: WAPSHHRAPRPP*SPGPDDVRVLA
Trigger: CGCGAGTACACGGACATCATCCGGTCCTGGGGACCAAGGTGGACGCGGAGCGCGATGGTGTGAAGGTGCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218938.2
CDS CAA 72 bp GTGGGCACCTTCACACCATCGCGCTCCGCGTCCACCTaGGTCCCCAGGACCTGCTTCCGGATGATGTCCGTG +
Preference number: 6 (lower is better)
Translates to: VGTFTPSRSAST*VPRTCFRMMSV
Trigger: CACGGACATCATCCGGAAGCAGGTCCTGGGGACCAAGGTGGACGCGGAGCGCGATGGTGTGAAGGTGCCCAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS CAA 72 bp TCGCGCTCCGCGTCCACGTTGGCAGGCGAGAAGGTGTaGGGCTCATTCAGCAGCGAAATTACACTCAGGAGG +
Preference number: 6 (lower is better)
Translates to: SRSASTLAGEKV*GSFSSEITLRR
Trigger: CCTCCTGAGTGTAATTTCGCTGCTGAATGAGCCCAACACCTTCTCGCCTGCCAACGTGGACGCGGAGCGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220328.2
CDS CAA 90 bp AGGACCTGCTTCCGGATGATGTCCGTGTACTCGCGGTCCTTCCCCTaGCTCTCCTTCCATTTTCTGTACATCACCGAGGCGTCCACGTTG +
Preference number: 6 (lower is better)
Translates to: RTCFRMMSVYSRSFP*LSFHFLYITEASTL
Trigger: CAACGTGGACGCCTCGGTGATGTACAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCGAGTACACGGACATCATCCGGAAGCAGGTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS CAA 72 bp ATCACCGAGGCGTCCACGTTGGCAGGCGAGAAGGTGTaGGGCTCATTCAGCAGCGAAATTACACTCAGGAGG +
Preference number: 6 (lower is better)
Translates to: ITEASTLAGEKV*GSFSSEITLRR
Trigger: CCTCCTGAGTGTAATTTCGCTGCTGAATGAGCCCAACACCTTCTCGCCTGCCAACGTGGACGCCTCGGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219389.2
ENSMUST00000219930.2
CDS CAA 72 bp CTGCGGATGATGTCCGTGTACTCGCGGTCCTTCCCCTaGCTCTCCTTCCATTTTCTGTACATCACCGAGGCG +
Preference number: 6 (lower is better)
Translates to: LRMMSVYSRSFP*LSFHFLYITEA
Trigger: CGCCTCGGTGATGTACAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCGAGTACACGGACATCATCCGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218964.2
CDS CAA 72 bp GACCGGATGATGTCCGTGTACTCGCGGTCCTTCCCCTaGCTCTCCTTCCATTTTCTGTACATCACCGAGGCG +
Preference number: 6 (lower is better)
Translates to: DRMMSVYSRSFP*LSFHFLYITEA
Trigger: CGCCTCGGTGATGTACAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCGAGTACACGGACATCATCCGGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219930.2
CDS GCA 72 bp TCTGTGGGTCGTCAACTGGGGGATGGAGAATGGAGATaGACACGTCCCCTGTCTCATAGATGTTTGGGTGCC +
Preference number: 6 (lower is better)
Translates to: SVGRQLGDGEWR*TRPLSHRCLGA
Trigger: GGCACCCAAACATCTATGAGACAGGGGACGTGTGCATCTCCATTCTCCATCCCCCAGTTGACGACCCACAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219389.2
ENSMUST00000219791.2
ENSMUST00000219930.2
CDS CAA 72 bp TTCCGGATGATGTCCGTGTACTCGCGGTCCTTCCCCTaGCTCTCCTTCCATTTTCTGTACATCACCGAGGCG +
Preference number: 6 (lower is better)
Translates to: FRMMSVYSRSFP*LSFHFLYITEA
Trigger: CGCCTCGGTGATGTACAGAAAATGGAAGGAGAGCAAGGGGAAGGACCGCGAGTACACGGACATCATCCGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
CDS CAA 90 bp TTTCTGTACATCACCGAGGCGTCCACGTTGGCAGGCGAGAAGGTGTaGGGCTCATTCAGCAGCGAAATTACACTCAGGAGGATGGTTCTG +
Preference number: 6 (lower is better)
Translates to: FLYITEASTLAGEKV*GSFSSEITLRRMVL
Trigger: CAGAACCATCCTCCTGAGTGTAATTTCGCTGCTGAATGAGCCCAACACCTTCTCGCCTGCCAACGTGGACGCCTCGGTGATGTACAGAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000020550.13
ENSMUST00000166603.2
ENSMUST00000218964.2
ENSMUST00000219389.2
ENSMUST00000219930.2