RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CDC25C (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044201

Ensembl transcript IDs: ENSMUST00000060710.9, ENSMUST00000237620.2

Found 82 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACTATTGTGGGCTCGCACCCTTCACCAGGAGGGCAATCTGTCCCTaGAGCTGCCGCTCCCCTTCCTGGGCCTTGCTCTGGCTTCGCCAG +
Preference number: 1 (lower is better)
Translates to: HYCGLAPFTRRAICP*SCRSPSWALLWLRQ
Trigger: CTGGCGAAGCCAGAGCAAGGCCCAGGAAGGGGAGCGGCAGCTGCAGGGACAGATTGCCCTCCTGGTGAAGGGTGCGAGCCCACAATAGTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CCA 90 bp GATCACACTCTGGAACTTTCCAGACAGCAAAGCAGCCACTGTGTCTaGGCTGATATACTTCAGATCCGGGTGTTTCCCTGGCACCGTTGG +
Preference number: 1 (lower is better)
Translates to: DHTLELSRQQSSHCV*ADILQIRVFPWHRW
Trigger: CCAACGGTGCCAGGGAAACACCCGGATCTGAAGTATATCAGCCCAGACACAGTGGCTGCTTTGCTGTCTGGAAAGTTCCAGAGTGTGATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR TCA 90 bp AGAGGAACAACAGGCTTCCTCAGAAAGAACTCATGCAGTTCCTTCTaGCTGTGCAGGTTTAAGGCTCCCAGGATGTGGCCTCCCAGGTAC +
Preference number: 1 (lower is better)
Translates to: RGTTGFLRKNSCSSF*LCRFKAPRMWPPRY
Trigger: GTACCTGGGAGGCCACATCCTGGGAGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGAGTTCTTTCTGAGGAAGCCTGTTGTTCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CCA 90 bp CGTTCATGTCACAGAGTGGGACCATCTTCCTTAGACTTAAGCCCTTaGCGTCCTGGTCTCCCAGGGAACACTCCATTGGGTCTTCTGAAA +
Preference number: 1 (lower is better)
Translates to: RSCHRVGPSSLDLSP*RPGLPGNTPLGLLK
Trigger: TTTCAGAAGACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCTTAAGTCTAAGGAAGATGGTCCCACTCTGTGACATGAACG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CCA 90 bp CACCAATCAGAAGCTCTGAGCCAGACTCTTCCTCCTCCATCTGAATaGCGTTCATGTCACAGAGTGGGACCATCTTCCTTAGACTTAAGC +
Preference number: 1 (lower is better)
Translates to: HQSEALSQTLPPPSE*RSCHRVGPSSLDLS
Trigger: GCTTAAGTCTAAGGAAGATGGTCCCACTCTGTGACATGAACGCCATTCAGATGGAGGAGGAAGAGTCTGGCTCAGAGCTTCTGATTGGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR TCA 90 bp CCAGGATGTGGCCTCCCAGGTACTCATACGGATAGCGGCAATCAATaGTATAAAACCTCTCGATCACACTCTGGAACTTTCCAGACAGCA +
Preference number: 1 (lower is better)
Translates to: PGCGLPGTHTDSGNQ*YKTSRSHSGTFQTA
Trigger: TGCTGTCTGGAAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTGGGAGGCCACATCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR GCA 90 bp GGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTaGAGACATAATCACGGGATTAGCGACATGGAAGATGACTCCTTC +
Preference number: 1 (lower is better)
Translates to: GRKAFIYSLPGSAHV*RHNHGISDMEDDSF
Trigger: GAAGGAGTCATCTTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
3UTR TCA 90 bp ATTGGGTCTTCTGAAATCCTTTCTTGGTCTTCTAGCTTTACATTTTaGCTCAGCTTAGGAACCGTAGTAATGGGACTGCCCAGATGCTTC +
Preference number: 1 (lower is better)
Translates to: IGSSEILSWSSSFTF*LSLGTVVMGLPRCF
Trigger: GAAGCATCTGGGCAGTCCCATTACTACGGTTCCTAAGCTGAGTCAAAATGTAAAGCTAGAAGACCAAGAAAGGATTTCAGAAGACCCAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CAA 90 bp GCGTTCATGTCACAGAGTGGGACCATCTTCCTTAGACTTAAGCCCTaGGCGTCCTGGTCTCCCAGGGAACACTCCATTGGGTCTTCTGAA +
Preference number: 2 (lower is better)
Translates to: AFMSQSGTIFLRLKP*ASWSPREHSIGSSE
Trigger: TTCAGAAGACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCTTAAGTCTAAGGAAGATGGTCCCACTCTGTGACATGAACGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR-3UTR TCA 90 bp GCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACCAATCAGAAGCTCTaGGCCAGACTCTTCCTCCTC +
Preference number: 2 (lower is better)
Translates to: ARTKGIYLQPAWLCPCLQTNQKL*ARLFLL
Trigger: GAGGAGGAAGAGTCTGGCTCAGAGCTTCTGATTGGT...CTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR-3UTR GCA 90 bp CCGGGTGTTTCCCTGGCACCGTTGGCAGCACACACACCTTTGAGAAATCACCAAACTCAAAGATCCTCCTaGCTTTGCCTCCTTAGTGCT +
Preference number: 2 (lower is better)
Translates to: PGVSLAPLAAHTPLRNHQTQRSS*LCLLSA
Trigger: AGCACTAAGGAGGCAAAGGCAGGAGGATCTTTGAGT...TTGGTGATTTCTCAAAGGTGTGTGTGCTGCCAACGGTGCCAGGGAAACACCCGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR-3UTR CCA 90 bp GCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGTATTTACAGCCTGCCTaGCTCTGCCCATGTTTGCAG +
Preference number: 2 (lower is better)
Translates to: ARTKGIYLQPAWLCPCLQYLQPA*LCPCLQ
Trigger: CTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATA...CTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
3UTR-3UTR TCA 90 bp GCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGCAGCACACACACCTTTaGGAAATCACCAATCAGAAG +
Preference number: 2 (lower is better)
Translates to: ARTKGIYLQPAWLCPCLQQHTHL*EITNQK
Trigger: CTTCTGATTGGTGATTTCTCAAAGGTGTGTGTGCTG...CTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR-3UTR GCA 90 bp GCCTCCCAGGTACTCATACGGATAGCGGCAATCAATGATATAAAACCTCTCGATAGATCCTCCTGCCTTTaGCTCCTTAGTGCTAGGACG +
Preference number: 2 (lower is better)
Translates to: ASQVLIRIAAINDIKPLDRSSCL*LLSART
Trigger: CGTCCTAGCACTAAGGAGGCAAAGGCAGGAGGATCT...ATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTGGGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR-3UTR GCA 90 bp TTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTATGGGACTGCCCAGATaGTTCATTTCCAGCTCACAC +
Preference number: 2 (lower is better)
Translates to: LVLGRKAFIYSLPGSAHVMGLPR*FISSSH
Trigger: GTGTGAGCTGGAAATGAAGCATCTGGGCAGTCCCAT...AACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CAA 90 bp TTAGACTTAAGCCCTTGGCGTCCTGGTCTCCCAGGGAACACTCCATaGGGTCTTCTGAAATCCTTTCTTGGTCTTCTAGCTTTACATTTT +
Preference number: 2 (lower is better)
Translates to: LDLSPWRPGLPGNTP*GLLKSFLGLLALHF
Trigger: AAAATGTAAAGCTAGAAGACCAAGAAAGGATTTCAGAAGACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCTTAAGTCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR-3UTR TCA 90 bp GCCTCCCAGGTACTCATACGGATAGCGGCAATCAATGATATAAAACCTCTCGATCTCCATTGGGTCTTCTaGAATCCTTTCTTGGTCTTC +
Preference number: 2 (lower is better)
Translates to: ASQVLIRIAAINDIKPLDLHWVF*NPFLVF
Trigger: GAAGACCAAGAAAGGATTTCAGAAGACCCAATGGAG...ATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTGGGAGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR-3UTR CCA 90 bp AACACAATGATGACTCTTTTCTGGATATCCAGAGGAACAACAGGCTTCCTCAGAAGCAGCCACTGTGTCTaGGCTGATATACTTCAGATC +
Preference number: 2 (lower is better)
Translates to: NTMMTLFWISRGTTGFLRSSHCV*ADILQI
Trigger: GATCTGAAGTATATCAGCCCAGACACAGTGGCTGCT...TCTGAGGAAGCCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CCA 72 bp CACAGAGTGGGACCATCTTCCTTAGACTTAAGCCCTTaGCGTCCTGGTCTCCCAGGGAACACTCCATTGGGT +
Preference number: 3 (lower is better)
Translates to: HRVGPSSLDLSP*RPGLPGNTPLG
Trigger: ACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCTTAAGTCTAAGGAAGATGGTCCCACTCTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CCA 72 bp CTGGAACTTTCCAGACAGCAAAGCAGCCACTGTGTCTaGGCTGATATACTTCAGATCCGGGTGTTTCCCTGG +
Preference number: 3 (lower is better)
Translates to: LELSRQQSSHCV*ADILQIRVFPW
Trigger: CCAGGGAAACACCCGGATCTGAAGTATATCAGCCCAGACACAGTGGCTGCTTTGCTGTCTGGAAAGTTCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR TCA 72 bp ACAGGCTTCCTCAGAAAGAACTCATGCAGTTCCTTCTaGCTGTGCAGGTTTAAGGCTCCCAGGATGTGGCCT +
Preference number: 3 (lower is better)
Translates to: TGFLRKNSCSSF*LCRFKAPRMWP
Trigger: AGGCCACATCCTGGGAGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGAGTTCTTTCTGAGGAAGCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR GCA 72 bp TGTAGACCAGGCTGGCCTCAAACTCAAAGATCCTCCTaGCTTTGCCTCCTTAGTGCTAGGACGAAAGGCATT +
Preference number: 3 (lower is better)
Translates to: CRPGWPQTQRSS*LCLLSARTKGI
Trigger: AATGCCTTTCGTCCTAGCACTAAGGAGGCAAAGGCAGGAGGATCTTTGAGTTTGAGGCCAGCCTGGTCTACA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
3UTR CCA 72 bp GAAGCTCTGAGCCAGACTCTTCCTCCTCCATCTGAATaGCGTTCATGTCACAGAGTGGGACCATCTTCCTTA +
Preference number: 3 (lower is better)
Translates to: EALSQTLPPPSE*RSCHRVGPSSL
Trigger: TAAGGAAGATGGTCCCACTCTGTGACATGAACGCCATTCAGATGGAGGAGGAAGAGTCTGGCTCAGAGCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR CCA 72 bp CTGGTGGTCCTGGTGAAGCATGGGACAGTAGCTCTGTaGGTCACACAGCTCCATATACTCTGGAAAGAAATC +
Preference number: 3 (lower is better)
Translates to: LVVLVKHGTVAL*VTQLHILWKEI
Trigger: GATTTCTTTCCAGAGTATATGGAGCTGTGTGACCCACAGAGCTACTGTCCCATGCTTCACCAGGACCACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR GCA 72 bp CTCAGCTTAGGAACCGTAGTAATGGGACTGCCCAGATaGTTCATTTCCAGCTCACACAGAGGAGAAGTCAGA +
Preference number: 3 (lower is better)
Translates to: LSLGTVVMGLPR*FISSSHRGEVR
Trigger: TCTGACTTCTCCTCTGTGTGAGCTGGAAATGAAGCATCTGGGCAGTCCCATTACTACGGTTCCTAAGCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR GCA 72 bp CCAGGCTGGCCTCAAACTCAAAGATCCTCCTGCCTTTaGCTCCTTAGTGCTAGGACGAAAGGCATTTATTTA +
Preference number: 3 (lower is better)
Translates to: PGWPQTQRSSCL*LLSARTKGIYL
Trigger: TAAATAAATGCCTTTCGTCCTAGCACTAAGGAGGCAAAGGCAGGAGGATCTTTGAGTTTGAGGCCAGCCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
3UTR TCA 72 bp GGCCTCCCAGGTACTCATACGGATAGCGGCAATCAATaGTATAAAACCTCTCGATCACACTCTGGAACTTTC +
Preference number: 3 (lower is better)
Translates to: GLPGTHTDSGNQ*YKTSRSHSGTF
Trigger: GAAAGTTCCAGAGTGTGATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTGGGAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR GCA 72 bp GCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTaGAGACATAATCACGGGATTAGCGACATGGAAGAT +
Preference number: 3 (lower is better)
Translates to: AFIYSLPGSAHV*RHNHGISDMED
Trigger: ATCTTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
3UTR-3UTR CAA 90 bp CAGGTACTCATACGGATAGCGGCAATCAATGATATAAAACCTCTCGATCACACTCCAGGGAACACTCCATaGGGTCTTCTGAAATCCTTT +
Preference number: 3 (lower is better)
Translates to: QVLIRIAAINDIKPLDHTPGNTP*GLLKSF
Trigger: AAAGGATTTCAGAAGACCCAATGGAGTGTTCCCTGG...AGTGTGATCGAGAGGTTTTATATCATTGATTGCCGCTATCCGTATGAGTACCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
3UTR TCA 72 bp TCTGAAATCCTTTCTTGGTCTTCTAGCTTTACATTTTaGCTCAGCTTAGGAACCGTAGTAATGGGACTGCCC +
Preference number: 3 (lower is better)
Translates to: SEILSWSSSFTF*LSLGTVVMGLP
Trigger: GGGCAGTCCCATTACTACGGTTCCTAAGCTGAGTCAAAATGTAAAGCTAGAAGACCAAGAAAGGATTTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR CCA 90 bp TGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGGAAGAAGCCCTTGGCGTCCTaGTCTCCCAGGGAACACTCC +
Preference number: 4 (lower is better)
Translates to: CLALPMFADIITGLATWKKPLAS*SPREHS
Trigger: GGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCTT...CTTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CCA 90 bp AGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGATCCGGGTGTTTCCCTaGCACCGTTGGCAGCACACA +
Preference number: 4 (lower is better)
Translates to: SLPGSAHVCRHNHGISDMIRVFP*HRWQHT
Trigger: TGTGTGCTGCCAACGGTGCCAGGGAAACACCCGGAT...CATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CCA 90 bp TTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCCGCTCCCCTTCCTaGGCCTTGCTCTGGCTTCGC +
Preference number: 4 (lower is better)
Translates to: LVLGRKAFIYSLPGSAHVCRSPS*ALLWLR
Trigger: GCGAAGCCAGAGCAAGGCCCAGGAAGGGGAGCGGCA...AACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
3UTR CAA 72 bp TCACAGAGTGGGACCATCTTCCTTAGACTTAAGCCCTaGGCGTCCTGGTCTCCCAGGGAACACTCCATTGGG +
Preference number: 4 (lower is better)
Translates to: SQSGTIFLRLKP*ASWSPREHSIG
Trigger: CCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCTTAAGTCTAAGGAAGATGGTCCCACTCTGTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR TCA 90 bp ATTGTGGGCTCGCACCCTTCACCAGGAGGGCAATCTGTCCCTGCAGCTGCCGCTTTCATAAGGTCCTGGTaGAAATCCTTGCCAGTTAAC +
Preference number: 4 (lower is better)
Translates to: IVGSHPSPGGQSVPAAAAFIRSW*KSLPVN
Trigger: GTTAACTGGCAAGGATTTTCACCAGGACCTTATGAA...AGCGGCAGCTGCAGGGACAGATTGCCCTCCTGGTGAAGGGTGCGAGCCCACAAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR TCA 90 bp AGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGACCAATCAGAAGCTCTaGGCCAGACTCTTCCTCCTC +
Preference number: 4 (lower is better)
Translates to: SLPGSAHVCRHNHGISDMTNQKL*ARLFLL
Trigger: GAGGAGGAAGAGTCTGGCTCAGAGCTTCTGATTGGT...CATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR GCA 90 bp GAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCAGGGCAATCTGTCCCTaGAGCTGCCGCTCCCCTTCC +
Preference number: 4 (lower is better)
Translates to: ERHLFTACLALPMFADIIRAICP*SCRSPS
Trigger: GGAAGGGGAGCGGCAGCTGCAGGGACAGATTGCCCT...GATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
3UTR CAA 72 bp AGCCCTTGGCGTCCTGGTCTCCCAGGGAACACTCCATaGGGTCTTCTGAAATCCTTTCTTGGTCTTCTAGCT +
Preference number: 4 (lower is better)
Translates to: SPWRPGLPGNTP*GLLKSFLGLLA
Trigger: AGCTAGAAGACCAAGAAAGGATTTCAGAAGACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR GCA 90 bp CCTCCTGCCTTTGCCTCCTTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCCTTGGGGTCCTAGGTaGCTCCCATTCCAATGCCTT +
Preference number: 4 (lower is better)
Translates to: PPAFASLVLGRKAFIYSLPWGPR*LPFQCL
Trigger: AAGGCATTGGAATGGGAGGCACCTAGGACCCCAAGG...CAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAAGGAGGCAAAGGCAGGAGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CCA 90 bp ATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCAAGGCTCCCAGGATGTaGCCTCCCAGGTACTCATAC +
Preference number: 4 (lower is better)
Translates to: IYSLPGSAHVCRHNHGISKAPRM*PPRYSY
Trigger: GTATGAGTACCTGGGAGGCCACATCCTGGGAGCCTT...GCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CCA 90 bp CTTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTGGTCCTGGTGAAGCATaGGACAGTAGCTCTGTGGGT +
Preference number: 4 (lower is better)
Translates to: LSARTKGIYLQPAWLCPCGPGEA*DSSSVG
Trigger: ACCCACAGAGCTACTGTCCCATGCTTCACCAGGACC...ACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR GCA 90 bp AGCCCTTGGCGTCCTGGTCTCCCAGGGAACACTCCATTGGGTCTTCTGAAATCCGAGAAGCAGGAACGCTaGATTTTCTTTATGTGCAGA +
Preference number: 4 (lower is better)
Translates to: SPWRPGLPGNTPLGLLKSEKQER*IFFMCR
Trigger: TCTGCACATAAAGAAAATGCAGCGTTCCTGCTTCTC...GGATTTCAGAAGACCCAATGGAGTGTTCCCTGGGAGACCAGGACGCCAAGGGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR CCA 90 bp ACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACAAGCAGCCACTGTGTCTaGGCTGATATACTTCAGATC +
Preference number: 4 (lower is better)
Translates to: TACLALPMFADIITGLATSSHCV*ADILQI
Trigger: GATCTGAAGTATATCAGCCCAGACACAGTGGCTGCT...TGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR TCA 90 bp AGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGCTCCATTGGGTCTTCTaGAATCCTTTCTTGGTCTTC +
Preference number: 4 (lower is better)
Translates to: SLPGSAHVCRHNHGISDMLHWVF*NPFLVF
Trigger: GAAGACCAAGAAAGGATTTCAGAAGACCCAATGGAG...CATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR TCA 90 bp GCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGTCATGCAGTTCCTTCTaGCTGTGCAGGTTTAAGGCT +
Preference number: 4 (lower is better)
Translates to: ARTKGIYLQPAWLCPCLQSCSSF*LCRFKA
Trigger: AGCCTTAAACCTGCACAGTCAGAAGGAACTGCATGA...CTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR TCA 90 bp CCTCCTGCCTTTGCCTCCTTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCTCTGTAGCCCCCTTTaGGGATATATAGCTCAGGGT +
Preference number: 4 (lower is better)
Translates to: PPAFASLVLGRKAFIYSLLCSPL*GYIAQG
Trigger: ACCCTGAGCTATATATCCTCAAAGGGGGCTACAGAG...CAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAAGGAGGCAAAGGCAGGAGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR TCA 90 bp CTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGGAACCTAAAACTGGGTGCTaGAACAAAACTTCCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LPGSAHVCRHNHGISDMEPKTGC*NKTSLF
Trigger: GAAGAGGGAAGTTTTGTTTCAGCACCCAGTTTTAGG...TTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR TCA 90 bp TGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGGAAGCAGCACACACACCTTTaGGAAATCACCAATCAGAAG +
Preference number: 4 (lower is better)
Translates to: CLALPMFADIITGLATWKQHTHL*EITNQK
Trigger: CTTCTGATTGGTGATTTCTCAAAGGTGTGTGTGCTG...CTTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR GCA 90 bp TGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGGAAGAGATGTGCTACGCTTTaGAATCTTCTTTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: CLALPMFADIITGLATWKRCATL*NLLSVA
Trigger: GGCCACAGAAAGAAGATTGCAAAGCGTAGCACATCT...CTTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR GCA 90 bp CAGAGCCCTGTCTTTTTCTCTCAGAGAACGGCACATTCGAGGGCCTCTCTCGGATGCATTTTCTTTATGTaGAGATGTGCTACGCTTTGC +
Preference number: 4 (lower is better)
Translates to: QSPVFFSQRTAHSRASLGCIFFM*RCATLC
Trigger: GCAAAGCGTAGCACATCTGCACATAAAGAAAATGCA...TCCGAGAGAGGCCCTCGAATGTGCCGTTCTCTGAGAGAAAAAGACAGGGCTCTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR CCA 90 bp ACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACACAGCTCCATATACTCTaGAAAGAAATCTCTGTAGCC +
Preference number: 4 (lower is better)
Translates to: TACLALPMFADIITGLATQLHIL*KEISVA
Trigger: GGCTACAGAGATTTCTTTCCAGAGTATATGGAGCTG...TGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CCA 90 bp TTCACAGAGGAACACAATGATGACTCTTTTCTGGATATCCAGAGGAACAACAGGCCCGCGTCAATCAGCTaGAGGGAGAGAAGCAGGAAC +
Preference number: 4 (lower is better)
Translates to: FTEEHNDDSFLDIQRNNRPASIS*RERSRN
Trigger: GTTCCTGCTTCTCTCCCTCCAGCTGATTGACGCGGG...CCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTTCCTCTGTGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR GCA 90 bp ATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCAGATGTGCTACGCTTTaGAATCTTCTTTCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: IYSLPGSAHVCRHNHGISRCATL*NLLSVA
Trigger: GGCCACAGAAAGAAGATTGCAAAGCGTAGCACATCT...GCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR GCA 90 bp GAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCATGGGACTGCCCAGATaGTTCATTTCCAGCTCACAC +
Preference number: 4 (lower is better)
Translates to: ERHLFTACLALPMFADIIMGLPR*FISSSH
Trigger: GTGTGAGCTGGAAATGAAGCATCTGGGCAGTCCCAT...GATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR TCA 90 bp GAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCCCTAAAACTGGGTGCTaGAACAAAACTTCCCTCTTC +
Preference number: 4 (lower is better)
Translates to: ERHLFTACLALPMFADIIPKTGC*NKTSLF
Trigger: GAAGAGGGAAGTTTTGTTTCAGCACCCAGTTTTAGG...GATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR TCA 90 bp TTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTTCATAAGGTCCTGGTaGAAATCCTTGCCAGTTAAC +
Preference number: 4 (lower is better)
Translates to: LVLGRKAFIYSLPGSAHVFIRSW*KSLPVN
Trigger: GTTAACTGGCAAGGATTTTCACCAGGACCTTATGAA...AACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR CCA 90 bp GAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCCTCTCGATCACACTCTaGAACTTTCCAGACAGCAAA +
Preference number: 4 (lower is better)
Translates to: ERHLFTACLALPMFADIILSITL*NFPDSK
Trigger: TTTGCTGTCTGGAAAGTTCCAGAGTGTGATCGAGAG...GATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR GCA 90 bp GAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCCCTGGTGAAAATCCTTaGCAGTTAACTGTCTATCCA +
Preference number: 4 (lower is better)
Translates to: ERHLFTACLALPMFADIIPGENP*QLTVYP
Trigger: TGGATAGACAGTTAACTGGCAAGGATTTTCACCAGG...GATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR GCA 90 bp AAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACCCTGGTGAAAATCCTTaGCAGTTAACTGTCTATCCA +
Preference number: 4 (lower is better)
Translates to: KAFIYSLPGSAHVCRHNHPGENP*QLTVYP
Trigger: TGGATAGACAGTTAACTGGCAAGGATTTTCACCAGG...GTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR CCA 90 bp CTTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTATGATGACTCTTTTCTaGATATCCAGAGGAACAACA +
Preference number: 4 (lower is better)
Translates to: LSARTKGIYLQPAWLCPCMMTLF*ISRGTT
Trigger: TGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCAT...ACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR TCA 90 bp GAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCTCTAGCTTTACATTTTaGCTCAGCTTAGGAACCGTA +
Preference number: 4 (lower is better)
Translates to: ERHLFTACLALPMFADIISSFTF*LSLGTV
Trigger: TACGGTTCCTAAGCTGAGTCAAAATGTAAAGCTAGA...GATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR GCA 90 bp CTTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTATATTTTCTTTATGTaGAGATGTGCTACGCTTTGC +
Preference number: 4 (lower is better)
Translates to: LSARTKGIYLQPAWLCPCYIFFM*RCATLC
Trigger: GCAAAGCGTAGCACATCTGCACATAAAGAAAATATA...ACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CCA 90 bp TTCACAGAGGAACACAATGATGACTCTTTTCTGGATATCCAGAGGAACAACAGGCCAATGCCTTTAAACTaGTGTTTATCTGCACAAGAA +
Preference number: 4 (lower is better)
Translates to: FTEEHNDDSFLDIQRNNRPMPLN*CLSAQE
Trigger: TTCTTGTGCAGATAAACACCAGTTTAAAGGCATTGG...CCTGTTGTTCCTCTGGATATCCAGAAAAGAGTCATCATTGTGTTCCTCTGTGAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR CAA 90 bp GCTAGGACGAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGTCCCCTTCCTGGGCCTaGCTCTGGCTTCGCCAGCTC +
Preference number: 5 (lower is better)
Translates to: ARTKGIYLQPAWLCPCLQSPSWA*LWLRQL
Trigger: GAGCTGGCGAAGCCAGAGCAAGGCCCAGGAAGGGGA...CTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTCGTCCTAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CAA 90 bp CTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGGAAGTTTCCCTGGCACCGTaGGCAGCACACACACCTTTG +
Preference number: 5 (lower is better)
Translates to: LPGSAHVCRHNHGISDMEVSLAP*AAHTPL
Trigger: CAAAGGTGTGTGTGCTGCCAACGGTGCCAGGGAAAC...TTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS-3UTR CAA 90 bp TGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGGAAGCAGATGTGCTACGCTTaGCAATCTTCTTTCTGTGGC +
Preference number: 5 (lower is better)
Translates to: CLALPMFADIITGLATWKQMCYA*QSSFCG
Trigger: GCCACAGAAAGAAGATTGCAAAGCGTAGCACATCTG...CTTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR CAA 90 bp CTGCCTGGCTCTGCCCATGTTTGCAGACATAATCACGGGATTAGCGACATGGAACCAGGGAACACTCCATaGGGTCTTCTGAAATCCTTT +
Preference number: 5 (lower is better)
Translates to: LPGSAHVCRHNHGISDMEPGNTP*GLLKSF
Trigger: AAAGGATTTCAGAAGACCCAATGGAGTGTTCCCTGG...TTCCATGTCGCTAATCCCGTGATTATGTCTGCAAACATGGGCAGAGCCAGGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS GCA 90 bp GATTCGAAAGGTCAAGGCAACATTTTGGGGTTCCTCCCGACAGAATaGTTAGGTTTGCCGAGTCGTGGAGTTTGTCTTTCGGAGATTCAG +
Preference number: 5 (lower is better)
Translates to: DSKGQGNILGFLPTE*LGLPSRGVCLSEIQ
Trigger: CTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGGAGGAACCCCAAAATGTTGCCTTGACCTTTCGAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR CAA 90 bp CCTCCTGCCTTTGCCTCCTTAGTGCTAGGACGAAAGGCATTTATTTACAGCCTGGAATCCAAGGAACCATaGTCCTCAAGGTCAGCAGAA +
Preference number: 5 (lower is better)
Translates to: PPAFASLVLGRKAFIYSLESKEP*SSRSAE
Trigger: TTCTGCTGACCTTGAGGACAATGGTTCCTTGGATTC...CAGGCTGTAAATAAATGCCTTTCGTCCTAGCACTAAGGAGGCAAAGGCAGGAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS-3UTR CAA 90 bp ACCGTTGGCAGCACACACACCTTTGAGAAATCACCAATCAGAAGCTCTGAGCCAGAATCCAAGGAACCATaGTCCTCAAGGTCAGCAGAA +
Preference number: 5 (lower is better)
Translates to: TVGSTHTFEKSPIRSSEPESKEP*SSRSAE
Trigger: TTCTGCTGACCTTGAGGACAATGGTTCCTTGGATTC...TGGCTCAGAGCTTCTGATTGGTGATTTCTCAAAGGTGTGTGTGCTGCCAACGGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS CCA 90 bp TTAAACTGGTGTTTATCTGCACAAGAAGGACCCGCGTCAATCAGCTaGAGGGAGAGAAGCAGGAACGCTGCATTTTCTTTATGTGCAGAT +
Preference number: 5 (lower is better)
Translates to: LNWCLSAQEGPASIS*RERSRNAAFSLCAD
Trigger: ATCTGCACATAAAGAAAATGCAGCGTTCCTGCTTCTCTCCCTCCAGCTGATTGACGCGGGTCCTTCTTGTGCAGATAAACACCAGTTTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS-3UTR CAA 90 bp GAAAGGCATTTATTTACAGCCTGCCTGGCTCTGCCCATGTTTGCAGACATAATCGCAGCACACACACCTTaGAGAAATCACCAATCAGAA +
Preference number: 5 (lower is better)
Translates to: ERHLFTACLALPMFADIIAAHTP*RNHQSE
Trigger: TTCTGATTGGTGATTTCTCAAAGGTGTGTGTGCTGC...GATTATGTCTGCAAACATGGGCAGAGCCAGGCAGGCTGTAAATAAATGCCTTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060710.9
CDS GCA 90 bp AAGCAGGAACGCTGCATTTTCTTTATGTGCAGATGTGCTACGCTTTaGAATCTTCTTTCTGTGGCCATGATTCATAGCATTCGGAGTACT +
Preference number: 5 (lower is better)
Translates to: KQERCIFFMCRCATL*NLLSVAMIHSIRST
Trigger: AGTACTCCGAATGCTATGAATCATGGCCACAGAAAGAAGATTGCAAAGCGTAGCACATCTGCACATAAAGAAAATGCAGCGTTCCTGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS TCA 90 bp TTATGTGCAGATGTGCTACGCTTTGCAATCTTCTTTCTGTGGCCATaGTTCATAGCATTCGGAGTACTACAAAGAAGCTGTACTGGGATA +
Preference number: 5 (lower is better)
Translates to: LCADVLRFAIFFLWP*FIAFGVLQRSCTGI
Trigger: TATCCCAGTACAGCTTCTTTGTAGTACTCCGAATGCTATGAATCATGGCCACAGAAAGAAGATTGCAAAGCGTAGCACATCTGCACATAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS GCA 72 bp GGTCAAGGCAACATTTTGGGGTTCCTCCCGACAGAATaGTTAGGTTTGCCGAGTCGTGGAGTTTGTCTTTCG +
Preference number: 6 (lower is better)
Translates to: GQGNILGFLPTE*LGLPSRGVCLS
Trigger: CGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGGAGGAACCCCAAAATGTTGCCTTGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS CAA 72 bp CCCGACAGAATGCTTAGGTTTGCCGAGTCGTGGAGTTaGTCTTTCGGAGATTCAGGGAAATCTGAACGGATG +
Preference number: 6 (lower is better)
Translates to: PDRMLRFAESWS*SFGDSGKSERM
Trigger: CATCCGTTCAGATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS CCA 72 bp GTTCCTCCCGACAGAATGCTTAGGTTTGCCGAGTCGTaGAGTTTGTCTTTCGGAGATTCAGGGAAATCTGAA +
Preference number: 6 (lower is better)
Translates to: VPPDRMLRFAES*SLSFGDSGKSE
Trigger: TTCAGATTTCCCTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGGAGGAAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS CCA 72 bp TGTTTATCTGCACAAGAAGGACCCGCGTCAATCAGCTaGAGGGAGAGAAGCAGGAACGCTGCATTTTCTTTA +
Preference number: 6 (lower is better)
Translates to: CLSAQEGPASIS*RERSRNAAFSL
Trigger: TAAAGAAAATGCAGCGTTCCTGCTTCTCTCCCTCCAGCTGATTGACGCGGGTCCTTCTTGTGCAGATAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS CAA 72 bp AACATTTTGGGGTTCCTCCCGACAGAATGCTTAGGTTaGCCGAGTCGTGGAGTTTGTCTTTCGGAGATTCAG +
Preference number: 6 (lower is better)
Translates to: NILGFLPTECLG*PSRGVCLSEIQ
Trigger: CTGAATCTCCGAAAGACAAACTCCACGACTCGGCAAACCTAAGCATTCTGTCGGGAGGAACCCCAAAATGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS GCA 72 bp GAGGGAGAGAAGCAGGAACGCTGCATTTTCTTTATGTaGAGATGTGCTACGCTTTGCAATCTTCTTTCTGTG +
Preference number: 6 (lower is better)
Translates to: EGEKQERCIFFM*RCATLCNLLSV
Trigger: CACAGAAAGAAGATTGCAAAGCGTAGCACATCTGCACATAAAGAAAATGCAGCGTTCCTGCTTCTCTCCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000237620.2
CDS TCA 72 bp GATGTGCTACGCTTTGCAATCTTCTTTCTGTGGCCATaGTTCATAGCATTCGGAGTACTACAAAGAAGCTGT +
Preference number: 6 (lower is better)
Translates to: DVLRFAIFFLWP*FIAFGVLQRSC
Trigger: ACAGCTTCTTTGTAGTACTCCGAATGCTATGAATCATGGCCACAGAAAGAAGATTGCAAAGCGTAGCACATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2
CDS CCA 72 bp ATTCATAGCATTCGGAGTACTACAAAGAAGCTGTACTaGGATACCTTTCATAAGGTCCTGGTGAAAATCCTT +
Preference number: 6 (lower is better)
Translates to: IHSIRSTTKKLY*DTFHKVLVKIL
Trigger: AAGGATTTTCACCAGGACCTTATGAAAGGTATCCCAGTACAGCTTCTTTGTAGTACTCCGAATGCTATGAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000060710.9
ENSMUST00000237620.2