Pregenerated sensors for CDC20B (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078926Ensembl transcript IDs: ENSMUST00000109244.9, ENSMUST00000180543.8, ENSMUST00000181117.8, ENSMUST00000181568.8, ENSMUST00000181741.2
Found 67 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | GTCTCTAGTAGTCACCAGTACACCACAGTGAGTTCTGGTGATTTCCTGCAGATGCCTGAGGTCACCATATaGCCTCTGACTCTGTTCCGT | + |
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Preference number: 2 (lower is better) Translates to: VSSSHQYTTVSSGDFLQMPEVTI*PLTLFR Trigger: ACGGAACAGAGTCAGAGGTCATATGGTGACCTCAGG...CATCTGCAGGAAATCACCAGAACTCACTGTGGTGTACTGGTGACTACTAGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180543.8 ENSMUST00000181741.2 |
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| 3UTR-3UTR TCA 90 bp | TATGTCTCTAGTAGTCACCAGTACACCACAGTGAGTTCTGGTGATTTCCTGCAGCCTGAGGTCACCATATaGCCTCTGACTCTGTTCCGT | + |
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Preference number: 2 (lower is better) Translates to: YVSSSHQYTTVSSGDFLQPEVTI*PLTLFR Trigger: ACGGAACAGAGTCAGAGGTCATATGGTGACCTCAGG...CTGCAGGAAATCACCAGAACTCACTGTGGTGTACTGGTGACTACTAGAGACATA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000180543.8 ENSMUST00000181741.2 |
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| CDS-3UTR TCA 90 bp | GTCTCTAGTAGTCACCAGTACACCACAGTGAGTTCTGGTGATTTCCTGCAGATGTGGCGAGCACCCGCATaGTGTTCTCCCACAACATCT | + |
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Preference number: 4 (lower is better) Translates to: VSSSHQYTTVSSGDFLQMWRAPA*CSPTTS Trigger: AGATGTTGTGGGAGAACATCATGCGGGTGCTCGCCA...CATCTGCAGGAAATCACCAGAACTCACTGTGGTGTACTGGTGACTACTAGAGAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181741.2 |
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| CDS-3UTR TCA 90 bp | TTCTATGTCTCTAGTAGTCACCAGTACACCACAGTGAGTTCTGGTGATTTCCTGTGGCGAGCACCCGCATaGTGTTCTCCTTTAAAAAGC | + |
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Preference number: 4 (lower is better) Translates to: FYVSSSHQYTTVSSGDFLWRAPA*CSPLKS Trigger: GCTTTTTAAAGGAGAACATCATGCGGGTGCTCGCCA...CAGGAAATCACCAGAACTCACTGTGGTGTACTGGTGACTACTAGAGACATAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000180543.8 |
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| CDS GCA 90 bp | AGGCATCCGTCCTTCACGCCTCCTCCCACGGCAAGGACCTCAGATTaGCAGGGACACCACTCCATGGCCTTAACCGCCGTGGACTGGGGT | + |
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Preference number: 5 (lower is better) Translates to: RHPSFTPPPTARTSD*QGHHSMALTAVDWG Trigger: ACCCCAGTCCACGGCGGTTAAGGCCATGGAGTGGTGTCCCTGGCAATCTGAGGTCCTTGCCGTGGGAGGAGGCGTGAAGGACGGATGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 |
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| CDS TCA 90 bp | AAGAGCTTTCCGGGTCCCTGGCTGGGCTTAGCTGCCATCTGGTGGTaGTGGGGCTGCTGGCCACAGGAATCTCCGCAGACAGCCTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: KSFPGPWLGLAAIWW*WGCWPQESPQTASS Trigger: TGAAGAGGCTGTCTGCGGAGATTCCTGTGGCCAGCAGCCCCATCACCACCAGATGGCAGCTAAGCCCAGCCAGGGACCCGGAAAGCTCTT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS GCA 90 bp | TCTTCCACAGAGGAAGAGCTTTCCGGGTCCCTGGCTGGGCTTAGCTaGCATCTGGTGGTGATGGGGCTGCTGGCCACAGGAATCTCCGCA | + |
|
Preference number: 5 (lower is better) Translates to: SSTEEELSGSLAGLS*HLVVMGLLATGISA Trigger: TGCGGAGATTCCTGTGGCCAGCAGCCCCATCACCACCAGATGGCAGCTAAGCCCAGCCAGGGACCCGGAAAGCTCTTCCTCTGTGGAAGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS GCA 90 bp | ACCGAAGAACCCACCGGACCTGAACAGCGTGGGGCAGGTCCACAGTaGCACATCATTCTTGGGTGCACCTTGGCCGGTCGCAATCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: TEEPTGPEQRGAGPQ*HIILGCTLAGRNLL Trigger: AAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTGGGTTCTTCGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181568.8 |
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| CDS GCA 90 bp | GCCTTAACCGCCGTGGACTGGGGTATGACTTTCAGTGGCAGGCCCTaGACACCAGCGCCAGGATCGTGGGGCCATATTGTCAGTAATCCA | + |
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Preference number: 5 (lower is better) Translates to: ALTAVDWGMTFSGRP*TPAPGSWGHIVSNP Trigger: TGGATTACTGACAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGAAAGTCATACCCCAGTCCACGGCGGTTAAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 |
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| CDS GCA 90 bp | TCTGTCTCTGTGACCGGACCTGAACAGCGTGGGGCAGGTCCACAGTaGCACATCATTCTTGGGTGCACCTTGGCCGGTCGCAATCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: SVSVTGPEQRGAGPQ*HIILGCTLAGRNLL Trigger: AAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTCACAGAGACAGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181117.8 |
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| CDS TCA 90 bp | TGGCCACAGGAATCTCCGCAGACAGCCTCTTCACGAAGTTGCTCTTaGAGCTGGAGTATGTCACGGCGACCGAGTCCAACTCCTTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: WPQESPQTASSRSCS*SWSMSRRPSPTPWG Trigger: CCCCCAAGGAGTTGGACTCGGTCGCCGTGACATACTCCAGCTTCAAGAGCAACTTCGTGAAGAGGCTGTCTGCGGAGATTCCTGTGGCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 90 bp | ACAAATGCAGCACTCTGTCTCTGTGACCGAAGAACCCACCGGACCTaGACAGCGTGGGGCAGGTCCACAGTGCCACATCATTCTTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: TNAALCLCDRRTHRT*TAWGRSTVPHHSWV Trigger: CACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTGGGTTCTTCGGTCACAGAGACAGAGTGCTGCATTTGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181568.8 |
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| CDS TCA 90 bp | AACCTTGATTTCGCTGCTGCTTCATGCCGTTGGCGAGCACCCGCATaGTGTTCTCCTTTAAAAAGCCCGCGGGGCGGCAATCAAAGCGGG | + |
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Preference number: 5 (lower is better) Translates to: NLDFAAASCRWRAPA*CSPLKSPRGGNQSG Trigger: CCCGCTTTGATTGCCGCCCCGCGGGCTTTTTAAAGGAGAACATCATGCGGGTGCTCGCCAACGGCATGAAGCAGCAGCGAAATCAAGGTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180543.8 |
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| CDS TCA 90 bp | CTGGACTCAGTGACAAATGCAGCACTCTGTCTCTGTGACCGGACCTaGACAGCGTGGGGCAGGTCCACAGTGCCACATCATTCTTGGGTG | + |
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Preference number: 5 (lower is better) Translates to: LDSVTNAALCLCDRT*TAWGRSTVPHHSWV Trigger: CACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTCACAGAGACAGAGTGCTGCATTTGTCACTGAGTCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181117.8 |
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| CDS GCA 90 bp | ATCTTAACCGCCGTGGACTGGGGTATGACTTTCAGTGGCAGGCCCTaGACACCAGCGCCAGGATCGTGGGGCCATATTGTCAGTAATCCA | + |
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Preference number: 5 (lower is better) Translates to: ILTAVDWGMTFSGRP*TPAPGSWGHIVSNP Trigger: TGGATTACTGACAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGAAAGTCATACCCCAGTCCACGGCGGTTAAGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000181568.8 |
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| CDS CCA 90 bp | AGCGTGGGGCAGGTCCACAGTGCCACATCATTCTTGGGTGCACCTTaGCCGGTCGCAATCTCCTTTGTCTTAGGTAGCCAGATGAGGGAA | + |
|
Preference number: 5 (lower is better) Translates to: SVGQVHSATSFLGAP*PVAISFVLGSQMRE Trigger: TTCCCTCATCTGGCTACCTAAGACAAAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 90 bp | CCCACTGCTGAGGGTGCAGTGGTTCCAGCTCAGGGCTCCAACGACTaGCAAGTGACCATGCAGGTTTCTCAGCTGCTTCTTAGTGATTGC | + |
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Preference number: 5 (lower is better) Translates to: PTAEGAVVPAQGSND*QVTMQVSQLLLSDC Trigger: GCAATCACTAAGAAGCAGCTGAGAAACCTGCATGGTCACTTGTCAGTCGTTGGAGCCCTGAGCTGGAACCACTGCACCCTCAGCAGTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 90 bp | CTGAGGGTGCAGTGGTTCCAGCTCAGGGCTCCAACGACTGACAAGTaGCCATGCAGGTTTCTCAGCTGCTTCTTAGTGATTGCATCCCAT | + |
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Preference number: 5 (lower is better) Translates to: LRVQWFQLRAPTTDK*PCRFLSCFLVIASH Trigger: ATGGGATGCAATCACTAAGAAGCAGCTGAGAAACCTGCATGGTCACTTGTCAGTCGTTGGAGCCCTGAGCTGGAACCACTGCACCCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 90 bp | GGTATGACTTTCAGTGGCAGGCCCTGCACACCAGCGCCAGGATCGTaGGGCCATATTGTCAGTAATCCATCATTACACCCACTGGAAAGA | + |
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Preference number: 5 (lower is better) Translates to: GMTFSGRPCTPAPGS*GHIVSNPSLHPLER Trigger: TCTTTCCAGTGGGTGTAATGATGGATTACTGACAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGAAAGTCATACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 90 bp | ACACACCGGGACTCCTCACAGAGATGCATCTTCCCATCGATTTGCTaGGCTCCCTTCTGGGTTGAAAATGGCTGGTTTAGGCATCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: THRDSSQRCIFPSIC*APFWVENGWFRHLW Trigger: CCAGAGATGCCTAAACCAGCCATTTTCAACCCAGAAGGGAGCTCAGCAAATCGATGGGAAGATGCATCTCTGTGAGGAGTCCCGGTGTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS GCA 90 bp | GTGCTTGGAGTCTGGATGTTCTTCCCAGTATTTATATCCAAAACATaGAGGCATCCGTCCTTCACGCCTCCTCCCACGGCAAGGACCTCA | + |
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Preference number: 5 (lower is better) Translates to: VLGVWMFFPVFISKT*RHPSFTPPPTARTS Trigger: TGAGGTCCTTGCCGTGGGAGGAGGCGTGAAGGACGGATGCCTGCATGTTTTGGATATAAATACTGGGAAGAACATCCAGACTCCAAGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 |
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| CDS GCA 90 bp | GCCATATTGTCAGTAATCCATCATTACACCCACTGGAAAGAAGCCTaGCGTCGGGTGACCATTTTAGAGAACACACAGCCTCCTTGTGGT | + |
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Preference number: 5 (lower is better) Translates to: AILSVIHHYTHWKEA*RRVTILENTQPPCG Trigger: ACCACAAGGAGGCTGTGTGTTCTCTAAAATGGTCACCCGACGGCAGGCTTCTTTCCAGTGGGTGTAATGATGGATTACTGACAATATGGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 90 bp | GAGATAGTAGTCATTTCGAAGACCAGTGAGATGAATCTTCACCTCTaGTTGGCATGTGGAATGGTAGACACCGCTGAATCTCCTAAGATA | + |
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Preference number: 5 (lower is better) Translates to: EIVVISKTSEMNLHL*LACGMVDTAESPKI Trigger: TATCTTAGGAGATTCAGCGGTGTCTACCATTCCACATGCCAACCAGAGGTGAAGATTCATCTCACTGGTCTTCGAAATGACTACTATCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | CCGGGTCCCTGGCTGGGCTTAGCTGCCATCTGGTGGTaGTGGGGCTGCTGGCCACAGGAATCTCCGCAGACA | + |
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Preference number: 6 (lower is better) Translates to: PGPWLGLAAIWW*WGCWPQESPQT Trigger: TGTCTGCGGAGATTCCTGTGGCCAGCAGCCCCATCACCACCAGATGGCAGCTAAGCCCAGCCAGGGACCCGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS GCA 72 bp | CCCACCGGACCTGAACAGCGTGGGGCAGGTCCACAGTaGCACATCATTCTTGGGTGCACCTTGGCCGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: PTGPEQRGAGPQ*HIILGCTLAGR Trigger: GCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181568.8 |
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| CDS CAA 90 bp | CAGGCATCCGTCCTTCACGCCTCCTCCCACGGCAAGGACCTCAGATaGCCAGGGACACCACTCCATGGCCTTAACCGCCGTGGACTGGGG | + |
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Preference number: 6 (lower is better) Translates to: QASVLHASSHGKDLR*PGTPLHGLNRRGLG Trigger: CCCCAGTCCACGGCGGTTAAGGCCATGGAGTGGTGTCCCTGGCAATCTGAGGTCCTTGCCGTGGGAGGAGGCGTGAAGGACGGATGCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 |
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| CDS GCA 72 bp | GAGGAAGAGCTTTCCGGGTCCCTGGCTGGGCTTAGCTaGCATCTGGTGGTGATGGGGCTGCTGGCCACAGGA | + |
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Preference number: 6 (lower is better) Translates to: EEELSGSLAGLS*HLVVMGLLATG Trigger: TCCTGTGGCCAGCAGCCCCATCACCACCAGATGGCAGCTAAGCCCAGCCAGGGACCCGGAAAGCTCTTCCTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS GCA 72 bp | GTGACCGGACCTGAACAGCGTGGGGCAGGTCCACAGTaGCACATCATTCTTGGGTGCACCTTGGCCGGTCGC | + |
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Preference number: 6 (lower is better) Translates to: VTGPEQRGAGPQ*HIILGCTLAGR Trigger: GCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181117.8 |
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| CDS TCA 72 bp | CATGGTGGTGGACACGCCCCAATCTGGACCCACTGCTaGGGGTGCAGTGGTTCCAGCTCAGGGCTCCAACGA | + |
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Preference number: 6 (lower is better) Translates to: HGGGHAPIWTHC*GCSGSSSGLQR Trigger: TCGTTGGAGCCCTGAGCTGGAACCACTGCACCCTCAGCAGTGGGTCCAGATTGGGGCGTGTCCACCACCATG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS GCA 72 bp | GCCGTGGACTGGGGTATGACTTTCAGTGGCAGGCCCTaGACACCAGCGCCAGGATCGTGGGGCCATATTGTC | + |
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Preference number: 6 (lower is better) Translates to: AVDWGMTFSGRP*TPAPGSWGHIV Trigger: GACAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGAAAGTCATACCCCAGTCCACGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | CCAACACGATGCTGGGCCACCCGAACATCATGGTGGTaGACACGCCCCAATCTGGACCCACTGCTGAGGGTG | + |
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Preference number: 6 (lower is better) Translates to: PTRCWATRTSWW*TRPNLDPLLRV Trigger: CACCCTCAGCAGTGGGTCCAGATTGGGGCGTGTCCACCACCATGATGTTCGGGTGGCCCAGCATCGTGTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | GTCCTTCACGCCTCCTCCCACGGCAAGGACCTCAGATaGCCAGGGACACCACTCCATGGCCTTAACCGCCGT | + |
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Preference number: 6 (lower is better) Translates to: VLHASSHGKDLR*PGTPLHGLNRR Trigger: ACGGCGGTTAAGGCCATGGAGTGGTGTCCCTGGCAATCTGAGGTCCTTGCCGTGGGAGGAGGCGTGAAGGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 |
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| CDS CCA 72 bp | GTTCCAACACGATGCTGGGCCACCCGAACATCATGGTaGTGGACACGCCCCAATCTGGACCCACTGCTGAGG | + |
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Preference number: 6 (lower is better) Translates to: VPTRCWATRTSW*WTRPNLDPLLR Trigger: CCTCAGCAGTGGGTCCAGATTGGGGCGTGTCCACCACCATGATGTTCGGGTGGCCCAGCATCGTGTTGGAAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | CAGGGACACCACTCCATGGCCTTAACCGCCGTGGACTaGGGTATGACTTTCAGTGGCAGGCCCTGCACACCA | + |
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Preference number: 6 (lower is better) Translates to: QGHHSMALTAVD*GMTFSGRPCTP Trigger: TGGTGTGCAGGGCCTGCCACTGAAAGTCATACCCCAGTCCACGGCGGTTAAGGCCATGGAGTGGTGTCCCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 |
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| CDS TCA 72 bp | GCACTCTGTCTCTGTGACCGAAGAACCCACCGGACCTaGACAGCGTGGGGCAGGTCCACAGTGCCACATCAT | + |
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Preference number: 6 (lower is better) Translates to: ALCLCDRRTHRT*TAWGRSTVPHH Trigger: ATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTGGGTTCTTCGGTCACAGAGACAGAGTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181568.8 |
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| CDS CAA 90 bp | GGGCTGCTGGCCACAGGAATCTCCGCAGACAGCCTCTTCACGAAGTaGCTCTTGAAGCTGGAGTATGTCACGGCGACCGAGTCCAACTCC | + |
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Preference number: 6 (lower is better) Translates to: GLLATGISADSLFTK*LLKLEYVTATESNS Trigger: GGAGTTGGACTCGGTCGCCGTGACATACTCCAGCTTCAAGAGCAACTTCGTGAAGAGGCTGTCTGCGGAGATTCCTGTGGCCAGCAGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 90 bp | CCGGACCTGAACAGCGTGGGGCAGGTCCACAGTGCCACATCATTCTaGGGTGCACCTTGGCCGGTCGCAATCTCCTTTGTCTTAGGTAGC | + |
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Preference number: 6 (lower is better) Translates to: PDLNSVGQVHSATSF*GAPWPVAISFVLGS Trigger: GCTACCTAAGACAAAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 90 bp | CTGGCCACAGGAATCTCCGCAGACAGCCTCTTCACGAAGTTGCTCTaGAAGCTGGAGTATGTCACGGCGACCGAGTCCAACTCCTTGGGG | + |
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Preference number: 6 (lower is better) Translates to: LATGISADSLFTKLL*KLEYVTATESNSLG Trigger: CCCCAAGGAGTTGGACTCGGTCGCCGTGACATACTCCAGCTTCAAGAGCAACTTCGTGAAGAGGCTGTCTGCGGAGATTCCTGTGGCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | TTCGCTGCTGCTTCATGCCGTTGGCGAGCACCCGCATaGTGTTCTCCTTTAAAAAGCCCGCGGGGCGGCAAT | + |
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Preference number: 6 (lower is better) Translates to: FAAASCRWRAPA*CSPLKSPRGGN Trigger: ATTGCCGCCCCGCGGGCTTTTTAAAGGAGAACATCATGCGGGTGCTCGCCAACGGCATGAAGCAGCAGCGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000180543.8 |
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| CDS GCA 72 bp | CGTGGGGCAGGTCCACAGTGCCACATCATTCTTGGGTaGACCTTGGCCGGTCGCAATCTCCTTTGTCTTAGG | + |
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Preference number: 6 (lower is better) Translates to: RGAGPQCHIILG*TLAGRNLLCLR Trigger: CCTAAGACAAAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | ACAGCGTGGGGCAGGTCCACAGTGCCACATCATTCTTaGGTGCACCTTGGCCGGTCGCAATCTCCTTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: TAWGRSTVPHHS*VHLGRSQSPLS Trigger: AGACAAAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | AACAGCGTGGGGCAGGTCCACAGTGCCACATCATTCTaGGGTGCACCTTGGCCGGTCGCAATCTCCTTTGTC | + |
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Preference number: 6 (lower is better) Translates to: NSVGQVHSATSF*GAPWPVAISFV Trigger: GACAAAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTGCCCCACGCTGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 90 bp | TCAGTGGCAGGCCCTGCACACCAGCGCCAGGATCGTGGGGCCATATaGTCAGTAATCCATCATTACACCCACTGGAAAGAAGCCTGCCGT | + |
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Preference number: 6 (lower is better) Translates to: SVAGPAHQRQDRGAI*SVIHHYTHWKEACR Trigger: ACGGCAGGCTTCTTTCCAGTGGGTGTAATGATGGATTACTGACAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | TCTGGACTCAGTGACAAATGCAGCACTCTGTCTCTGTaGCCGAAGAACCCACCGGACCTGAACAGCGTGGGG | + |
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Preference number: 6 (lower is better) Translates to: SGLSDKCSTLSL*PKNPPDLNSVG Trigger: CCCCACGCTGTTCAGGTCCGGTGGGTTCTTCGGTCACAGAGACAGAGTGCTGCATTTGTCACTGAGTCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000109244.9 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | GTGACAAATGCAGCACTCTGTCTCTGTGACCGGACCTaGACAGCGTGGGGCAGGTCCACAGTGCCACATCAT | + |
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Preference number: 6 (lower is better) Translates to: VTNAALCLCDRT*TAWGRSTVPHH Trigger: ATGATGTGGCACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTCACAGAGACAGAGTGCTGCATTTGTCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181117.8 |
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| CDS TCA 72 bp | TCTGGACTCAGTGACAAATGCAGCACTCTGTCTCTGTaGCCGGACCTGAACAGCGTGGGGCAGGTCCACAGT | + |
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Preference number: 6 (lower is better) Translates to: SGLSDKCSTLSL*PDLNSVGQVHS Trigger: ACTGTGGACCTGCCCCACGCTGTTCAGGTCCGGTCACAGAGACAGAGTGCTGCATTTGTCACTGAGTCCAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000181117.8 |
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| CDS CAA 72 bp | GCCACAGGAATCTCCGCAGACAGCCTCTTCACGAAGTaGCTCTTGAAGCTGGAGTATGTCACGGCGACCGAG | + |
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Preference number: 6 (lower is better) Translates to: ATGISADSLFTK*LLKLEYVTATE Trigger: CTCGGTCGCCGTGACATACTCCAGCTTCAAGAGCAACTTCGTGAAGAGGCTGTCTGCGGAGATTCCTGTGGC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | TTCAGTGGCAGGCCCTGCACACCAGCGCCAGGATCGTaGGGCCATATTGTCAGTAATCCATCATTACACCCA | + |
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Preference number: 6 (lower is better) Translates to: FSGRPCTPAPGS*GHIVSNPSLHP Trigger: TGGGTGTAATGATGGATTACTGACAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCCTGCCACTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | CAGGTCCACAGTGCCACATCATTCTTGGGTGCACCTTaGCCGGTCGCAATCTCCTTTGTCTTAGGTAGCCAG | + |
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Preference number: 6 (lower is better) Translates to: QVHSATSFLGAP*PVAISFVLGSQ Trigger: CTGGCTACCTAAGACAAAGGAGATTGCGACCGGCCAAGGTGCACCCAAGAATGATGTGGCACTGTGGACCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | AGCCAGATGAGGGAACAAATCTTAACCGCCGTGGACTaGGGTATGACTTTCAGTGGCAGGCCCTGCACACCA | + |
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Preference number: 6 (lower is better) Translates to: SQMREQILTAVD*GMTFSGRPCTP Trigger: TGGTGTGCAGGGCCTGCCACTGAAAGTCATACCCCAGTCCACGGCGGTTAAGATTTGTTCCCTCATCTGGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000181568.8 |
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| CDS CAA 72 bp | GGAATCTCCGCAGACAGCCTCTTCACGAAGTTGCTCTaGAAGCTGGAGTATGTCACGGCGACCGAGTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: GISADSLFTKLL*KLEYVTATESN Trigger: GTTGGACTCGGTCGCCGTGACATACTCCAGCTTCAAGAGCAACTTCGTGAAGAGGCTGTCTGCGGAGATTCC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | GAATCTCCGCAGACAGCCTCTTCACGAAGTTGCTCTTaGAGCTGGAGTATGTCACGGCGACCGAGTCCAACT | + |
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Preference number: 6 (lower is better) Translates to: ESPQTASSRSCS*SWSMSRRPSPT Trigger: AGTTGGACTCGGTCGCCGTGACATACTCCAGCTTCAAGAGCAACTTCGTGAAGAGGCTGTCTGCGGAGATTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | GCTGTCCCATCTGCCGCAGCAGAAAATAGGCGTGTCTaGTCTGGACTCAGTGACAAATGCAGCACTCTGTCT | + |
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Preference number: 6 (lower is better) Translates to: AVPSAAAENRRV*SGLSDKCSTLS Trigger: AGACAGAGTGCTGCATTTGTCACTGAGTCCAGACCAGACACGCCTATTTTCTGCTGCGGCAGATGGGACAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | GGCCCTGCACACCAGCGCCAGGATCGTGGGGCCATATaGTCAGTAATCCATCATTACACCCACTGGAAAGAA | + |
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Preference number: 6 (lower is better) Translates to: GPAHQRQDRGAI*SVIHHYTHWKE Trigger: TTCTTTCCAGTGGGTGTAATGATGGATTACTGACAATATGGCCCCACGATCCTGGCGCTGGTGTGCAGGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | AGAATTCATCTCTGGCTCCAAATCTACAGCCTGTCCTaGCACACCGGGACTCCTCACAGAGATGCATCTTCC | + |
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Preference number: 6 (lower is better) Translates to: RIHLWLQIYSLS*HTGTPHRDASS Trigger: GGAAGATGCATCTCTGTGAGGAGTCCCGGTGTGTCAGGACAGGCTGTAGATTTGGAGCCAGAGATGAATTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | CAGTGGTTCCAGCTCAGGGCTCCAACGACTGACAAGTaGCCATGCAGGTTTCTCAGCTGCTTCTTAGTGATT | + |
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Preference number: 6 (lower is better) Translates to: QWFQLRAPTTDK*PCRFLSCFLVI Trigger: AATCACTAAGAAGCAGCTGAGAAACCTGCATGGTCACTTGTCAGTCGTTGGAGCCCTGAGCTGGAACCACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS TCA 72 bp | GACTCCTCACAGAGATGCATCTTCCCATCGATTTGCTaGGCTCCCTTCTGGGTTGAAAATGGCTGGTTTAGG | + |
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Preference number: 6 (lower is better) Translates to: DSSQRCIFPSIC*APFWVENGWFR Trigger: CCTAAACCAGCCATTTTCAACCCAGAAGGGAGCTCAGCAAATCGATGGGAAGATGCATCTCTGTGAGGAGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS GCA 72 bp | TTTCCTTCCAGCCTCTGTCCCCTGCAAGAGGTGTCTTaGAAAAACGGAGAGTGGAGTTATTCACTTCAGAAC | + |
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Preference number: 6 (lower is better) Translates to: FPSSLCPLQEVS*KNGEWSYSLQN Trigger: GTTCTGAAGTGAATAACTCCACTCTCCGTTTTTGCAAGACACCTCTTGCAGGGGACAGAGGCTGGAAGGAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | GTCATTTCGAAGACCAGTGAGATGAATCTTCACCTCTaGTTGGCATGTGGAATGGTAGACACCGCTGAATCT | + |
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Preference number: 6 (lower is better) Translates to: VISKTSEMNLHL*LACGMVDTAES Trigger: AGATTCAGCGGTGTCTACCATTCCACATGCCAACCAGAGGTGAAGATTCATCTCACTGGTCTTCGAAATGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | ATTTCGAAGACCAGTGAGATGAATCTTCACCTCTGGTaGGCATGTGGAATGGTAGACACCGCTGAATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: ISKTSEMNLHLW*ACGMVDTAESP Trigger: AGGAGATTCAGCGGTGTCTACCATTCCACATGCCAACCAGAGGTGAAGATTCATCTCACTGGTCTTCGAAAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | GTATACAGAGGTTCCGAGGGCTACAGCAACGAGATTTaGAGAACTCCAGTCCAGGGTATTGAGATAGTAGTC | + |
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Preference number: 6 (lower is better) Translates to: VYRGSEGYSNEI*RTPVQGIEIVV Trigger: GACTACTATCTCAATACCCTGGACTGGAGTTCTCAAAATCTCGTTGCTGTAGCCCTCGGAACCTCTGTATAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | CTTCCTTTAGAGAGGGTTTTGGGTGAATTTTTGTTGTaGGATCGTAGAGTTAGGGTGTCTGCTGCAGGTGTT | + |
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Preference number: 6 (lower is better) Translates to: LPLERVLGEFLL*DRRVRVSAAGV Trigger: AACACCTGCAGCAGACACCCTAACTCTACGATCCCACAACAAAAATTCACCCAAAACCCTCTCTAAAGGAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | GAACTTCCTTTAGAGAGGGTTTTGGGTGAATTTTTGTaGTGGGATCGTAGAGTTAGGGTGTCTGCTGCAGGT | + |
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Preference number: 6 (lower is better) Translates to: ELPLERVLGEFL*WDRRVRVSAAG Trigger: ACCTGCAGCAGACACCCTAACTCTACGATCCCACAACAAAAATTCACCCAAAACCCTCTCTAAAGGAAGTTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | TCAGAACTTCCTTTAGAGAGGGTTTTGGGTGAATTTTaGTTGTGGGATCGTAGAGTTAGGGTGTCTGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: SELPLERVLGEF*LWDRRVRVSAA Trigger: TGCAGCAGACACCCTAACTCTACGATCCCACAACAAAAATTCACCCAAAACCCTCTCTAAAGGAAGTTCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 90 bp | ATAGTAGTCATTTCGAAGACCAGTGAGATGAATCTTCACCTCTGGTaGGCATGTGGAATGGTAGACACCGCTGAATCTCCTAAGATAGAA | + |
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Preference number: 6 (lower is better) Translates to: IVVISKTSEMNLHLW*ACGMVDTAESPKIE Trigger: TTCTATCTTAGGAGATTCAGCGGTGTCTACCATTCCACATGCCAACCAGAGGTGAAGATTCATCTCACTGGTCTTCGAAATGACTACTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CCA 72 bp | CAACAGACGCTTAAGTCTATATTTTCAATCCAACTGTaGTTTTGCCCATTCCAGATGTATACAGAGGTTCCG | + |
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Preference number: 6 (lower is better) Translates to: QQTLKSIFSIQL*FCPFQMYTEVP Trigger: CGGAACCTCTGTATACATCTGGAATGGGCAAAACCACAGTTGGATTGAAAATATAGACTTAAGCGTCTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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| CDS CAA 72 bp | GAGTTATTCACTTCAGAACTTCCTTTAGAGAGGGTTTaGGGTGAATTTTTGTTGTGGGATCGTAGAGTTAGG | + |
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Preference number: 6 (lower is better) Translates to: ELFTSELPLERV*GEFLLWDRRVR Trigger: CCTAACTCTACGATCCCACAACAAAAATTCACCCAAAACCCTCTCTAAAGGAAGTTCTGAAGTGAATAACTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000109244.9 ENSMUST00000181117.8 ENSMUST00000181568.8 |
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