Pregenerated sensors for CDC20 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000006398Ensembl transcript IDs: ENSMUST00000006565.13, ENSMUST00000183942.2
Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR CAA 90 bp | GTAAGACCCAGGACCCGTGCTGTGTGTCCTTTGAGCTCAGCCACCTaGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGGGCA | + |
Preference number: 2 (lower is better) Translates to: VRPRTRAVCPLSSAT*AMVGYFQITSWFWA Trigger: TGCCCAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGTCTTAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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3UTR CAA 72 bp | AGGACCCGTGCTGTGTGTCCTTTGAGCTCAGCCACCTaGGCCATGGTTGGATACTTCCAAATAACCAGCTGG | + |
Preference number: 4 (lower is better) Translates to: RTRAVCPLSSAT*AMVGYFQITSW Trigger: CCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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3UTR CAA 72 bp | CTCATTGTAAGACCCAGGACCCGTGCTGTGTGTCCTTaGAGCTCAGCCACCTTGGCCATGGTTGGATACTTC | + |
Preference number: 4 (lower is better) Translates to: LIVRPRTRAVCP*SSATLAMVGYF Trigger: GAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGTCTTACAATGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR GCA 90 bp | GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGATCTGCAAGTCTTCCTaGTGGAGCCAGGCGTGGCTT | + |
Preference number: 4 (lower is better) Translates to: ELSHLGHGWILPNNQLVLICKSS*WSQAWL Trigger: AAGCCACGCCTGGCTCCAGCAGGAAGACTTGCAGAT...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR CCA 90 bp | GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGGTTCTGGTAGCCTTCTaGGGCATTCTGAGGTTTGCC | + |
Preference number: 4 (lower is better) Translates to: ELSHLGHGWILPNNQLVLVLVAF*GILRFA Trigger: GGCAAACCTCAGAATGCCCCAGAAGGCTACCAGAAC...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR CCA 90 bp | GTGTCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGTGCAAGTCTTCCTGCTaGAGCCAGGCGTGGCTTTCT | + |
Preference number: 4 (lower is better) Translates to: VSFELSHLGHGWILPNNQCKSSC*SQAWLS Trigger: AGAAAGCCACGCCTGGCTCCAGCAGGAAGACTTGCA...CTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR CCA 90 bp | GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGGGACCTCAGCATTGCTaGTGCCTACAGCTAGGTAGT | + |
Preference number: 4 (lower is better) Translates to: ELSHLGHGWILPNNQLVLGPQHC*CLQLGS Trigger: ACTACCTAGCTGTAGGCACCAGCAATGCTGAGGTCC...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR CCA 90 bp | GTGTGTCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCTGCACATCCCAGAGCTaGACCTCAGCATTGCTGGTG | + |
Preference number: 4 (lower is better) Translates to: VCPLSSATLAMVGYFQITCTSQS*TSALLV Trigger: CACCAGCAATGCTGAGGTCCAGCTCTGGGATGTGCA...GGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR CCA 90 bp | GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGCACCATGCCACAGCCTaGATAGGATATAGCTGTTCC | + |
Preference number: 4 (lower is better) Translates to: ELSHLGHGWILPNNQLVLHHATA*IGYSCS Trigger: GGAACAGCTATATCCTATCCAGGCTGTGGCATGGTG...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR GCA 90 bp | TCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGAGAAGGGATGTATCTaGAAGTCTTCCTGCTGGAGC | + |
Preference number: 4 (lower is better) Translates to: SFELSHLGHGWILPNNQLEKGCI*KSSCWS Trigger: GCTCCAGCAGGAAGACTTGCAGATACATCCCTTCTC...CAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR CAA 90 bp | ACCCAGGACCCGTGCTGTGTGTCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGTGGTTCCTCCTCCTGTaGCCAGGATATTGGACTGCC | + |
Preference number: 5 (lower is better) Translates to: TQDPCCVSFELSHLGHGWWFLLL*PGYWTA Trigger: GGCAGTCCAATATCCTGGCAACAGGAGGAGGAACCA...CCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS-3UTR CAA 90 bp | GCTGGTTCTGGGCAAAGCCGTGACCTGAGATCAGCTCCTTATAGTGGGGAGACCCTGAGCCTGAGGATCTaGGCTTCCTCCACATCAAAA | + |
Preference number: 5 (lower is better) Translates to: AGSGQSRDLRSAPYSGETLSLRI*ASSTSK Trigger: TTTTGATGTGGAGGAAGCCAAGATCCTCAGGCTCAG...GGTCTCCCCACTATAAGGAGCTGATCTCAGGTCACGGCTTTGCCCAGAACCAGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000183942.2 |
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CDS CAA 72 bp | CACAGCCTTGACAGCGCCTTGATGTTGAGTGAATGTTaGCAGGGGAGCCCATCCACTTTCTCCAGGACCACT | + |
Preference number: 6 (lower is better) Translates to: HSLDSALMLSEC*QGSPSTFSRTT Trigger: AGTGGTCCTGGAGAAAGTGGATGGGCTCCCCTGCAAACATTCACTCAACATCAAGGCGCTGTCAAGGCTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000006565.13 |
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CDS GCA 72 bp | TGTCTGGCAGAGAAGGGATGTATCTGCAAGTCTTCCTaGTGGAGCCAGGCGTGGCTTTCTGACTGTACAGTA | + |
Preference number: 6 (lower is better) Translates to: CLAEKGCICKSS*WSQAWLSDCTV Trigger: TACTGTACAGTCAGAAAGCCACGCCTGGCTCCAGCAGGAAGACTTGCAGATACATCCCTTCTCTGCCAGACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006565.13 ENSMUST00000183942.2 |
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CDS CCA 72 bp | CTGGCAGAGAAGGGATGTATCTGCAAGTCTTCCTGCTaGAGCCAGGCGTGGCTTTCTGACTGTACAGTACTT | + |
Preference number: 6 (lower is better) Translates to: LAEKGCICKSSC*SQAWLSDCTVL Trigger: AAGTACTGTACAGTCAGAAAGCCACGCCTGGCTCCAGCAGGAAGACTTGCAGATACATCCCTTCTCTGCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000006565.13 ENSMUST00000183942.2 |
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CDS CAA 90 bp | CCATCTGGACTCATTGTAAGACCCAGGACCCGTGCTGTGTGTCCTTaGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACC | + |
Preference number: 6 (lower is better) Translates to: PSGLIVRPRTRAVCP*SSATLAMVGYFQIT Trigger: GGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGTCTTACAATGAGTCCAGATGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000006565.13 |