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Pregenerated sensors for CDC20 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000006398

Ensembl transcript IDs: ENSMUST00000006565.13, ENSMUST00000183942.2

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CAA 90 bp GTAAGACCCAGGACCCGTGCTGTGTGTCCTTTGAGCTCAGCCACCTaGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGGGCA +
Preference number: 2 (lower is better)
Translates to: VRPRTRAVCPLSSAT*AMVGYFQITSWFWA
Trigger: TGCCCAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGTCTTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
3UTR CAA 72 bp AGGACCCGTGCTGTGTGTCCTTTGAGCTCAGCCACCTaGGCCATGGTTGGATACTTCCAAATAACCAGCTGG +
Preference number: 4 (lower is better)
Translates to: RTRAVCPLSSAT*AMVGYFQITSW
Trigger: CCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
3UTR CAA 72 bp CTCATTGTAAGACCCAGGACCCGTGCTGTGTGTCCTTaGAGCTCAGCCACCTTGGCCATGGTTGGATACTTC +
Preference number: 4 (lower is better)
Translates to: LIVRPRTRAVCP*SSATLAMVGYF
Trigger: GAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGTCTTACAATGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR GCA 90 bp GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGATCTGCAAGTCTTCCTaGTGGAGCCAGGCGTGGCTT +
Preference number: 4 (lower is better)
Translates to: ELSHLGHGWILPNNQLVLICKSS*WSQAWL
Trigger: AAGCCACGCCTGGCTCCAGCAGGAAGACTTGCAGAT...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR CCA 90 bp GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGGTTCTGGTAGCCTTCTaGGGCATTCTGAGGTTTGCC +
Preference number: 4 (lower is better)
Translates to: ELSHLGHGWILPNNQLVLVLVAF*GILRFA
Trigger: GGCAAACCTCAGAATGCCCCAGAAGGCTACCAGAAC...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR CCA 90 bp GTGTCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGTGCAAGTCTTCCTGCTaGAGCCAGGCGTGGCTTTCT +
Preference number: 4 (lower is better)
Translates to: VSFELSHLGHGWILPNNQCKSSC*SQAWLS
Trigger: AGAAAGCCACGCCTGGCTCCAGCAGGAAGACTTGCA...CTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR CCA 90 bp GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGGGACCTCAGCATTGCTaGTGCCTACAGCTAGGTAGT +
Preference number: 4 (lower is better)
Translates to: ELSHLGHGWILPNNQLVLGPQHC*CLQLGS
Trigger: ACTACCTAGCTGTAGGCACCAGCAATGCTGAGGTCC...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR CCA 90 bp GTGTGTCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCTGCACATCCCAGAGCTaGACCTCAGCATTGCTGGTG +
Preference number: 4 (lower is better)
Translates to: VCPLSSATLAMVGYFQITCTSQS*TSALLV
Trigger: CACCAGCAATGCTGAGGTCCAGCTCTGGGATGTGCA...GGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR CCA 90 bp GAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGTTCTGCACCATGCCACAGCCTaGATAGGATATAGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: ELSHLGHGWILPNNQLVLHHATA*IGYSCS
Trigger: GGAACAGCTATATCCTATCCAGGCTGTGGCATGGTG...CAGAACCAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR GCA 90 bp TCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACCAGCTGGAGAAGGGATGTATCTaGAAGTCTTCCTGCTGGAGC +
Preference number: 4 (lower is better)
Translates to: SFELSHLGHGWILPNNQLEKGCI*KSSCWS
Trigger: GCTCCAGCAGGAAGACTTGCAGATACATCCCTTCTC...CAGCTGGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR CAA 90 bp ACCCAGGACCCGTGCTGTGTGTCCTTTGAGCTCAGCCACCTTGGCCATGGTTGGTGGTTCCTCCTCCTGTaGCCAGGATATTGGACTGCC +
Preference number: 5 (lower is better)
Translates to: TQDPCCVSFELSHLGHGWWFLLL*PGYWTA
Trigger: GGCAGTCCAATATCCTGGCAACAGGAGGAGGAACCA...CCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS-3UTR CAA 90 bp GCTGGTTCTGGGCAAAGCCGTGACCTGAGATCAGCTCCTTATAGTGGGGAGACCCTGAGCCTGAGGATCTaGGCTTCCTCCACATCAAAA +
Preference number: 5 (lower is better)
Translates to: AGSGQSRDLRSAPYSGETLSLRI*ASSTSK
Trigger: TTTTGATGTGGAGGAAGCCAAGATCCTCAGGCTCAG...GGTCTCCCCACTATAAGGAGCTGATCTCAGGTCACGGCTTTGCCCAGAACCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000183942.2
CDS CAA 72 bp CACAGCCTTGACAGCGCCTTGATGTTGAGTGAATGTTaGCAGGGGAGCCCATCCACTTTCTCCAGGACCACT +
Preference number: 6 (lower is better)
Translates to: HSLDSALMLSEC*QGSPSTFSRTT
Trigger: AGTGGTCCTGGAGAAAGTGGATGGGCTCCCCTGCAAACATTCACTCAACATCAAGGCGCTGTCAAGGCTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000006565.13
CDS GCA 72 bp TGTCTGGCAGAGAAGGGATGTATCTGCAAGTCTTCCTaGTGGAGCCAGGCGTGGCTTTCTGACTGTACAGTA +
Preference number: 6 (lower is better)
Translates to: CLAEKGCICKSS*WSQAWLSDCTV
Trigger: TACTGTACAGTCAGAAAGCCACGCCTGGCTCCAGCAGGAAGACTTGCAGATACATCCCTTCTCTGCCAGACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006565.13
ENSMUST00000183942.2
CDS CCA 72 bp CTGGCAGAGAAGGGATGTATCTGCAAGTCTTCCTGCTaGAGCCAGGCGTGGCTTTCTGACTGTACAGTACTT +
Preference number: 6 (lower is better)
Translates to: LAEKGCICKSSC*SQAWLSDCTVL
Trigger: AAGTACTGTACAGTCAGAAAGCCACGCCTGGCTCCAGCAGGAAGACTTGCAGATACATCCCTTCTCTGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000006565.13
ENSMUST00000183942.2
CDS CAA 90 bp CCATCTGGACTCATTGTAAGACCCAGGACCCGTGCTGTGTGTCCTTaGAGCTCAGCCACCTTGGCCATGGTTGGATACTTCCAAATAACC +
Preference number: 6 (lower is better)
Translates to: PSGLIVRPRTRAVCP*SSATLAMVGYFQIT
Trigger: GGTTATTTGGAAGTATCCAACCATGGCCAAGGTGGCTGAGCTCAAAGGACACACAGCACGGGTCCTGGGTCTTACAATGAGTCCAGATGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000006565.13