Pregenerated sensors for CDC123 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000039128Ensembl transcript IDs: ENSMUST00000043864.9, ENSMUST00000128467.4
Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CATGGTGCAGGAGAAGGTGAGAGTTCTGCATCTTCATCTGAAGGCTaGTCGCAGGATACTGGCTTCCAGGCAGCTAGGGTGAGGGTGCTA | + |
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Preference number: 1 (lower is better) Translates to: HGAGEGESSASSSEG*SQDTGFQAARVRVL Trigger: TAGCACCCTCACCCTAGCTGCCTGGAAGCCAGTATCCTGCGAGCAGCCTTCAGATGAAGATGCAGAACTCTCACCTTCTCCTGCACCATG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR GCA 90 bp | GTATCTATGTGTAAATCTTCAGAAAATGGAGCAAAGCCTGGAGCTTaGATCAATTCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCAC | + |
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Preference number: 1 (lower is better) Translates to: VSMCKSSENGAKPGA*INSNPSSVRVIALH Trigger: GTGGAGAGCGATGACACGGACTGAGGAAGGATTGGAATTGATGCAAGCTCCAGGCTTTGCTCCATTTTCTGAAGATTTACACATAGATAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| 3UTR CCA 90 bp | ACAGACACCGTGACCAAGGCAACTCTTATAAGGACAACATTTAATTaGGGCTGGCTTGCAGGTTCAGAGGTTCAGTCCATTATCATCAAG | + |
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Preference number: 1 (lower is better) Translates to: TDTVTKATLIRTTFN*GWLAGSEVQSIIIK Trigger: CTTGATGATAATGGACTGAACCTCTGAACCTGCAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTGCCTTGGTCACGGTGTCTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR-3UTR GCA 90 bp | AATAGCGCCACTCCCCGGCCCAAGCATATACAAACCATCACAGTAGGCTTCCTTACCCTGCCCACCACCTaGCCCTCGCTGTGTTCTAGG | + |
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Preference number: 2 (lower is better) Translates to: NSATPRPKHIQTITVGFLTLPTT*PSLCSR Trigger: CCTAGAACACAGCGAGGGGCAGGTGGTGGGCAGGGT...AAGGAAGCCTACTGTGATGGTTTGTATATGCTTGGGCCGGGGAGTGGCGCTATT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR-3UTR GCA 90 bp | AAGGTGAGAGTTCTGCATCTTCATCTGAAGGCTGCTCGCAGGATACTGGCTTCCAATGATTTTGCACCCTaGCCACCACCTGCCCCTCGC | + |
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Preference number: 2 (lower is better) Translates to: KVRVLHLHLKAARRILASNDFAP*PPPAPR Trigger: GCGAGGGGCAGGTGGTGGGCAGGGTGCAAAATCATT...GGAAGCCAGTATCCTGCGAGCAGCCTTCAGATGAAGATGCAGAACTCTCACCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR-3UTR GCA 90 bp | GCAACTCTTATAAGGACAACATTTAATTGGGGCTGGCTTGCAGGTTCAGAGGTTGGCCTCTGCCAGAGCTaGTTCCCTCTTGGCCTGTTC | + |
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Preference number: 2 (lower is better) Translates to: ATLIRTTFNWGWLAGSEVGLCQS*FPLGLF Trigger: GAACAGGCCAAGAGGGAAGCAGCTCTGGCAGAGGCC...AACCTCTGAACCTGCAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR-3UTR CCA 90 bp | CATCAATTCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCACCTTCTCCACCTTGTAGGATGAGTGAGTaGGAGAAGGAGCTGCCACTA | + |
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Preference number: 2 (lower is better) Translates to: HQFQSFLSPCHRSPPSPPCRMSE*EKELPL Trigger: TAGTGGCAGCTCCTTCTCCCACTCACTCATCCTACA...AGGTGGAGAAGGTGGAGAGCGATGACACGGACTGAGGAAGGATTGGAATTGATG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| 3UTR-3UTR TCA 90 bp | GGTGAGAGTTCTGCATCTTCATCTGAAGGCTGCTCGCAGGATACTGGCTTCCAGGAATATAAAAGCCAATaGTTTTGCACCCTGCCCACC | + |
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Preference number: 2 (lower is better) Translates to: GESSASSSEGCSQDTGFQEYKSQ*FCTLPT Trigger: GGTGGGCAGGGTGCAAAATCATTGGCTTTTATATTC...CTGGAAGCCAGTATCCTGCGAGCAGCCTTCAGATGAAGATGCAGAACTCTCACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR GCA 72 bp | GGAGAAGGTGAGAGTTCTGCATCTTCATCTGAAGGCTaGTCGCAGGATACTGGCTTCCAGGCAGCTAGGGTG | + |
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Preference number: 3 (lower is better) Translates to: GEGESSASSSEG*SQDTGFQAARV Trigger: CACCCTAGCTGCCTGGAAGCCAGTATCCTGCGAGCAGCCTTCAGATGAAGATGCAGAACTCTCACCTTCTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR-3UTR CAA 90 bp | AAGGTGAGAGTTCTGCATCTTCATCTGAAGGCTGCTCGCAGGATACTGGCTTCCAGAGCTGCTTCCCTCTaGGCCTGTTCTCCAAGCAGC | + |
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Preference number: 3 (lower is better) Translates to: KVRVLHLHLKAARRILASRAASL*ACSPSS Trigger: GCTGCTTGGAGAACAGGCCAAGAGGGAAGCAGCTCT...GGAAGCCAGTATCCTGCGAGCAGCCTTCAGATGAAGATGCAGAACTCTCACCTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR CCA 72 bp | TCAGAGGTTCAGTCCATTATCATCAAGGTGGGAGCATaGCAGCATCCAGGCAGGCATGGTGCAGGAGAAGGT | + |
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Preference number: 3 (lower is better) Translates to: SEVQSIIIKVGA*QHPGRHGAGEG Trigger: ACCTTCTCCTGCACCATGCCTGCCTGGATGCTGCCATGCTCCCACCTTGATGATAATGGACTGAACCTCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR CCA 72 bp | GTGACCAAGGCAACTCTTATAAGGACAACATTTAATTaGGGCTGGCTTGCAGGTTCAGAGGTTCAGTCCATT | + |
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Preference number: 3 (lower is better) Translates to: VTKATLIRTTFN*GWLAGSEVQSI Trigger: AATGGACTGAACCTCTGAACCTGCAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTGCCTTGGTCAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR GCA 72 bp | TGTAAATCTTCAGAAAATGGAGCAAAGCCTGGAGCTTaGATCAATTCCAATCCTTCCTCAGTCCGTGTCATC | + |
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Preference number: 3 (lower is better) Translates to: CKSSENGAKPGA*INSNPSSVRVI Trigger: GATGACACGGACTGAGGAAGGATTGGAATTGATGCAAGCTCCAGGCTTTGCTCCATTTTCTGAAGATTTACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| 3UTR CCA 72 bp | AAGGCAACTCTTATAAGGACAACATTTAATTGGGGCTaGCTTGCAGGTTCAGAGGTTCAGTCCATTATCATC | + |
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Preference number: 3 (lower is better) Translates to: KATLIRTTFNWG*LAGSEVQSIII Trigger: GATGATAATGGACTGAACCTCTGAACCTGCAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTGCCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR TCA 72 bp | AGAGCAGTATGTGTCTTAGTTAAGTTTTTACTGCTGTaGACAGACACCGTGACCAAGGCAACTCTTATAAGG | + |
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Preference number: 3 (lower is better) Translates to: RAVCVLVKFLLL*TDTVTKATLIR Trigger: CCTTATAAGAGTTGCCTTGGTCACGGTGTCTGTTCACAGCAGTAAAAACTTAACTAAGACACATACTGCTCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR TCA 90 bp | CCCACCACCTGCCCCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGCTTCGGCTGGGCTGCACTGTaGCTTCACTGTTTGTGCAAC | + |
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Preference number: 4 (lower is better) Translates to: PTTCPSLCSRRGLCQSCFGWAAL*LHCLCN Trigger: GTTGCACAAACAGTGAAGTCACAGTGCAGCCCAGCC...GAAGCAGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGGGGCAGGTGGTGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | CCCTGCCCACCACCTGCCCCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGAGCATCCTCCCCGGTaGAAAGGTCTACAAAGTCCT | + |
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Preference number: 4 (lower is better) Translates to: PCPPPAPRCVLGEASARAEHPPR*KGLQSP Trigger: AGGACTTTGTAGACCTTTCCACCGGGGAGGATGCTC...AGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGGGGCAGGTGGTGGGCAGGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | CCCTGCCCACCACCTGCCCCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTTTACCACTGTCTGACTaGGAGCATGTTGGCGGATCT | + |
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Preference number: 4 (lower is better) Translates to: PCPPPAPRCVLGEASARALPLSD*EHVGGS Trigger: AGATCCGCCAACATGCTCCCAGTCAGACAGTGGTAA...AGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGGGGCAGGTGGTGGGCAGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | CCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGCTTCCCTCTTGGCCTGTTGTGCAACGGAAGGCTaGAGAATCCTGCTCCTGAGC | + |
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Preference number: 4 (lower is better) Translates to: PRCVLGEASARAASLLACCATEG*RILLLS Trigger: GCTCAGGAGCAGGATTCTCCAGCCTTCCGTTGCACA...ACAGGCCAAGAGGGAAGCAGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR TCA 90 bp | CCCTGCCCACCACCTGCCCCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGCAGGAAGATATCACTaGGAGTTTTACACTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: PCPPPAPRCVLGEASARAAGRYH*EFYTSG Trigger: CCCTGAAGTGTAAAACTCTCAGTGATATCTTCCTGC...AGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGGGGCAGGTGGTGGGCAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR TCA 90 bp | CCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGCTTCCCTCTTGGCCTGTCCAAGTAAACAACAGTaGGTCTGTGACCTCCCCAAA | + |
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Preference number: 4 (lower is better) Translates to: PRCVLGEASARAASLLACPSKQQ*VCDLPK Trigger: TTTGGGGAGGTCACAGACTCACTGTTGTTTACTTGG...ACAGGCCAAGAGGGAAGCAGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | TCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCACCTTCTCCACCTTCTCTGTAGAGCAGGTAGGTTGTaGCCCTGGCTGGCAGGCACA | + |
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Preference number: 4 (lower is better) Translates to: SNPSSVRVIALHLLHLLCRAGRL*PWLAGT Trigger: TGTGCCTGCCAGCCAGGGCCACAACCTACCTGCTCT...ACAGAGAAGGTGGAGAAGGTGGAGAGCGATGACACGGACTGAGGAAGGATTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS-3UTR TCA 90 bp | AATAGCGCCACTCCCCGGCCCAAGCATATACAAACCATCACAGTAGGCTTCCTTCGGATCTTCCCTTCCTaGGACCACCAGAGTCCCATC | + |
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Preference number: 4 (lower is better) Translates to: NSATPRPKHIQTITVGFLRIFPS*DHQSPI Trigger: GATGGGACTCTGGTGGTCTCAGGAAGGGAAGATCCG...AAGGAAGCCTACTGTGATGGTTTGTATATGCTTGGGCCGGGGAGTGGCGCTATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | GCCACGCTTCCTAATAGCGCCACTCCCCGGCCCAAGCATATACAAACCATCACAAAGGCTTCGGAAAAGTaGGTACCACGCGGAGAACTG | + |
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Preference number: 4 (lower is better) Translates to: ATLPNSATPRPKHIQTITKASEK*VPRGEL Trigger: CAGTTCTCCGCGTGGTACCCACTTTTCCGAAGCCTT...TGTGATGGTTTGTATATGCTTGGGCCGGGGAGTGGCGCTATTAGGAAGCGTGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR TCA 90 bp | CCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGCTTCCCTCTTGGCCTGTACTGTAGGTGTTCCTTaGAAAAGTCTTGAATGCATC | + |
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Preference number: 4 (lower is better) Translates to: PRCVLGEASARAASLLACTVGVP*KSLECI Trigger: GATGCATTCAAGACTTTTTCAAGGAACACCTACAGT...ACAGGCCAAGAGGGAAGCAGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | GCCACGCTTCCTAATAGCGCCACTCCCCGGCCCAAGCATATACAAACCATCACAGAACTCAGGAAACTCTaGTGCCGTAAGTGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: ATLPNSATPRPKHIQTITELRKL*CRKCGC Trigger: ACAGCCACACTTACGGCACCAGAGTTTCCTGAGTTC...TGTGATGGTTTGTATATGCTTGGGCCGGGGAGTGGCGCTATTAGGAAGCGTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | CATCAATTCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCACCTTCTCCACCTGAACTCAGGAAACTCTaGTGCCGTAAGTGTGGCTGT | + |
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Preference number: 4 (lower is better) Translates to: HQFQSFLSPCHRSPPSPPELRKL*CRKCGC Trigger: ACAGCCACACTTACGGCACCAGAGTTTCCTGAGTTC...AGGTGGAGAAGGTGGAGAGCGATGACACGGACTGAGGAAGGATTGGAATTGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS-3UTR TCA 90 bp | CCACGCTTCCTAATAGCGCCACTCCCCGGCCCAAGCATATACAAACCATCACAGATAGCTTCTTGGACTTaGGTGTTGAACTCAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: PRFLIAPLPGPSIYKPSQIASWT*VLNSGN Trigger: GTTTCCTGAGTTCAACACTCAAGTCCAAGAAGCTAT...CTGTGATGGTTTGTATATGCTTGGGCCGGGGAGTGGCGCTATTAGGAAGCGTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | GGTGAGAGTTCTGCATCTTCATCTGAAGGCTGCTCGCAGGATACTGGCTTCCAGGGCTGTGTGAAGTCATaGGTGATGAAATCAGAACTC | + |
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Preference number: 4 (lower is better) Translates to: GESSASSSEGCSQDTGFQGCVKS*VMKSEL Trigger: GAGTTCTGATTTCATCACCCATGACTTCACACAGCC...CTGGAAGCCAGTATCCTGCGAGCAGCCTTCAGATGAAGATGCAGAACTCTCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | GCCACGCTTCCTAATAGCGCCACTCCCCGGCCCAAGCATATACAAACCATCACATGTGACCTCCCCAAATaGATTAAAGTCAATGAGCCA | + |
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Preference number: 4 (lower is better) Translates to: ATLPNSATPRPKHIQTITCDLPK*IKVNEP Trigger: TGGCTCATTGACTTTAATCCATTTGGGGAGGTCACA...TGTGATGGTTTGTATATGCTTGGGCCGGGGAGTGGCGCTATTAGGAAGCGTGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| 3UTR CAA 72 bp | GTGGGAGAAGGAGCTGCCACTAAAGTGAGGATGGTGTaGCTCTCAGTAATGCAGTTTGAGTTTGGGATGTCC | + |
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Preference number: 4 (lower is better) Translates to: VGEGAATKVRMV*LSVMQFEFGMS Trigger: GGACATCCCAAACTCAAACTGCATTACTGAGAGCAACACCATCCTCACTTTAGTGGCAGCTCCTTCTCCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS-3UTR TCA 90 bp | AATTCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCACCTTCTCCACCTTCTCGCAGGAAGATATCACTaGGAGTTTTACACTTCAGGG | + |
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Preference number: 4 (lower is better) Translates to: NSNPSSVRVIALHLLHLLAGRYH*EFYTSG Trigger: CCCTGAAGTGTAAAACTCTCAGTGATATCTTCCTGC...GAGAAGGTGGAGAAGGTGGAGAGCGATGACACGGACTGAGGAAGGATTGGAATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS-3UTR TCA 90 bp | AATAGCGCCACTCCCCGGCCCAAGCATATACAAACCATCACAGTAGGCTTCCTTGAGTCATCAGTGCAATaGATAAACGGCTGTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: NSATPRPKHIQTITVGFLESSVQ*INGCVK Trigger: CTTCACACAGCCGTTTATTCATTGCACTGATGACTC...AAGGAAGCCTACTGTGATGGTTTGTATATGCTTGGGCCGGGGAGTGGCGCTATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR TCA 90 bp | CATCAATTCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCACCTTCTCCACCTGAGTCATCAGTGCAATaGATAAACGGCTGTGTGAAG | + |
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Preference number: 4 (lower is better) Translates to: HQFQSFLSPCHRSPPSPPESSVQ*INGCVK Trigger: CTTCACACAGCCGTTTATTCATTGCACTGATGACTC...AGGTGGAGAAGGTGGAGAGCGATGACACGGACTGAGGAAGGATTGGAATTGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS-3UTR TCA 90 bp | GCAACTCTTATAAGGACAACATTTAATTGGGGCTGGCTTGCAGGTTCAGAGGTTGAGCATCTCCTTCAGTaGCCTCACCACGTAGGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ATLIRTTFNWGWLAGSEVEHLLQ*PHHVGC Trigger: ACAACCTACGTGGTGAGGTCACTGAAGGAGATGCTC...AACCTCTGAACCTGCAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CCA 90 bp | GCAACTCTTATAAGGACAACATTTAATTGGGGCTGGCTTGCAGGTTCAGAGGTTGGTCTACAAAGTCCTTaGGCAGCCCGAAGCTCAGAT | + |
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Preference number: 4 (lower is better) Translates to: ATLIRTTFNWGWLAGSEVGLQSP*AARSSD Trigger: ATCTGAGCTTCGGGCTGCCCAAGGACTTTGTAGACC...AACCTCTGAACCTGCAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGAGTTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR TCA 90 bp | AAAGTGAGGATGGTGTTGCTCTCAGTAATGCAGTTTGAGTTTGGGATGTCCGCCATAGCTTCTTGGACTTaGGTGTTGAACTCAGGAAAC | + |
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Preference number: 4 (lower is better) Translates to: KVRMVLLSVMQFEFGMSAIASWT*VLNSGN Trigger: GTTTCCTGAGTTCAACACTCAAGTCCAAGAAGCTAT...GGCGGACATCCCAAACTCAAACTGCATTACTGAGAGCAACACCATCCTCACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS-3UTR CAA 90 bp | ACCTGCCCCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGCTTCCCTCTTCTGACTGGGAGCATGTaGGCGGATCTTCCCTTCCTG | + |
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Preference number: 5 (lower is better) Translates to: TCPSLCSRRGLCQSCFPLLTGSM*ADLPFL Trigger: CAGGAAGGGAAGATCCGCCAACATGCTCCCAGTCAG...AAGAGGGAAGCAGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGGGGCAGGT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CCA 90 bp | GGGGCTGGGCTGCACTGTGACTTCACTGTTTGTGCAACGGAAGGCTaGAGAATCCTGCTCCTGAGCATCTCCTTCAGTGACCTCACCACG | + |
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Preference number: 5 (lower is better) Translates to: GAGLHCDFTVCATEG*RILLLSISFSDLTT Trigger: CGTGGTGAGGTCACTGAAGGAGATGCTCAGGAGCAGGATTCTCCAGCCTTCCGTTGCACAAACAGTGAAGTCACAGTGCAGCCCAGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CAA 90 bp | ATCAATTCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCACCTTCTCCACCTTTGGAGAGCAGGTAGGTaGTGGCCCTGGCTGGCAGGC | + |
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Preference number: 5 (lower is better) Translates to: INSNPSSVRVIALHLLHLWRAGR*WPWLAG Trigger: GCCTGCCAGCCAGGGCCACAACCTACCTGCTCTCCA...AAGGTGGAGAAGGTGGAGAGCGATGACACGGACTGAGGAAGGATTGGAATTGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS-3UTR CAA 90 bp | CCTGCCCCTCGCTGTGTTCTAGGCGAGGCCTCTGCCAGAGCTGCTTCCCTCTTGGATAGCTTCTTGGACTaGAGTGTTGAACTCAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: PAPRCVLGEASARAASLLDSFLD*SVELRK Trigger: TTTCCTGAGTTCAACACTCAAGTCCAAGAAGCTATC...CAAGAGGGAAGCAGCTCTGGCAGAGGCCTCGCCTAGAACACAGCGAGGGGCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CAA 90 bp | GGCATGGTGCAGGAGAAGGTGAGAGTTCTGCATCTTCATCTGAAGGCTGCTCGCAGGTCTACAAAGTCCTaGGGCAGCCCGAAGCTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GMVQEKVRVLHLHLKAARRSTKS*GSPKLR Trigger: TCTGAGCTTCGGGCTGCCCAAGGACTTTGTAGACCT...GCGAGCAGCCTTCAGATGAAGATGCAGAACTCTCACCTTCTCCTGCACCATGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS TCA 90 bp | TGCAACGGAAGGCTGGAGAATCCTGCTCCTGAGCATCTCCTTCAGTaGCCTCACCACGTAGGTTGTTCTCAGATGTTAGCTCTTCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: CNGRLENPAPEHLLQ*PHHVGCSQMLALPK Trigger: CTTGGGAAGAGCTAACATCTGAGAACAACCTACGTGGTGAGGTCACTGAAGGAGATGCTCAGGAGCAGGATTCTCCAGCCTTCCGTTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CAA 90 bp | CCAGGCAGGCATGGTGCAGGAGAAGGTGAGAGTTCTGCATCTTCATCTGAAGGCACCTCACCACGTAGGTaGTTCTCAGATGTTAGCTCT | + |
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Preference number: 5 (lower is better) Translates to: PGRHGAGEGESSASSSEGTSPRR*FSDVSS Trigger: AGAGCTAACATCTGAGAACAACCTACGTGGTGAGGT...GCCTTCAGATGAAGATGCAGAACTCTCACCTTCTCCTGCACCATGCCTGCCTGG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS TCA 90 bp | GTGACTTCACTGTTTGTGCAACGGAAGGCTGGAGAATCCTGCTCCTaGGCATCTCCTTCAGTGACCTCACCACGTAGGTTGTTCTCAGAT | + |
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Preference number: 5 (lower is better) Translates to: VTSLFVQRKAGESCS*ASPSVTSPRRLFSD Trigger: ATCTGAGAACAACCTACGTGGTGAGGTCACTGAAGGAGATGCTCAGGAGCAGGATTCTCCAGCCTTCCGTTGCACAAACAGTGAAGTCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CCA 90 bp | AGGAAGCGGGAGGATGACACTCTTGATGGTAAGGCTTCGGAAAAGTaGGTACCACGCGGAGAACTGACAGTGACTAACATGCTCCTTCTT | + |
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Preference number: 5 (lower is better) Translates to: RKREDDTLDGKASEK*VPRGELTVTNMLLL Trigger: AAGAAGGAGCATGTTAGTCACTGTCAGTTCTCCGCGTGGTACCCACTTTTCCGAAGCCTTACCATCAAGAGTGTCATCCTCCCGCTTCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS-3UTR CAA 90 bp | CCAGGCAGGCATGGTGCAGGAGAAGGTGAGAGTTCTGCATCTTCATCTGAAGGCCGAATTGATAGCTTCTaGGACTTGAGTGTTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: PGRHGAGEGESSASSSEGRIDSF*DLSVEL Trigger: GAGTTCAACACTCAAGTCCAAGAAGCTATCAATTCG...GCCTTCAGATGAAGATGCAGAACTCTCACCTTCTCCTGCACCATGCCTGCCTGG 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS TCA 90 bp | TCCTCTTGCTCATTTCTTTTCAGCTTAAGGAAATCGATGAGCTTGTaGGCATCCTCCCCGGTGGAAAGGTCTACAAAGTCCTTGGGCAGC | + |
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Preference number: 5 (lower is better) Translates to: SSCSFLFSLRKSMSL*ASSPVERSTKSLGS Trigger: GCTGCCCAAGGACTTTGTAGACCTTTCCACCGGGGAGGATGCTCACAAGCTCATCGATTTCCTTAAGCTGAAAAGAAATGAGCAAGAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CCA 90 bp | CGAATTGATAGCTTCTTGGACTTGAGTGTTGAACTCAGGAAACTCTaGTGCCGTAAGTGTGGCTGTGCTCTCATCATCGGACCACTGTGT | + |
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Preference number: 5 (lower is better) Translates to: RIDSFLDLSVELRKL*CRKCGCALIIGPLC Trigger: ACACAGTGGTCCGATGATGAGAGCACAGCCACACTTACGGCACCAGAGTTTCCTGAGTTCAACACTCAAGTCCAAGAAGCTATCAATTCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043864.9 ENSMUST00000128467.4 |
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| CDS-3UTR CAA 90 bp | TCCAATCCTTCCTCAGTCCGTGTCATCGCTCTCCACCTTCTCCACCTTCTCTGTGATAGCTTCTTGGACTaGAGTGTTGAACTCAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: SNPSSVRVIALHLLHLLCDSFLD*SVELRK Trigger: TTTCCTGAGTTCAACACTCAAGTCCAAGAAGCTATC...ACAGAGAAGGTGGAGAAGGTGGAGAGCGATGACACGGACTGAGGAAGGATTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS GCA 90 bp | ATTGATAGCTTCTTGGACTTGAGTGTTGAACTCAGGAAACTCTGGTaGCGTAAGTGTGGCTGTGCTCTCATCATCGGACCACTGTGTTTC | + |
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Preference number: 5 (lower is better) Translates to: IDSFLDLSVELRKLW*RKCGCALIIGPLCF Trigger: GAAACACAGTGGTCCGATGATGAGAGCACAGCCACACTTACGGCACCAGAGTTTCCTGAGTTCAACACTCAAGTCCAAGAAGCTATCAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043864.9 ENSMUST00000128467.4 |
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| CDS-3UTR CAA 90 bp | AAAGTGAGGATGGTGTTGCTCTCAGTAATGCAGTTTGAGTTTGGGATGTCCGCCCGAATTGATAGCTTCTaGGACTTGAGTGTTGAACTC | + |
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Preference number: 5 (lower is better) Translates to: KVRMVLLSVMQFEFGMSARIDSF*DLSVEL Trigger: GAGTTCAACACTCAAGTCCAAGAAGCTATCAATTCG...GGCGGACATCCCAAACTCAAACTGCATTACTGAGAGCAACACCATCCTCACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS TCA 90 bp | ACAAGCTCGTACTCTATACAAGGGTCTGGAGAGTCATCAGTGCAATaGATAAACGGCTGTGTGAAGTCATGGGTGATGAAATCAGAACTC | + |
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Preference number: 5 (lower is better) Translates to: TSSYSIQGSGESSVQ*INGCVKSWVMKSEL Trigger: GAGTTCTGATTTCATCACCCATGACTTCACACAGCCGTTTATTCATTGCACTGATGACTCTCCAGACCCTTGTATAGAGTACGAGCTTGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS TCA 90 bp | TTTGGCTCGTACTCTATACAAGGGTCTGGAGAGTCATCAGTGCAATaGATAAACGGCTGTGTGAAGTCATGGGTGATGAAATCAGAACTC | + |
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Preference number: 5 (lower is better) Translates to: FGSYSIQGSGESSVQ*INGCVKSWVMKSEL Trigger: GAGTTCTGATTTCATCACCCATGACTTCACACAGCCGTTTATTCATTGCACTGATGACTCTCCAGACCCTTGTATAGAGTACGAGCCAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000128467.4 |
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| CDS CCA 72 bp | GAGCATCCTCCCCGGTGGAAAGGTCTACAAAGTCCTTaGGCAGCCCGAAGCTCAGATAGGGGCTGGGCTGCA | + |
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Preference number: 6 (lower is better) Translates to: EHPPRWKGLQSP*AARSSDRGWAA Trigger: TGCAGCCCAGCCCCTATCTGAGCTTCGGGCTGCCCAAGGACTTTGTAGACCTTTCCACCGGGGAGGATGCTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CAA 72 bp | CCTCTGCTTCGTTACCACTGTCTGACTGGGAGCATGTaGGCGGATCTTCCCTTCCTGAGACCACCAGAGTCC | + |
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Preference number: 6 (lower is better) Translates to: PLLRYHCLTGSM*ADLPFLRPPES Trigger: GGACTCTGGTGGTCTCAGGAAGGGAAGATCCGCCAACATGCTCCCAGTCAGACAGTGGTAACGAAGCAGAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS TCA 72 bp | CTGTTTGTGCAACGGAAGGCTGGAGAATCCTGCTCCTaGGCATCTCCTTCAGTGACCTCACCACGTAGGTTG | + |
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Preference number: 6 (lower is better) Translates to: LFVQRKAGESCS*ASPSVTSPRRL Trigger: CAACCTACGTGGTGAGGTCACTGAAGGAGATGCTCAGGAGCAGGATTCTCCAGCCTTCCGTTGCACAAACAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CCA 72 bp | CAGGGAACTGTTCATCGCTATCCAGTACGCATCCCTTaGGGCACTCCAGTTAAGCTTAGGGAAGACACTACC | + |
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Preference number: 6 (lower is better) Translates to: QGTVHRYPVRIP*GTPVKLREDTT Trigger: GGTAGTGTCTTCCCTAAGCTTAACTGGAGTGCCCCAAGGGATGCGTACTGGATAGCGATGAACAGTTCCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043864.9 ENSMUST00000128467.4 |
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| CDS CCA 72 bp | CTGCACTGTGACTTCACTGTTTGTGCAACGGAAGGCTaGAGAATCCTGCTCCTGAGCATCTCCTTCAGTGAC | + |
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Preference number: 6 (lower is better) Translates to: LHCDFTVCATEG*RILLLSISFSD Trigger: GTCACTGAAGGAGATGCTCAGGAGCAGGATTCTCCAGCCTTCCGTTGCACAAACAGTGAAGTCACAGTGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CAA 90 bp | ACTGTGTTTCCTCTGCTTCGTTACCACTGTCTGACTGGGAGCATGTaGGCGGATCTTCCCTTCCTGAGACCACCAGAGTCCCATCATCAA | + |
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Preference number: 6 (lower is better) Translates to: TVFPLLRYHCLTGSM*ADLPFLRPPESHHQ Trigger: TTGATGATGGGACTCTGGTGGTCTCAGGAAGGGAAGATCCGCCAACATGCTCCCAGTCAGACAGTGGTAACGAAGCAGAGGAAACACAGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS TCA 72 bp | AGGCTGGAGAATCCTGCTCCTGAGCATCTCCTTCAGTaGCCTCACCACGTAGGTTGTTCTCAGATGTTAGCT | + |
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Preference number: 6 (lower is better) Translates to: RLENPAPEHLLQ*PHHVGCSQMLA Trigger: AGCTAACATCTGAGAACAACCTACGTGGTGAGGTCACTGAAGGAGATGCTCAGGAGCAGGATTCTCCAGCCT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS GCA 72 bp | TTCTTGGACTTGAGTGTTGAACTCAGGAAACTCTGGTaGCGTAAGTGTGGCTGTGCTCTCATCATCGGACCA | + |
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Preference number: 6 (lower is better) Translates to: FLDLSVELRKLW*RKCGCALIIGP Trigger: TGGTCCGATGATGAGAGCACAGCCACACTTACGGCACCAGAGTTTCCTGAGTTCAACACTCAAGTCCAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043864.9 ENSMUST00000128467.4 |
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| CDS CCA 72 bp | GAGGATGACACTCTTGATGGTAAGGCTTCGGAAAAGTaGGTACCACGCGGAGAACTGACAGTGACTAACATG | + |
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Preference number: 6 (lower is better) Translates to: EDDTLDGKASEK*VPRGELTVTNM Trigger: CATGTTAGTCACTGTCAGTTCTCCGCGTGGTACCCACTTTTCCGAAGCCTTACCATCAAGAGTGTCATCCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CCA 72 bp | AGCTTCTTGGACTTGAGTGTTGAACTCAGGAAACTCTaGTGCCGTAAGTGTGGCTGTGCTCTCATCATCGGA | + |
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Preference number: 6 (lower is better) Translates to: SFLDLSVELRKL*CRKCGCALIIG Trigger: TCCGATGATGAGAGCACAGCCACACTTACGGCACCAGAGTTTCCTGAGTTCAACACTCAAGTCCAAGAAGCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000043864.9 ENSMUST00000128467.4 |
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| CDS TCA 72 bp | TCATTTCTTTTCAGCTTAAGGAAATCGATGAGCTTGTaGGCATCCTCCCCGGTGGAAAGGTCTACAAAGTCC | + |
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Preference number: 6 (lower is better) Translates to: SFLFSLRKSMSL*ASSPVERSTKS Trigger: GGACTTTGTAGACCTTTCCACCGGGGAGGATGCTCACAAGCTCATCGATTTCCTTAAGCTGAAAAGAAATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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| CDS CCA 72 bp | TTTTCGGAGAACAAGCTCGTACTCTATACAAGGGTCTaGAGAGTCATCAGTGCAATGAATAAACGGCTGTGT | + |
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Preference number: 6 (lower is better) Translates to: FSENKLVLYTRV*RVISAMNKRLC Trigger: ACACAGCCGTTTATTCATTGCACTGATGACTCTCCAGACCCTTGTATAGAGTACGAGCTTGTTCTCCGAAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000043864.9 |
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