Pregenerated sensors for CDA (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028755Ensembl transcript IDs: ENSMUST00000030535.4
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGGAGTGCTCTGAGTCCCCAAGAGGATGTGGGCTTTGGCCTAGGTaGGTGGCACCTTCCATCACTCAAGGGGAGGCTGTGGTGTGTGAA | + |
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Preference number: 1 (lower is better) Translates to: EECSESPRGCGLWPR*VAPSITQGEAVVCE Trigger: TTCACACACCACAGCCTCCCCTTGAGTGATGGAAGGTGCCACTCACCTAGGCCAAAGCCCACATCCTCTTGGGGACTCAGAGCACTCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR CCA 90 bp | TTTGGCCTAGGTGAGTGGCACCTTCCATCACTCAAGGGGAGGCTGTaGTGTGTGAATCAAGGTCACCCTTGCCCAGCCATTTGGGACCCA | + |
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Preference number: 1 (lower is better) Translates to: FGLGEWHLPSLKGRL*CVNQGHPCPAIWDP Trigger: TGGGTCCCAAATGGCTGGGCAAGGGTGACCTTGATTCACACACCACAGCCTCCCCTTGAGTGATGGAAGGTGCCACTCACCTAGGCCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR CAA 90 bp | AGAAGGCTGGTAGGGAGGCAGACCGGGTCTGGAATACCCGTGTCTTaGGGAGTGGAAGGAGAGGAGTGCTCTGAGTCCCCAAGAGGATGT | + |
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Preference number: 2 (lower is better) Translates to: RRLVGRQTGSGIPVS*GVEGEECSESPRGC Trigger: ACATCCTCTTGGGGACTCAGAGCACTCCTCTCCTTCCACTCCCAAAGACACGGGTATTCCAGACCCGGTCTGCCTCCCTACCAGCCTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR-3UTR GCA 90 bp | CTTGCCCAGCCATTTGGGACCCATGTGGCAAGTGTCCCCAAGGCCCAGCCAGAGTCCTTAGGTAGGGCTTaGACATTCAGCAGACATTCT | + |
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Preference number: 2 (lower is better) Translates to: LAQPFGTHVASVPKAQPESLGRA*TFSRHS Trigger: AGAATGTCTGCTGAATGTGCAAGCCCTACCTAAGGA...CTCTGGCTGGGCCTTGGGGACACTTGCCACATGGGTCCCAAATGGCTGGGCAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR-3UTR GCA 90 bp | AATCTGAAAAGTCACACGACAGAGCCTAAGAAGGCTGGTAGGGAGGCAGACCGGAATCAAGGTCACCCTTaGCCAGCCATTTGGGACCCA | + |
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Preference number: 2 (lower is better) Translates to: NLKSHTTEPKKAGREADRNQGHP*PAIWDP Trigger: TGGGTCCCAAATGGCTGGGCAAGGGTGACCTTGATT...CCGGTCTGCCTCCCTACCAGCCTTCTTAGGCTCTGTCGTGTGACTTTTCAGATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR CCA 72 bp | TCAAGGTCACCCTTGCCCAGCCATTTGGGACCCATGTaGCAAGTGTCCCCAAGGCCCAGCCAGAGACAGCAT | + |
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Preference number: 3 (lower is better) Translates to: SRSPLPSHLGPM*QVSPRPSQRQH Trigger: ATGCTGTCTCTGGCTGGGCCTTGGGGACACTTGCCACATGGGTCCCAAATGGCTGGGCAAGGGTGACCTTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR TCA 72 bp | GGCACCTTCCATCACTCAAGGGGAGGCTGTGGTGTGTaGATCAAGGTCACCCTTGCCCAGCCATTTGGGACC | + |
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Preference number: 3 (lower is better) Translates to: GTFHHSRGGCGV*IKVTLAQPFGT Trigger: GGTCCCAAATGGCTGGGCAAGGGTGACCTTGATTCACACACCACAGCCTCCCCTTGAGTGATGGAAGGTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR GCA 72 bp | AAGGGGAGGCTGTGGTGTGTGAATCAAGGTCACCCTTaGCCAGCCATTTGGGACCCATGTGGCAAGTGTCCC | + |
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Preference number: 3 (lower is better) Translates to: KGRLWCVNQGHP*PAIWDPCGKCP Trigger: GGGACACTTGCCACATGGGTCCCAAATGGCTGGGCAAGGGTGACCTTGATTCACACACCACAGCCTCCCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR CCA 72 bp | GGCAGACCGGGTCTGGAATACCCGTGTCTTTGGGAGTaGAAGGAGAGGAGTGCTCTGAGTCCCCAAGAGGAT | + |
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Preference number: 3 (lower is better) Translates to: GRPGLEYPCLWE*KERSALSPQED Trigger: ATCCTCTTGGGGACTCAGAGCACTCCTCTCCTTCCACTCCCAAAGACACGGGTATTCCAGACCCGGTCTGCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR CCA 72 bp | GAGCCTAAGAAGGCTGGTAGGGAGGCAGACCGGGTCTaGAATACCCGTGTCTTTGGGAGTGGAAGGAGAGGA | + |
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Preference number: 3 (lower is better) Translates to: EPKKAGREADRV*NTRVFGSGRRG Trigger: TCCTCTCCTTCCACTCCCAAAGACACGGGTATTCCAGACCCGGTCTGCCTCCCTACCAGCCTTCTTAGGCTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| 3UTR CCA 72 bp | GGTGAGTGGCACCTTCCATCACTCAAGGGGAGGCTGTaGTGTGTGAATCAAGGTCACCCTTGCCCAGCCATT | + |
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Preference number: 3 (lower is better) Translates to: GEWHLPSLKGRL*CVNQGHPCPAI Trigger: AATGGCTGGGCAAGGGTGACCTTGATTCACACACCACAGCCTCCCCTTGAGTGATGGAAGGTGCCACTCACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR TCA 90 bp | GCTCTGAGTCCCCAAGAGGATGTGGGCTTTGGCCTAGGTGAGTGGCACCTTCCATCCTCCCGTCCCCGGTaGGCAGGGCAGCCCCCACAG | + |
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Preference number: 4 (lower is better) Translates to: ALSPQEDVGFGLGEWHLPSSRPR*AGQPPQ Trigger: CTGTGGGGGCTGCCCTGCTCACCGGGGACGGGAGGA...TGGAAGGTGCCACTCACCTAGGCCAAAGCCCACATCCTCTTGGGGACTCAGAGC 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CCA 90 bp | GAGTGGCACCTTCCATCACTCAAGGGGAGGCTGTGGTGTGTGAATCAAGGTCACGCCGGCAGCAGCTCCTaGACCGTCCTGACTACGAAT | + |
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Preference number: 4 (lower is better) Translates to: EWHLPSLKGRLWCVNQGHAGSSS*TVLTTN Trigger: ATTCGTAGTCAGGACGGTCCAGGAGCTGCTGCCGGC...GTGACCTTGATTCACACACCACAGCCTCCCCTTGAGTGATGGAAGGTGCCACTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR TCA 90 bp | TGTCCCCAAGGCCCAGCCAGAGACAGCATCATTATGAAGTCTTCCAAGAGCCGTGTAGGGGCAGTAGGCTaGCTTCTTGGCCTCACGAGA | + |
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Preference number: 4 (lower is better) Translates to: CPQGPARDSIIMKSSKSRVGAVG*LLGLTR Trigger: TCTCGTGAGGCCAAGAAGTCAGCCTACTGCCCCTAC...ACGGCTCTTGGAAGACTTCATAATGATGCTGTCTCTGGCTGGGCCTTGGGGACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CCA 90 bp | GGCAAGTGTCCCCAAGGCCCAGCCAGAGACAGCATCATTATGAAGTCTTCCAAGAGATGGCCTTCTGGATaGCAGTCCGCTCGGCACACA | + |
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Preference number: 4 (lower is better) Translates to: GKCPQGPARDSIIMKSSKRWPSG*QSARHT Trigger: TGTGTGCCGAGCGGACTGCCATCCAGAAGGCCATCT...CTTGGAAGACTTCATAATGATGCTGTCTCTGGCTGGGCCTTGGGGACACTTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CCA 90 bp | GGACCCATGTGGCAAGTGTCCCCAAGGCCCAGCCAGAGACAGCATCATTATGAAAGTAGGCTGACTTCTTaGCCTCACGAGAGGACAGCA | + |
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Preference number: 4 (lower is better) Translates to: GPMWQVSPRPSQRQHHYESRLTS*PHERTA Trigger: TGCTGTCCTCTCGTGAGGCCAAGAAGTCAGCCTACT...TTCATAATGATGCTGTCTCTGGCTGGGCCTTGGGGACACTTGCCACATGGGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CCA 90 bp | AATCTGAAAAGTCACACGACAGAGCCTAAGAAGGCTGGTAGGGAGGCAGACCGGTGTACCCTTCGGAGATaGCCTTCTGGATGGCAGTCC | + |
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Preference number: 4 (lower is better) Translates to: NLKSHTTEPKKAGREADRCTLRR*PSGWQS Trigger: GGACTGCCATCCAGAAGGCCATCTCCGAAGGGTACA...CCGGTCTGCCTCCCTACCAGCCTTCTTAGGCTCTGTCGTGTGACTTTTCAGATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CCA 90 bp | CCAAGGCCCAGCCAGAGACAGCATCATTATGAAGTCTTCCAAGAGCCGTTCCTTATGTGCCATCCGGCTTaGTCATGTACACGGCCCAGT | + |
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Preference number: 4 (lower is better) Translates to: PRPSQRQHHYEVFQEPFLMCHPA*SCTRPS Trigger: ACTGGGCCGTGTACATGACCAAGCCGGATGGCACAT...AAGGAACGGCTCTTGGAAGACTTCATAATGATGCTGTCTCTGGCTGGGCCTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR GCA 90 bp | CCAAGGCCCAGCCAGAGACAGCATCATTATGAAGTCTTCCAAGAGCCGTTCCTTAGGCGTTTTCTATGTTaGACCCAGAGAAGATCCTCC | + |
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Preference number: 4 (lower is better) Translates to: PRPSQRQHHYEVFQEPFLRRFLC*TQRRSS Trigger: GGAGGATCTTCTCTGGGTGCAACATAGAAAACGCCT...AAGGAACGGCTCTTGGAAGACTTCATAATGATGCTGTCTCTGGCTGGGCCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR GCA 90 bp | TCTGGAATACCCGTGTCTTTGGGAGTGGAAGGAGAGGAGTGCTCTGAGTCCCCAGAGATGAACTCTTCTTaGAAGTCACTAGAGATGGCA | + |
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Preference number: 4 (lower is better) Translates to: SGIPVSLGVEGEECSESPEMNSS*KSLEMA Trigger: TGCCATCTCTAGTGACTTGCAAGAAGAGTTCATCTC...TGGGGACTCAGAGCACTCCTCTCCTTCCACTCCCAAAGACACGGGTATTCCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS TCA 90 bp | GAGCAGGGCAGCCCCCACAGGGAAGCGGCTGTAGGGGCAGTAGGCTaGCTTCTTGGCCTCACGAGAGGACAGCAGCAGCCGCTGGACGTG | + |
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Preference number: 5 (lower is better) Translates to: EQGSPHREAAVGAVG*LLGLTRGQQQPLDV Trigger: CACGTCCAGCGGCTGCTGCTGTCCTCTCGTGAGGCCAAGAAGTCAGCCTACTGCCCCTACAGCCGCTTCCCTGTGGGGGCTGCCCTGCTC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CCA 90 bp | CAGCCCCCACAGGGAAGCGGCTGTAGGGGCAGTAGGCTGACTTCTTaGCCTCACGAGAGGACAGCAGCAGCCGCTGGACGTGCTCGGGCT | + |
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Preference number: 5 (lower is better) Translates to: QPPQGSGCRGSRLTS*PHERTAAAAGRARA Trigger: AGCCCGAGCACGTCCAGCGGCTGCTGCTGTCCTCTCGTGAGGCCAAGAAGTCAGCCTACTGCCCCTACAGCCGCTTCCCTGTGGGGGCTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS TCA 90 bp | GGTCTTCAGGTCCAAACGAGGCCGGCAGCAGCTCCTGGACCGTCCTaGCTACGAATGTGCCATCCGGCTTGGTCATGTACACGGCCCAGT | + |
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Preference number: 5 (lower is better) Translates to: GLQVQTRPAAAPGPS*LRMCHPAWSCTRPS Trigger: ACTGGGCCGTGTACATGACCAAGCCGGATGGCACATTCGTAGTCAGGACGGTCCAGGAGCTGCTGCCGGCCTCGTTTGGACCTGAAGACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CCA 90 bp | ATCTTCTGCAGGTCTTCAGGTCCAAACGAGGCCGGCAGCAGCTCCTaGACCGTCCTGACTACGAATGTGCCATCCGGCTTGGTCATGTAC | + |
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Preference number: 5 (lower is better) Translates to: IFCRSSGPNEAGSSS*TVLTTNVPSGLVMY Trigger: GTACATGACCAAGCCGGATGGCACATTCGTAGTCAGGACGGTCCAGGAGCTGCTGCCGGCCTCGTTTGGACCTGAAGACCTGCAGAAGAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CAA 90 bp | CCATTTGGGACCCATGTGGCAAGTGTCCCCAAGGCCCAGCCAGAGACAGCATCAATAGCCCTGAAATCCTaGTACCCTTCGGAGATGGCC | + |
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Preference number: 5 (lower is better) Translates to: PFGTHVASVPKAQPETASIALKS*YPSEMA Trigger: GGCCATCTCCGAAGGGTACAAGGATTTCAGGGCTAT...TGATGCTGTCTCTGGCTGGGCCTTGGGGACACTTGCCACATGGGTCCCAAATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CAA 90 bp | CCAAGGCCCAGCCAGAGACAGCATCATTATGAAGTCTTCCAAGAGCCGTTCCTTAATGTGCCATCCGGCTaGGTCATGTACACGGCCCAG | + |
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Preference number: 5 (lower is better) Translates to: PRPSQRQHHYEVFQEPFLNVPSG*VMYTAQ Trigger: CTGGGCCGTGTACATGACCAAGCCGGATGGCACATT...AAGGAACGGCTCTTGGAAGACTTCATAATGATGCTGTCTCTGGCTGGGCCTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CAA 90 bp | GAGTGGCACCTTCCATCACTCAAGGGGAGGCTGTGGTGTGTGAATCAAGGTCACCAGGCGTTTTCTATGTaGCACCCAGAGAAGATCCTC | + |
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Preference number: 5 (lower is better) Translates to: EWHLPSLKGRLWCVNQGHQAFSM*HPEKIL Trigger: GAGGATCTTCTCTGGGTGCAACATAGAAAACGCCTG...GTGACCTTGATTCACACACCACAGCCTCCCCTTGAGTGATGGAAGGTGCCACTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS-3UTR CAA 90 bp | CAAGTGTCCCCAAGGCCCAGCCAGAGACAGCATCATTATGAAGTCTTCCAAGAGAAACTCTCTCATGACTaGTCGGCAGGCTCCACAGGG | + |
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Preference number: 5 (lower is better) Translates to: QVSPRPSQRQHHYEVFQEKLSHD*SAGSTG Trigger: CCCTGTGGAGCCTGCCGACAAGTCATGAGAGAGTTT...CTCTTGGAAGACTTCATAATGATGCTGTCTCTGGCTGGGCCTTGGGGACACTTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS GCA 72 bp | TTGGCCTCACGAGAGGACAGCAGCAGCCGCTGGACGTaGTCGGGCTCCACAGCACAGGAGGGGCGTTCCTGG | + |
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Preference number: 6 (lower is better) Translates to: LASREDSSSRWT*SGSTAQEGRSW Trigger: CCAGGAACGCCCCTCCTGTGCTGTGGAGCCCGAGCACGTCCAGCGGCTGCTGCTGTCCTCTCGTGAGGCCAA 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CCA 72 bp | CAGGGAAGCGGCTGTAGGGGCAGTAGGCTGACTTCTTaGCCTCACGAGAGGACAGCAGCAGCCGCTGGACGT | + |
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Preference number: 6 (lower is better) Translates to: QGSGCRGSRLTS*PHERTAAAAGR Trigger: ACGTCCAGCGGCTGCTGCTGTCCTCTCGTGAGGCCAAGAAGTCAGCCTACTGCCCCTACAGCCGCTTCCCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CCA 72 bp | AGGTCTTCAGGTCCAAACGAGGCCGGCAGCAGCTCCTaGACCGTCCTGACTACGAATGTGCCATCCGGCTTG | + |
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Preference number: 6 (lower is better) Translates to: RSSGPNEAGSSS*TVLTTNVPSGL Trigger: CAAGCCGGATGGCACATTCGTAGTCAGGACGGTCCAGGAGCTGCTGCCGGCCTCGTTTGGACCTGAAGACCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS TCA 72 bp | GTCCAAACGAGGCCGGCAGCAGCTCCTGGACCGTCCTaGCTACGAATGTGCCATCCGGCTTGGTCATGTACA | + |
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Preference number: 6 (lower is better) Translates to: VQTRPAAAPGPS*LRMCHPAWSCT Trigger: TGTACATGACCAAGCCGGATGGCACATTCGTAGTCAGGACGGTCCAGGAGCTGCTGCCGGCCTCGTTTGGAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CCA 72 bp | GCCCTGAAATCCTTGTACCCTTCGGAGATGGCCTTCTaGATGGCAGTCCGCTCGGCACACACACCTAGTGGG | + |
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Preference number: 6 (lower is better) Translates to: ALKSLYPSEMAF*MAVRSAHTPSG Trigger: CCCACTAGGTGTGTGTGCCGAGCGGACTGCCATCCAGAAGGCCATCTCCGAAGGGTACAAGGATTTCAGGGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CAA 90 bp | GGCAGCAGCTCCTGGACCGTCCTGACTACGAATGTGCCATCCGGCTaGGTCATGTACACGGCCCAGTCGGTGCCAAACTCTCTCATGACT | + |
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Preference number: 6 (lower is better) Translates to: GSSSWTVLTTNVPSG*VMYTAQSVPNSLMT Trigger: AGTCATGAGAGAGTTTGGCACCGACTGGGCCGTGTACATGACCAAGCCGGATGGCACATTCGTAGTCAGGACGGTCCAGGAGCTGCTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CAA 72 bp | TCCTGGACCGTCCTGACTACGAATGTGCCATCCGGCTaGGTCATGTACACGGCCCAGTCGGTGCCAAACTCT | + |
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Preference number: 6 (lower is better) Translates to: SWTVLTTNVPSG*VMYTAQSVPNS Trigger: AGAGTTTGGCACCGACTGGGCCGTGTACATGACCAAGCCGGATGGCACATTCGTAGTCAGGACGGTCCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CAA 72 bp | GTACACGGCCCAGTCGGTGCCAAACTCTCTCATGACTaGTCGGCAGGCTCCACAGGGAGAGATGAACTCTTC | + |
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Preference number: 6 (lower is better) Translates to: VHGPVGAKLSHD*SAGSTGRDELF Trigger: GAAGAGTTCATCTCTCCCTGTGGAGCCTGCCGACAAGTCATGAGAGAGTTTGGCACCGACTGGGCCGTGTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CAA 90 bp | AACTCTTCTTGCAAGTCACTAGAGATGGCAATAGCCCTGAAATCCTaGTACCCTTCGGAGATGGCCTTCTGGATGGCAGTCCGCTCGGCA | + |
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Preference number: 6 (lower is better) Translates to: NSSCKSLEMAIALKS*YPSEMAFWMAVRSA Trigger: TGCCGAGCGGACTGCCATCCAGAAGGCCATCTCCGAAGGGTACAAGGATTTCAGGGCTATTGCCATCTCTAGTGACTTGCAAGAAGAGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CAA 72 bp | TGCAAGTCACTAGAGATGGCAATAGCCCTGAAATCCTaGTACCCTTCGGAGATGGCCTTCTGGATGGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: CKSLEMAIALKS*YPSEMAFWMAV Trigger: GACTGCCATCCAGAAGGCCATCTCCGAAGGGTACAAGGATTTCAGGGCTATTGCCATCTCTAGTGACTTGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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| CDS CAA 72 bp | TTGTCGGCAGGCTCCACAGGGAGAGATGAACTCTTCTaGCAAGTCACTAGAGATGGCAATAGCCCTGAAATC | + |
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Preference number: 6 (lower is better) Translates to: LSAGSTGRDELF*QVTRDGNSPEI Trigger: GATTTCAGGGCTATTGCCATCTCTAGTGACTTGCAAGAAGAGTTCATCTCTCCCTGTGGAGCCTGCCGACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030535.4 |
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