Pregenerated sensors for CD8B1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000053044Ensembl transcript IDs: ENSMUST00000065248.9
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGGAGTTCTTGGTTCTTCAGCCACTCTGTGAGTGAGCTTGGGTTCTaGGGCCTTCCCTGTGAGACCCCAGACCACACACAGAGCTTGCAG | + |
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Preference number: 1 (lower is better) Translates to: GSSWFFSHSVSELGF*GLPCETPDHTQSLQ Trigger: CTGCAAGCTCTGTGTGTGGTCTGGGGTCTCACAGGGAAGGCCCCAGAACCCAAGCTCACTCACAGAGTGGCTGAAGAACCAAGAACTCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CCA 90 bp | GCTGGAAGGCCACTGTCCAAGGCCCAGTCCAAGAAGAGTACATGGTaGTGTGGGAGTTCTTGGTTCTTCAGCCACTCTGTGAGTGAGCTT | + |
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Preference number: 1 (lower is better) Translates to: AGRPLSKAQSKKSTW*CGSSWFFSHSVSEL Trigger: AAGCTCACTCACAGAGTGGCTGAAGAACCAAGAACTCCCACACCACCATGTACTCTTCTTGGACTGGGCCTTGGACAGTGGCCTTCCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CCA 90 bp | GAGTCAATAAGGCTGTCATACCAAGCAACTGACAAAGACAGTGGCTaGAAGGCCACTGTCCAAGGCCCAGTCCAAGAAGAGTACATGGTG | + |
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Preference number: 1 (lower is better) Translates to: ESIRLSYQATDKDSG*KATVQGPVQEEYMV Trigger: CACCATGTACTCTTCTTGGACTGGGCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTCAGTTGCTTGGTATGACAGCCTTATTGACTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CCA 90 bp | GTGGCTTCTCTGTGTGAGGATTTGCAGTCTTCTCCAGGGTCCCGGCTAGCTCTTGACAAAGACAGTGGCTaGAAGGCCACTGTCCAAGGC | + |
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Preference number: 2 (lower is better) Translates to: VASLCEDLQSSPGSRLALDKDSG*KATVQG Trigger: GCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTC...AAGAGCTAGCCGGGACCCTGGAGAAGACTGCAAATCCTCACACAGAGAAGCCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR TCA 90 bp | TGGCTGCTGAGAGCCCTGAAACTGTTTGCAGAAAACTTTATTCATGAGGTGGCTCTGGGGCCTTCCCTGTaGGACCCCAGACCACACACA | + |
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Preference number: 2 (lower is better) Translates to: WLLRALKLFAENFIHEVALGPSL*DPRPHT Trigger: TGTGTGTGGTCTGGGGTCTCACAGGGAAGGCCCCAG...AGCCACCTCATGAATAAAGTTTTCTGCAAACAGTTTCAGGGCTCTCAGCAGCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CCA 90 bp | ACTGACAAAGACAGTGGCTGGAAGGCCACTGTCCAAGGCCCAGTCCAAGAAGAGTGGTGTGGGAGTTCTTaGTTCTTCAGCCACTCTGTG | + |
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Preference number: 2 (lower is better) Translates to: TDKDSGWKATVQGPVQEEWCGSS*FFSHSV Trigger: CACAGAGTGGCTGAAGAACCAAGAACTCCCACACCA...CTCTTCTTGGACTGGGCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CCA 90 bp | CATACCAAGCAACTGACAAAGACAGTGGCTGGAAGGCCACTGTCCAAGGCCCAGGAGTACATGGTGGTGTaGGAGTTCTTGGTTCTTCAG | + |
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Preference number: 2 (lower is better) Translates to: HTKQLTKTVAGRPLSKAQEYMVV*EFLVLQ Trigger: CTGAAGAACCAAGAACTCCCACACCACCATGTACTC...CTGGGCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTCAGTTGCTTGGTATG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CCA 90 bp | CATACCAAGCAACTGACAAAGACAGTGGCTGGAAGGCCACTGTCCAAGGCCCAGAAGAAGAGTACATGGTaGTGTGGGAGTTCTTGGTTC | + |
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Preference number: 2 (lower is better) Translates to: HTKQLTKTVAGRPLSKAQKKSTW*CGSSWF Trigger: GAACCAAGAACTCCCACACCACCATGTACTCTTCTT...CTGGGCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTCAGTTGCTTGGTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CCA 90 bp | GGAGATGAAGTAGAAGTCTGTCTCCTGAGCCAACAGCCTCCCAAACCCACGGCAACTTTATTCATGAGGTaGCTTCTCTGTGTGAGGATT | + |
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Preference number: 2 (lower is better) Translates to: GDEVEVCLLSQQPPKPTATLFMR*LLCVRI Trigger: AATCCTCACACAGAGAAGCCACCTCATGAATAAAGT...TGCCGTGGGTTTGGGAGGCTGTTGGCTCAGGAGACAGACTTCTACTTCATCTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR GCA 90 bp | CTGAAACTGTTTGCAGAAAACTTTATTCATGAGGTGGCTTCTCTGTGTGAGGATACCACACACAGAGCTTaGAGCAGTTCAAAGCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: LKLFAENFIHEVASLCEDTTHRA*SSSKQA Trigger: TGCCTGCTTTGAACTGCTGCAAGCTCTGTGTGTGGT...ATCCTCACACAGAGAAGCCACCTCATGAATAAAGTTTTCTGCAAACAGTTTCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR TCA 72 bp | CCTGAGCCAACAGCCTCCCAAACCCACGGCAAGGCCTaGGAGAGTAAGATGGCTGCTGAGAGCCCTGAAACT | + |
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Preference number: 3 (lower is better) Translates to: PEPTASQTHGKA*ESKMAAESPET Trigger: AGTTTCAGGGCTCTCAGCAGCCATCTTACTCTCTCAGGCCTTGCCGTGGGTTTGGGAGGCTGTTGGCTCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CCA 72 bp | TGGTTCTTCAGCCACTCTGTGAGTGAGCTTGGGTTCTaGGGCCTTCCCTGTGAGACCCCAGACCACACACAG | + |
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Preference number: 3 (lower is better) Translates to: WFFSHSVSELGF*GLPCETPDHTQ Trigger: CTGTGTGTGGTCTGGGGTCTCACAGGGAAGGCCCCAGAACCCAAGCTCACTCACAGAGTGGCTGAAGAACCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CAA 90 bp | ACTGACAAAGACAGTGGCTGGAAGGCCACTGTCCAAGGCCCAGTCCAAGAAGAGTTCAAAGCAGGCAGCTaGAGCAAGGGCAAGGGCCTC | + |
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Preference number: 3 (lower is better) Translates to: TDKDSGWKATVQGPVQEEFKAGS*SKGKGL Trigger: GAGGCCCTTGCCCTTGCTCAAGCTGCCTGCTTTGAA...CTCTTCTTGGACTGGGCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTCAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CCA 72 bp | AGGCCACTGTCCAAGGCCCAGTCCAAGAAGAGTACATaGTGGTGTGGGAGTTCTTGGTTCTTCAGCCACTCT | + |
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Preference number: 3 (lower is better) Translates to: RPLSKAQSKKST*WCGSSWFFSHS Trigger: AGAGTGGCTGAAGAACCAAGAACTCCCACACCACCATGTACTCTTCTTGGACTGGGCCTTGGACAGTGGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CCA 72 bp | AGGCTGTCATACCAAGCAACTGACAAAGACAGTGGCTaGAAGGCCACTGTCCAAGGCCCAGTCCAAGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: RLSYQATDKDSG*KATVQGPVQEE Trigger: CTCTTCTTGGACTGGGCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTCAGTTGCTTGGTATGACAGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CCA 72 bp | CCTCCCAAACCCACGGCAAGGCCTGAGAGAGTAAGATaGCTGCTGAGAGCCCTGAAACTGTTTGCAGAAAAC | + |
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Preference number: 3 (lower is better) Translates to: PPKPTARPERVR*LLRALKLFAEN Trigger: GTTTTCTGCAAACAGTTTCAGGGCTCTCAGCAGCCATCTTACTCTCTCAGGCCTTGCCGTGGGTTTGGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR TCA 72 bp | AGGCAGCTTGAGCAAGGGCAAGGGCCTCTCCAGTCTTaGATGCGCTGTCTCTCACTAGTTCAAATCTTGCTT | + |
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Preference number: 3 (lower is better) Translates to: RQLEQGQGPLQS*MRCLSLVQILL Trigger: AAGCAAGATTTGAACTAGTGAGAGACAGCGCATTCAAGACTGGAGAGGCCCTTGCCCTTGCTCAAGCTGCCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CCA 72 bp | CAGTCCAAGAAGAGTACATGGTGGTGTGGGAGTTCTTaGTTCTTCAGCCACTCTGTGAGTGAGCTTGGGTTC | + |
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Preference number: 3 (lower is better) Translates to: QSKKSTWWCGSS*FFSHSVSELGF Trigger: GAACCCAAGCTCACTCACAGAGTGGCTGAAGAACCAAGAACTCCCACACCACCATGTACTCTTCTTGGACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CAA 90 bp | CTGAAACTGTTTGCAGAAAACTTTATTCATGAGGTGGCTTCTCTGTGTGAGGATAGGGCCTCTCCAGTCTaGAATGCGCTGTCTCTCACT | + |
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Preference number: 3 (lower is better) Translates to: LKLFAENFIHEVASLCEDRASPV*NALSLT Trigger: AGTGAGAGACAGCGCATTCAAGACTGGAGAGGCCCT...ATCCTCACACAGAGAAGCCACCTCATGAATAAAGTTTTCTGCAAACAGTTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR-3UTR CAA 90 bp | CTGAAACTGTTTGCAGAAAACTTTATTCATGAGGTGGCTTCTCTGTGTGAGGATGACCACACACAGAGCTaGCAGCAGTTCAAAGCAGGC | + |
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Preference number: 3 (lower is better) Translates to: LKLFAENFIHEVASLCEDDHTQS*QQFKAG Trigger: GCCTGCTTTGAACTGCTGCAAGCTCTGTGTGTGGTC...ATCCTCACACAGAGAAGCCACCTCATGAATAAAGTTTTCTGCAAACAGTTTCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CCA 90 bp | GGAGATGAAGTAGAAGTCTGTCTCCTGAGCCAACAGCCTCCCAAACCCACGGCAGCCCTTCTGGGTCTCTaGGTGGGGGAACGGGCATTG | + |
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Preference number: 4 (lower is better) Translates to: GDEVEVCLLSQQPPKPTAALLGL*VGERAL Trigger: CAATGCCCGTTCCCCCACCCAGAGACCCAGAAGGGC...TGCCGTGGGTTTGGGAGGCTGTTGGCTCAGGAGACAGACTTCTACTTCATCTCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CCA 90 bp | GGAGATGAAGTAGAAGTCTGTCTCCTGAGCCAACAGCCTCCCAAACCCACGGCATTCTGGGTCTCTGGGTaGGGGAACGGGCATTGCTTC | + |
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Preference number: 4 (lower is better) Translates to: GDEVEVCLLSQQPPKPTAFWVSG*GNGHCF Trigger: GAAGCAATGCCCGTTCCCCCACCCAGAGACCCAGAA...TGCCGTGGGTTTGGGAGGCTGTTGGCTCAGGAGACAGACTTCTACTTCATCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CCA 90 bp | TGGCTGCTGAGAGCCCTGAAACTGTTTGCAGAAAACTTTATTCATGAGGTGGCTCATGTCAGGCCCTTCTaGGTCTCTGGGTGGGGGAAC | + |
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Preference number: 4 (lower is better) Translates to: WLLRALKLFAENFIHEVAHVRPF*VSGWGN Trigger: GTTCCCCCACCCAGAGACCCAGAAGGGCCTGACATG...AGCCACCTCATGAATAAAGTTTTCTGCAAACAGTTTCAGGGCTCTCAGCAGCCA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CCA 90 bp | GTGGCTTCTCTGTGTGAGGATTTGCAGTCTTCTCCAGGGTCCCGGCTAGCTCTTGAAGTCACTGTCCTCTaGCTTCACATTCATGATACT | + |
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Preference number: 4 (lower is better) Translates to: VASLCEDLQSSPGSRLALEVTVL*LHIHDT Trigger: AGTATCATGAATGTGAAGCCAGAGGACAGTGACTTC...AAGAGCTAGCCGGGACCCTGGAGAAGACTGCAAATCCTCACACAGAGAAGCCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR TCA 90 bp | CTGAAACTGTTTGCAGAAAACTTTATTCATGAGGTGGCTTCTCTGTGTGAGGATAGGGACGAAGGGGTCTaGATGAGGGCAGAGCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: LKLFAENFIHEVASLCEDRDEGV*MRAELL Trigger: GAGCAGCTCTGCCCTCATTCAGACCCCTTCGTCCCT...ATCCTCACACAGAGAAGCCACCTCATGAATAAAGTTTTCTGCAAACAGTTTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| 3UTR CAA 72 bp | AACTTTATTCATGAGGTGGCTTCTCTGTGTGAGGATTaGCAGTCTTCTCCAGGGTCCCGGCTAGCTCTTTTC | + |
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Preference number: 4 (lower is better) Translates to: NFIHEVASLCED*QSSPGSRLALF Trigger: GAAAAGAGCTAGCCGGGACCCTGGAGAAGACTGCAAATCCTCACACAGAGAAGCCACCTCATGAATAAAGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR TCA 90 bp | ATAAGCCACGAGAGAGAAGAAGTGAAGCTTAGAAACTTCCTACTAGGAGATGAAACGAAGGGGTCTGAATaGGGGCAGAGCTGCTCCAGA | + |
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Preference number: 4 (lower is better) Translates to: ISHEREEVKLRNFLLGDETKGSE*GQSCSR Trigger: TCTGGAGCAGCTCTGCCCTCATTCAGACCCCTTCGT...TTCATCTCCTAGTAGGAAGTTTCTAAGCTTCACTTCTTCTCTCTCGTGGCTTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR TCA 90 bp | ATAAGCCACGAGAGAGAAGAAGTGAAGCTTAGAAACTTCCTACTAGGAGATGAACTGCCAGCTTCATACTaGAGACCAGCCAGAGCCATG | + |
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Preference number: 4 (lower is better) Translates to: ISHEREEVKLRNFLLGDELPASY*RPARAM Trigger: CATGGCTCTGGCTGGTCTTCAGTATGAAGCTGGCAG...TTCATCTCCTAGTAGGAAGTTTCTAAGCTTCACTTCTTCTCTCTCGTGGCTTAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR GCA 90 bp | AAATATATAAGCCACGAGAGAGAAGAAGTGAAGCTTAGAAACTTCCTACTAGGAGGCCACTCCGAGGAATaGCAGCAGAAGCAGGATGCA | + |
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Preference number: 4 (lower is better) Translates to: KYISHEREEVKLRNFLLGGHSEE*QQKQDA Trigger: TGCATCCTGCTTCTGCTGGCATTCCTCGGAGTGGCC...TCCTAGTAGGAAGTTTCTAAGCTTCACTTCTTCTCTCTCGTGGCTTATATATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR GCA 90 bp | CTGAAACTGTTTGCAGAAAACTTTATTCATGAGGTGGCTTCTCTGTGTGAGGATTGGGGGAACGGGCATTaGTTCTTCTTCTTCATCTTC | + |
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Preference number: 4 (lower is better) Translates to: LKLFAENFIHEVASLCEDWGNGH*FFFFIF Trigger: GAAGATGAAGAAGAAGAAGCAATGCCCGTTCCCCCA...ATCCTCACACAGAGAAGCCACCTCATGAATAAAGTTTTCTGCAAACAGTTTCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CCA 90 bp | AAATATATAAGCCACGAGAGAGAAGAAGTGAAGCTTAGAAACTTCCTACTAGGACATACAAAACTCCTTTaGAAGAACTCCAGGAGGCCA | + |
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Preference number: 4 (lower is better) Translates to: KYISHEREEVKLRNFLLGHTKLL*KNSRRP Trigger: TGGCCTCCTGGAGTTCTTCCAAAGGAGTTTTGTATG...TCCTAGTAGGAAGTTTCTAAGCTTCACTTCTTCTCTCTCGTGGCTTATATATTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS GCA 90 bp | GGCTCTCCTCCGCACACAGTAAAAGTAGACGGCCACTCCGAGGAATaGCAGCAGAAGCAGGATGCAGACTACCAGCAGGCTGAGGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: GSPPHTVKVDGHSEE*QQKQDADYQQAEGG Trigger: ACCACCCTCAGCCTGCTGGTAGTCTGCATCCTGCTTCTGCTGGCATTCCTCGGAGTGGCCGTCTACTTTTACTGTGTGCGGAGGAGAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CAA 90 bp | CAACTGACAAAGACAGTGGCTGGAAGGCCACTGTCCAAGGCCCAGTCCAAGAAGGTCCCAAAGACCATCTaGGGGCTCCCAACCGTCGCG | + |
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Preference number: 5 (lower is better) Translates to: QLTKTVAGRPLSKAQSKKVPKTI*GLPTVA Trigger: CGCGACGGTTGGGAGCCCCAAGATGGTCTTTGGGAC...CTTCTTGGACTGGGCCTTGGACAGTGGCCTTCCAGCCACTGTCTTTGTCAGTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CCA 90 bp | ACTACCAGCAGGCTGAGGGTGGTAAGGCTGCATGTCAGGCCCTTCTaGGTCTCTGGGTGGGGGAACGGGCATTGCTTCTTCTTCTTCATC | + |
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Preference number: 5 (lower is better) Translates to: TTSRLRVVRLHVRPF*VSGWGNGHCFFFFI Trigger: GATGAAGAAGAAGAAGCAATGCCCGTTCCCCCACCCAGAGACCCAGAAGGGCCTGACATGCAGCCTTACCACCCTCAGCCTGCTGGTAGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CCA 90 bp | CTGAGGGTGGTAAGGCTGCATGTCAGGCCCTTCTGGGTCTCTGGGTaGGGGAACGGGCATTGCTTCTTCTTCTTCATCTTCAGGGTAGTC | + |
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Preference number: 5 (lower is better) Translates to: LRVVRLHVRPFWVSG*GNGHCFFFFIFRVV Trigger: GACTACCCTGAAGATGAAGAAGAAGAAGCAATGCCCGTTCCCCCACCCAGAGACCCAGAAGGGCCTGACATGCAGCCTTACCACCCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS GCA 90 bp | CTGCATGTCAGGCCCTTCTGGGTCTCTGGGTGGGGGAACGGGCATTaGTTCTTCTTCTTCATCTTCAGGGTAGTCTTCTTGGTTGGGGCA | + |
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Preference number: 5 (lower is better) Translates to: LHVRPFWVSGWGNGH*FFFFIFRVVFLVGA Trigger: TGCCCCAACCAAGAAGACTACCCTGAAGATGAAGAAGAAGAAGCAATGCCCGTTCCCCCACCCAGAGACCCAGAAGGGCCTGACATGCAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CAA 90 bp | GGAGATGAAGTAGAAGTCTGTCTCCTGAGCCAACAGCCTCCCAAACCCACGGCAGTGGGGGAACGGGCATaGCTTCTTCTTCTTCATCTT | + |
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Preference number: 5 (lower is better) Translates to: GDEVEVCLLSQQPPKPTAVGERA*LLLLHL Trigger: AAGATGAAGAAGAAGAAGCAATGCCCGTTCCCCCAC...TGCCGTGGGTTTGGGAGGCTGTTGGCTCAGGAGACAGACTTCTACTTCATCTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CCA 90 bp | CGGGCATTGCTTCTTCTTCTTCATCTTCAGGGTAGTCTTCTTGGTTaGGGCAGTTGTAGGAAGGACATCAACCACAGTCAGCTTCGTCCC | + |
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Preference number: 5 (lower is better) Translates to: RALLLLLHLQGSLLG*GSCRKDINHSQLRP Trigger: GGGACGAAGCTGACTGTGGTTGATGTCCTTCCTACAACTGCCCCAACCAAGAAGACTACCCTGAAGATGAAGAAGAAGAAGCAATGCCCG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS-3UTR CAA 90 bp | AAATATATAAGCCACGAGAGAGAAGAAGTGAAGCTTAGAAACTTCCTACTAGGACCATACAAAACTCCTTaGGAAGAACTCCAGGAGGCC | + |
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Preference number: 5 (lower is better) Translates to: KYISHEREEVKLRNFLLGPYKTP*EELQEA Trigger: GGCCTCCTGGAGTTCTTCCAAAGGAGTTTTGTATGG...TCCTAGTAGGAAGTTTCTAAGCTTCACTTCTTCTCTCTCGTGGCTTATATATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CCA 90 bp | TTATATTTCTTTTCTTGTCCACACTTTCACCATACAAAACTCCTTTaGAAGAACTCCAGGAGGCCAGGAACTCAAAGTACTTGTCCTTGG | + |
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Preference number: 5 (lower is better) Translates to: LYFFSCPHFHHTKLL*KNSRRPGTQSTCPW Trigger: CCAAGGACAAGTACTTTGAGTTCCTGGCCTCCTGGAGTTCTTCCAAAGGAGTTTTGTATGGTGAAAGTGTGGACAAGAAAAGAAATATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS GCA 72 bp | CCGCACACAGTAAAAGTAGACGGCCACTCCGAGGAATaGCAGCAGAAGCAGGATGCAGACTACCAGCAGGCT | + |
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Preference number: 6 (lower is better) Translates to: PHTVKVDGHSEE*QQKQDADYQQA Trigger: AGCCTGCTGGTAGTCTGCATCCTGCTTCTGCTGGCATTCCTCGGAGTGGCCGTCTACTTTTACTGTGTGCGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CCA 72 bp | GGTGGTAAGGCTGCATGTCAGGCCCTTCTGGGTCTCTaGGTGGGGGAACGGGCATTGCTTCTTCTTCTTCAT | + |
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Preference number: 6 (lower is better) Translates to: GGKAACQALLGL*VGERALLLLLH Trigger: ATGAAGAAGAAGAAGCAATGCCCGTTCCCCCACCCAGAGACCCAGAAGGGCCTGACATGCAGCCTTACCACC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CCA 72 bp | GTAAGGCTGCATGTCAGGCCCTTCTGGGTCTCTGGGTaGGGGAACGGGCATTGCTTCTTCTTCTTCATCTTC | + |
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Preference number: 6 (lower is better) Translates to: VRLHVRPFWVSG*GNGHCFFFFIF Trigger: GAAGATGAAGAAGAAGAAGCAATGCCCGTTCCCCCACCCAGAGACCCAGAAGGGCCTGACATGCAGCCTTAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS GCA 72 bp | AGGCCCTTCTGGGTCTCTGGGTGGGGGAACGGGCATTaGTTCTTCTTCTTCATCTTCAGGGTAGTCTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: RPFWVSGWGNGH*FFFFIFRVVFL Trigger: CAAGAAGACTACCCTGAAGATGAAGAAGAAGAAGCAATGCCCGTTCCCCCACCCAGAGACCCAGAAGGGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CAA 90 bp | GGGAACGGGCATTGCTTCTTCTTCTTCATCTTCAGGGTAGTCTTCTaGGTTGGGGCAGTTGTAGGAAGGACATCAACCACAGTCAGCTTC | + |
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Preference number: 6 (lower is better) Translates to: GNGHCFFFFIFRVVF*VGAVVGRTSTTVSF Trigger: GAAGCTGACTGTGGTTGATGTCCTTCCTACAACTGCCCCAACCAAGAAGACTACCCTGAAGATGAAGAAGAAGAAGCAATGCCCGTTCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CCA 72 bp | CTTCTTCTTCTTCATCTTCAGGGTAGTCTTCTTGGTTaGGGCAGTTGTAGGAAGGACATCAACCACAGTCAG | + |
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Preference number: 6 (lower is better) Translates to: LLLLHLQGSLLG*GSCRKDINHSQ Trigger: CTGACTGTGGTTGATGTCCTTCCTACAACTGCCCCAACCAAGAAGACTACCCTGAAGATGAAGAAGAAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CAA 72 bp | CATTGCTTCTTCTTCTTCATCTTCAGGGTAGTCTTCTaGGTTGGGGCAGTTGTAGGAAGGACATCAACCACA | + |
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Preference number: 6 (lower is better) Translates to: HCFFFFIFRVVF*VGAVVGRTSTT Trigger: TGTGGTTGATGTCCTTCCTACAACTGCCCCAACCAAGAAGACTACCCTGAAGATGAAGAAGAAGAAGCAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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| CDS CAA 90 bp | ATTATATTTCTTTTCTTGTCCACACTTTCACCATACAAAACTCCTTaGGAAGAACTCCAGGAGGCCAGGAACTCAAAGTACTTGTCCTTG | + |
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Preference number: 6 (lower is better) Translates to: IIFLFLSTLSPYKTP*EELQEARNSKYLSL Trigger: CAAGGACAAGTACTTTGAGTTCCTGGCCTCCTGGAGTTCTTCCAAAGGAGTTTTGTATGGTGAAAGTGTGGACAAGAAAAGAAATATAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000065248.9 |
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