RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD83 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000015396

Ensembl transcript IDs: ENSMUST00000015540.4

Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGTGATCATATGATGGTGCTCAAGACCCTGTGTCAGGGAGTAGTGTaGAGCCCACTGTCAGGTGAAGGACTTCAAAGAAAGGTTGCCATC +
Preference number: 1 (lower is better)
Translates to: RDHMMVLKTLCQGVV*SPLSGEGLQRKVAI
Trigger: GATGGCAACCTTTCTTTGAAGTCCTTCACCTGACAGTGGGCTCCACACTACTCCCTGACACAGGGTCTTGAGCACCATCATATGATCACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CCA 90 bp GTAAGCACGCTGTATCTGCTCAGCATCCCTTTTACTTTCATAGTGTaGGTGATGGGCACACCATTAGTGGGACAAAATCTCTTTGGGAAG +
Preference number: 1 (lower is better)
Translates to: VSTLYLLSIPFTFIV*VMGTPLVGQNLFGK
Trigger: CTTCCCAAAGAGATTTTGTCCCACTAATGGTGTGCCCATCACCCACACTATGAAAGTAAAAGGGATGCTGAGCAGATACAGCGTGCTTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CCA 90 bp CAACAATGTTACATCAATGCAACATCTGAGAACTTCCTCCTGTCGTaGCGCAATAGCTCCCCTAGGTCCATATCTTCAAGAACTTGTGAT +
Preference number: 1 (lower is better)
Translates to: QQCYINATSENFLLS*RNSSPRSISSRTCD
Trigger: ATCACAAGTTCTTGAAGATATGGACCTAGGGGAGCTATTGCGCCACGACAGGAGGAAGTTCTCAGATGTTGCATTGATGTAACATTGTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp TTGTGGCCAGACTTCTGGTTTCTCAGTCCATTGTCTGCCCTTCCCAGCAGGGCAGAGCCCACTGTCAGGTaGAGGACTTCAAAGAAAGGT +
Preference number: 2 (lower is better)
Translates to: LWPDFWFLSPLSALPSRAEPTVR*RTSKKG
Trigger: ACCTTTCTTTGAAGTCCTTCACCTGACAGTGGGCTC...TGCCCTGCTGGGAAGGGCAGACAATGGACTGAGAAACCAGAAGTCTGGCCACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CAA 90 bp ATCATACAGACAATCTTGTGGCCAGACTTCTGGTTTCTCAGTCCATaGTCTGCCCTTCCCAGCAGGGCACTGTACAGTGCTTCTAGCTTG +
Preference number: 2 (lower is better)
Translates to: IIQTILWPDFWFLSP*SALPSRALYSASSL
Trigger: CAAGCTAGAAGCACTGTACAGTGCCCTGCTGGGAAGGGCAGACAATGGACTGAGAAACCAGAAGTCTGGCCACAAGATTGTCTGTATGAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR CCA 90 bp ACATCAATGCAACATCTGAGAACTTCCTCCTGTCGTGGCGCAATAGCTCCCCTAGTAGCCTCCTGTGTTTaGATTGATGGGCAAGCTGAG +
Preference number: 2 (lower is better)
Translates to: TSMQHLRTSSCRGAIAPLVASCV*IDGQAE
Trigger: CTCAGCTTGCCCATCAATCCAAACACAGGAGGCTAC...TAGGGGAGCTATTGCGCCACGACAGGAGGAAGTTCTCAGATGTTGCATTGATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp ACTTCTGGTTTCTCAGTCCATTGTCTGCCCTTCCCAGCAGGGCACTGTACAGTGTTGCTGTCCCTATTTTaGGGAACATTCTCCATCTTC +
Preference number: 2 (lower is better)
Translates to: TSGFSVHCLPFPAGHCTVLLSLF*GTFSIF
Trigger: GAAGATGGAGAATGTTCCTCAAAATAGGGACAGCAA...CACTGTACAGTGCCCTGCTGGGAAGGGCAGACAATGGACTGAGAAACCAGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp CCAGATGTGAGACATCTGGGCTGGTGCAACGAAACAGGACAAATTCAAAGAGATTCAGGCACACTGATCTaGTGTGCCCTTGGCTTTGTA +
Preference number: 2 (lower is better)
Translates to: PDVRHLGWCNETGQIQRDSGTLI*CALGFV
Trigger: TACAAAGCCAAGGGCACATCAGATCAGTGTGCCTGA...ATCTCTTTGAATTTGTCCTGTTTCGTTGCACCAGCCCAGATGTCTCACATCTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR CCA 90 bp ACATCAATGCAACATCTGAGAACTTCCTCCTGTCGTGGCGCAATAGCTCCCCTAGATCTGATGTGCCCTTaGCTTTGTAAAAACCAGTGG +
Preference number: 2 (lower is better)
Translates to: TSMQHLRTSSCRGAIAPLDLMCP*LCKNQW
Trigger: CCACTGGTTTTTACAAAGCCAAGGGCACATCAGATC...TAGGGGAGCTATTGCGCCACGACAGGAGGAAGTTCTCAGATGTTGCATTGATGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR CCA 90 bp CAACAAGGTAACAGCCCAGTAGAGTTGCCAATGTATTCACTACATTCAGCTTTCCACTGGCTCACAGCTTaGCCTGTCAATTTCCGCCAG +
Preference number: 2 (lower is better)
Translates to: QQGNSPVELPMYSLHSAFHWLTA*PVNFRQ
Trigger: CTGGCGGAAATTGACAGGCCAAGCTGTGAGCCAGTG...GAAAGCTGAATGTAGTGAATACATTGGCAACTCTACTGGGCTGTTACCTTGTTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp GTGAGACATCTGGGCTGGTGCAACGAAACAGGACAAATTCAAAGAGATGTATCCCATGAAACATTAAGCTaGCAGCCACAGAGAAGCGGT +
Preference number: 2 (lower is better)
Translates to: VRHLGWCNETGQIQRDVSHETLS*QPQRSG
Trigger: ACCGCTTCTCTGTGGCTGTCAGCTTAATGTTTCATG...GGATACATCTCTTTGAATTTGTCCTGTTTCGTTGCACCAGCCCAGATGTCTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp GTGAGACATCTGGGCTGGTGCAACGAAACAGGACAAATTCAAAGAGATGTATCCTGTTCAAATTTCCCATaGCCCTGCTTCACCTGCATC +
Preference number: 2 (lower is better)
Translates to: VRHLGWCNETGQIQRDVSCSNFP*PCFTCI
Trigger: GATGCAGGTGAAGCAGGGTCATGGGAAATTTGAACA...GGATACATCTCTTTGAATTTGTCCTGTTTCGTTGCACCAGCCCAGATGTCTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR GCA 90 bp TCATGGCTGAGAGGTAAGCACGCTGTATCTGCTCAGCATCCCTTTTACTTTCATACTTCAAAGAAAGGTTaGCATCTGAGGATGGAGCTC +
Preference number: 2 (lower is better)
Translates to: SWLRGKHAVSAQHPFYFHTSKKG*HLRMEL
Trigger: GAGCTCCATCCTCAGATGGCAACCTTTCTTTGAAGT...ATGAAAGTAAAAGGGATGCTGAGCAGATACAGCGTGCTTACCTCTCAGCCATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR CCA 90 bp TCATGGCTGAGAGGTAAGCACGCTGTATCTGCTCAGCATCCCTTTTACTTTCATTTGTGGCCAGACTTCTaGTTTCTCAGTCCATTGTCT +
Preference number: 2 (lower is better)
Translates to: SWLRGKHAVSAQHPFYFHLWPDF*FLSPLS
Trigger: AGACAATGGACTGAGAAACCAGAAGTCTGGCCACAA...ATGAAAGTAAAAGGGATGCTGAGCAGATACAGCGTGCTTACCTCTCAGCCATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CAA 90 bp AGCTCCAGAACTCTAGGATATCAACAAGGTAACAGCCCAGTAGAGTaGCCAATGTATTCACTACATTCAGCTTTCCCCAAGCAACTTCAC +
Preference number: 2 (lower is better)
Translates to: SSRTLGYQQGNSPVE*PMYSLHSAFPKQLH
Trigger: GTGAAGTTGCTTGGGGAAAGCTGAATGTAGTGAATACATTGGCAACTCTACTGGGCTGTTACCTTGTTGATATCCTAGAGTTCTGGAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp GTAGAGTTGCCAATGTATTCACTACATTCAGCTTTCCCCAAGCAACTTCACATCAGAAAGGTTGCCATCTaGGGATGGAGCTCATTCTTC +
Preference number: 2 (lower is better)
Translates to: VELPMYSLHSAFPKQLHIRKVAI*GWSSFF
Trigger: GAAGAATGAGCTCCATCCTCAGATGGCAACCTTTCT...GATGTGAAGTTGCTTGGGGAAAGCTGAATGTAGTGAATACATTGGCAACTCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR GCA 90 bp AGAGTGAAAACCACAAGTGACTCGTCCAGAATCATACAGACAATCTTGTGGCCACACACTGATCTGATGTaGCCTTGGCTTTGTAAAAAC +
Preference number: 2 (lower is better)
Translates to: RVKTTSDSSRIIQTILWPHTDLM*PWLCKN
Trigger: GTTTTTACAAAGCCAAGGGCACATCAGATCAGTGTG...TGGCCACAAGATTGTCTGTATGATTCTGGACGAGTCACTTGTGGTTTTCACTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp ATCTGGTTTACTAACCAGAGAGTGAAAACCACAAGTGACTCGTCCAGAATCATAACCATAGCTTGTAGATaGCTGAAAAGCACTCACGAG +
Preference number: 2 (lower is better)
Translates to: IWFTNQRVKTTSDSSRIITIACR*LKSTHE
Trigger: CTCGTGAGTGCTTTTCAGTCATCTACAAGCTATGGT...TATGATTCTGGACGAGTCACTTGTGGTTTTCACTCTCTGGTTAGTAAACCAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp TGGGAAGCAAATGAGGAAGGAGCCCAGCTCATTAAAGAAATGCAACAATGTTACTTACTAACCAGAGAGTaGAAACCACAAGTGACTCGT +
Preference number: 2 (lower is better)
Translates to: WEANEEGAQLIKEMQQCYLLTRE*KPQVTR
Trigger: ACGAGTCACTTGTGGTTTTCACTCTCTGGTTAGTAA...GTAACATTGTTGCATTTCTTTAATGAGCTGGGCTCCTTCCTCATTTGCTTCCCA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR TCA 90 bp ATCTGGTTTACTAACCAGAGAGTGAAAACCACAAGTGACTCGTCCAGAATCATATGGGGAATAGTTCACTaGCCTCTCATTTCTATGTAC +
Preference number: 2 (lower is better)
Translates to: IWFTNQRVKTTSDSSRIIWGIVH*PLISMY
Trigger: GTACATAGAAATGAGAGGTCAGTGAACTATTCCCCA...TATGATTCTGGACGAGTCACTTGTGGTTTTCACTCTCTGGTTAGTAAACCAGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR GCA 90 bp ATCTGGTTTACTAACCAGAGAGTGAAAACCACAAGTGACTCGTCCAGAATCATAATCCCTCTGTATTGCTaGTTTTGTGGATGTCTTTTC +
Preference number: 2 (lower is better)
Translates to: IWFTNQRVKTTSDSSRIIIPLYC*FCGCLF
Trigger: GAAAAGACATCCACAAAAGCAGCAATACAGAGGGAT...TATGATTCTGGACGAGTCACTTGTGGTTTTCACTCTCTGGTTAGTAAACCAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR CCA 90 bp TGGGAAGCAAATGAGGAAGGAGCCCAGCTCATTAAAGAAATGCAACAATGTTACGTATTGCTGCTTTTGTaGATGTCTTTTCCAGATGAA +
Preference number: 2 (lower is better)
Translates to: WEANEEGAQLIKEMQQCYVLLLL*MSFPDE
Trigger: TTCATCTGGAAAAGACATCCACAAAAGCAGCAATAC...GTAACATTGTTGCATTTCTTTAATGAGCTGGGCTCCTTCCTCATTTGCTTCCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR TCA 72 bp CCTGTGTCAGGGAGTAGTGTGGAGCCCACTGTCAGGTaGAGGACTTCAAAGAAAGGTTGCCATCTGAGGATG +
Preference number: 3 (lower is better)
Translates to: PVSGSSVEPTVR*RTSKKGCHLRM
Trigger: CATCCTCAGATGGCAACCTTTCTTTGAAGTCCTTCACCTGACAGTGGGCTCCACACTACTCCCTGACACAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR TCA 72 bp CTGTCAGGTGAAGGACTTCAAAGAAAGGTTGCCATCTaGGGATGGAGCTCATTCTTCTCTTGTCCGGGTGGC +
Preference number: 3 (lower is better)
Translates to: LSGEGLQRKVAI*GWSSFFSCPGG
Trigger: GCCACCCGGACAAGAGAAGAATGAGCTCCATCCTCAGATGGCAACCTTTCTTTGAAGTCCTTCACCTGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR GCA 72 bp CTTGTCCGGGTGGCATTCAGGCACACTGATCTGATGTaGCCTTGGCTTTGTAAAAACCAGTGGAGATCCTAC +
Preference number: 3 (lower is better)
Translates to: LVRVAFRHTDLM*PWLCKNQWRSY
Trigger: GTAGGATCTCCACTGGTTTTTACAAAGCCAAGGGCACATCAGATCAGTGTGCCTGAATGCCACCCGGACAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CCA 72 bp ATGATGGTGCTCAAGACCCTGTGTCAGGGAGTAGTGTaGAGCCCACTGTCAGGTGAAGGACTTCAAAGAAAG +
Preference number: 3 (lower is better)
Translates to: MMVLKTLCQGVV*SPLSGEGLQRK
Trigger: CTTTCTTTGAAGTCCTTCACCTGACAGTGGGCTCCACACTACTCCCTGACACAGGGTCTTGAGCACCATCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR TCA 72 bp CTTCTCTTGTCCGGGTGGCATTCAGGCACACTGATCTaGTGTGCCCTTGGCTTTGTAAAAACCAGTGGAGAT +
Preference number: 3 (lower is better)
Translates to: LLLSGWHSGTLI*CALGFVKTSGD
Trigger: ATCTCCACTGGTTTTTACAAAGCCAAGGGCACATCAGATCAGTGTGCCTGAATGCCACCCGGACAAGAGAAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR TCA 72 bp ACCCTGCTTCACCTGCATCTCACCATAGCTTGTAGATaGCTGAAAAGCACTCACGAGGTTGACCAGATAGCC +
Preference number: 3 (lower is better)
Translates to: TLLHLHLTIACR*LKSTHEVDQIA
Trigger: GGCTATCTGGTCAACCTCGTGAGTGCTTTTCAGTCATCTACAAGCTATGGTGAGATGCAGGTGAAGCAGGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR TCA 72 bp GCCTCCTGTGTTTGGATTGATGGGCAAGCTGAGATATaGCAGGCATTCGCTCAGCTCCAGAACTCTAGGATA +
Preference number: 3 (lower is better)
Translates to: ASCVWIDGQAEI*QAFAQLQNSRI
Trigger: TATCCTAGAGTTCTGGAGCTGAGCGAATGCCTGTCATATCTCAGCTTGCCCATCAATCCAAACACAGGAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR GCA 72 bp CCCTTCCCAGCAGGGCACTGTACAGTGCTTCTAGCTTaGTGTCCCTATTTTGAGGAACATTCTCCATCTTCT +
Preference number: 3 (lower is better)
Translates to: PFPAGHCTVLLA*CPYFEEHSPSS
Trigger: AGAAGATGGAGAATGTTCCTCAAAATAGGGACAGCAAGCTAGAAGCACTGTACAGTGCCCTGCTGGGAAGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR TCA 72 bp GCACTGTACAGTGCTTCTAGCTTGCTGTCCCTATTTTaGGGAACATTCTCCATCTTCTCTCAGGCTGCTTGT +
Preference number: 3 (lower is better)
Translates to: ALYSASSLLSLF*GTFSIFSQAAC
Trigger: ACAAGCAGCCTGAGAGAAGATGGAGAATGTTCCTCAAAATAGGGACAGCAAGCTAGAAGCACTGTACAGTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CCA 72 bp GCCTGTCAATTTCCGCCAGATGTGAGACATCTGGGCTaGTGCAACGAAACAGGACAAATTCAAAGAGATGTA +
Preference number: 3 (lower is better)
Translates to: ACQFPPDVRHLG*CNETGQIQRDV
Trigger: TACATCTCTTTGAATTTGTCCTGTTTCGTTGCACCAGCCCAGATGTCTCACATCTGGCGGAAATTGACAGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CCA 72 bp ACAAGTGACTCGTCCAGAATCATACAGACAATCTTGTaGCCAGACTTCTGGTTTCTCAGTCCATTGTCTGCC +
Preference number: 3 (lower is better)
Translates to: TSDSSRIIQTIL*PDFWFLSPLSA
Trigger: GGCAGACAATGGACTGAGAAACCAGAAGTCTGGCCACAAGATTGTCTGTATGATTCTGGACGAGTCACTTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CCA 72 bp TACATCAATGCAACATCTGAGAACTTCCTCCTGTCGTaGCGCAATAGCTCCCCTAGGTCCATATCTTCAAGA +
Preference number: 3 (lower is better)
Translates to: YINATSENFLLS*RNSSPRSISSR
Trigger: TCTTGAAGATATGGACCTAGGGGAGCTATTGCGCCACGACAGGAGGAAGTTCTCAGATGTTGCATTGATGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CCA 72 bp CTGTATCTGCTCAGCATCCCTTTTACTTTCATAGTGTaGGTGATGGGCACACCATTAGTGGGACAAAATCTC +
Preference number: 3 (lower is better)
Translates to: LYLLSIPFTFIV*VMGTPLVGQNL
Trigger: GAGATTTTGTCCCACTAATGGTGTGCCCATCACCCACACTATGAAAGTAAAAGGGATGCTGAGCAGATACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR CAA 90 bp TGGGAAGCAAATGAGGAAGGAGCCCAGCTCATTAAAGAAATGCAACAATGTTACGACTTCAAAGAAAGGTaGCCATCTGAGGATGGAGCT +
Preference number: 3 (lower is better)
Translates to: WEANEEGAQLIKEMQQCYDFKER*PSEDGA
Trigger: AGCTCCATCCTCAGATGGCAACCTTTCTTTGAAGTC...GTAACATTGTTGCATTTCTTTAATGAGCTGGGCTCCTTCCTCATTTGCTTCCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR-3UTR CAA 90 bp CTCAGCATCCCTTTTACTTTCATAGTGTGGGTGATGGGCACACCATTAGTGGGAGCAACTTCACATCCATaGTATTCAACCCAGACTAAA +
Preference number: 3 (lower is better)
Translates to: LSIPFTFIVWVMGTPLVGATSHP*YSTQTK
Trigger: TTTAGTCTGGGTTGAATACAATGGATGTGAAGTTGC...TCCCACTAATGGTGTGCCCATCACCCACACTATGAAAGTAAAAGGGATGCTGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR TCA 72 bp ACCCAGACTAAACTATCTGGTTTACTAACCAGAGAGTaGAAACCACAAGTGACTCGTCCAGAATCATACAGA +
Preference number: 3 (lower is better)
Translates to: TQTKLSGLLTRE*KPQVTRPESYR
Trigger: TCTGTATGATTCTGGACGAGTCACTTGTGGTTTTCACTCTCTGGTTAGTAAACCAGATAGTTTAGTCTGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR CCA 90 bp TCTCTTGTCCGGGTGGCATTCAGGCACACTGATCTGATGTGCCCTTGGCTTTGTAATAGGCCCTTCTCCTaGGGGCCTCGAAGGAGCTGT +
Preference number: 4 (lower is better)
Translates to: SLVRVAFRHTDLMCPWLCNRPFS*GPRRSC
Trigger: ACAGCTCCTTCGAGGCCCCCAGGAGAAGGGCCTATT...ACAAAGCCAAGGGCACATCAGATCAGTGTGCCTGAATGCCACCCGGACAAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR GCA 90 bp TGGGAAGCAAATGAGGAAGGAGCCCAGCTCATTAAAGAAATGCAACAATGTTACCATCGCCATCGCGGGTaGCAGGCTGCAGGCGCAGCC +
Preference number: 4 (lower is better)
Translates to: WEANEEGAQLIKEMQQCYHRHRG*QAAGAA
Trigger: GGCTGCGCCTGCAGCCTGGCACCCGCGATGGCGATG...GTAACATTGTTGCATTTCTTTAATGAGCTGGGCTCCTTCCTCATTTGCTTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR CCA 90 bp ATGATGGTGCTCAAGACCCTGTGTCAGGGAGTAGTGTGGAGCCCACTGTCAGGTCTTAGGAAGGGTCACTaGCCCCAAATGTTTGCTTGG +
Preference number: 4 (lower is better)
Translates to: MMVLKTLCQGVVWSPLSGLRKGH*PQMFAW
Trigger: CCAAGCAAACATTTGGGGCCAGTGACCCTTCCTAAG...ACCTGACAGTGGGCTCCACACTACTCCCTGACACAGGGTCTTGAGCACCATCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CAA 72 bp ACAATCTTGTGGCCAGACTTCTGGTTTCTCAGTCCATaGTCTGCCCTTCCCAGCAGGGCACTGTACAGTGCT +
Preference number: 4 (lower is better)
Translates to: TILWPDFWFLSP*SALPSRALYSA
Trigger: AGCACTGTACAGTGCCCTGCTGGGAAGGGCAGACAATGGACTGAGAAACCAGAAGTCTGGCCACAAGATTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR TCA 90 bp ACTTCTGGTTTCTCAGTCCATTGTCTGCCCTTCCCAGCAGGGCACTGTACAGTGGTACTTCCTGAAAGTTaGCTCTGTAGCTTCCTTGGG +
Preference number: 4 (lower is better)
Translates to: TSGFSVHCLPFPAGHCTVVLPES*LCSFLG
Trigger: CCCAAGGAAGCTACAGAGTCAACTTTCAGGAAGTAC...CACTGTACAGTGCCCTGCTGGGAAGGGCAGACAATGGACTGAGAAACCAGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR GCA 90 bp ACTTCTGGTTTCTCAGTCCATTGTCTGCCCTTCCCAGCAGGGCACTGTACAGTGGAGCAACACAGCTTCTaGCCTGTACTTCCTGAAAGT +
Preference number: 4 (lower is better)
Translates to: TSGFSVHCLPFPAGHCTVEQHSF*PVLPES
Trigger: ACTTTCAGGAAGTACAGGGCAGAAGCTGTGTTGCTC...CACTGTACAGTGCCCTGCTGGGAAGGGCAGACAATGGACTGAGAAACCAGAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CAA 72 bp GGAGCCCACTGTCAGGTGAAGGACTTCAAAGAAAGGTaGCCATCTGAGGATGGAGCTCATTCTTCTCTTGTC +
Preference number: 4 (lower is better)
Translates to: GAHCQVKDFKER*PSEDGAHSSLV
Trigger: GACAAGAGAAGAATGAGCTCCATCCTCAGATGGCAACCTTTCTTTGAAGTCCTTCACCTGACAGTGGGCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CAA 72 bp ACCACAAGTGACTCGTCCAGAATCATACAGACAATCTaGTGGCCAGACTTCTGGTTTCTCAGTCCATTGTCT +
Preference number: 4 (lower is better)
Translates to: TTSDSSRIIQTI*WPDFWFLSPLS
Trigger: AGACAATGGACTGAGAAACCAGAAGTCTGGCCACAAGATTGTCTGTATGATTCTGGACGAGTCACTTGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CAA 72 bp ACTCTAGGATATCAACAAGGTAACAGCCCAGTAGAGTaGCCAATGTATTCACTACATTCAGCTTTCCCCAAG +
Preference number: 4 (lower is better)
Translates to: TLGYQQGNSPVE*PMYSLHSAFPK
Trigger: CTTGGGGAAAGCTGAATGTAGTGAATACATTGGCAACTCTACTGGGCTGTTACCTTGTTGATATCCTAGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
3UTR CAA 72 bp ACTACATTCAGCTTTCCCCAAGCAACTTCACATCCATaGTATTCAACCCAGACTAAACTATCTGGTTTACTA +
Preference number: 4 (lower is better)
Translates to: TTFSFPQATSHP*YSTQTKLSGLL
Trigger: TAGTAAACCAGATAGTTTAGTCTGGGTTGAATACAATGGATGTGAAGTTGCTTGGGGAAAGCTGAATGTAGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS GCA 90 bp CTCCACACTCTCAGTGCCACTCTCGGAGACCTTGGCCCAGGACACTaGATAGGAGAGCTGCGGGTCCCAGGGCGCTGTGCAAGGCAAGTC +
Preference number: 5 (lower is better)
Translates to: LHTLSATLGDLGPGH*IGELRVPGRCARQV
Trigger: GACTTGCCTTGCACAGCGCCCTGGGACCCGCAGCTCTCCTATGCAGTGTCCTGGGCCAAGGTCTCCGAGAGTGGCACTGAGAGTGTGGAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR CAA 90 bp ACTTCTGGTTTCTCAGTCCATTGTCTGCCCTTCCCAGCAGGGCACTGTACAGTGCTCGAAGGAGCTGTTTaGCTTGCTCTCCGGGAGCTC +
Preference number: 5 (lower is better)
Translates to: TSGFSVHCLPFPAGHCTVLEGAV*LALREL
Trigger: GAGCTCCCGGAGAGCAAGCAAAACAGCTCCTTCGAG...CACTGTACAGTGCCCTGCTGGGAAGGGCAGACAATGGACTGAGAAACCAGAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS TCA 90 bp CAGAGAGAAGAGCAACACAGCTTCTGCCCTGTACTTCCTGAAAGTTaGCTCTGTAGCTTCCTTGGGGCATCCTGTCACCTTCAGAACCAC +
Preference number: 5 (lower is better)
Translates to: QREEQHSFCPVLPES*LCSFLGASCHLQNH
Trigger: GTGGTTCTGAAGGTGACAGGATGCCCCAAGGAAGCTACAGAGTCAACTTTCAGGAAGTACAGGGCAGAAGCTGTGTTGCTCTTCTCTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR CAA 90 bp TGGGAAGCAAATGAGGAAGGAGCCCAGCTCATTAAAGAAATGCAACAATGTTACACTGGCCCCAAATGTTaGCTTGGGGAGGTGACTGGA +
Preference number: 5 (lower is better)
Translates to: WEANEEGAQLIKEMQQCYTGPKC*LGEVTG
Trigger: TCCAGTCACCTCCCCAAGCAAACATTTGGGGCCAGT...GTAACATTGTTGCATTTCTTTAATGAGCTGGGCTCCTTCCTCATTTGCTTCCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR CAA 90 bp CTCAGCATCCCTTTTACTTTCATAGTGTGGGTGATGGGCACACCATTAGTGGGAGACTGGAAGAAAAGCTaGTTCCGTACCAGGTTTAGA +
Preference number: 5 (lower is better)
Translates to: LSIPFTFIVWVMGTPLVGDWKKS*FRTRFR
Trigger: TCTAAACCTGGTACGGAACAAGCTTTTCTTCCAGTC...TCCCACTAATGGTGTGCCCATCACCCACACTATGAAAGTAAAAGGGATGCTGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS-3UTR CAA 90 bp AGAGTTGCCAATGTATTCACTACATTCAGCTTTCCCCAAGCAACTTCACATCCATGTAGTCGTGCAAATTaGCAGGTGAAAATGATGAGT +
Preference number: 5 (lower is better)
Translates to: RVANVFTTFSFPQATSHPCSRAN*QVKMMS
Trigger: ACTCATCATTTTCACCTGCAAATTTGCACGACTACA...TGGATGTGAAGTTGCTTGGGGAAAGCTGAATGTAGTGAATACATTGGCAACTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS GCA 72 bp CTCAGTGCCACTCTCGGAGACCTTGGCCCAGGACACTaGATAGGAGAGCTGCGGGTCCCAGGGCGCTGTGCA +
Preference number: 6 (lower is better)
Translates to: LSATLGDLGPGH*IGELRVPGRCA
Trigger: TGCACAGCGCCCTGGGACCCGCAGCTCTCCTATGCAGTGTCCTGGGCCAAGGTCTCCGAGAGTGGCACTGAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS CAA 72 bp CATCCTGTCACCTTCAGAACCACGGTGCCGCTCAAGTaGCGCTGCCCTCCGAGCTCCTGCAGGGCACACCTG +
Preference number: 6 (lower is better)
Translates to: HPVTFRTTVPLK*RCPPSSCRAHL
Trigger: CAGGTGTGCCCTGCAGGAGCTCGGAGGGCAGCGCAACTTGAGCGGCACCGTGGTTCTGAAGGTGACAGGATG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS GCA 72 bp ATCCTGTCACCTTCAGAACCACGGTGCCGCTCAAGTTaGGCTGCCCTCCGAGCTCCTGCAGGGCACACCTGT +
Preference number: 6 (lower is better)
Translates to: ILSPSEPRCRSS*AALRAPAGHTC
Trigger: ACAGGTGTGCCCTGCAGGAGCTCGGAGGGCAGCGCAACTTGAGCGGCACCGTGGTTCTGAAGGTGACAGGAT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS GCA 72 bp CTTCCTTGGGGCATCCTGTCACCTTCAGAACCACGGTaGCGCTCAAGTTGCGCTGCCCTCCGAGCTCCTGCA +
Preference number: 6 (lower is better)
Translates to: LPWGILSPSEPR*RSSCAALRAPA
Trigger: TGCAGGAGCTCGGAGGGCAGCGCAACTTGAGCGGCACCGTGGTTCTGAAGGTGACAGGATGCCCCAAGGAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS CAA 72 bp GCCCTTCTCCTGGGGGCCTCGAAGGAGCTGTTTTGCTaGCTCTCCGGGAGCTCCACACTCTCAGTGCCACTC +
Preference number: 6 (lower is better)
Translates to: ALLLGASKELFC*LSGSSTLSVPL
Trigger: GAGTGGCACTGAGAGTGTGGAGCTCCCGGAGAGCAAGCAAAACAGCTCCTTCGAGGCCCCCAGGAGAAGGGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS GCA 72 bp CCCTTCTCCTGGGGGCCTCGAAGGAGCTGTTTTGCTTaGTCTCCGGGAGCTCCACACTCTCAGTGCCACTCT +
Preference number: 6 (lower is better)
Translates to: PFSWGPRRSCFA*SPGAPHSQCHS
Trigger: AGAGTGGCACTGAGAGTGTGGAGCTCCCGGAGAGCAAGCAAAACAGCTCCTTCGAGGCCCCCAGGAGAAGGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS CAA 72 bp ATAGGCCCTTCTCCTGGGGGCCTCGAAGGAGCTGTTTaGCTTGCTCTCCGGGAGCTCCACACTCTCAGTGCC +
Preference number: 6 (lower is better)
Translates to: IGPSPGGLEGAV*LALRELHTLSA
Trigger: GGCACTGAGAGTGTGGAGCTCCCGGAGAGCAAGCAAAACAGCTCCTTCGAGGCCCCCAGGAGAAGGGCCTAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS GCA 72 bp TGTTTTGCTTGCTCTCCGGGAGCTCCACACTCTCAGTaGCACTCTCGGAGACCTTGGCCCAGGACACTGCAT +
Preference number: 6 (lower is better)
Translates to: CFACSPGAPHSQ*HSRRPWPRTLH
Trigger: ATGCAGTGTCCTGGGCCAAGGTCTCCGAGAGTGGCACTGAGAGTGTGGAGCTCCCGGAGAGCAAGCAAAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS CAA 72 bp GCCCTGTACTTCCTGAAAGTTGACTCTGTAGCTTCCTaGGGGCATCCTGTCACCTTCAGAACCACGGTGCCG +
Preference number: 6 (lower is better)
Translates to: ALYFLKVDSVAS*GHPVTFRTTVP
Trigger: CGGCACCGTGGTTCTGAAGGTGACAGGATGCCCCAAGGAAGCTACAGAGTCAACTTTCAGGAAGTACAGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS CAA 90 bp ACAGCTTCTGCCCTGTACTTCCTGAAAGTTGACTCTGTAGCTTCCTaGGGGCATCCTGTCACCTTCAGAACCACGGTGCCGCTCAAGTTG +
Preference number: 6 (lower is better)
Translates to: TASALYFLKVDSVAS*GHPVTFRTTVPLKL
Trigger: CAACTTGAGCGGCACCGTGGTTCTGAAGGTGACAGGATGCCCCAAGGAAGCTACAGAGTCAACTTTCAGGAAGTACAGGGCAGAAGCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4
CDS TCA 72 bp GAGCAACACAGCTTCTGCCCTGTACTTCCTGAAAGTTaGCTCTGTAGCTTCCTTGGGGCATCCTGTCACCTT +
Preference number: 6 (lower is better)
Translates to: EQHSFCPVLPES*LCSFLGASCHL
Trigger: AAGGTGACAGGATGCCCCAAGGAAGCTACAGAGTCAACTTTCAGGAAGTACAGGGCAGAAGCTGTGTTGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000015540.4