RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD80 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000075122

Ensembl transcript IDs: ENSMUST00000099816.3, ENSMUST00000231716.2, ENSMUST00000232409.2

Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACACCTGGAAGTCTGGCACTCAGGAAACTGGTGCAGGAGGATTGCTaGAAGCTTGAAGCCTGCCTCCGCCACAGAGTGATTCTTTGTCAC +
Preference number: 1 (lower is better)
Translates to: TPGSLALRKLVQEDC*KLEACLRHRVILCH
Trigger: GTGACAAAGAATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACTTCCAGGTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 90 bp CTCAGAATCAGCAGAACTACTGTGGTTCATTCGTCTGAGTACTTCTaGAAACCACTGCAGAGGCTTCACCTAGAGAACCGTGTTTGCAGA +
Preference number: 1 (lower is better)
Translates to: LRISRTTVVHSSEYF*KPLQRLHLENRVCR
Trigger: TCTGCAAACACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTGCAGAAGTACTCAGACGAATGAACCACAGTAGTTCTGCTGATTCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 90 bp AGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTACCTaGAATTCAGTTCTTCAGCCTCAGTATACTGAGTGCAGGGATTAC +
Preference number: 1 (lower is better)
Translates to: RSGFQTGSYYPGHAT*NSVLQPQYTECRDY
Trigger: GTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 90 bp GCTGCTTCTTGTTTTCCATTTCTTTGGGGCACATTGATGGAGGAGTaGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTACCTGGAA +
Preference number: 1 (lower is better)
Translates to: AASCFPFLWGTLMEE*VSDRILLSRPCYLE
Trigger: TTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACAAGAAGCAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR TCA 90 bp TCCAGGCCATGCTACCTGGAATTCAGTTCTTCAGCCTCAGTATACTaGGTGCAGGGATTACAGGCAAGTGTGTCTAACGTACATTTTATT +
Preference number: 1 (lower is better)
Translates to: SRPCYLEFSSSASVY*VQGLQASVSNVHFI
Trigger: AATAAAATGTACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 90 bp GGCCATGCTACCTGGAATTCAGTTCTTCAGCCTCAGTATACTGAGTaGAGGGATTACAGGCAAGTGTGTCTAACGTACATTTTATTTTTC +
Preference number: 1 (lower is better)
Translates to: GHATWNSVLQPQYTE*RDYRQVCLTYILFF
Trigger: GAAAAATAAAATGTACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 90 bp TTTCCTGGGCATACAACAGATTCTGGTCCCGTTGAGAAGTTTGGCTaGCATTCGATGTCCTCCTATAAATTCAGACTAGAATATCTGATT +
Preference number: 1 (lower is better)
Translates to: FPGHTTDSGPVEKFG*HSMSSYKFRLEYLI
Trigger: AATCAGATATTCTAGTCTGAATTTATAGGAGGACATCGAATGGCAGCCAAACTTCTCAACGGGACCAGAATCTGTTGTATGCCCAGGAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 90 bp GGAAAGTGCTGGCTGAAAATTACCAACATTTTTATTACCCTCAAATaGGTATACATAGCAACATGTTTCCTACAAATTACACTACAGTCA +
Preference number: 1 (lower is better)
Translates to: GKCWLKITNIFITLK*VYIATCFLQITLQS
Trigger: TGACTGTAGTGTAATTTGTAGGAAACATGTTGCTATGTATACCCATTTGAGGGTAATAAAAATGTTGGTAATTTTCAGCCAGCACTTTCC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR TCA 90 bp CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGGATTGCTGCAAGCTTaGAGCCTGCCTCCGCCACAG +
Preference number: 2 (lower is better)
Translates to: HIDGGVGFRQDLTIQAMLGLLQA*SLPPPQ
Trigger: CTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR GCA 90 bp ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTCTGGTGCAGGAGGATTaGTGCAAGCTTGAAGCCTGC +
Preference number: 2 (lower is better)
Translates to: IKCCSLLPPPSWFFFGVALVQED*CKLEAC
Trigger: GCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAG...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR GCA 90 bp ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTCACTCAGGAAACTGGTaGAGGAGGATTGCTGCAAGC +
Preference number: 2 (lower is better)
Translates to: IKCCSLLPPPSWFFFGVAHSGNW*RRIAAS
Trigger: GCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTG...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CAA 90 bp GTACTTCTGCAAACCACTGCAGAGGCTTCACCTAGAGAACCGTGTTaGCAGAGCCAGGGTAGTGCTAGGTTTCTGAAGTCCTTTGCAGAA +
Preference number: 2 (lower is better)
Translates to: VLLQTTAEASPREPC*QSQGSARFLKSFAE
Trigger: TTCTGCAAAGGACTTCAGAAACCTAGCACTACCCTGGCTCTGCAAACACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTGCAGAAGTAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CCA 90 bp CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGCCATAGCTTACACCTaGAAGTCTGGCACTCAGGAA +
Preference number: 2 (lower is better)
Translates to: HIDGGVGFRQDLTIQAMLAIAYT*KSGTQE
Trigger: TTCCTGAGTGCCAGACTTCCAGGTGTAAGCTATGGC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR TCA 90 bp CCTGGAATTCAGTTCTTCAGCCTCAGTATACTGAGTGCAGGGATTACAGGCAAGGTAGTGCTAGGTTTCTaGAGTCCTTTGCAGAAGAGG +
Preference number: 2 (lower is better)
Translates to: PGIQFFSLSILSAGITGKVVLGF*SPLQKR
Trigger: CCTCTTCTGCAAAGGACTTCAGAAACCTAGCACTAC...CTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR TCA 90 bp ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTAAATTAGCTTGTCTATaGGCTCAGAGCTTGGGGTCT +
Preference number: 2 (lower is better)
Translates to: IKCCSLLPPPSWFFFGVAKLACL*AQSLGS
Trigger: AGACCCCAAGCTCTGAGCTCATAGACAAGCTAATTT...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR GCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCTCGTCTGAGTACTTCTaGAAACCACTGCAGAGGCTT +
Preference number: 2 (lower is better)
Translates to: VCVCVCVCVMCKQMCKSSSSEYF*KPLQRL
Trigger: AAGCCTCTGCAGTGGTTTGCAGAAGTACTCAGACGA...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CAA 90 bp AAGCAGCAGTTAGCTGCTTCTTGTTTTCCATTTCTTTGGGGCACATaGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCA +
Preference number: 2 (lower is better)
Translates to: KQQLAASCFPFLWGT*MEEWVSDRILLSRP
Trigger: TGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACAAGAAGCAGCTAACTGCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR TCA 90 bp ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTTCAGCCTCAGTATACTaGGTGCAGGGATTACAGGCA +
Preference number: 2 (lower is better)
Translates to: TAGLVGCGLHLREKGTFSSASVY*VQGLQA
Trigger: TGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGA...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR GCA 90 bp TGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATAGAGTGCAGGAGGATTGCTaGAAGCTTGAAGCCTGCCTC +
Preference number: 2 (lower is better)
Translates to: WSCRLWITSQRKGNLQYRVQEDC*KLEACL
Trigger: GAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCAC...TCTATACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR TCA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGCCTCCGCCACAGAGTaGTTCTTTGTCACTGAGCAA +
Preference number: 2 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWASATE*FFVTEQ
Trigger: TTGCTCAGTGACAAAGAATCACTCTGTGGCGGAGGC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR TCA 90 bp CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAAGGAAATCTGGATTCTaGCTCACCTTCATAATTCAG +
Preference number: 2 (lower is better)
Translates to: HIDGGVGFRQDLTIQAMLRKSGF*LTFIIQ
Trigger: CTGAATTATGAAGGTGAGTCAGAATCCAGATTTCCT...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CCA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGTGGCACTCAGGAAACTaGTGCAGGAGGATTGCTGCA +
Preference number: 2 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWWHSGN*CRRIAA
Trigger: TGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCA...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR TCA 90 bp AATTCCACTGTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGGTTGCAAATGGTAGATaGGACCTCATGAGCCACATA +
Preference number: 2 (lower is better)
Translates to: NSTVADLYQRAKATSRNLVANGR*DLMSHI
Trigger: TATGTGGCTCATGAGGTCTCATCTACCATTTGCAAC...CAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTACAGTGGAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR GCA 90 bp GTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGAGGAAGTTCATGTGCAAGCAAATGTaGAAATCGTCCCTATGTCCT +
Preference number: 2 (lower is better)
Translates to: VADLYQRAKATSRNLRKFMCKQM*KSSLCP
Trigger: AGGACATAGGGACGATTTGCACATTTGCTTGCACAT...GAACTTCCTCAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CCA 90 bp ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATACCTGGAAAGTGCTaGCTGAAAATTACCAACATT +
Preference number: 2 (lower is better)
Translates to: TAGLVGCGLHLREKGTFSIPGKC*LKITNI
Trigger: AATGTTGGTAATTTTCAGCCAGCACTTTCCAGGTAT...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CCA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGACATTGATGGAGGAGTaGGTTTCAGACAGGATCTTA +
Preference number: 2 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWTLMEE*VSDRIL
Trigger: TAAGATCCTGTCTGAAACCCACTCCTCCATCAATGT...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CCA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGTGTTTTCCATTTCTTTaGGGCACATTGATGGAGGAG +
Preference number: 2 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWCFPFL*GTLMEE
Trigger: CTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACA...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR GCA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGAAATACCTGGAAAGTaGTGGCTGAAAATTACCAAC +
Preference number: 2 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWEIPGK*WLKITN
Trigger: GTTGGTAATTTTCAGCCAGCACTTTCCAGGTATTTC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 72 bp GCTCTTTTTCTTATACCACCCAGGGTCACCTGCCCCTaGCCAGGGCTAGCACCACCCACAGTGGGCTCAGCC +
Preference number: 3 (lower is better)
Translates to: ALFLIPPRVTCP*PGLAPPTVGSA
Trigger: GGCTGAGCCCACTGTGGGTGGTGCTAGCCCTGGGCAGGGGCAGGTGACCCTGGGTGGTATAAGAAAAAGAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
3UTR GCA 72 bp AGTCTGGCACTCAGGAAACTGGTGCAGGAGGATTGCTaGAAGCTTGAAGCCTGCCTCCGCCACAGAGTGATT +
Preference number: 3 (lower is better)
Translates to: SLALRKLVQEDC*KLEACLRHRVI
Trigger: AATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 72 bp AGCTTACACCTGGAAGTCTGGCACTCAGGAAACTGGTaGAGGAGGATTGCTGCAAGCTTGAAGCCTGCCTCC +
Preference number: 3 (lower is better)
Translates to: SLHLEVWHSGNW*RRIAASLKPAS
Trigger: GGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACTTCCAGGTGTAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 72 bp CATAGCTTACACCTGGAAGTCTGGCACTCAGGAAACTaGTGCAGGAGGATTGCTGCAAGCTTGAAGCCTGCC +
Preference number: 3 (lower is better)
Translates to: HSLHLEVWHSGN*CRRIAASLKPA
Trigger: GGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACTTCCAGGTGTAAGCTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR TCA 72 bp ACTCAGGAAACTGGTGCAGGAGGATTGCTGCAAGCTTaGAGCCTGCCTCCGCCACAGAGTGATTCTTTGTCA +
Preference number: 3 (lower is better)
Translates to: TQETGAGGLLQA*SLPPPQSDSLS
Trigger: TGACAAAGAATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR TCA 72 bp ATTGCTGCAAGCTTGAAGCCTGCCTCCGCCACAGAGTaGTTCTTTGTCACTGAGCAACAGGGTAGAACCCTA +
Preference number: 3 (lower is better)
Translates to: IAASLKPASATE*FFVTEQQGRTL
Trigger: TAGGGTTCTACCCTGTTGCTCAGTGACAAAGAATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 72 bp AGCAGAACTACTGTGGTTCATTCGTCTGAGTACTTCTaGAAACCACTGCAGAGGCTTCACCTAGAGAACCGT +
Preference number: 3 (lower is better)
Translates to: SRTTVVHSSEYF*KPLQRLHLENR
Trigger: ACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTGCAGAAGTACTCAGACGAATGAACCACAGTAGTTCTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 72 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTaGAAGCAAATGTGCAAATCGTCCCTATGTCCTTTC +
Preference number: 3 (lower is better)
Translates to: VCVCVCVCVCVM*KQMCKSSLCPF
Trigger: GAAAGGACATAGGGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACACACACAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 72 bp GAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATaGTACCTGGAATTCAGTTCTTCAGCCTCAGTATAC +
Preference number: 3 (lower is better)
Translates to: EWVSDRILLSRP*YLEFSSSASVY
Trigger: GTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 72 bp TGTTTTCCATTTCTTTGGGGCACATTGATGGAGGAGTaGGTTTCAGACAGGATCTTACTATCCAGGCCATGC +
Preference number: 3 (lower is better)
Translates to: CFPFLWGTLMEE*VSDRILLSRPC
Trigger: GCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 72 bp AAGCAGCAGTTAGCTGCTTCTTGTTTTCCATTTCTTTaGGGCACATTGATGGAGGAGTGGGTTTCAGACAGG +
Preference number: 3 (lower is better)
Translates to: KQQLAASCFPFL*GTLMEEWVSDR
Trigger: CCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACAAGAAGCAGCTAACTGCTGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CAA 90 bp ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTAACTGTGCCTCCAACTaGACTTTTGCTTTGAAGTAT +
Preference number: 3 (lower is better)
Translates to: IKCCSLLPPPSWFFFGVANCASN*TFALKY
Trigger: ATACTTCAAAGCAAAAGTCAAGTTGGAGGCACAGTT...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CAA 90 bp ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTTTTCTTTGGGGCACATaGATGGAGGAGTGGGTTTCA +
Preference number: 3 (lower is better)
Translates to: TAGLVGCGLHLREKGTFSFLWGT*MEEWVS
Trigger: TGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAA...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR TCA 72 bp CAGGTTAAGAGTGGTAGAGCCAGGAAATCTGGATTCTaGCTCACCTTCATAATTCAGGTTCCCTCTTGGAAC +
Preference number: 3 (lower is better)
Translates to: QVKSGRARKSGF*LTFIIQVPSWN
Trigger: GTTCCAAGAGGGAACCTGAATTATGAAGGTGAGTCAGAATCCAGATTTCCTGGCTCTACCACTCTTAACCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR TCA 72 bp TGCTACCTGGAATTCAGTTCTTCAGCCTCAGTATACTaGGTGCAGGGATTACAGGCAAGTGTGTCTAACGTA +
Preference number: 3 (lower is better)
Translates to: CYLEFSSSASVY*VQGLQASVSNV
Trigger: TACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR TCA 72 bp CAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGTTCTaGGAGCACCCACATAAAAATGGACCTGTTTCCTGG +
Preference number: 3 (lower is better)
Translates to: QSTTLFSLVAWF*EHPHKNGPVSW
Trigger: CCAGGAAACAGGTCCATTTTTATGTGGGTGCTCTCAGAACCAAGCCACTAAAGAAAACAAAGTGGTGGACTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 72 bp TTTCAGACAGGATCTTACTATCCAGGCCATGCTACCTaGAATTCAGTTCTTCAGCCTCAGTATACTGAGTGC +
Preference number: 3 (lower is better)
Translates to: FQTGSYYPGHAT*NSVLQPQYTEC
Trigger: GCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CCA 72 bp CTGATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTaGTTTTTCTTTGGTGTGGCTTTCAATGTCTTGTTA +
Preference number: 3 (lower is better)
Translates to: LIKCCSLLPPPS*FFFGVAFNVLL
Trigger: TAACAAGACATTGAAAGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAATCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CAA 90 bp GTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGAGGAAGTTCGAGGCTAGTCAAATATaGCCAGTAAGCAGTATCCTG +
Preference number: 3 (lower is better)
Translates to: VADLYQRAKATSRNLRKFEASQI*PVSSIL
Trigger: CAGGATACTGCTTACTGGCAATATTTGACTAGCCTC...GAACTTCCTCAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR-3UTR CAA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGTCCCGTTGAGAAGTTaGGCTGCCATTCGATGTCCT +
Preference number: 3 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWVPLRS*AAIRCP
Trigger: AGGACATCGAATGGCAGCCAAACTTCTCAACGGGAC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 72 bp GTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTaGAAATCGTCCCTATGTCCTTTCCAAAGAATTCAG +
Preference number: 3 (lower is better)
Translates to: VCVCVCVMCKQM*KSSLCPFQRIQ
Trigger: CTGAATTCTTTGGAAAGGACATAGGGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR GCA 72 bp ACCTGGAATTCAGTTCTTCAGCCTCAGTATACTGAGTaGAGGGATTACAGGCAAGTGTGTCTAACGTACATT +
Preference number: 3 (lower is better)
Translates to: TWNSVLQPQYTE*RDYRQVCLTYI
Trigger: AATGTACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR TCA 72 bp TCCTTTTTGTCACTAACTGTTTTTGAAGTCTCGTGGTaGGCCCGATCACCACTGATTAAATGCTGCAGCTTA +
Preference number: 3 (lower is better)
Translates to: SFLSLTVFEVSW*ARSPLIKCCSL
Trigger: TAAGCTGCAGCATTTAATCAGTGGTGATCGGGCTCACCACGAGACTTCAAAAACAGTTAGTGACAAAAAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CCA 90 bp CTGCCCAGGGCTAGCACCACCCACAGTGGGCTCAGCCTTTCCACTTCAGTCATCATCAGGAGGGTCTTCTaGGGGTTTTTCCCAGGTGAA +
Preference number: 4 (lower is better)
Translates to: LPRASTTHSGLSLSTSVIIRRVF*GFFPGE
Trigger: TTCACCTGGGAAAAACCCCCAGAAGACCCTCCTGAT...GATGACTGAAGTGGAAAGGCTGAGCCCACTGTGGGTGGTGCTAGCCCTGGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp CCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGTAGGCGTATGTGCCCCGGTCTaGAAGGACCAGGCCCAGGAT +
Preference number: 4 (lower is better)
Translates to: PFHFSHQAIKGPANLPVGVCAPV*KDQAQD
Trigger: ATCCTGGGCCTGGTCCTTTCAGACCGGGGCACATAC...GCCTACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp CCAGGGCTAGCACCACCCACAGTGGGCTCAGCCTTTCCACTTCAGTCATCAAGCTTGGACATGGAAACTTaGGGAGTGGTGTATCCTGCA +
Preference number: 4 (lower is better)
Translates to: PGLAPPTVGSAFPLQSSSLDMET*GVVYPA
Trigger: TGCAGGATACACCACTCCTCAAGTTTCCATGTCCAA...GCTTGATGACTGAAGTGGAAAGGCTGAGCCCACTGTGGGTGGTGCTAGCCCTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp CTCAGCCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGGGGGTTTTTCCCAGGTaGAGTCCTCTGACACGTGAG +
Preference number: 4 (lower is better)
Translates to: LSLSTSVIKQSKAQQTCPGVFPR*SPLTRE
Trigger: CTCACGTGTCAGAGGACTTCACCTGGGAAAAACCCC...CGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGGCTGAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
3UTR CAA 72 bp CAAACCACTGCAGAGGCTTCACCTAGAGAACCGTGTTaGCAGAGCCAGGGTAGTGCTAGGTTTCTGAAGTCC +
Preference number: 4 (lower is better)
Translates to: QTTAEASPREPC*QSQGSARFLKS
Trigger: GGACTTCAGAAACCTAGCACTACCCTGGCTCTGCAAACACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR TCA 90 bp ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTGGGGTTTTTCCCAGGTaGAGTCCTCTGACACGTGAG +
Preference number: 4 (lower is better)
Translates to: IKCCSLLPPPSWFFFGVAGVFPR*SPLTRE
Trigger: CTCACGTGTCAGAGGACTTCACCTGGGAAAAACCCC...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CCA 90 bp CATCCACTCTCCCACCACTTCTCTTCAGAAAAGGGCAGGCCTCCCACAGACACCAATGAGCCTTGGACATaGAAACTTGAGGAGTGGTGT +
Preference number: 4 (lower is better)
Translates to: HPLSHHFSSEKGRPPTDTNEPWT*KLEEWC
Trigger: ACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATT...GGTGTCTGTGGGAGGCCTGCCCTTTTCTGAAGAGAAGTGGTGGGAGAGTGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR GCA 90 bp TCAGCCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGTTACTGCGCCGAATCCTaGCCCAAAGAGCACAAGTGT +
Preference number: 4 (lower is better)
Translates to: SAFPLQSSSNQRPSKLARYCAES*PKEHKC
Trigger: ACACTTGTGCTCTTTGGGGCAGGATTCGGCGCAGTA...ACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR GCA 90 bp ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTTACTGCGCCGAATCCTaGCCCAAAGAGCACAAGTGT +
Preference number: 4 (lower is better)
Translates to: IKCCSLLPPPSWFFFGVAYCAES*PKEHKC
Trigger: ACACTTGTGCTCTTTGGGGCAGGATTCGGCGCAGTA...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CCA 90 bp CCCATCCACTCTCCCACCACTTCTCTTCAGAAAAGGGCAGGCCTCCCACAGACATTTAGTGTCTGCAGATaGGTTTCCAGACTCAGTTAT +
Preference number: 4 (lower is better)
Translates to: PIHSPTTSLQKRAGLPQTFSVCR*VSRLSY
Trigger: ATAACTGAGTCTGGAAACCCATCTGCAGACACTAAA...TGTCTGTGGGAGGCCTGCCCTTTTCTGAAGAGAAGTGGTGGGAGAGTGGATGGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp CTCAGCCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGGCACAAAGAGAAGAATaGGCCTTGGACATGGAAACT +
Preference number: 4 (lower is better)
Translates to: LSLSTSVIKQSKAQQTCPAQREE*ALDMET
Trigger: AGTTTCCATGTCCAAGGCTCATTCTTCTCTTTGTGC...CGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGGCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp CCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGTAGGCTTAGTTTCCCAGCAATaGCAGACAGCACCACTTTGT +
Preference number: 4 (lower is better)
Translates to: PFHFSHQAIKGPANLPVGLVSQQ*QTAPLC
Trigger: ACAAAGTGGTGCTGTCTGTCATTGCTGGGAAACTAA...GCCTACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTATTGGACATGGAAACTTaGGGAGTGGTGTATCCTGCA +
Preference number: 4 (lower is better)
Translates to: HIDGGVGFRQDLTIQAMLLDMET*GVVYPA
Trigger: TGCAGGATACACCACTCCTCAAGTTTCCATGTCCAA...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR TCA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGTATGTGCCCCGGTCTaGAAGGACCAGGCCCAGGAT +
Preference number: 4 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWVCAPV*KDQAQD
Trigger: ATCCTGGGCCTGGTCCTTTCAGACCGGGGCACATAC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR TCA 90 bp CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGCACAAAGAGAAGAATaGGCCTTGGACATGGAAACT +
Preference number: 4 (lower is better)
Translates to: HIDGGVGFRQDLTIQAMLAQREE*ALDMET
Trigger: AGTTTCCATGTCCAAGGCTCATTCTTCTCTTTGTGC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CCA 90 bp CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGAGAAGAATGAGCCTTaGACATGGAAACTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: HIDGGVGFRQDLTIQAMLEKNEP*TWKLEE
Trigger: CTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CCA 90 bp ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATCAGGAGGGTCTTCTaGGGGTTTTTCCCAGGTGAA +
Preference number: 4 (lower is better)
Translates to: TAGLVGCGLHLREKGTFSIRRVF*GFFPGE
Trigger: TTCACCTGGGAAAAACCCCCAGAAGACCCTCCTGAT...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
3UTR CAA 72 bp CACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTaGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCAT +
Preference number: 4 (lower is better)
Translates to: HFSHQAIKGPAN*PVGFLMERNPH
Trigger: ATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
3UTR CAA 72 bp CTGGGCATACAACAGATTCTGGTCCCGTTGAGAAGTTaGGCTGCCATTCGATGTCCTCCTATAAATTCAGAC +
Preference number: 4 (lower is better)
Translates to: LGIQQILVPLRS*AAIRCPPINSD
Trigger: GTCTGAATTTATAGGAGGACATCGAATGGCAGCCAAACTTCTCAACGGGACCAGAATCTGTTGTATGCCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR TCA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCTTGCCTCATTTCTTCTaGAACAGCTTCTGTGCTTAC +
Preference number: 4 (lower is better)
Translates to: VCVCVCVCVMCKQMCKSSLPHFF*NSFCAY
Trigger: GTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAA...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR GCA 90 bp CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTACTGAAACAGCTTCTGTaGTTACAGAAGCATTTGATG +
Preference number: 4 (lower is better)
Translates to: HIDGGVGFRQDLTIQAMLLKQLL*LQKHLM
Trigger: CATCAAATGCTTCTGTAAGCACAGAAGCTGTTTCAG...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CCA 90 bp TGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATAGAAATGAGCCTTGGACATaGAAACTTGAGGAGTGGTGT +
Preference number: 4 (lower is better)
Translates to: WSCRLWITSQRKGNLQYRNEPWT*KLEEWC
Trigger: ACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATT...TCTATACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR TCA 90 bp ATTCAAGGCTTTCTCTTCCCAGTTAACTCTATCTTGTGTCAAGTTGTCCGAAAGAAGTCCTCTGACACGTaGGCATCTCCATATTTAATG +
Preference number: 4 (lower is better)
Translates to: IQGFLFPVNSILCQVVRKKSSDT*ASPYLM
Trigger: CATTAAATATGGAGATGCTCACGTGTCAGAGGACTT...CTTTCGGACAACTTGACACAAGATAGAGTTAACTGGGAAGAGAAAGCCTTGAAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp TATCAAGTTGCAGTAAGACTAGGCACCTCTCCTTTTAGTGACAGCTCTTTTTCTTTGCCTCATTTCTTCTaGAACAGCTTCTGTGCTTAC +
Preference number: 4 (lower is better)
Translates to: YQVAVRLGTSPFSDSSFSLPHFF*NSFCAY
Trigger: GTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAA...AGAAAAAGAGCTGTCACTAAAAGGAGAGGTGCCTAGTCTTACTGCAACTTGATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR CCA 90 bp AAGAAATCCTCATTCAAGGCTTTCTCTTCCCAGTTAACTCTATCTTGTGTCAAGGAGAAGAATGAGCCTTaGACATGGAAACTTGAGGAG +
Preference number: 4 (lower is better)
Translates to: KKSSFKAFSSQLTLSCVKEKNEP*TWKLEE
Trigger: CTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTC...CTTGACACAAGATAGAGTTAACTGGGAAGAGAAAGCCTTGAATGAGGATTTCTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR TCA 90 bp AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGAAGTCCTCTGACACGTaGGCATCTCCATATTTAATG +
Preference number: 4 (lower is better)
Translates to: NVLLAFCQSTTLFSLVAWKSSDT*ASPYLM
Trigger: CATTAAATATGGAGATGCTCACGTGTCAGAGGACTT...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR GCA 90 bp TATCAAGTTGCAGTAAGACTAGGCACCTCTCCTTTTAGTGACAGCTCTTTTTCTCTGAAACAGCTTCTGTaGTTACAGAAGCATTTGATG +
Preference number: 4 (lower is better)
Translates to: YQVAVRLGTSPFSDSSFSLKQLL*LQKHLM
Trigger: CATCAAATGCTTCTGTAAGCACAGAAGCTGTTTCAG...AGAAAAAGAGCTGTCACTAAAAGGAGAGGTGCCTAGTCTTACTGCAACTTGATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
3UTR CAA 72 bp TTTCTTTGGTGTGGCTTTCAATGTCTTGTTAGCTTTTaGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTG +
Preference number: 4 (lower is better)
Translates to: FLWCGFQCLVSF*SVHHFVFFSGL
Trigger: CAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATTGAAAGCCACACCAAAGAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCCCAGACTCAGTTATGTaGGGGGTAGAGAAGTCAGCT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVMCKQMCKSSPDSVM*GVEKSA
Trigger: AGCTGACTTCTCTACCCCCAACATAACTGAGTCTGG...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS TCA 90 bp ACTAAAGCCAAGTGTTTAACTTCATACGTTCCTCTTTCCTTCTTTTaGACGACACAGCTGTATGTGCCCCGGTCTGAAAGGACCAGGCCC +
Preference number: 5 (lower is better)
Translates to: TKAKCLTSYVPLSFF*TTQLYVPRSERTRP
Trigger: GGGCCTGGTCCTTTCAGACCGGGGCACATACAGCTGTGTCGTTCAAAAGAAGGAAAGAGGAACGTATGAAGTTAAACACTTGGCTTTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
ENSMUST00000232409.2
CDS-3UTR CAA 90 bp AGCAAACTTGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCATTCAAGGCTTTCCCAGACTCAGTTATGTaGGGGGTAGAGAAGTCAGCT +
Preference number: 5 (lower is better)
Translates to: SKLARRLPDGKKSSFKAFPDSVM*GVEKSA
Trigger: AGCTGACTTCTCTACCCCCAACATAACTGAGTCTGG...GAAAGCCTTGAATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR CAA 90 bp GTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGAGGAAGTTCCCGAAGGTAAGGCTGTaGTTTGTTTCTCTGCTTGCC +
Preference number: 5 (lower is better)
Translates to: VADLYQRAKATSRNLRKFPKVRL*FVSLLA
Trigger: GGCAAGCAGAGAAACAAACAACAGCCTTACCTTCGG...GAACTTCCTCAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS TCA 90 bp AAGTCCGGTTCTTATACTCGGGCCACACTTTTAGTTTCCCAGCAATaGCAGACAGCACCACTTTGTCATGTTTTTGCCAGTAGATTCGGT +
Preference number: 5 (lower is better)
Translates to: KSGSYTRATLLVSQQ*QTAPLCHVFASRFG
Trigger: ACCGAATCTACTGGCAAAAACATGACAAAGTGGTGCTGTCTGTCATTGCTGGGAAACTAAAAGTGTGGCCCGAGTATAAGAACCGGACTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
ENSMUST00000232409.2
CDS-3UTR CAA 90 bp GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCTCCTCTTTCCTTCTTTaGAACGACACAGCTGTATGT +
Preference number: 5 (lower is better)
Translates to: VCVCVCVCVMCKQMCKSSSSFLL*NDTAVC
Trigger: ACATACAGCTGTGTCGTTCAAAAGAAGGAAAGAGGA...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CAA 90 bp AGGCTTCCTGATGGAAAGAAATCCTCATTCAAGGCTTTCTCTTCCCAGTTAACTCCGAAGGTAAGGCTGTaGTTTGTTTCTCTGCTTGCC +
Preference number: 5 (lower is better)
Translates to: RLPDGKKSSFKAFSSQLTPKVRL*FVSLLA
Trigger: GGCAAGCAGAGAAACAAACAACAGCCTTACCTTCGG...AGTTAACTGGGAAGAGAAAGCCTTGAATGAGGATTTCTTTCCATCAGGAAGCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS GCA 90 bp TGCTTCTTCAGGCCCGAAGGTAAGGCTGTTGTTTGTTTCTCTGCTTaGCTCATTTCTTCTGAAACAGCTTCTGTGCTTACAGAAGCATTT +
Preference number: 5 (lower is better)
Translates to: CFFRPEGKAVVCFSA*LISSETASVLTEAF
Trigger: AAATGCTTCTGTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAAGCAGAGAAACAAACAACAGCCTTACCTTCGGGCCTGAAGAAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
ENSMUST00000232409.2
CDS-3UTR CAA 90 bp CAAAGGCCCAGCAAACTTGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCATTCTTATCTTTCACTGACTaGGACAGTTGTTCATCAACA +
Preference number: 5 (lower is better)
Translates to: QRPSKLARRLPDGKKSSFLSFTD*DSCSST
Trigger: TGTTGATGAACAACTGTCCAAGTCAGTGAAAGATAA...GAATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCTGGGCCTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR CAA 90 bp ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTTTATCTTTCACTGACTaGGACAGTTGTTCATCAACA +
Preference number: 5 (lower is better)
Translates to: IKCCSLLPPPSWFFFGVALSFTD*DSCSST
Trigger: TGTTGATGAACAACTGTCCAAGTCAGTGAAAGATAA...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000231716.2
CDS-3UTR CAA 90 bp AGCAAACTTGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCATTCAAGGCTTTCTCCTCTTTCCTTCTTTaGAACGACACAGCTGTATGT +
Preference number: 5 (lower is better)
Translates to: SKLARRLPDGKKSSFKAFSSFLL*NDTAVC
Trigger: ACATACAGCTGTGTCGTTCAAAAGAAGGAAAGAGGA...GAAAGCCTTGAATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS-3UTR CAA 90 bp CTAGGCACCTCTCCTTTTAGTGACAGCTCTTTTTCTTATACCACCCAGGGTCACGTAGAGAAGTCAGCTTaGATGGACAACTTTACTAAA +
Preference number: 5 (lower is better)
Translates to: LGTSPFSDSSFSYTTQGHVEKSA*MDNFTK
Trigger: TTTAGTAAAGTTGTCCATCAAAGCTGACTTCTCTAC...GTGACCCTGGGTGGTATAAGAAAAAGAGCTGTCACTAAAAGGAGAGGTGCCTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000099816.3
CDS TCA 72 bp AGGGTCTTCTGGGGGTTTTTCCCAGGTGAAGTCCTCTaGCACGTGAGCATCTCCATATTTAATGAGACACTT +
Preference number: 6 (lower is better)
Translates to: RVFWGFFPGEVL*HVSISIFNETL
Trigger: AAGTGTCTCATTAAATATGGAGATGCTCACGTGTCAGAGGACTTCACCTGGGAAAAACCCCCAGAAGACCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS CCA 72 bp TTCTCTTCCATTTTCCAACCAAGAGAAGCGAGGCTTTaGGAAACCCCCGGAAGCAAAGCAGGTAATCCTTTT +
Preference number: 6 (lower is better)
Translates to: FSSIFQPREARL*ETPGSKAGNPF
Trigger: AAAAGGATTACCTGCTTTGCTTCCGGGGGTTTCCCAAAGCCTCGCTTCTCTTGGTTGGAAAATGGAAGAGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS CCA 72 bp GAGAAGAATGAGCCTTGGACATGGAAACTTGAGGAGTaGTGTATCCTGCATCAACTGACAATTGCAAGCCAT +
Preference number: 6 (lower is better)
Translates to: EKNEPWTWKLEE*CILHQLTIASH
Trigger: ATGGCTTGCAATTGTCAGTTGATGCAGGATACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
ENSMUST00000232409.2
CDS CCA 72 bp AATCAGCAGCACAAAGAGAAGAATGAGCCTTGGACATaGAAACTTGAGGAGTGGTGTATCCTGCATCAACTG +
Preference number: 6 (lower is better)
Translates to: NQQHKEKNEPWT*KLEEWCILHQL
Trigger: CAGTTGATGCAGGATACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTCTTTGTGCTGCTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
ENSMUST00000232409.2
CDS CCA 72 bp GGAAGCAAAGCAGGTAATCCTTTTAGTGTCTGCAGATaGGTTTCCAGACTCAGTTATGTTGGGGGTAGAGAA +
Preference number: 6 (lower is better)
Translates to: GSKAGNPFSVCR*VSRLSYVGGRE
Trigger: TTCTCTACCCCCAACATAACTGAGTCTGGAAACCCATCTGCAGACACTAAAAGGATTACCTGCTTTGCTTCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS CAA 72 bp TTAGTGTCTGCAGATGGGTTTCCAGACTCAGTTATGTaGGGGGTAGAGAAGTCAGCTTTGATGGACAACTTT +
Preference number: 6 (lower is better)
Translates to: LVSADGFPDSVM*GVEKSALMDNF
Trigger: AAAGTTGTCCATCAAAGCTGACTTCTCTACCCCCAACATAACTGAGTCTGGAAACCCATCTGCAGACACTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS GCA 72 bp TCTCTGCTTGCCTCATTTCTTCTGAAACAGCTTCTGTaGTTACAGAAGCATTTGATGATGACAACGATGACG +
Preference number: 6 (lower is better)
Translates to: SLLASFLLKQLL*LQKHLMMTTMT
Trigger: CGTCATCGTTGTCATCATCAAATGCTTCTGTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAAGCAGAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
ENSMUST00000232409.2
CDS CAA 90 bp CTAATGGTGTACAATTCAGATTCAGGATCCTGGGAAATTGTCGTATaGATGCCAGGTAATTCTCTTCCATTTTCCAACCAAGAGAAGCGA +
Preference number: 6 (lower is better)
Translates to: LMVYNSDSGSWEIVV*MPGNSLPFSNQEKR
Trigger: TCGCTTCTCTTGGTTGGAAAATGGAAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGTACACCATTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS TCA 72 bp ACAATTCAGATTCAGGATCCTGGGAAATTGTCGTATTaGTGCCAGGTAATTCTCTTCCATTTTCCAACCAAG +
Preference number: 6 (lower is better)
Translates to: TIQIQDPGKLSY*CQVILFHFPTK
Trigger: CTTGGTTGGAAAATGGAAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS CCA 72 bp TGGCTACTAATGGTGTACAATTCAGATTCAGGATCCTaGGAAATTGTCGTATTGATGCCAGGTAATTCTCTT +
Preference number: 6 (lower is better)
Translates to: WLLMVYNSDSGS*EIVVLMPGNSL
Trigger: AAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGTACACCATTAGTAGCCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS CAA 72 bp TACAATTCAGATTCAGGATCCTGGGAAATTGTCGTATaGATGCCAGGTAATTCTCTTCCATTTTCCAACCAA +
Preference number: 6 (lower is better)
Translates to: YNSDSGSWEIVV*MPGNSLPFSNQ
Trigger: TTGGTTGGAAAATGGAAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGTA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2
CDS CAA 72 bp GCATCTCCATATTTAATGAGACACTTAATGGTGTGGTaGCGAGTCGTATTGAAATCTAGTTGGCTACTAATG +
Preference number: 6 (lower is better)
Translates to: ASPYLMRHLMVW*RVVLKSSWLLM
Trigger: CATTAGTAGCCAACTAGATTTCAATACGACTCGCAACCACACCATTAAGTGTCTCATTAAATATGGAGATGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000099816.3
ENSMUST00000231716.2