Pregenerated sensors for CD80 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000075122Ensembl transcript IDs: ENSMUST00000099816.3, ENSMUST00000231716.2, ENSMUST00000232409.2
Found 103 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ACACCTGGAAGTCTGGCACTCAGGAAACTGGTGCAGGAGGATTGCTaGAAGCTTGAAGCCTGCCTCCGCCACAGAGTGATTCTTTGTCAC | + |
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Preference number: 1 (lower is better) Translates to: TPGSLALRKLVQEDC*KLEACLRHRVILCH Trigger: GTGACAAAGAATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACTTCCAGGTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 90 bp | CTCAGAATCAGCAGAACTACTGTGGTTCATTCGTCTGAGTACTTCTaGAAACCACTGCAGAGGCTTCACCTAGAGAACCGTGTTTGCAGA | + |
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Preference number: 1 (lower is better) Translates to: LRISRTTVVHSSEYF*KPLQRLHLENRVCR Trigger: TCTGCAAACACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTGCAGAAGTACTCAGACGAATGAACCACAGTAGTTCTGCTGATTCTGAG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 90 bp | AGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTACCTaGAATTCAGTTCTTCAGCCTCAGTATACTGAGTGCAGGGATTAC | + |
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Preference number: 1 (lower is better) Translates to: RSGFQTGSYYPGHAT*NSVLQPQYTECRDY Trigger: GTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 90 bp | GCTGCTTCTTGTTTTCCATTTCTTTGGGGCACATTGATGGAGGAGTaGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTACCTGGAA | + |
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Preference number: 1 (lower is better) Translates to: AASCFPFLWGTLMEE*VSDRILLSRPCYLE Trigger: TTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACAAGAAGCAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR TCA 90 bp | TCCAGGCCATGCTACCTGGAATTCAGTTCTTCAGCCTCAGTATACTaGGTGCAGGGATTACAGGCAAGTGTGTCTAACGTACATTTTATT | + |
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Preference number: 1 (lower is better) Translates to: SRPCYLEFSSSASVY*VQGLQASVSNVHFI Trigger: AATAAAATGTACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 90 bp | GGCCATGCTACCTGGAATTCAGTTCTTCAGCCTCAGTATACTGAGTaGAGGGATTACAGGCAAGTGTGTCTAACGTACATTTTATTTTTC | + |
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Preference number: 1 (lower is better) Translates to: GHATWNSVLQPQYTE*RDYRQVCLTYILFF Trigger: GAAAAATAAAATGTACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 90 bp | TTTCCTGGGCATACAACAGATTCTGGTCCCGTTGAGAAGTTTGGCTaGCATTCGATGTCCTCCTATAAATTCAGACTAGAATATCTGATT | + |
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Preference number: 1 (lower is better) Translates to: FPGHTTDSGPVEKFG*HSMSSYKFRLEYLI Trigger: AATCAGATATTCTAGTCTGAATTTATAGGAGGACATCGAATGGCAGCCAAACTTCTCAACGGGACCAGAATCTGTTGTATGCCCAGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 90 bp | GGAAAGTGCTGGCTGAAAATTACCAACATTTTTATTACCCTCAAATaGGTATACATAGCAACATGTTTCCTACAAATTACACTACAGTCA | + |
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Preference number: 1 (lower is better) Translates to: GKCWLKITNIFITLK*VYIATCFLQITLQS Trigger: TGACTGTAGTGTAATTTGTAGGAAACATGTTGCTATGTATACCCATTTGAGGGTAATAAAAATGTTGGTAATTTTCAGCCAGCACTTTCC 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR TCA 90 bp | CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGGATTGCTGCAAGCTTaGAGCCTGCCTCCGCCACAG | + |
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Preference number: 2 (lower is better) Translates to: HIDGGVGFRQDLTIQAMLGLLQA*SLPPPQ Trigger: CTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR GCA 90 bp | ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTCTGGTGCAGGAGGATTaGTGCAAGCTTGAAGCCTGC | + |
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Preference number: 2 (lower is better) Translates to: IKCCSLLPPPSWFFFGVALVQED*CKLEAC Trigger: GCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAG...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR GCA 90 bp | ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTCACTCAGGAAACTGGTaGAGGAGGATTGCTGCAAGC | + |
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Preference number: 2 (lower is better) Translates to: IKCCSLLPPPSWFFFGVAHSGNW*RRIAAS Trigger: GCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTG...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CAA 90 bp | GTACTTCTGCAAACCACTGCAGAGGCTTCACCTAGAGAACCGTGTTaGCAGAGCCAGGGTAGTGCTAGGTTTCTGAAGTCCTTTGCAGAA | + |
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Preference number: 2 (lower is better) Translates to: VLLQTTAEASPREPC*QSQGSARFLKSFAE Trigger: TTCTGCAAAGGACTTCAGAAACCTAGCACTACCCTGGCTCTGCAAACACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTGCAGAAGTAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CCA 90 bp | CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGCCATAGCTTACACCTaGAAGTCTGGCACTCAGGAA | + |
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Preference number: 2 (lower is better) Translates to: HIDGGVGFRQDLTIQAMLAIAYT*KSGTQE Trigger: TTCCTGAGTGCCAGACTTCCAGGTGTAAGCTATGGC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGGAATTCAGTTCTTCAGCCTCAGTATACTGAGTGCAGGGATTACAGGCAAGGTAGTGCTAGGTTTCTaGAGTCCTTTGCAGAAGAGG | + |
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Preference number: 2 (lower is better) Translates to: PGIQFFSLSILSAGITGKVVLGF*SPLQKR Trigger: CCTCTTCTGCAAAGGACTTCAGAAACCTAGCACTAC...CTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR TCA 90 bp | ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTAAATTAGCTTGTCTATaGGCTCAGAGCTTGGGGTCT | + |
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Preference number: 2 (lower is better) Translates to: IKCCSLLPPPSWFFFGVAKLACL*AQSLGS Trigger: AGACCCCAAGCTCTGAGCTCATAGACAAGCTAATTT...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR GCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCTCGTCTGAGTACTTCTaGAAACCACTGCAGAGGCTT | + |
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Preference number: 2 (lower is better) Translates to: VCVCVCVCVMCKQMCKSSSSEYF*KPLQRL Trigger: AAGCCTCTGCAGTGGTTTGCAGAAGTACTCAGACGA...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CAA 90 bp | AAGCAGCAGTTAGCTGCTTCTTGTTTTCCATTTCTTTGGGGCACATaGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCA | + |
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Preference number: 2 (lower is better) Translates to: KQQLAASCFPFLWGT*MEEWVSDRILLSRP Trigger: TGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACAAGAAGCAGCTAACTGCTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR TCA 90 bp | ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTTCAGCCTCAGTATACTaGGTGCAGGGATTACAGGCA | + |
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Preference number: 2 (lower is better) Translates to: TAGLVGCGLHLREKGTFSSASVY*VQGLQA Trigger: TGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGA...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR GCA 90 bp | TGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATAGAGTGCAGGAGGATTGCTaGAAGCTTGAAGCCTGCCTC | + |
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Preference number: 2 (lower is better) Translates to: WSCRLWITSQRKGNLQYRVQEDC*KLEACL Trigger: GAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCAC...TCTATACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR TCA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGCCTCCGCCACAGAGTaGTTCTTTGTCACTGAGCAA | + |
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Preference number: 2 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWASATE*FFVTEQ Trigger: TTGCTCAGTGACAAAGAATCACTCTGTGGCGGAGGC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR TCA 90 bp | CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAAGGAAATCTGGATTCTaGCTCACCTTCATAATTCAG | + |
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Preference number: 2 (lower is better) Translates to: HIDGGVGFRQDLTIQAMLRKSGF*LTFIIQ Trigger: CTGAATTATGAAGGTGAGTCAGAATCCAGATTTCCT...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CCA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGTGGCACTCAGGAAACTaGTGCAGGAGGATTGCTGCA | + |
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Preference number: 2 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWWHSGN*CRRIAA Trigger: TGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCA...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR TCA 90 bp | AATTCCACTGTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGGTTGCAAATGGTAGATaGGACCTCATGAGCCACATA | + |
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Preference number: 2 (lower is better) Translates to: NSTVADLYQRAKATSRNLVANGR*DLMSHI Trigger: TATGTGGCTCATGAGGTCTCATCTACCATTTGCAAC...CAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTACAGTGGAATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR GCA 90 bp | GTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGAGGAAGTTCATGTGCAAGCAAATGTaGAAATCGTCCCTATGTCCT | + |
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Preference number: 2 (lower is better) Translates to: VADLYQRAKATSRNLRKFMCKQM*KSSLCP Trigger: AGGACATAGGGACGATTTGCACATTTGCTTGCACAT...GAACTTCCTCAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CCA 90 bp | ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATACCTGGAAAGTGCTaGCTGAAAATTACCAACATT | + |
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Preference number: 2 (lower is better) Translates to: TAGLVGCGLHLREKGTFSIPGKC*LKITNI Trigger: AATGTTGGTAATTTTCAGCCAGCACTTTCCAGGTAT...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CCA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGACATTGATGGAGGAGTaGGTTTCAGACAGGATCTTA | + |
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Preference number: 2 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWTLMEE*VSDRIL Trigger: TAAGATCCTGTCTGAAACCCACTCCTCCATCAATGT...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CCA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGTGTTTTCCATTTCTTTaGGGCACATTGATGGAGGAG | + |
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Preference number: 2 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWCFPFL*GTLMEE Trigger: CTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACA...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR GCA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGAAATACCTGGAAAGTaGTGGCTGAAAATTACCAAC | + |
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Preference number: 2 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWEIPGK*WLKITN Trigger: GTTGGTAATTTTCAGCCAGCACTTTCCAGGTATTTC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 72 bp | GCTCTTTTTCTTATACCACCCAGGGTCACCTGCCCCTaGCCAGGGCTAGCACCACCCACAGTGGGCTCAGCC | + |
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Preference number: 3 (lower is better) Translates to: ALFLIPPRVTCP*PGLAPPTVGSA Trigger: GGCTGAGCCCACTGTGGGTGGTGCTAGCCCTGGGCAGGGGCAGGTGACCCTGGGTGGTATAAGAAAAAGAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
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| 3UTR GCA 72 bp | AGTCTGGCACTCAGGAAACTGGTGCAGGAGGATTGCTaGAAGCTTGAAGCCTGCCTCCGCCACAGAGTGATT | + |
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Preference number: 3 (lower is better) Translates to: SLALRKLVQEDC*KLEACLRHRVI Trigger: AATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 72 bp | AGCTTACACCTGGAAGTCTGGCACTCAGGAAACTGGTaGAGGAGGATTGCTGCAAGCTTGAAGCCTGCCTCC | + |
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Preference number: 3 (lower is better) Translates to: SLHLEVWHSGNW*RRIAASLKPAS Trigger: GGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACTTCCAGGTGTAAGCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 72 bp | CATAGCTTACACCTGGAAGTCTGGCACTCAGGAAACTaGTGCAGGAGGATTGCTGCAAGCTTGAAGCCTGCC | + |
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Preference number: 3 (lower is better) Translates to: HSLHLEVWHSGN*CRRIAASLKPA Trigger: GGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGTGCCAGACTTCCAGGTGTAAGCTATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR TCA 72 bp | ACTCAGGAAACTGGTGCAGGAGGATTGCTGCAAGCTTaGAGCCTGCCTCCGCCACAGAGTGATTCTTTGTCA | + |
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Preference number: 3 (lower is better) Translates to: TQETGAGGLLQA*SLPPPQSDSLS Trigger: TGACAAAGAATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAATCCTCCTGCACCAGTTTCCTGAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR TCA 72 bp | ATTGCTGCAAGCTTGAAGCCTGCCTCCGCCACAGAGTaGTTCTTTGTCACTGAGCAACAGGGTAGAACCCTA | + |
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Preference number: 3 (lower is better) Translates to: IAASLKPASATE*FFVTEQQGRTL Trigger: TAGGGTTCTACCCTGTTGCTCAGTGACAAAGAATCACTCTGTGGCGGAGGCAGGCTTCAAGCTTGCAGCAAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 72 bp | AGCAGAACTACTGTGGTTCATTCGTCTGAGTACTTCTaGAAACCACTGCAGAGGCTTCACCTAGAGAACCGT | + |
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Preference number: 3 (lower is better) Translates to: SRTTVVHSSEYF*KPLQRLHLENR Trigger: ACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTGCAGAAGTACTCAGACGAATGAACCACAGTAGTTCTGCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 72 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATGTaGAAGCAAATGTGCAAATCGTCCCTATGTCCTTTC | + |
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Preference number: 3 (lower is better) Translates to: VCVCVCVCVCVM*KQMCKSSLCPF Trigger: GAAAGGACATAGGGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACACACACAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR GCA 72 bp | GAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATaGTACCTGGAATTCAGTTCTTCAGCCTCAGTATAC | + |
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Preference number: 3 (lower is better) Translates to: EWVSDRILLSRP*YLEFSSSASVY Trigger: GTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 72 bp | TGTTTTCCATTTCTTTGGGGCACATTGATGGAGGAGTaGGTTTCAGACAGGATCTTACTATCCAGGCCATGC | + |
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Preference number: 3 (lower is better) Translates to: CFPFLWGTLMEE*VSDRILLSRPC Trigger: GCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 72 bp | AAGCAGCAGTTAGCTGCTTCTTGTTTTCCATTTCTTTaGGGCACATTGATGGAGGAGTGGGTTTCAGACAGG | + |
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Preference number: 3 (lower is better) Translates to: KQQLAASCFPFL*GTLMEEWVSDR Trigger: CCTGTCTGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAATGGAAAACAAGAAGCAGCTAACTGCTGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CAA 90 bp | ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTAACTGTGCCTCCAACTaGACTTTTGCTTTGAAGTAT | + |
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Preference number: 3 (lower is better) Translates to: IKCCSLLPPPSWFFFGVANCASN*TFALKY Trigger: ATACTTCAAAGCAAAAGTCAAGTTGGAGGCACAGTT...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CAA 90 bp | ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTTTTCTTTGGGGCACATaGATGGAGGAGTGGGTTTCA | + |
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Preference number: 3 (lower is better) Translates to: TAGLVGCGLHLREKGTFSFLWGT*MEEWVS Trigger: TGAAACCCACTCCTCCATCAATGTGCCCCAAAGAAA...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR TCA 72 bp | CAGGTTAAGAGTGGTAGAGCCAGGAAATCTGGATTCTaGCTCACCTTCATAATTCAGGTTCCCTCTTGGAAC | + |
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Preference number: 3 (lower is better) Translates to: QVKSGRARKSGF*LTFIIQVPSWN Trigger: GTTCCAAGAGGGAACCTGAATTATGAAGGTGAGTCAGAATCCAGATTTCCTGGCTCTACCACTCTTAACCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR TCA 72 bp | TGCTACCTGGAATTCAGTTCTTCAGCCTCAGTATACTaGGTGCAGGGATTACAGGCAAGTGTGTCTAACGTA | + |
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Preference number: 3 (lower is better) Translates to: CYLEFSSSASVY*VQGLQASVSNV Trigger: TACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR TCA 72 bp | CAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGTTCTaGGAGCACCCACATAAAAATGGACCTGTTTCCTGG | + |
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Preference number: 3 (lower is better) Translates to: QSTTLFSLVAWF*EHPHKNGPVSW Trigger: CCAGGAAACAGGTCCATTTTTATGTGGGTGCTCTCAGAACCAAGCCACTAAAGAAAACAAAGTGGTGGACTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 72 bp | TTTCAGACAGGATCTTACTATCCAGGCCATGCTACCTaGAATTCAGTTCTTCAGCCTCAGTATACTGAGTGC | + |
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Preference number: 3 (lower is better) Translates to: FQTGSYYPGHAT*NSVLQPQYTEC Trigger: GCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGTAGCATGGCCTGGATAGTAAGATCCTGTCTGAAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR CCA 72 bp | CTGATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTaGTTTTTCTTTGGTGTGGCTTTCAATGTCTTGTTA | + |
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Preference number: 3 (lower is better) Translates to: LIKCCSLLPPPS*FFFGVAFNVLL Trigger: TAACAAGACATTGAAAGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAATCAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CAA 90 bp | GTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGAGGAAGTTCGAGGCTAGTCAAATATaGCCAGTAAGCAGTATCCTG | + |
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Preference number: 3 (lower is better) Translates to: VADLYQRAKATSRNLRKFEASQI*PVSSIL Trigger: CAGGATACTGCTTACTGGCAATATTTGACTAGCCTC...GAACTTCCTCAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
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| 3UTR-3UTR CAA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGTCCCGTTGAGAAGTTaGGCTGCCATTCGATGTCCT | + |
|
Preference number: 3 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWVPLRS*AAIRCP Trigger: AGGACATCGAATGGCAGCCAAACTTCTCAACGGGAC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| 3UTR GCA 72 bp | GTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTaGAAATCGTCCCTATGTCCTTTCCAAAGAATTCAG | + |
|
Preference number: 3 (lower is better) Translates to: VCVCVCVMCKQM*KSSLCPFQRIQ Trigger: CTGAATTCTTTGGAAAGGACATAGGGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| 3UTR GCA 72 bp | ACCTGGAATTCAGTTCTTCAGCCTCAGTATACTGAGTaGAGGGATTACAGGCAAGTGTGTCTAACGTACATT | + |
|
Preference number: 3 (lower is better) Translates to: TWNSVLQPQYTE*RDYRQVCLTYI Trigger: AATGTACGTTAGACACACTTGCCTGTAATCCCTGCACTCAGTATACTGAGGCTGAAGAACTGAATTCCAGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| 3UTR TCA 72 bp | TCCTTTTTGTCACTAACTGTTTTTGAAGTCTCGTGGTaGGCCCGATCACCACTGATTAAATGCTGCAGCTTA | + |
|
Preference number: 3 (lower is better) Translates to: SFLSLTVFEVSW*ARSPLIKCCSL Trigger: TAAGCTGCAGCATTTAATCAGTGGTGATCGGGCTCACCACGAGACTTCAAAAACAGTTAGTGACAAAAAGGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CCA 90 bp | CTGCCCAGGGCTAGCACCACCCACAGTGGGCTCAGCCTTTCCACTTCAGTCATCATCAGGAGGGTCTTCTaGGGGTTTTTCCCAGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: LPRASTTHSGLSLSTSVIIRRVF*GFFPGE Trigger: TTCACCTGGGAAAAACCCCCAGAAGACCCTCCTGAT...GATGACTGAAGTGGAAAGGCTGAGCCCACTGTGGGTGGTGCTAGCCCTGGGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | CCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGTAGGCGTATGTGCCCCGGTCTaGAAGGACCAGGCCCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: PFHFSHQAIKGPANLPVGVCAPV*KDQAQD Trigger: ATCCTGGGCCTGGTCCTTTCAGACCGGGGCACATAC...GCCTACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | CCAGGGCTAGCACCACCCACAGTGGGCTCAGCCTTTCCACTTCAGTCATCAAGCTTGGACATGGAAACTTaGGGAGTGGTGTATCCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: PGLAPPTVGSAFPLQSSSLDMET*GVVYPA Trigger: TGCAGGATACACCACTCCTCAAGTTTCCATGTCCAA...GCTTGATGACTGAAGTGGAAAGGCTGAGCCCACTGTGGGTGGTGCTAGCCCTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | CTCAGCCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGGGGGTTTTTCCCAGGTaGAGTCCTCTGACACGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: LSLSTSVIKQSKAQQTCPGVFPR*SPLTRE Trigger: CTCACGTGTCAGAGGACTTCACCTGGGAAAAACCCC...CGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGGCTGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| 3UTR CAA 72 bp | CAAACCACTGCAGAGGCTTCACCTAGAGAACCGTGTTaGCAGAGCCAGGGTAGTGCTAGGTTTCTGAAGTCC | + |
|
Preference number: 4 (lower is better) Translates to: QTTAEASPREPC*QSQGSARFLKS Trigger: GGACTTCAGAAACCTAGCACTACCCTGGCTCTGCAAACACGGTTCTCTAGGTGAAGCCTCTGCAGTGGTTTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR TCA 90 bp | ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTGGGGTTTTTCCCAGGTaGAGTCCTCTGACACGTGAG | + |
|
Preference number: 4 (lower is better) Translates to: IKCCSLLPPPSWFFFGVAGVFPR*SPLTRE Trigger: CTCACGTGTCAGAGGACTTCACCTGGGAAAAACCCC...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CCA 90 bp | CATCCACTCTCCCACCACTTCTCTTCAGAAAAGGGCAGGCCTCCCACAGACACCAATGAGCCTTGGACATaGAAACTTGAGGAGTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: HPLSHHFSSEKGRPPTDTNEPWT*KLEEWC Trigger: ACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATT...GGTGTCTGTGGGAGGCCTGCCCTTTTCTGAAGAGAAGTGGTGGGAGAGTGGATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR GCA 90 bp | TCAGCCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGTTACTGCGCCGAATCCTaGCCCAAAGAGCACAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: SAFPLQSSSNQRPSKLARYCAES*PKEHKC Trigger: ACACTTGTGCTCTTTGGGGCAGGATTCGGCGCAGTA...ACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGGCTGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR GCA 90 bp | ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTTACTGCGCCGAATCCTaGCCCAAAGAGCACAAGTGT | + |
|
Preference number: 4 (lower is better) Translates to: IKCCSLLPPPSWFFFGVAYCAES*PKEHKC Trigger: ACACTTGTGCTCTTTGGGGCAGGATTCGGCGCAGTA...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CCA 90 bp | CCCATCCACTCTCCCACCACTTCTCTTCAGAAAAGGGCAGGCCTCCCACAGACATTTAGTGTCTGCAGATaGGTTTCCAGACTCAGTTAT | + |
|
Preference number: 4 (lower is better) Translates to: PIHSPTTSLQKRAGLPQTFSVCR*VSRLSY Trigger: ATAACTGAGTCTGGAAACCCATCTGCAGACACTAAA...TGTCTGTGGGAGGCCTGCCCTTTTCTGAAGAGAAGTGGTGGGAGAGTGGATGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | CTCAGCCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGGCACAAAGAGAAGAATaGGCCTTGGACATGGAAACT | + |
|
Preference number: 4 (lower is better) Translates to: LSLSTSVIKQSKAQQTCPAQREE*ALDMET Trigger: AGTTTCCATGTCCAAGGCTCATTCTTCTCTTTGTGC...CGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGGCTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | CCTTTCCACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTTGCCCGTAGGCTTAGTTTCCCAGCAATaGCAGACAGCACCACTTTGT | + |
|
Preference number: 4 (lower is better) Translates to: PFHFSHQAIKGPANLPVGLVSQQ*QTAPLC Trigger: ACAAAGTGGTGCTGTCTGTCATTGCTGGGAAACTAA...GCCTACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTGGAAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTATTGGACATGGAAACTTaGGGAGTGGTGTATCCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: HIDGGVGFRQDLTIQAMLLDMET*GVVYPA Trigger: TGCAGGATACACCACTCCTCAAGTTTCCATGTCCAA...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR TCA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGGTATGTGCCCCGGTCTaGAAGGACCAGGCCCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWVCAPV*KDQAQD Trigger: ATCCTGGGCCTGGTCCTTTCAGACCGGGGCACATAC...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR TCA 90 bp | CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGCACAAAGAGAAGAATaGGCCTTGGACATGGAAACT | + |
|
Preference number: 4 (lower is better) Translates to: HIDGGVGFRQDLTIQAMLAQREE*ALDMET Trigger: AGTTTCCATGTCCAAGGCTCATTCTTCTCTTTGTGC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CCA 90 bp | CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTAGAGAAGAATGAGCCTTaGACATGGAAACTTGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: HIDGGVGFRQDLTIQAMLEKNEP*TWKLEE Trigger: CTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTC...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CCA 90 bp | ACTGCTGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATCAGGAGGGTCTTCTaGGGGTTTTTCCCAGGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: TAGLVGCGLHLREKGTFSIRRVF*GFFPGE Trigger: TTCACCTGGGAAAAACCCCCAGAAGACCCTCCTGAT...ACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCAGCAGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| 3UTR CAA 72 bp | CACTTCAGTCATCAAGCAATCAAAGGCCCAGCAAACTaGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: HFSHQAIKGPAN*PVGFLMERNPH Trigger: ATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCTGGGCCTTTGATTGCTTGATGACTGAAGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| 3UTR CAA 72 bp | CTGGGCATACAACAGATTCTGGTCCCGTTGAGAAGTTaGGCTGCCATTCGATGTCCTCCTATAAATTCAGAC | + |
|
Preference number: 4 (lower is better) Translates to: LGIQQILVPLRS*AAIRCPPINSD Trigger: GTCTGAATTTATAGGAGGACATCGAATGGCAGCCAAACTTCTCAACGGGACCAGAATCTGTTGTATGCCCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR TCA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCTTGCCTCATTTCTTCTaGAACAGCTTCTGTGCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: VCVCVCVCVMCKQMCKSSLPHFF*NSFCAY Trigger: GTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAA...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR GCA 90 bp | CACATTGATGGAGGAGTGGGTTTCAGACAGGATCTTACTATCCAGGCCATGCTACTGAAACAGCTTCTGTaGTTACAGAAGCATTTGATG | + |
|
Preference number: 4 (lower is better) Translates to: HIDGGVGFRQDLTIQAMLLKQLL*LQKHLM Trigger: CATCAAATGCTTCTGTAAGCACAGAAGCTGTTTCAG...TAGCATGGCCTGGATAGTAAGATCCTGTCTGAAACCCACTCCTCCATCAATGTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CCA 90 bp | TGGTCTTGTAGGTTGTGGATTACATCTCAGAGAAAAGGGAACCTTCAGTATAGAAATGAGCCTTGGACATaGAAACTTGAGGAGTGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: WSCRLWITSQRKGNLQYRNEPWT*KLEEWC Trigger: ACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATT...TCTATACTGAAGGTTCCCTTTTCTCTGAGATGTAATCCACAACCTACAAGACCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR TCA 90 bp | ATTCAAGGCTTTCTCTTCCCAGTTAACTCTATCTTGTGTCAAGTTGTCCGAAAGAAGTCCTCTGACACGTaGGCATCTCCATATTTAATG | + |
|
Preference number: 4 (lower is better) Translates to: IQGFLFPVNSILCQVVRKKSSDT*ASPYLM Trigger: CATTAAATATGGAGATGCTCACGTGTCAGAGGACTT...CTTTCGGACAACTTGACACAAGATAGAGTTAACTGGGAAGAGAAAGCCTTGAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | TATCAAGTTGCAGTAAGACTAGGCACCTCTCCTTTTAGTGACAGCTCTTTTTCTTTGCCTCATTTCTTCTaGAACAGCTTCTGTGCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: YQVAVRLGTSPFSDSSFSLPHFF*NSFCAY Trigger: GTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAA...AGAAAAAGAGCTGTCACTAAAAGGAGAGGTGCCTAGTCTTACTGCAACTTGATA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR CCA 90 bp | AAGAAATCCTCATTCAAGGCTTTCTCTTCCCAGTTAACTCTATCTTGTGTCAAGGAGAAGAATGAGCCTTaGACATGGAAACTTGAGGAG | + |
|
Preference number: 4 (lower is better) Translates to: KKSSFKAFSSQLTLSCVKEKNEP*TWKLEE Trigger: CTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTC...CTTGACACAAGATAGAGTTAACTGGGAAGAGAAAGCCTTGAATGAGGATTTCTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR TCA 90 bp | AATGTCTTGTTAGCTTTTTGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTGGAAGTCCTCTGACACGTaGGCATCTCCATATTTAATG | + |
|
Preference number: 4 (lower is better) Translates to: NVLLAFCQSTTLFSLVAWKSSDT*ASPYLM Trigger: CATTAAATATGGAGATGCTCACGTGTCAGAGGACTT...CCAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR GCA 90 bp | TATCAAGTTGCAGTAAGACTAGGCACCTCTCCTTTTAGTGACAGCTCTTTTTCTCTGAAACAGCTTCTGTaGTTACAGAAGCATTTGATG | + |
|
Preference number: 4 (lower is better) Translates to: YQVAVRLGTSPFSDSSFSLKQLL*LQKHLM Trigger: CATCAAATGCTTCTGTAAGCACAGAAGCTGTTTCAG...AGAAAAAGAGCTGTCACTAAAAGGAGAGGTGCCTAGTCTTACTGCAACTTGATA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| 3UTR CAA 72 bp | TTTCTTTGGTGTGGCTTTCAATGTCTTGTTAGCTTTTaGTCAGTCCACCACTTTGTTTTCTTTAGTGGCTTG | + |
|
Preference number: 4 (lower is better) Translates to: FLWCGFQCLVSF*SVHHFVFFSGL Trigger: CAAGCCACTAAAGAAAACAAAGTGGTGGACTGACAAAAAGCTAACAAGACATTGAAAGCCACACCAAAGAAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCCCAGACTCAGTTATGTaGGGGGTAGAGAAGTCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: VCVCVCVCVMCKQMCKSSPDSVM*GVEKSA Trigger: AGCTGACTTCTCTACCCCCAACATAACTGAGTCTGG...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS TCA 90 bp | ACTAAAGCCAAGTGTTTAACTTCATACGTTCCTCTTTCCTTCTTTTaGACGACACAGCTGTATGTGCCCCGGTCTGAAAGGACCAGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: TKAKCLTSYVPLSFF*TTQLYVPRSERTRP Trigger: GGGCCTGGTCCTTTCAGACCGGGGCACATACAGCTGTGTCGTTCAAAAGAAGGAAAGAGGAACGTATGAAGTTAAACACTTGGCTTTAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 ENSMUST00000232409.2 |
||
| CDS-3UTR CAA 90 bp | AGCAAACTTGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCATTCAAGGCTTTCCCAGACTCAGTTATGTaGGGGGTAGAGAAGTCAGCT | + |
|
Preference number: 5 (lower is better) Translates to: SKLARRLPDGKKSSFKAFPDSVM*GVEKSA Trigger: AGCTGACTTCTCTACCCCCAACATAACTGAGTCTGG...GAAAGCCTTGAATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR CAA 90 bp | GTAGCAGATCTATACCAAAGAGCAAAAGCCACTTCCAGGAATCTGAGGAAGTTCCCGAAGGTAAGGCTGTaGTTTGTTTCTCTGCTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: VADLYQRAKATSRNLRKFPKVRL*FVSLLA Trigger: GGCAAGCAGAGAAACAAACAACAGCCTTACCTTCGG...GAACTTCCTCAGATTCCTGGAAGTGGCTTTTGCTCTTTGGTATAGATCTGCTAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS TCA 90 bp | AAGTCCGGTTCTTATACTCGGGCCACACTTTTAGTTTCCCAGCAATaGCAGACAGCACCACTTTGTCATGTTTTTGCCAGTAGATTCGGT | + |
|
Preference number: 5 (lower is better) Translates to: KSGSYTRATLLVSQQ*QTAPLCHVFASRFG Trigger: ACCGAATCTACTGGCAAAAACATGACAAAGTGGTGCTGTCTGTCATTGCTGGGAAACTAAAAGTGTGGCCCGAGTATAAGAACCGGACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 ENSMUST00000232409.2 |
||
| CDS-3UTR CAA 90 bp | GTGTGTGTGTGTGTGTGTGTGTGTGTGATGTGCAAGCAAATGTGCAAATCGTCCTCCTCTTTCCTTCTTTaGAACGACACAGCTGTATGT | + |
|
Preference number: 5 (lower is better) Translates to: VCVCVCVCVMCKQMCKSSSSFLL*NDTAVC Trigger: ACATACAGCTGTGTCGTTCAAAAGAAGGAAAGAGGA...GGACGATTTGCACATTTGCTTGCACATCACACACACACACACACACACACACAC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CAA 90 bp | AGGCTTCCTGATGGAAAGAAATCCTCATTCAAGGCTTTCTCTTCCCAGTTAACTCCGAAGGTAAGGCTGTaGTTTGTTTCTCTGCTTGCC | + |
|
Preference number: 5 (lower is better) Translates to: RLPDGKKSSFKAFSSQLTPKVRL*FVSLLA Trigger: GGCAAGCAGAGAAACAAACAACAGCCTTACCTTCGG...AGTTAACTGGGAAGAGAAAGCCTTGAATGAGGATTTCTTTCCATCAGGAAGCCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS GCA 90 bp | TGCTTCTTCAGGCCCGAAGGTAAGGCTGTTGTTTGTTTCTCTGCTTaGCTCATTTCTTCTGAAACAGCTTCTGTGCTTACAGAAGCATTT | + |
|
Preference number: 5 (lower is better) Translates to: CFFRPEGKAVVCFSA*LISSETASVLTEAF Trigger: AAATGCTTCTGTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAAGCAGAGAAACAAACAACAGCCTTACCTTCGGGCCTGAAGAAGCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 ENSMUST00000232409.2 |
||
| CDS-3UTR CAA 90 bp | CAAAGGCCCAGCAAACTTGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCATTCTTATCTTTCACTGACTaGGACAGTTGTTCATCAACA | + |
|
Preference number: 5 (lower is better) Translates to: QRPSKLARRLPDGKKSSFLSFTD*DSCSST Trigger: TGTTGATGAACAACTGTCCAAGTCAGTGAAAGATAA...GAATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCTGGGCCTTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR CAA 90 bp | ATTAAATGCTGCAGCTTACTTCCCCCGCCCTCCTGGTTTTTCTTTGGTGTGGCTTTATCTTTCACTGACTaGGACAGTTGTTCATCAACA | + |
|
Preference number: 5 (lower is better) Translates to: IKCCSLLPPPSWFFFGVALSFTD*DSCSST Trigger: TGTTGATGAACAACTGTCCAAGTCAGTGAAAGATAA...AGCCACACCAAAGAAAAACCAGGAGGGCGGGGGAAGTAAGCTGCAGCATTTAAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000231716.2 |
||
| CDS-3UTR CAA 90 bp | AGCAAACTTGCCCGTAGGCTTCCTGATGGAAAGAAATCCTCATTCAAGGCTTTCTCCTCTTTCCTTCTTTaGAACGACACAGCTGTATGT | + |
|
Preference number: 5 (lower is better) Translates to: SKLARRLPDGKKSSFKAFSSFLL*NDTAVC Trigger: ACATACAGCTGTGTCGTTCAAAAGAAGGAAAGAGGA...GAAAGCCTTGAATGAGGATTTCTTTCCATCAGGAAGCCTACGGGCAAGTTTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS-3UTR CAA 90 bp | CTAGGCACCTCTCCTTTTAGTGACAGCTCTTTTTCTTATACCACCCAGGGTCACGTAGAGAAGTCAGCTTaGATGGACAACTTTACTAAA | + |
|
Preference number: 5 (lower is better) Translates to: LGTSPFSDSSFSYTTQGHVEKSA*MDNFTK Trigger: TTTAGTAAAGTTGTCCATCAAAGCTGACTTCTCTAC...GTGACCCTGGGTGGTATAAGAAAAAGAGCTGTCACTAAAAGGAGAGGTGCCTAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000099816.3 |
||
| CDS TCA 72 bp | AGGGTCTTCTGGGGGTTTTTCCCAGGTGAAGTCCTCTaGCACGTGAGCATCTCCATATTTAATGAGACACTT | + |
|
Preference number: 6 (lower is better) Translates to: RVFWGFFPGEVL*HVSISIFNETL Trigger: AAGTGTCTCATTAAATATGGAGATGCTCACGTGTCAGAGGACTTCACCTGGGAAAAACCCCCAGAAGACCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
||
| CDS CCA 72 bp | TTCTCTTCCATTTTCCAACCAAGAGAAGCGAGGCTTTaGGAAACCCCCGGAAGCAAAGCAGGTAATCCTTTT | + |
|
Preference number: 6 (lower is better) Translates to: FSSIFQPREARL*ETPGSKAGNPF Trigger: AAAAGGATTACCTGCTTTGCTTCCGGGGGTTTCCCAAAGCCTCGCTTCTCTTGGTTGGAAAATGGAAGAGAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
||
| CDS CCA 72 bp | GAGAAGAATGAGCCTTGGACATGGAAACTTGAGGAGTaGTGTATCCTGCATCAACTGACAATTGCAAGCCAT | + |
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Preference number: 6 (lower is better) Translates to: EKNEPWTWKLEE*CILHQLTIASH Trigger: ATGGCTTGCAATTGTCAGTTGATGCAGGATACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 ENSMUST00000232409.2 |
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| CDS CCA 72 bp | AATCAGCAGCACAAAGAGAAGAATGAGCCTTGGACATaGAAACTTGAGGAGTGGTGTATCCTGCATCAACTG | + |
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Preference number: 6 (lower is better) Translates to: NQQHKEKNEPWT*KLEEWCILHQL Trigger: CAGTTGATGCAGGATACACCACTCCTCAAGTTTCCATGTCCAAGGCTCATTCTTCTCTTTGTGCTGCTGATT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 ENSMUST00000232409.2 |
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| CDS CCA 72 bp | GGAAGCAAAGCAGGTAATCCTTTTAGTGTCTGCAGATaGGTTTCCAGACTCAGTTATGTTGGGGGTAGAGAA | + |
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Preference number: 6 (lower is better) Translates to: GSKAGNPFSVCR*VSRLSYVGGRE Trigger: TTCTCTACCCCCAACATAACTGAGTCTGGAAACCCATCTGCAGACACTAAAAGGATTACCTGCTTTGCTTCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
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| CDS CAA 72 bp | TTAGTGTCTGCAGATGGGTTTCCAGACTCAGTTATGTaGGGGGTAGAGAAGTCAGCTTTGATGGACAACTTT | + |
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Preference number: 6 (lower is better) Translates to: LVSADGFPDSVM*GVEKSALMDNF Trigger: AAAGTTGTCCATCAAAGCTGACTTCTCTACCCCCAACATAACTGAGTCTGGAAACCCATCTGCAGACACTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
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| CDS GCA 72 bp | TCTCTGCTTGCCTCATTTCTTCTGAAACAGCTTCTGTaGTTACAGAAGCATTTGATGATGACAACGATGACG | + |
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Preference number: 6 (lower is better) Translates to: SLLASFLLKQLL*LQKHLMMTTMT Trigger: CGTCATCGTTGTCATCATCAAATGCTTCTGTAAGCACAGAAGCTGTTTCAGAAGAAATGAGGCAAGCAGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 ENSMUST00000232409.2 |
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| CDS CAA 90 bp | CTAATGGTGTACAATTCAGATTCAGGATCCTGGGAAATTGTCGTATaGATGCCAGGTAATTCTCTTCCATTTTCCAACCAAGAGAAGCGA | + |
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Preference number: 6 (lower is better) Translates to: LMVYNSDSGSWEIVV*MPGNSLPFSNQEKR Trigger: TCGCTTCTCTTGGTTGGAAAATGGAAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGTACACCATTAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
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| CDS TCA 72 bp | ACAATTCAGATTCAGGATCCTGGGAAATTGTCGTATTaGTGCCAGGTAATTCTCTTCCATTTTCCAACCAAG | + |
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Preference number: 6 (lower is better) Translates to: TIQIQDPGKLSY*CQVILFHFPTK Trigger: CTTGGTTGGAAAATGGAAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
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| CDS CCA 72 bp | TGGCTACTAATGGTGTACAATTCAGATTCAGGATCCTaGGAAATTGTCGTATTGATGCCAGGTAATTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: WLLMVYNSDSGS*EIVVLMPGNSL Trigger: AAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGTACACCATTAGTAGCCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
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| CDS CAA 72 bp | TACAATTCAGATTCAGGATCCTGGGAAATTGTCGTATaGATGCCAGGTAATTCTCTTCCATTTTCCAACCAA | + |
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Preference number: 6 (lower is better) Translates to: YNSDSGSWEIVV*MPGNSLPFSNQ Trigger: TTGGTTGGAAAATGGAAGAGAATTACCTGGCATCAATACGACAATTTCCCAGGATCCTGAATCTGAATTGTA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
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| CDS CAA 72 bp | GCATCTCCATATTTAATGAGACACTTAATGGTGTGGTaGCGAGTCGTATTGAAATCTAGTTGGCTACTAATG | + |
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Preference number: 6 (lower is better) Translates to: ASPYLMRHLMVW*RVVLKSSWLLM Trigger: CATTAGTAGCCAACTAGATTTCAATACGACTCGCAACCACACCATTAAGTGTCTCATTAAATATGGAGATGC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000099816.3 ENSMUST00000231716.2 |
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