Pregenerated sensors for CD74 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024610Ensembl transcript IDs: ENSMUST00000050487.16, ENSMUST00000097563.9, ENSMUST00000167610.2
Found 86 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGAGACGGGAAGTGGGGTGTGACATCAGGGAACATAAGAAGGGCTaGGGCACAGGAGAGCAGGGGGCGCTGCTGCTGTGCAGAGCTGGC | + |
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Preference number: 1 (lower is better) Translates to: GRREVGCDIREHKKG*GTGEQGALLLCRAG Trigger: GCCAGCTCTGCACAGCAGCAGCGCCCCCTGCTCTCCTGTGCCTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTTCCCGTCTCCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR TCA 90 bp | GCGTCCTCCTTCTGTTCTGACTTCATTTGCCGTGTCCTGGGACGATaGAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGA | + |
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Preference number: 1 (lower is better) Translates to: ASSFCSDFICRVLGR*NRHQSQAPGCRETG Trigger: TCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATCGTCCCAGGACACGGCAAATGAAGTCAGAACAGAAGGAGGACGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR CCA 90 bp | AAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTaGGGTGTGACATCAGGGAACATAAGAAGGGCTGAGGCACAGGAG | + |
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Preference number: 1 (lower is better) Translates to: KQTPVSSPRVQGDGK*GVTSGNIRRAEAQE Trigger: CTCCTGTGCCTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR TCA 90 bp | TGTGAGGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTaGGGAGAAGGCAGCAAATGTGTCCAGCCTAGGTTAAGGGTAGGG | + |
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Preference number: 1 (lower is better) Translates to: CEEGLLGGGAWVLLP*GEGSKCVQPRLRVG Trigger: CCCTACCCTTAACCTAGGCTGGACACATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCCTCACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR CCA 90 bp | CTTTATCTCAGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATaGGGGTTCCCTTTAGATAGCGGTAGCCAGCAAGGCCCTCCAGCG | + |
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Preference number: 1 (lower is better) Translates to: LYLRAPHSRLLMGQK*GFPLDSGSQQGPPA Trigger: CGCTGGAGGGCCTTGCTGGCTACCGCTATCTAAAGGGAACCCCCATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCTGAGATAAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| 3UTR TCA 90 bp | ACTTTCTTCCTTTATTGTCACTTGAACCATGATCCTACAGGCTGCTaGCAAGCTTGGCTGAGCAAGGAACCTGAAAGGGGGTGGGGCTTG | + |
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Preference number: 1 (lower is better) Translates to: TFFLYCHLNHDPTGC*QAWLSKEPERGWGL Trigger: CAAGCCCCACCCCCTTTCAGGTTCCTTGCTCAGCCAAGCTTGTCAGCAGCCTGTAGGATCATGGTTCAAGTGACAATAAAGGAAGAAAGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR GCA 90 bp | CCTGGGACGATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAGCAGGGGGCGCTGCTaGTGTGCAGAGCTGGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: PGTMKQTPVSSPRVQGDGSRGRC*CAELAS Trigger: AGAGGCCAGCTCTGCACAGCAGCAGCGCCCCCTGCT...CCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATCGTCCCAGG 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR GCA 90 bp | GATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGAGCAGGGGGCGCTGCTaGTGTGCAGAGCTGGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: DETDTSLKPQGAGRREVGSRGRC*CAELAS Trigger: AGAGGCCAGCTCTGCACAGCAGCAGCGCCCCCTGCT...CCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR GCA 90 bp | GGAGACGGGAAGTGGGGTGTGACATCAGGGAACATAAGAAGGGCTGAGGCACAGAGCAGGGGGCGCTGCTaGTGTGCAGAGCTGGCCTCT | + |
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Preference number: 2 (lower is better) Translates to: GDGKWGVTSGNIRRAEAQSRGRC*CAELAS Trigger: AGAGGCCAGCTCTGCACAGCAGCAGCGCCCCCTGCT...CTGTGCCTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTTCCCGTCTCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR GCA 90 bp | GGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAATCTCAAGCCCCAGGGTaGAGGGAGACGGGAAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: GVTGRRGLGSSSLRRRQQSQAPG*RETGSG Trigger: CCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGA...TTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR GCA 90 bp | GATGTGAGGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGTCTCAAGCCCCAGGGTaGAGGGAGACGGGAAGTGGG | + |
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Preference number: 2 (lower is better) Translates to: DVRRGYWEEGLGFFFLEESQAPG*RETGSG Trigger: CCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGA...CTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCCTCACATC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAACAGGGAGACGGGAAGTaGGGTGTGACATCAGGGAAC | + |
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Preference number: 2 (lower is better) Translates to: GVTGRRGLGSSSLRRRQQQGDGK*GVTSGN Trigger: GTTCCCTGATGTCACACCCCACTTCCCGTCTCCCTG...TTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR CCA 90 bp | AGGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCACAGGGAGACGGGAAGTaGGGTGTGACATCAGGGAAC | + |
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Preference number: 2 (lower is better) Translates to: RRGYWEEGLGFFFLEEKAQGDGK*GVTSGN Trigger: GTTCCCTGATGTCACACCCCACTTCCCGTCTCCCTG...TGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR TCA 90 bp | GGAGAAGGCAGCAAATGTGTCCAGCCTAGGTTAAGGGTAGGGCATCCCTTGTCCGAACATAAGAAGGGCTaGGGCACAGGAGAGCAGGGG | + |
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Preference number: 2 (lower is better) Translates to: GEGSKCVQPRLRVGHPLSEHKKG*GTGEQG Trigger: CCCCTGCTCTCCTGTGCCTCAGCCCTTCTTATGTTC...GGACAAGGGATGCCCTACCCTTAACCTAGGCTGGACACATTTGCTGCCTTCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR-3UTR CCA 90 bp | GGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAAATCTAATGGGTCAGAAATaGGGGTTCCCTTTAGATAGC | + |
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Preference number: 2 (lower is better) Translates to: GYWEEGLGFFFLEEKAANLMGQK*GFPLDS Trigger: GCTATCTAAAGGGAACCCCCATTTCTGACCCATTAG...ATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| 3UTR-3UTR CAA 90 bp | GGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGAGGGTAGGGCATCCCTaGTCCCTGTCTGCGGGCCTT | + |
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Preference number: 3 (lower is better) Translates to: GGVTGRRGLGSSSLRRRQRVGHP*SLSAGL Trigger: AAGGCCCGCAGACAGGGACAAGGGATGCCCTACCCT...CTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR CCA 72 bp | CCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTaGGGTGTGACATCAGGGAACATAAGAAGGGCTGAG | + |
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Preference number: 3 (lower is better) Translates to: PVSSPRVQGDGK*GVTSGNIRRAE Trigger: CTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR TCA 72 bp | GGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTaGGGAGAAGGCAGCAAATGTGTCCAGCCTAGGTTA | + |
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Preference number: 3 (lower is better) Translates to: GLLGGGAWVLLP*GEGSKCVQPRL Trigger: TAACCTAGGCTGGACACATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| 3UTR CCA 72 bp | AGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATaGGGGTTCCCTTTAGATAGCGGTAGCCAGCAAGGC | + |
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Preference number: 3 (lower is better) Translates to: RAPHSRLLMGQK*GFPLDSGSQQG Trigger: GCCTTGCTGGCTACCGCTATCTAAAGGGAACCCCCATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| 3UTR TCA 72 bp | CTTTATTGTCACTTGAACCATGATCCTACAGGCTGCTaGCAAGCTTGGCTGAGCAAGGAACCTGAAAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: LYCHLNHDPTGC*QAWLSKEPERG Trigger: CCCCCTTTCAGGTTCCTTGCTCAGCCAAGCTTGTCAGCAGCCTGTAGGATCATGGTTCAAGTGACAATAAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTGTGACATCCGTTCTCGTCGCACTTaGGACGGAACGCACCCGGGT | + |
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Preference number: 4 (lower is better) Translates to: DTSLKPQGAGRREVGCDIRSRRT*DGTHPG Trigger: ACCCGGGTGCGTTCCGTCCCAAGTGCGACGAGAACG...GATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTGTGACATCGGCTCACTGCAGTTATaGCGCCCGCGGCTCTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: DTSLKPQGAGRREVGCDIGSLQL*RPRLLV Trigger: CACCAAGAGCCGCGGGCGCCATAACTGCAGTGAGCC...GATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCGTTCTCGTCGCACTTaGGACGGAACGCACCCGGGT | + |
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Preference number: 4 (lower is better) Translates to: GGVTGRRGLGSSSLRRRQRSRRT*DGTHPG Trigger: ACCCGGGTGCGTTCCGTCCCAAGTGCGACGAGAACG...CTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR GCA 90 bp | CCTGGGACGATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGTGTGAGGAACCTCAGTaGCGTTGGGGAACACACACC | + |
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Preference number: 4 (lower is better) Translates to: PGTMKQTPVSSPRVQGDGCEEPQ*RWGTHT Trigger: GGTGTGTGTTCCCCAACGGCACTGAGGTTCCTCACA...CCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATCGTCCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTGTGACATCGAACCTCAGTGCCGTTaGGGAACACACACCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: DTSLKPQGAGRREVGCDIEPQCR*GTHTSS Trigger: ACTGCTGGTGTGTGTTCCCCAACGGCACTGAGGTTC...GATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR GCA 90 bp | GATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTGTGAGGAACCTCAGTaGCGTTGGGGAACACACACC | + |
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Preference number: 4 (lower is better) Translates to: DETDTSLKPQGAGRREVGCEEPQ*RWGTHT Trigger: GGTGTGTGTTCCCCAACGGCACTGAGGTTCCTCACA...CCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | CTGCGGGCCTTTATAGCGGTAGCCAGCAAGGCCCTCCAGCGTCCTCCTTCTGTTGAACCTCAGTGCCGTTaGGGAACACACACCAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LRAFIAVASKALQRPPSVEPQCR*GTHTSS Trigger: ACTGCTGGTGTGTGTTCCCCAACGGCACTGAGGTTC...AACAGAAGGAGGACGCTGGAGGGCCTTGCTGGCTACCGCTATAAAGGCCCGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | AGGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGGAAGTAAGCAGTGGTaGCCTGCCCAGCCAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: RRGYWEEGLGFFFLEEKAGSKQW*PAQPRA Trigger: TGCTCTTGGCTGGGCAGGCCACCACTGCTTACTTCC...TGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTGTGACATCTGCATCACATGGTCCTaGGTCATGTTGCCGTACTTG | + |
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Preference number: 4 (lower is better) Translates to: DTSLKPQGAGRREVGCDICITWS*VMLPYL Trigger: CAAGTACGGCAACATGACCCAGGACCATGTGATGCA...GATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | CTGCGGGCCTTTATAGCGGTAGCCAGCAAGGCCCTCCAGCGTCCTCCTTCTGTTAGCAGATGCATCACATaGTCCTGGGTCATGTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: LRAFIAVASKALQRPPSVSRCIT*SWVMLP Trigger: CGGCAACATGACCCAGGACCATGTGATGCATCTGCT...AACAGAAGGAGGACGCTGGAGGGCCTTGCTGGCTACCGCTATAAAGGCCCGCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GGAGAAGGCAGCAAATGTGTCCAGCCTAGGTTAAGGGTAGGGCATCCCTTGTCCGACCCAGTTCCTGCCTaGTCACTCCCAGGCCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: GEGSKCVQPRLRVGHPLSDPVPA*SLPGQK Trigger: CTTCTGGCCTGGGAGTGACCAGGCAGGAACTGGGTC...GGACAAGGGATGCCCTACCCTTAACCTAGGCTGGACACATTTGCTGCCTTCTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAAATGGCTCACTGCAGTTATaGCGCCCGCGGCTCTTGGTG | + |
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Preference number: 4 (lower is better) Translates to: GYWEEGLGFFFLEEKAANGSLQL*RPRLLV Trigger: CACCAAGAGCCGCGGGCGCCATAACTGCAGTGAGCC...ATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR TCA 90 bp | AAGTGGGGTGTGACATCAGGGAACATAAGAAGGGCTGAGGCACAGGAGAGCAGGGCAGGTTCTGGGAGGTaGTGGTCAGCTTGTCTAGGC | + |
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Preference number: 4 (lower is better) Translates to: KWGVTSGNIRRAEAQESRAGSGR*WSACLG Trigger: GCCTAGACAAGCTGACCATCACCTCCCAGAACCTGC...CCTGCTCTCCTGTGCCTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | AAGTGGGGTGTGACATCAGGGAACATAAGAAGGGCTGAGGCACAGGAGAGCAGGGGAAGTAAGCAGTGGTaGCCTGCCCAGCCAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: KWGVTSGNIRRAEAQESRGSKQW*PAQPRA Trigger: TGCTCTTGGCTGGGCAGGCCACCACTGCTTACTTCC...CCTGCTCTCCTGTGCCTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GGAGAAGGCAGCAAATGTGTCCAGCCTAGGTTAAGGGTAGGGCATCCCTTGTCCGGAAGTAAGCAGTGGTaGCCTGCCCAGCCAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: GEGSKCVQPRLRVGHPLSGSKQW*PAQPRA Trigger: TGCTCTTGGCTGGGCAGGCCACCACTGCTTACTTCC...GGACAAGGGATGCCCTACCCTTAACCTAGGCTGGACACATTTGCTGCCTTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGGTCTTCCATGTCCAGTaGCTCTTTAGGTGGAGCCTC | + |
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Preference number: 4 (lower is better) Translates to: GGVTGRRGLGSSSLRRRQVFHVQ*LFRWSL Trigger: GAGGCTCCACCTAAAGAGCCACTGGACATGGAAGAC...CTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000050487.16 |
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| CDS-3UTR CCA 90 bp | GGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAAATGACCCAGTTCCTGCCTaGTCACTCCCAGGCCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: GYWEEGLGFFFLEEKAANDPVPA*SLPGQK Trigger: CTTCTGGCCTGGGAGTGACCAGGCAGGAACTGGGTC...ATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR TCA 90 bp | GGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAAATGCAGGTTCTGGGAGGTaGTGGTCAGCTTGTCTAGGC | + |
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Preference number: 4 (lower is better) Translates to: GYWEEGLGFFFLEEKAANAGSGR*WSACLG Trigger: GCCTAGACAAGCTGACCATCACCTCCCAGAACCTGC...ATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR GCA 90 bp | GATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGATTTCGGAAGCTTCATaGGAAGGCTCTCCAGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: DETDTSLKPQGAGRREVGISEAS*EGSPVA Trigger: TGCAACTGGAGAGCCTTCGCATGAAGCTTCCGAAAT...CCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR GCA 90 bp | GATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTCAAACAAGAGCCACTaGTTCATCCAGCTCTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: DETDTSLKPQGAGRREVGSNKSH*FIQLSK Trigger: CTTCGAGAGCTGGATGAAGCAGTGGCTCTTGTTTGA...CCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAAAGCAGATGCATCACATaGTCCTGGGTCATGTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: GVTGRRGLGSSSLRRRQQSRCIT*SWVMLP Trigger: CGGCAACATGACCCAGGACCATGTGATGCATCTGCT...TTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR GCA 90 bp | GTGCAGGGAGACGGGAAGTGGGGTGTGACATCAGGGAACATAAGAAGGGCTGAGATTTCGGAAGCTTCATaGGAAGGCTCTCCAGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: VQGDGKWGVTSGNIRRAEISEAS*EGSPVA Trigger: TGCAACTGGAGAGCCTTCGCATGAAGCTTCCGAAAT...CTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTTCCCGTCTCCCTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GGAGAAGGCAGCAAATGTGTCCAGCCTAGGTTAAGGGTAGGGCATCCCTTGTCCTGCATCACATGGTCCTaGGTCATGTTGCCGTACTTG | + |
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Preference number: 4 (lower is better) Translates to: GEGSKCVQPRLRVGHPLSCITWS*VMLPYL Trigger: CAAGTACGGCAACATGACCCAGGACCATGTGATGCA...GGACAAGGGATGCCCTACCCTTAACCTAGGCTGGACACATTTGCTGCCTTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | GTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAAATGAGCAGATGCATCACATaGTCCTGGGTCATGTTGCCG | + |
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Preference number: 4 (lower is better) Translates to: VTGRRGLGSSSLRRRQQMSRCIT*SWVMLP Trigger: CGGCAACATGACCCAGGACCATGTGATGCATCTGCT...CATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CCA 90 bp | TCTCAGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATGGGGGTTCCCTTTGACCCAGTTCCTGCCTaGTCACTCCCAGGCCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: SQSPTFKTTNGSEMGVPFDPVPA*SLPGQK Trigger: CTTCTGGCCTGGGAGTGACCAGGCAGGAACTGGGTC...AAAGGGAACCCCCATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCTGAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| CDS-3UTR CCA 90 bp | GGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGTGGCTGACTTCTTCCTaGCACTTGGTCAGTACTTTA | + |
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Preference number: 4 (lower is better) Translates to: GGVTGRRGLGSSSLRRRQWLTSS*HLVSTL Trigger: TAAAGTACTGACCAAGTGCCAGGAAGAAGTCAGCCA...CTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR TCA 90 bp | TCTCAGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATGGGGGTTCCCTTTGCAGGTTCTGGGAGGTaGTGGTCAGCTTGTCTAGGC | + |
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Preference number: 4 (lower is better) Translates to: SQSPTFKTTNGSEMGVPFAGSGR*WSACLG Trigger: GCCTAGACAAGCTGACCATCACCTCCCAGAACCTGC...AAAGGGAACCCCCATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCTGAGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| CDS-3UTR GCA 90 bp | GTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGCAAATGTCAAACAAGAGCCACTaGTTCATCCAGCTCTCGAAG | + |
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Preference number: 4 (lower is better) Translates to: VTGRRGLGSSSLRRRQQMSNKSH*FIQLSK Trigger: CTTCGAGAGCTGGATGAAGCAGTGGCTCTTGTTTGA...CATTTGCTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR GCA 90 bp | GGGCCTTTATCTCAGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATGGGGATTTCGGAAGCTTCATaGGAAGGCTCTCCAGTTGCA | + |
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Preference number: 4 (lower is better) Translates to: GPLSQSPTFKTTNGSEMGISEAS*EGSPVA Trigger: TGCAACTGGAGAGCCTTCGCATGAAGCTTCCGAAAT...CCCCATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCTGAGATAAAGGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| CDS-3UTR CCA 90 bp | TGCGGGCCTTTATCTCAGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATGTGGCTGACTTCTTCCTaGCACTTGGTCAGTACTTTA | + |
|
Preference number: 4 (lower is better) Translates to: CGPLSQSPTFKTTNGSEMWLTSS*HLVSTL Trigger: TAAAGTACTGACCAAGTGCCAGGAAGAAGTCAGCCA...CATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCTGAGATAAAGGCCCGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000097563.9 |
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| CDS-3UTR CAA 90 bp | TGTCCTGGGACGATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACCCGTTCTCGTCGCACTaGGGACGGAACGCACCCGGG | + |
|
Preference number: 5 (lower is better) Translates to: CPGTMKQTPVSSPRVQGDPFSSH*GRNAPG Trigger: CCCGGGTGCGTTCCGTCCCAAGTGCGACGAGAACGG...GTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATCGTCCCAGGACA 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 90 bp | GCTTGTCTAGGCGGCCCTGTTGCTGGTACAGGAAGTAAGCAGTGGTaGCCTGCCCAGCCAAGAGCAGAGCCACCAGGACAGAGACACCGG | + |
|
Preference number: 5 (lower is better) Translates to: ACLGGPVAGTGSKQW*PAQPRAEPPGQRHR Trigger: CCGGTGTCTCTGTCCTGGTGGCTCTGCTCTTGGCTGGGCAGGCCACCACTGCTTACTTCCTGTACCAGCAACAGGGCCGCCTAGACAAGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | GATGTGAGGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGCCGTTCTCGTCGCACTaGGGACGGAACGCACCCGGG | + |
|
Preference number: 5 (lower is better) Translates to: DVRRGYWEEGLGFFFLEEPFSSH*GRNAPG Trigger: CCCGGGTGCGTTCCGTCCCAAGTGCGACGAGAACGG...CTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCCTCACATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | GACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTGTGACATCGGAACCTCAGTGCCGTaGGGGAACACACACCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: DTSLKPQGAGRREVGCDIGTSVP*GNTHQQ Trigger: CTGCTGGTGTGTGTTCCCCAACGGCACTGAGGTTCC...GATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | CCTGGGACGATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGGGAACCTCAGTGCCGTaGGGGAACACACACCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: PGTMKQTPVSSPRVQGDGGTSVP*GNTHQQ Trigger: CTGCTGGTGTGTGTTCCCCAACGGCACTGAGGTTCC...CCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATCGTCCCAGG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | GACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACGGGAAGTGGGGTGTGACATCGCGAAGGCTCTCCAGTaGCAGGTTCTGGGAGGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: DTSLKPQGAGRREVGCDIAKALQ*QVLGGD Trigger: ATCACCTCCCAGAACCTGCAACTGGAGAGCCTTCGC...GATGTCACACCCCACTTCCCGTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS TCA 90 bp | GGAAGGTCCCCTTCAGCTGCGGGTACTCCAGGGGTCCAGACCTCGTaGGCAGATGCATCACATGGTCCTGGGTCATGTTGCCGTACTTGG | + |
|
Preference number: 5 (lower is better) Translates to: GRSPSAAGTPGVQTS*ADASHGPGSCCRTW Trigger: CCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAGGTCTGGACCCCTGGAGTACCCGCAGCTGAAGGGGACCTTCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 90 bp | TCAGCTTGTCTAGGCGGCCCTGTTGCTGGTACAGGAAGTAAGCAGTaGTGGCCTGCCCAGCCAAGAGCAGAGCCACCAGGACAGAGACAC | + |
|
Preference number: 5 (lower is better) Translates to: SACLGGPVAGTGSKQ*WPAQPRAEPPGQRH Trigger: GTGTCTCTGTCCTGGTGGCTCTGCTCTTGGCTGGGCAGGCCACCACTGCTTACTTCCTGTACCAGCAACAGGGCCGCCTAGACAAGCTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 90 bp | CTTCCATGTCCAGTGGCTCACTGCAGTTATGGCGCCCGCGGCTCTTaGTGTGAGGAACCTCAGTGCCGTTGGGGAACACACACCAGCAGT | + |
|
Preference number: 5 (lower is better) Translates to: LPCPVAHCSYGARGS*CEEPQCRWGTHTSS Trigger: ACTGCTGGTGTGTGTTCCCCAACGGCACTGAGGTTCCTCACACCAAGAGCCGCGGGCGCCATAACTGCAGTGAGCCACTGGACATGGAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS GCA 90 bp | CCCTTCAGCTGCGGGTACTCCAGGGGTCCAGACCTCGTGAGCAGATaGATCACATGGTCCTGGGTCATGTTGCCGTACTTGGTAACGTTC | + |
|
Preference number: 5 (lower is better) Translates to: PFSCGYSRGPDLVSR*ITWSWVMLPYLVTF Trigger: GAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAGGTCTGGACCCCTGGAGTACCCGCAGCTGAAGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS TCA 90 bp | TCGGAAGCTTCATGCGAAGGCTCTCCAGTTGCAGGTTCTGGGAGGTaGTGGTCAGCTTGTCTAGGCGGCCCTGTTGCTGGTACAGGAAGT | + |
|
Preference number: 5 (lower is better) Translates to: SEASCEGSPVAGSGR*WSACLGGPVAGTGS Trigger: ACTTCCTGTACCAGCAACAGGGCCGCCTAGACAAGCTGACCATCACCTCCCAGAACCTGCAACTGGAGAGCCTTCGCATGAAGCTTCCGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 90 bp | GCAGATTTCGGAAGCTTCATGCGAAGGCTCTCCAGTTGCAGGTTCTaGGAGGTGATGGTCAGCTTGTCTAGGCGGCCCTGTTGCTGGTAC | + |
|
Preference number: 5 (lower is better) Translates to: ADFGSFMRRLSSCRF*EVMVSLSRRPCCWY Trigger: GTACCAGCAACAGGGCCGCCTAGACAAGCTGACCATCACCTCCCAGAACCTGCAACTGGAGAGCCTTCGCATGAAGCTTCCGAAATCTGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 90 bp | TGCGGGTACTCCAGGGGTCCAGACCTCGTGAGCAGATGCATCACATaGTCCTGGGTCATGTTGCCGTACTTGGTAACGTTCTTCACAGGC | + |
|
Preference number: 5 (lower is better) Translates to: CGYSRGPDLVSRCIT*SWVMLPYLVTFFTG Trigger: GCCTGTGAAGAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAGGTCTGGACCCCTGGAGTACCCGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | AAGTGGGGTGTGACATCAGGGAACATAAGAAGGGCTGAGGCACAGGAGAGCAGGGCGAAGGCTCTCCAGTaGCAGGTTCTGGGAGGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: KWGVTSGNIRRAEAQESRAKALQ*QVLGGD Trigger: ATCACCTCCCAGAACCTGCAACTGGAGAGCCTTCGC...CCTGCTCTCCTGTGCCTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS GCA 90 bp | ACAGGTTTGGCAGATTTCGGAAGCTTCATGCGAAGGCTCTCCAGTTaGAGGTTCTGGGAGGTGATGGTCAGCTTGTCTAGGCGGCCCTGT | + |
|
Preference number: 5 (lower is better) Translates to: TGLADFGSFMRRLSS*RFWEVMVSLSRRPC Trigger: ACAGGGCCGCCTAGACAAGCTGACCATCACCTCCCAGAACCTGCAACTGGAGAGCCTTCGCATGAAGCTTCCGAAATCTGCCAAACCTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 90 bp | TACTCCAGGGGTCCAGACCTCGTGAGCAGATGCATCACATGGTCCTaGGTCATGTTGCCGTACTTGGTAACGTTCTTCACAGGCCCAAGG | + |
|
Preference number: 5 (lower is better) Translates to: YSRGPDLVSRCITWS*VMLPYLVTFFTGPR Trigger: CCTTGGGCCTGTGAAGAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAGGTCTGGACCCCTGGAGTA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | GGAGGGGTTACTGGGAGGAGGGGCTTGGGTTCTTCTTCCTTGAGGAGAAGGCAGTCCTCCAGGGAGTTCTaGCTCATCTCAAACAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GGVTGRRGLGSSSLRRRQSSREF*LISNKS Trigger: GCTCTTGTTTGAGATGAGCAAGAACTCCCTGGAGGA...CTGCCTTCTCCTCAAGGAAGAAGAACCCAAGCCCCTCCTCCCAGTAACCCCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | TGTCCTGGGACGATGAAACAGACACCAGTCTCAAGCCCCAGGGTGCAGGGAGACACTTCTTCCTGGCACTaGGTCAGTACTTTAGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: CPGTMKQTPVSSPRVQGDTSSWH*VSTLGG Trigger: TCCACCTAAAGTACTGACCAAGTGCCAGGAAGAAGT...GTCTCCCTGCACCCTGGGGCTTGAGACTGGTGTCTGTTTCATCGTCCCAGGACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | GTGCAGGGAGACGGGAAGTGGGGTGTGACATCAGGGAACATAAGAAGGGCTGAGACTTCTTCCTGGCACTaGGTCAGTACTTTAGGTGGA | + |
|
Preference number: 5 (lower is better) Translates to: VQGDGKWGVTSGNIRRAETSSWH*VSTLGG Trigger: TCCACCTAAAGTACTGACCAAGTGCCAGGAAGAAGT...CTCAGCCCTTCTTATGTTCCCTGATGTCACACCCCACTTCCCGTCTCCCTGCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | AGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATGGGGGTTCCCTTTAGATGCGAAGGCTCTCCAGTaGCAGGTTCTGGGAGGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: RAPHSRLLMGQKWGFPLDAKALQ*QVLGGD Trigger: ATCACCTCCCAGAACCTGCAACTGGAGAGCCTTCGC...ATCTAAAGGGAACCCCCATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| CDS GCA 90 bp | TTCTTCTCCTCCAGGGAGTTCTTGCTCATCTCAAACAAGAGCCACTaGTTCATCCAGCTCTCGAAGATCTTCCAGTTCACGCCATCCATG | + |
|
Preference number: 5 (lower is better) Translates to: FFSSREFLLISNKSH*FIQLSKIFQFTPSM Trigger: CATGGATGGCGTGAACTGGAAGATCTTCGAGAGCTGGATGAAGCAGTGGCTCTTGTTTGAGATGAGCAAGAACTCCCTGGAGGAGAAGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS-3UTR CAA 90 bp | GGGCCTTTATCTCAGAGCCCCACATTCAAGACTACTAATGGGTCAGAAATGGGGTCCTCCAGGGAGTTCTaGCTCATCTCAAACAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GPLSQSPTFKTTNGSEMGSSREF*LISNKS Trigger: GCTCTTGTTTGAGATGAGCAAGAACTCCCTGGAGGA...CCCCATTTCTGACCCATTAGTAGTCTTGAATGTGGGGCTCTGAGATAAAGGCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 |
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| CDS TCA 72 bp | GGCTCACTGCAGTTATGGCGCCCGCGGCTCTTGGTGTaGGGAACCTCAGTGCCGTTGGGGAACACACACCAG | + |
|
Preference number: 6 (lower is better) Translates to: GSLQLWRPRLLV*GTSVPLGNTHQ Trigger: CTGGTGTGTGTTCCCCAACGGCACTGAGGTTCCTCACACCAAGAGCCGCGGGCGCCATAACTGCAGTGAGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS GCA 72 bp | TATGGCGCCCGCGGCTCTTGGTGTGAGGAACCTCAGTaGCGTTGGGGAACACACACCAGCAGTAGCCAGTGC | + |
|
Preference number: 6 (lower is better) Translates to: YGARGSWCEEPQ*RWGTHTSSSQC Trigger: GCACTGGCTACTGCTGGTGTGTGTTCCCCAACGGCACTGAGGTTCCTCACACCAAGAGCCGCGGGCGCCATA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 72 bp | CTAGGCGGCCCTGTTGCTGGTACAGGAAGTAAGCAGTaGTGGCCTGCCCAGCCAAGAGCAGAGCCACCAGGA | + |
|
Preference number: 6 (lower is better) Translates to: LGGPVAGTGSKQ*WPAQPRAEPPG Trigger: TCCTGGTGGCTCTGCTCTTGGCTGGGCAGGCCACCACTGCTTACTTCCTGTACCAGCAACAGGGCCGCCTAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 72 bp | CCAGTGGCTCACTGCAGTTATGGCGCCCGCGGCTCTTaGTGTGAGGAACCTCAGTGCCGTTGGGGAACACAC | + |
|
Preference number: 6 (lower is better) Translates to: PVAHCSYGARGS*CEEPQCRWGTH Trigger: GTGTGTTCCCCAACGGCACTGAGGTTCCTCACACCAAGAGCCGCGGGCGCCATAACTGCAGTGAGCCACTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS TCA 72 bp | TCATGCGAAGGCTCTCCAGTTGCAGGTTCTGGGAGGTaGTGGTCAGCTTGTCTAGGCGGCCCTGTTGCTGGT | + |
|
Preference number: 6 (lower is better) Translates to: SCEGSPVAGSGR*WSACLGGPVAG Trigger: ACCAGCAACAGGGCCGCCTAGACAAGCTGACCATCACCTCCCAGAACCTGCAACTGGAGAGCCTTCGCATGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 72 bp | ACTGGAGTGGCAAATAGTTACCGTTCTCGTCGCACTTaGGACGGAACGCACCCGGGTAGACGGCAGGGATGT | + |
|
Preference number: 6 (lower is better) Translates to: TGVANSYRSRRT*DGTHPGRRQGC Trigger: ACATCCCTGCCGTCTACCCGGGTGCGTTCCGTCCCAAGTGCGACGAGAACGGTAACTATTTGCCACTCCAGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CAA 90 bp | GGACGCATCAGCAAGGGAGTAGCCATCCGCATCTGGCTCACAGGTTaGGCAGATTTCGGAAGCTTCATGCGAAGGCTCTCCAGTTGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: GRISKGVAIRIWLTG*ADFGSFMRRLSSCR Trigger: CCTGCAACTGGAGAGCCTTCGCATGAAGCTTCCGAAATCTGCCAAACCTGTGAGCCAGATGCGGATGGCTACTCCCTTGCTGATGCGTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 72 bp | TCCAGGGGTCCAGACCTCGTGAGCAGATGCATCACATaGTCCTGGGTCATGTTGCCGTACTTGGTAACGTTC | + |
|
Preference number: 6 (lower is better) Translates to: SRGPDLVSRCIT*SWVMLPYLVTF Trigger: GAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAGGTCTGGACCCCTGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CAA 72 bp | CTCGTGAGCAGATGCATCACATGGTCCTGGGTCATGTaGCCGTACTTGGTAACGTTCTTCACAGGCCCAAGG | + |
|
Preference number: 6 (lower is better) Translates to: LVSRCITWSWVM*PYLVTFFTGPR Trigger: CCTTGGGCCTGTGAAGAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CAA 90 bp | GGTCCAGACCTCGTGAGCAGATGCATCACATGGTCCTGGGTCATGTaGCCGTACTTGGTAACGTTCTTCACAGGCCCAAGGAGCATGTTA | + |
|
Preference number: 6 (lower is better) Translates to: GPDLVSRCITWSWVM*PYLVTFFTGPRSML Trigger: TAACATGCTCCTTGGGCCTGTGAAGAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAGGTCTGGACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CCA 72 bp | GGTCCAGACCTCGTGAGCAGATGCATCACATGGTCCTaGGTCATGTTGCCGTACTTGGTAACGTTCTTCACA | + |
|
Preference number: 6 (lower is better) Translates to: GPDLVSRCITWS*VMLPYLVTFFT Trigger: TGTGAAGAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAGGTCTGGACC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CAA 90 bp | CTCGTGAGCAGATGCATCACATGGTCCTGGGTCATGTTGCCGTACTaGGTAACGTTCTTCACAGGCCCAAGGAGCATGTTATCCATGGAC | + |
|
Preference number: 6 (lower is better) Translates to: LVSRCITWSWVMLPY*VTFFTGPRSMLSMD Trigger: GTCCATGGATAACATGCTCCTTGGGCCTGTGAAGAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCTGCTCACGAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS GCA 72 bp | TCCAGGGAGTTCTTGCTCATCTCAAACAAGAGCCACTaGTTCATCCAGCTCTCGAAGATCTTCCAGTTCACG | + |
|
Preference number: 6 (lower is better) Translates to: SREFLLISNKSH*FIQLSKIFQFT Trigger: CGTGAACTGGAAGATCTTCGAGAGCTGGATGAAGCAGTGGCTCTTGTTTGAGATGAGCAAGAACTCCCTGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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| CDS CAA 72 bp | AGATGCATCACATGGTCCTGGGTCATGTTGCCGTACTaGGTAACGTTCTTCACAGGCCCAAGGAGCATGTTA | + |
|
Preference number: 6 (lower is better) Translates to: RCITWSWVMLPY*VTFFTGPRSML Trigger: TAACATGCTCCTTGGGCCTGTGAAGAACGTTACCAAGTACGGCAACATGACCCAGGACCATGTGATGCATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050487.16 ENSMUST00000097563.9 ENSMUST00000167610.2 |
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