Pregenerated sensors for CD68 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000018774Ensembl transcript IDs: ENSMUST00000018918.12, ENSMUST00000108654.3
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | CAGAGAAGGAAGGTAACTGTTGAGTCAGTGGCATGGTaGAGAGATGAGGCGCTCCTTGGTGGCTTACACAGT | + |
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Preference number: 3 (lower is better) Translates to: QRRKVTVESVAW*RDEALLGGLHS Trigger: ACTGTGTAAGCCACCAAGGAGCGCCTCATCTCTTCACCATGCCACTGACTCAACAGTTACCTTCCTTCTCTG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000018918.12 |
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| CDS CCA 90 bp | GGAGCCGTTGGCCCACGTGTAGTTCCCAAGAGCCCCCTTGGACCTTaGACTAGGCGAGGGTGGAGGTGGTCCAGGGTGAGGGCCAACAGT | + |
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Preference number: 5 (lower is better) Translates to: GAVGPRVVPKSPLGP*TRRGWRWSRVRANS Trigger: ACTGTTGGCCCTCACCCTGGACCACCTCCACCCTCGCCTAGTCCAAGGTCCAAGGGGGCTCTTGGGAACTACACGTGGGCCAACGGCTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 90 bp | CGTGTAGTTCCCAAGAGCCCCCTTGGACCTTGGACTAGGCGAGGGTaGAGGTGGTCCAGGGTGAGGGCCAACAGTGGAGGATCTTGGACT | + |
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Preference number: 5 (lower is better) Translates to: RVVPKSPLGPWTRRG*RWSRVRANSGGSWT Trigger: AGTCCAAGATCCTCCACTGTTGGCCCTCACCCTGGACCACCTCCACCCTCGCCTAGTCCAAGGTCCAAGGGGGCTCTTGGGAACTACACG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 90 bp | AGGCCGAGGAGGACCAGGCCAATGATGAGAGGCAGCAAGAGGGACTaGTCACGGTTGCAAGAGAAACATGGCCCGAAGTGTCCCTTGTCA | + |
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Preference number: 5 (lower is better) Translates to: RPRRTRPMMRGSKRD*SRLQEKHGPKCPLS Trigger: TGACAAGGGACACTTCGGGCCATGTTTCTCTTGCAACCGTGACCAGTCCCTCTTGCTGCCTCTCATCATTGGCCTGGTCCTCCTCGGCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS TCA 90 bp | ACAGCAGAAGCTTTGGCCCAAGGGAGCTTGGAGCTCTCGAAGAGATaGATTCTGCGCCATGAATGTCCACTGTGCTGCCTGTGGGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: TAEALAQGSLELSKR*ILRHECPLCCLWEG Trigger: TCCTTCCCACAGGCAGCACAGTGGACATTCATGGCGCAGAATTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGGCCAAAGCTTCTGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS TCA 90 bp | GGCCCAAGGGAGCTTGGAGCTCTCGAAGAGATGAATTCTGCGCCATaGATGTCCACTGTGCTGCCTGTGGGAAGGACACATTGTATTCCA | + |
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Preference number: 5 (lower is better) Translates to: GPRELGALEEMNSAP*MSTVLPVGRTHCIP Trigger: TGGAATACAATGTGTCCTTCCCACAGGCAGCACAGTGGACATTCATGGCGCAGAATTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS GCA 90 bp | AAGCTTTGGCCCAAGGGAGCTTGGAGCTCTCGAAGAGATGAATTCTaGGCCATGAATGTCCACTGTGCTGCCTGTGGGAAGGACACATTG | + |
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Preference number: 5 (lower is better) Translates to: KLWPKGAWSSRRDEF*AMNVHCAACGKDTL Trigger: CAATGTGTCCTTCCCACAGGCAGCACAGTGGACATTCATGGCGCAGAATTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGGCCAAAGCTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 90 bp | ACTATGCTTGCATTTCCACAGCAGAAGCTTTGGCCCAAGGGAGCTTaGAGCTCTCGAAGAGATGAATTCTGCGCCATGAATGTCCACTGT | + |
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Preference number: 5 (lower is better) Translates to: TMLAFPQQKLWPKGA*SSRRDEFCAMNVHC Trigger: ACAGTGGACATTCATGGCGCAGAATTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGGCCAAAGCTTCTGCTGTGGAAATGCAAGCATAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | CCCAAGAGCCCCCTTGGACCTTGGACTAGGCGAGGGTaGAGGTGGTCCAGGGTGAGGGCCAACAGTGGAGGA | + |
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Preference number: 6 (lower is better) Translates to: PKSPLGPWTRRG*RWSRVRANSGG Trigger: TCCTCCACTGTTGGCCCTCACCCTGGACCACCTCCACCCTCGCCTAGTCCAAGGTCCAAGGGGGCTCTTGGG 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | TTTGGGCTTGGAGCTGAACACAAGGCTGGGAGCCGTTaGCCCACGTGTAGTTCCCAAGAGCCCCCTTGGACC | + |
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Preference number: 6 (lower is better) Translates to: FGLGAEHKAGSR*PTCSSQEPPWT Trigger: GGTCCAAGGGGGCTCTTGGGAACTACACGTGGGCCAACGGCTCCCAGCCTTGTGTTCAGCTCCAAGCCCAAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | CAGCAAGAGGGACTGGTCACGGTTGCAAGAGAAACATaGCCCGAAGTGTCCCTTGTCAGGCAGCTGAGCAGC | + |
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Preference number: 6 (lower is better) Translates to: QQEGLVTVARET*PEVSLVRQLSS Trigger: GCTGCTCAGCTGCCTGACAAGGGACACTTCGGGCCATGTTTCTCTTGCAACCGTGACCAGTCCCTCTTGCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS TCA 72 bp | GAGAAACATGGCCCGAAGTGTCCCTTGTCAGGCAGCTaGGCAGCCTGTAGCCTTAGAGAGAGCAGGTCAAGG | + |
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Preference number: 6 (lower is better) Translates to: EKHGPKCPLSGS*AACSLRESRSR Trigger: CCTTGACCTGCTCTCTCTAAGGCTACAGGCTGCTCAGCTGCCTGACAAGGGACACTTCGGGCCATGTTTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS TCA 72 bp | GCTTTGGCCCAAGGGAGCTTGGAGCTCTCGAAGAGATaGATTCTGCGCCATGAATGTCCACTGTGCTGCCTG | + |
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Preference number: 6 (lower is better) Translates to: ALAQGSLELSKR*ILRHECPLCCL Trigger: CAGGCAGCACAGTGGACATTCATGGCGCAGAATTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGGCCAAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS GCA 72 bp | CCCAAGGGAGCTTGGAGCTCTCGAAGAGATGAATTCTaGGCCATGAATGTCCACTGTGCTGCCTGTGGGAAG | + |
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Preference number: 6 (lower is better) Translates to: PKGAWSSRRDEF*AMNVHCAACGK Trigger: CTTCCCACAGGCAGCACAGTGGACATTCATGGCGCAGAATTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | AGGTGGTCCAGGGTGAGGGCCAACAGTGGAGGATCTTaGACTAGTAGCAGTGCCATTTGTGGTGGGAGAAAC | + |
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Preference number: 6 (lower is better) Translates to: RWSRVRANSGGS*TSSSAICGGRN Trigger: GTTTCTCCCACCACAAATGGCACTGCTACTAGTCCAAGATCCTCCACTGTTGGCCCTCACCCTGGACCACCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | AGGACCAGGCCAATGATGAGAGGCAGCAAGAGGGACTaGTCACGGTTGCAAGAGAAACATGGCCCGAAGTGT | + |
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Preference number: 6 (lower is better) Translates to: RTRPMMRGSKRD*SRLQEKHGPKC Trigger: ACACTTCGGGCCATGTTTCTCTTGCAACCGTGACCAGTCCCTCTTGCTGCCTCTCATCATTGGCCTGGTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS GCA 72 bp | CAGGTCAAGGTGAACAGCTGGAGAAAGAACTATGCTTaGATTTCCACAGCAGAAGCTTTGGCCCAAGGGAGC | + |
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Preference number: 6 (lower is better) Translates to: QVKVNSWRKNYA*ISTAEALAQGS Trigger: GCTCCCTTGGGCCAAAGCTTCTGCTGTGGAAATGCAAGCATAGTTCTTTCTCCAGCTGTTCACCTTGACCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | TGTGCTTTCTGTGGCTGTAGGTGTCATCGTGAAGGATaGCAGGAGAGTAACGGCCTTTTTGTGAGGACAGTC | + |
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Preference number: 6 (lower is better) Translates to: CAFCGCRCHREG*QESNGLFVRTV Trigger: GACTGTCCTCACAAAAAGGCCGTTACTCTCCTGCCATCCTTCACGATGACACCTACAGCCACAGAAAGCACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | GCATTTCCACAGCAGAAGCTTTGGCCCAAGGGAGCTTaGAGCTCTCGAAGAGATGAATTCTGCGCCATGAAT | + |
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Preference number: 6 (lower is better) Translates to: AFPQQKLWPKGA*SSRRDEFCAMN Trigger: ATTCATGGCGCAGAATTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGGCCAAAGCTTCTGCTGTGGAAATGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS GCA 72 bp | AGAGCAGGTCAAGGTGAACAGCTGGAGAAAGAACTATaGTTGCATTTCCACAGCAGAAGCTTTGGCCCAAGG | + |
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Preference number: 6 (lower is better) Translates to: RAGQGEQLEKEL*LHFHSRSFGPR Trigger: CCTTGGGCCAAAGCTTCTGCTGTGGAAATGCAAGCATAGTTCTTTCTCCAGCTGTTCACCTTGACCTGCTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CCA 72 bp | GAAAGAACTATGCTTGCATTTCCACAGCAGAAGCTTTaGCCCAAGGGAGCTTGGAGCTCTCGAAGAGATGAA | + |
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Preference number: 6 (lower is better) Translates to: ERTMLAFPQQKL*PKGAWSSRRDE Trigger: TTCATCTCTTCGAGAGCTCCAAGCTCCCTTGGGCCAAAGCTTCTGCTGTGGAAATGCAAGCATAGTTCTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000018918.12 ENSMUST00000108654.3 |
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| CDS CAA 90 bp | TGGGATTCAAAACAGATATGCCCCAAGCCTTTCTTCCACCCTGAATaGGGTATAGGATTCGGATTTGAATTTGGGCTTGGAGCTGAACAC | + |
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Preference number: 6 (lower is better) Translates to: WDSKQICPKPFFHPE*GIGFGFEFGLGAEH Trigger: GTGTTCAGCTCCAAGCCCAAATTCAAATCCGAATCCTATACCCAATTCAGGGTGGAAGAAAGGCTTGGGGCATATCTGTTTTGAATCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018918.12 |
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| CDS GCA 72 bp | CCTGGACCTTGGTTTTGTTGGGATTCAAAACAGATATaGCCCAAGCCTTTCTTCCACCCTGAATTGGGTATA | + |
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Preference number: 6 (lower is better) Translates to: PGPWFCWDSKQI*PKPFFHPELGI Trigger: TATACCCAATTCAGGGTGGAAGAAAGGCTTGGGGCATATCTGTTTTGAATCCCAACAAAACCAAGGTCCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000018918.12 |
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| CDS CAA 72 bp | AAACAGATATGCCCCAAGCCTTTCTTCCACCCTGAATaGGGTATAGGATTCGGATTTGAATTTGGGCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: KQICPKPFFHPE*GIGFGFEFGLG Trigger: TCCAAGCCCAAATTCAAATCCGAATCCTATACCCAATTCAGGGTGGAAGAAAGGCTTGGGGCATATCTGTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000018918.12 |
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