Pregenerated sensors for CD63 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025351

Ensembl transcript IDs: ENSMUST00000026407.9, ENSMUST00000105229.9, ENSMUST00000219317.2, ENSMUST00000220308.2

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CCCACAGCAGCCCACAAAGGCCACCAGGAAGAGGAAGGCACCCACTaGAATGATGACCACAGGCAACAGCGAGCCAGCAGTAGTCTCATG	+
Preference number: 5 (lower is better) Translates to: PTAAHKGHQEEEGTH*NDDHRQQRASSSLM Trigger: CATGAGACTACTGCTGGCTCGCTGTTGCCTGTGGTCATCATTGCAGTGGGTGCCTTCCTCTTCCTGGTGGCCTTTGTGGGCTGCTGTGGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2 ENSMUST00000220308.2
CDS TCA 90 bp	GAGCCAGCAGTAGTCTCATGGGTAATGGCCTGCTTCAAGACAACCTaGACCGCTACACCAATGGCGATCAATCCCACTGCACAGGCGCAG	+
Preference number: 5 (lower is better) Translates to: EPAVVSWVMACFKTT*TATPMAINPTAQAQ Trigger: CTGCGCCTGTGCAGTGGGATTGATCGCCATTGGTGTAGCGGTTCAGGTTGTCTTGAAGCAGGCCATTACCCATGAGACTACTGCTGGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2 ENSMUST00000220308.2
CDS GCA 90 bp	CTTCAAGACAACCTGAACCGCTACACCAATGGCGATCAATCCCACTaGACAGGCGCAGAAGGCCAGCAGGAGAACGTAGAGCAAAAACTT	+
Preference number: 5 (lower is better) Translates to: LQDNLNRYTNGDQSH*TGAEGQQENVEQKL Trigger: AAGTTTTTGCTCTACGTTCTCCTGCTGGCCTTCTGCGCCTGTGCAGTGGGATTGATCGCCATTGGTGTAGCGGTTCAGGTTGTCTTGAAG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2 ENSMUST00000220308.2
CDS CCA 90 bp	TTCTTCCTTAGCCATATTGCTATAGTCTCCACGCAGCCCTGGGTATaGATAGTGGATTCCTTGAAATCATTCCCACAGCCCACAGTTATG	+
Preference number: 5 (lower is better) Translates to: FFLSHIAIVSTQPWV*IVDSLKSFPQPTVM Trigger: CATAACTGTGGGCTGTGGGAATGATTTCAAGGAATCCACTATCCATACCCAGGGCTGCGTGGAGACTATAGCAATATGGCTAAGGAAGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2
CDS CCA 90 bp	AGTATGTTCTTCCTTAGCCATATTGCTATAGTCTCCACGCAGCCCTaGGTATGGATAGTGGATTCCTTGAAATCATTCCCACAGCCCACA	+
Preference number: 5 (lower is better) Translates to: SMFFLSHIAIVSTQP*VWIVDSLKSFPQPT Trigger: TGTGGGCTGTGGGAATGATTTCAAGGAATCCACTATCCATACCCAGGGCTGCGTGGAGACTATAGCAATATGGCTAAGGAAGAACATACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2
CDS GCA 72 bp	AACCTGAACCGCTACACCAATGGCGATCAATCCCACTaGACAGGCGCAGAAGGCCAGCAGGAGAACGTAGAG	+
Preference number: 6 (lower is better) Translates to: NLNRYTNGDQSH*TGAEGQQENVE Trigger: CTCTACGTTCTCCTGCTGGCCTTCTGCGCCTGTGCAGTGGGATTGATCGCCATTGGTGTAGCGGTTCAGGTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2 ENSMUST00000220308.2
CDS CCA 72 bp	TGGCCTGCTTCAAGACAACCTGAACCGCTACACCAATaGCGATCAATCCCACTGCACAGGCGCAGAAGGCCA	+
Preference number: 6 (lower is better) Translates to: WPASRQPEPLHQ*RSIPLHRRRRP Trigger: TGGCCTTCTGCGCCTGTGCAGTGGGATTGATCGCCATTGGTGTAGCGGTTCAGGTTGTCTTGAAGCAGGCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2 ENSMUST00000220308.2
CDS CAA 90 bp	TGGATAGTGGATTCCTTGAAATCATTCCCACAGCCCACAGTTATGTaGATGCAGCAAGAATCGGGGACTCTGTCCTTGGCCATGCCGGGG	+
Preference number: 6 (lower is better) Translates to: WIVDSLKSFPQPTVM*MQQESGTLSLAMPG Trigger: CCCCGGCATGGCCAAGGACAGAGTCCCCGATTCTTGCTGCATCAACATAACTGTGGGCTGTGGGAATGATTTCAAGGAATCCACTATCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2
CDS CAA 72 bp	GATTCCTTGAAATCATTCCCACAGCCCACAGTTATGTaGATGCAGCAAGAATCGGGGACTCTGTCCTTGGCC	+
Preference number: 6 (lower is better) Translates to: DSLKSFPQPTVM*MQQESGTLSLA Trigger: GGCCAAGGACAGAGTCCCCGATTCTTGCTGCATCAACATAACTGTGGGCTGTGGGAATGATTTCAAGGAATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2
CDS CAA 72 bp	GTCTCCACGCAGCCCTGGGTATGGATAGTGGATTCCTaGAAATCATTCCCACAGCCCACAGTTATGTTGATG	+
Preference number: 6 (lower is better) Translates to: VSTQPWVWIVDS*KSFPQPTVMLM Trigger: CATCAACATAACTGTGGGCTGTGGGAATGATTTCAAGGAATCCACTATCCATACCCAGGGCTGCGTGGAGAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000026407.9 ENSMUST00000105229.9 ENSMUST00000219317.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu