Pregenerated sensors for CD55 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026399Ensembl transcript IDs: ENSMUST00000027650.13, ENSMUST00000140400.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | CGTGGTCTCCAACCACTTCCTCTTAATTTGCCATCAACTAATTCAAAAGGTTCATATCCCATGTTGGCCTaGACCTCATCAGGTAACGCA | + |
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Preference number: 2 (lower is better) Translates to: RGLQPLPLNLPSTNSKGSYPMLA*TSSGNA Trigger: TGCGTTACCTGATGAGGTTCAGGCCAACATGGGATA...TGAACCTTTTGAATTAGTTGATGGCAAATTAAGAGGAAGTGGTTGGAGACCACG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR CAA 90 bp | GAACCTCATCAGGTAACGCAGAATGACCTTGAACTTCTGATCTTCTaGCCTTCATCTCCCAAATACTGGGATTATTATAACTGTGTGCTG | + |
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Preference number: 2 (lower is better) Translates to: EPHQVTQNDLELLIF*PSSPKYWDYYNCVL Trigger: CAGCACACAGTTATAATAATCCCAGTATTTGGGAGATGAAGGCAAGAAGATCAGAAGTTCAAGGTCATTCTGCGTTACCTGATGAGGTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR CAA 90 bp | GAATGTGCCACCTCTGTGGCGATTCTGCTTACAAGAACAGAAGTTTaGTTTGGGGACTTTGGTTTACTTTTGCAATCTAATCAGTATGTT | + |
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Preference number: 2 (lower is better) Translates to: ECATSVAILLTRTEV*FGDFGLLLQSNQYV Trigger: AACATACTGATTAGATTGCAAAAGTAAACCAAAGTCCCCAAACAAAACTTCTGTTCTTGTAAGCAGAATCGCCACAGAGGTGGCACATTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR TCA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTCTGGCACTTGGCCTATaGCAGAGACATAAAACTGGT | + |
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Preference number: 2 (lower is better) Translates to: KRIHNIRHGLPLPTILACLALGL*QRHKTG Trigger: ACCAGTTTTATGTCTCTGTCATAGGCCAAGTGCCAG...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| 3UTR-3UTR GCA 90 bp | GTAACGCAGAATGACCTTGAACTTCTGATCTTCTTGCCTTCATCTCCCAAATACAAGACAATGACAGCATaGAGAACAAACAACACTATT | + |
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Preference number: 2 (lower is better) Translates to: VTQNDLELLIFLPSSPKYKTMTA*RTNNTI Trigger: AATAGTGTTGTTTGTTCTGCATGCTGTCATTGTCTT...GTATTTGGGAGATGAAGGCAAGAAGATCAGAAGTTCAAGGTCATTCTGCGTTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR TCA 90 bp | TGTAGATGTTACGATACCATCAGACACTATTATACAAATGGTCAGTCTGTGAAAATGACCTTGAACTTCTaGTCTTCTTGCCTTCATCTC | + |
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Preference number: 2 (lower is better) Translates to: CRCYDTIRHYYTNGQSVKMTLNF*SSCLHL Trigger: GAGATGAAGGCAAGAAGATCAGAAGTTCAAGGTCAT...TTTCACAGACTGACCATTTGTATAATAGTGTCTGATGGTATCGTAACATCTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR GCA 90 bp | ACCTGTTCATGCATCCATCCATCTATGATGTATGTTTGTTTGTTTGTTTGTTTGCCTCTGTGGCGATTCTaGTTACAAGAACAGAAGTTT | + |
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Preference number: 2 (lower is better) Translates to: TCSCIHPSMMYVCLFVCLPLWRF*LQEQKF Trigger: AAACTTCTGTTCTTGTAAGCAGAATCGCCACAGAGG...CAAACAAACAAACAAACAAACATACATCATAGATGGATGGATGCATGAACAGGT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR GCA 90 bp | AGGTTCAACATTCTTCATTTCTTTCTGTCTGTATGTCTGTCTGTCTGTCTGTCTATCTATACCTGTTCATaGATCCATCCATCTATGATG | + |
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Preference number: 2 (lower is better) Translates to: RFNILHFFLSVCLSVCLSIYTCS*IHPSMM Trigger: CATCATAGATGGATGGATGCATGAACAGGTATAGAT...AGACAGACAGACAGACAGACATACAGACAGAAAGAAATGAAGAATGTTGAACCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR CAA 90 bp | CCATCTATGATGTATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTaGTTTGTTACTACAGAGTCTCAGGTATCCCATGTTGGCCTGAAC | + |
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Preference number: 2 (lower is better) Translates to: PSMMYVCLFVCLFVC*FVTTESQVSHVGLN Trigger: GTTCAGGCCAACATGGGATACCTGAGACTCTGTAGTAACAAACAAACAAACAAACAAACAAACAAACAAACAAACATACATCATAGATGG 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR TCA 90 bp | TGTAGATGTTACGATACCATCAGACACTATTATACAAATGGTCAGTCTGTGAAAACAGTGAACTATTCCTaGCTCAGATCTGTGTTTACA | + |
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Preference number: 2 (lower is better) Translates to: CRCYDTIRHYYTNGQSVKTVNYS*LRSVFT Trigger: TGTAAACACAGATCTGAGTCAGGAATAGTTCACTGT...TTTCACAGACTGACCATTTGTATAATAGTGTCTGATGGTATCGTAACATCTACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR CAA 90 bp | GGAGCTCAGAGATTTAGGCTTGTGGTACAAGCACTGTATCAAGTGAGCTTCCACACAAGAACAGAAGTTTaGTTTGGGGACTTTGGTTTA | + |
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Preference number: 3 (lower is better) Translates to: GAQRFRLVVQALYQVSFHTRTEV*FGDFGL Trigger: TAAACCAAAGTCCCCAAACAAAACTTCTGTTCTTGT...GTGGAAGCTCACTTGATACAGTGCTTGTACCACAAGCCTAAATCTCTGAGCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR CAA 90 bp | GTAACGCAGAATGACCTTGAACTTCTGATCTTCTTGCCTTCATCTCCCAAATACGAACAGAAGTTTTGTTaGGGGACTTTGGTTTACTTT | + |
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Preference number: 3 (lower is better) Translates to: VTQNDLELLIFLPSSPKYEQKFC*GTLVYF Trigger: AAAGTAAACCAAAGTCCCCAAACAAAACTTCTGTTC...GTATTTGGGAGATGAAGGCAAGAAGATCAGAAGTTCAAGGTCATTCTGCGTTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR-3UTR CAA 90 bp | AGGTTCAACATTCTTCATTTCTTTCTGTCTGTATGTCTGTCTGTCTGTCTGTCTGAACTTCTGATCTTCTaGCCTTCATCTCCCAAATAC | + |
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Preference number: 3 (lower is better) Translates to: RFNILHFFLSVCLSVCLSELLIF*PSSPKY Trigger: GTATTTGGGAGATGAAGGCAAGAAGATCAGAAGTTC...AGACAGACAGACAGACAGACATACAGACAGAAAGAAATGAAGAATGTTGAACCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR TCA 72 bp | TGCAGTGTATCCTTCTTAAACACAGTGAACTATTCCTaGCTCAGATCTGTGTTTACAGGTAAATTACTAAAC | + |
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Preference number: 3 (lower is better) Translates to: CSVSFLNTVNYS*LRSVFTGKLLN Trigger: GTTTAGTAATTTACCTGTAAACACAGATCTGAGTCAGGAATAGTTCACTGTGTTTAAGAAGGATACACTGCA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR GCA 72 bp | TTACTAAACGTGGTCTCCAACCACTTCCTCTTAATTTaGCATCAACTAATTCAAAAGGTTCAACATTCTTCA | + |
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Preference number: 3 (lower is better) Translates to: LLNVVSNHFLLI*HQLIQKVQHSS Trigger: TGAAGAATGTTGAACCTTTTGAATTAGTTGATGGCAAATTAAGAGGAAGTGGTTGGAGACCACGTTTAGTAA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | CAGACACTATTATACAAATGGTCAGTCTGTGAAAGATACCTTCCTAGGGCATTTCAGCGGAGGCGGCGGTaGTGGCCGAGTCCTAGGCGC | + |
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Preference number: 4 (lower is better) Translates to: QTLLYKWSVCERYLPRAFQRRRR*WPSPRR Trigger: GCGCCTAGGACTCGGCCATCACCGCCGCCTCCGCTG...AAATGCCCTAGGAAGGTATCTTTCACAGACTGACCATTTGTATAATAGTGTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | TGCAGCTCTTTAGACAAGAACCATGTTGACCTCCGTTTCTGTGCTTCTTCTGTCGCACTCAATGCTACCTaGCTGATTGGCCAAATGACC | + |
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Preference number: 4 (lower is better) Translates to: CSSLDKNHVDLRFCASSVALNAT*LIGQMT Trigger: GGTCATTTGGCCAATCAGTCAGGTAGCATTGAGTGC...GACAGAAGAAGCACAGAAACGGAGGTCAACATGGTTCTTGTCTAAAGAGCTGCA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR GCA 90 bp | GGAGCTCAGAGATTTAGGCTTGTGGTACAAGCACTGTATCAAGTGAGCTTCCACGTTATTACACGAGTATaGCACTTTGCTTTGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: GAQRFRLVVQALYQVSFHVITRV*HFALLS Trigger: GCTGAGCAAAGCAAAGTGGCATACTCGTGTAATAAC...GTGGAAGCTCACTTGATACAGTGCTTGTACCACAAGCCTAAATCTCTGAGCTCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | TGCAGCTCTTTAGACAAGAACCATGTTGACCTCCGTTTCTGTGCTTCTTCTGTCGGTGCCCAGAAACACTaGATTTTGATCGTTTTCCTG | + |
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Preference number: 4 (lower is better) Translates to: CSSLDKNHVDLRFCASSVGAQKH*ILIVFL Trigger: CAGGAAAACGATCAAAATGCAGTGTTTCTGGGCACC...GACAGAAGAAGCACAGAAACGGAGGTCAACATGGTTCTTGTCTAAAGAGCTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR CCA 90 bp | GGAGCTCAGAGATTTAGGCTTGTGGTACAAGCACTGTATCAAGTGAGCTTCCACGGGGGTTCCTGTACTTaGAACATTAATTGTTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: GAQRFRLVVQALYQVSFHGGSCT*NINCWF Trigger: AAACCAACAATTAATGTTCCAAGTACAGGAACCCCC...GTGGAAGCTCACTTGATACAGTGCTTGTACCACAAGCCTAAATCTCTGAGCTCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | ACCTGTTCATGCATCCATCCATCTATGATGTATGTTTGTTTGTTTGTTTGTTTGTCTGTTGTGGGTTTCTaGGGCGTTGAGGGGGTTCCT | + |
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Preference number: 4 (lower is better) Translates to: TCSCIHPSMMYVCLFVCLSVVGF*GVEGVP Trigger: AGGAACCCCCTCAACGCCTCAGAAACCCACAACAGA...CAAACAAACAAACAAACAAACATACATCATAGATGGATGGATGCATGAACAGGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | CAGACACTATTATACAAATGGTCAGTCTGTGAAAGATACCTTCCTAGGGCATTTACTGTGGAAGGTTTCTaGGGAGTTGGTTGGTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: QTLLYKWSVCERYLPRAFTVEGF*GVGWSP Trigger: AGGAGACCAACCAACTCCTCAGAAACCTTCCACAGT...AAATGCCCTAGGAAGGTATCTTTCACAGACTGACCATTTGTATAATAGTGTCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | TGCAGCTCTTTAGACAAGAACCATGTTGACCTCCGTTTCTGTGCTTCTTCTGTCCTATGTTTCCCACAGTaGTGGCAATTTCTTCTAACT | + |
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Preference number: 4 (lower is better) Translates to: CSSLDKNHVDLRFCASSVLCFPQ*WQFLLT Trigger: AGTTAGAAGAAATTGCCATCACTGTGGGAAACATAG...GACAGAAGAAGCACAGAAACGGAGGTCAACATGGTTCTTGTCTAAAGAGCTGCA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR CCA 90 bp | GGAGCTCAGAGATTTAGGCTTGTGGTACAAGCACTGTATCAAGTGAGCTTCCACTGGAACATTAATTGTTaGTTTCTTCGTTGGGACCTT | + |
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Preference number: 4 (lower is better) Translates to: GAQRFRLVVQALYQVSFHWNINC*FLRWDL Trigger: AAGGTCCCAACGAAGAAACCAACAATTAATGTTCCA...GTGGAAGCTCACTTGATACAGTGCTTGTACCACAAGCCTAAATCTCTGAGCTCC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CCA 90 bp | TGCAGCTCTTTAGACAAGAACCATGTTGACCTCCGTTTCTGTGCTTCTTCTGTCGGGGGTTCCTGTACTTaGAACATTAATTGTTGGTTT | + |
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Preference number: 4 (lower is better) Translates to: CSSLDKNHVDLRFCASSVGGSCT*NINCWF Trigger: AAACCAACAATTAATGTTCCAAGTACAGGAACCCCC...GACAGAAGAAGCACAGAAACGGAGGTCAACATGGTTCTTGTCTAAAGAGCTGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR TCA 90 bp | TGCAGCTCTTTAGACAAGAACCATGTTGACCTCCGTTTCTGTGCTTCTTCTGTCTCTTCTAACTCCCTGTaGGTCAAACTTACCATATAT | + |
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Preference number: 4 (lower is better) Translates to: CSSLDKNHVDLRFCASSVSSNSL*VKLTIY Trigger: ATATATGGTAAGTTTGACTCACAGGGAGTTAGAAGA...GACAGAAGAAGCACAGAAACGGAGGTCAACATGGTTCTTGTCTAAAGAGCTGCA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR GCA 90 bp | TCTGTGGCGATTCTGCTTACAAGAACAGAAGTTTTGTTTGGGGACTTTGGTTTAGCCTGTACCCTGGGTTaGATGAGAAGTTTATTTCTG | + |
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Preference number: 4 (lower is better) Translates to: SVAILLTRTEVLFGDFGLACTLG*MRSLFL Trigger: CAGAAATAAACTTCTCATGCAACCCAGGGTACAGGC...TAAACCAAAGTCCCCAAACAAAACTTCTGTTCTTGTAAGCAGAATCGCCACAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CCA 90 bp | AGGTTCAACATTCTTCATTTCTTTCTGTCTGTATGTCTGTCTGTCTGTCTGTCTGCAAGTTGCTTTTCCTaGGAGTGGAGGTTGTTTTCG | + |
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Preference number: 4 (lower is better) Translates to: RFNILHFFLSVCLSVCLSASCFS*EWRLFS Trigger: CGAAAACAACCTCCACTCCCAGGAAAAGCAACTTGC...AGACAGACAGACAGACAGACATACAGACAGAAAGAAATGAAGAATGTTGAACCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTACTGTGGAAGGTTTCTaGGGAGTTGGTTGGTCTCCT | + |
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Preference number: 4 (lower is better) Translates to: KRIHNIRHGLPLPTILACTVEGF*GVGWSP Trigger: AGGAGACCAACCAACTCCTCAGAAACCTTCCACAGT...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR TCA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTATTGGCCAAATGACCTaGAGCTGTCCTAAGACTCCC | + |
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Preference number: 4 (lower is better) Translates to: KRIHNIRHGLPLPTILACIGQMT*SCPKTP Trigger: GGGAGTCTTAGGACAGCTTCAGGTCATTTGGCCAAT...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR GCA 90 bp | TGTTTGTTTGTTTGTTTGTTTGTTTGTTACTACAGAGTCTCAGGTATCCCATGTCAAACTTGGAGTGTCTaGCCAAGATTGGCCTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: CLFVCLFVCYYRVSGIPCQTWSV*PRLAWH Trigger: ATGCCAGGCCAATCTTGGGCAGACACTCCAAGTTTG...ACATGGGATACCTGAGACTCTGTAGTAACAAACAAACAAACAAACAAACAAACA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | CGTGGTCTCCAACCACTTCCTCTTAATTTGCCATCAACTAATTCAAAAGGTTCATATGCCACTTTGCTTTaGTCAGCAAACTTGGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: RGLQPLPLNLPSTNSKGSYATLL*SANLEC Trigger: ACACTCCAAGTTTGCTGAGCAAAGCAAAGTGGCATA...TGAACCTTTTGAATTAGTTGATGGCAAATTAAGAGGAAGTGGTTGGAGACCACG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | TCCAACCACTTCCTCTTAATTTGCCATCAACTAATTCAAAAGGTTCAACATTCTATCCTCAAGGCAAGTTaGTTTTCCTGGGAGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: SNHFLLICHQLIQKVQHSILKAS*FSWEWR Trigger: CCTCCACTCCCAGGAAAAGCAACTTGCCTTGAGGAT...AGAATGTTGAACCTTTTGAATTAGTTGATGGCAAATTAAGAGGAAGTGGTTGGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | TCTGTGGCGATTCTGCTTACAAGAACAGAAGTTTTGTTTGGGGACTTTGGTTTATTCTGGAGCAACACATaGTTTCTCACAGAATGTTTC | + |
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Preference number: 4 (lower is better) Translates to: SVAILLTRTEVLFGDFGLFWSNT*FLTECF Trigger: GAAACATTCTGTGAGAAATCATGTGTTGCTCCAGAA...TAAACCAAAGTCCCCAAACAAAACTTCTGTTCTTGTAAGCAGAATCGCCACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | TCTGTGGCGATTCTGCTTACAAGAACAGAAGTTTTGTTTGGGGACTTTGGTTTAGACAATGTATTTCTGTaGACACTGGAAACTCATCGT | + |
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Preference number: 4 (lower is better) Translates to: SVAILLTRTEVLFGDFGLDNVFL*TLETHR Trigger: ACGATGAGTTTCCAGTGTGCACAGAAATACATTGTC...TAAACCAAAGTCCCCAAACAAAACTTCTGTTCTTGTAAGCAGAATCGCCACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | TCTGTGGCGATTCTGCTTACAAGAACAGAAGTTTTGTTTGGGGACTTTGGTTTATTGGTAACAGGTACATaGTGGGTTGCTGAAACTTTA | + |
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Preference number: 4 (lower is better) Translates to: SVAILLTRTEVLFGDFGLLVTGT*WVAETL Trigger: TAAAGTTTCAGCAACCCAGCATGTACCTGTTACCAA...TAAACCAAAGTCCCCAAACAAAACTTCTGTTCTTGTAAGCAGAATCGCCACAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR CAA 72 bp | CAGGTAACGCAGAATGACCTTGAACTTCTGATCTTCTaGCCTTCATCTCCCAAATACTGGGATTATTATAAC | + |
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Preference number: 4 (lower is better) Translates to: QVTQNDLELLIF*PSSPKYWDYYN Trigger: GTTATAATAATCCCAGTATTTGGGAGATGAAGGCAAGAAGATCAGAAGTTCAAGGTCATTCTGCGTTACCTG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | CAGACACTATTATACAAATGGTCAGTCTGTGAAAGATACCTTCCTAGGGCATTTGTCCTACATCAGACTTaGTCACAGTACAATAAATGC | + |
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Preference number: 4 (lower is better) Translates to: QTLLYKWSVCERYLPRAFVLHQT*SQYNKC Trigger: GCATTTATTGTACTGTGAGCAAGTCTGATGTAGGAC...AAATGCCCTAGGAAGGTATCTTTCACAGACTGACCATTTGTATAATAGTGTCTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTCCATCTTCCCTTAGGTaGCCAGAAACACTGCATTTT | + |
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Preference number: 4 (lower is better) Translates to: KRIHNIRHGLPLPTILACPSSLR*PETLHF Trigger: AAAATGCAGTGTTTCTGGGCACCTAAGGGAAGATGG...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR CCA 90 bp | TGTAGATGTTACGATACCATCAGACACTATTATACAAATGGTCAGTCTGTGAAATGCTTTTCCTGGGAGTaGAGGTTGTTTTCGAAATCC | + |
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Preference number: 4 (lower is better) Translates to: CRCYDTIRHYYTNGQSVKCFSWE*RLFSKS Trigger: GGATTTCGAAAACAACCTCCACTCCCAGGAAAAGCA...TTTCACAGACTGACCATTTGTATAATAGTGTCTGATGGTATCGTAACATCTACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR TCA 90 bp | AGGTTCAACATTCTTCATTTCTTTCTGTCTGTATGTCTGTCTGTCTGTCTGTCTGTTGGTATGTTGATGTaGCCATTATCCAGATCTTTA | + |
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Preference number: 4 (lower is better) Translates to: RFNILHFFLSVCLSVCLSVGMLM*PLSRSL Trigger: TAAAGATCTGGATAATGGTCACATCAACATACCAAC...AGACAGACAGACAGACAGACATACAGACAGAAAGAAATGAAGAATGTTGAACCT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | CGTGGTCTCCAACCACTTCCTCTTAATTTGCCATCAACTAATTCAAAAGGTTCAAGTGATAGCATCACATaGAAAACTGTCAAGGTTATT | + |
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Preference number: 4 (lower is better) Translates to: RGLQPLPLNLPSTNSKGSSDSIT*KTVKVI Trigger: AATAACCTTGACAGTTTTGCATGTGATGCTATCACT...TGAACCTTTTGAATTAGTTGATGGCAAATTAAGAGGAAGTGGTTGGAGACCACG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR GCA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTTTGGTAACAGGTACATaGTGGGTTGCTGAAACTTTA | + |
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Preference number: 4 (lower is better) Translates to: KRIHNIRHGLPLPTILACLVTGT*WVAETL Trigger: TAAAGTTTCAGCAACCCAGCATGTACCTGTTACCAA...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR CCA 90 bp | ACCTGTTCATGCATCCATCCATCTATGATGTATGTTTGTTTGTTTGTTTGTTTGGTAACAGGTACATGCTaGGTTGCTGAAACTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: TCSCIHPSMMYVCLFVCLVTGTC*VAETLT Trigger: AGTTAAAGTTTCAGCAACCCAGCATGTACCTGTTAC...CAAACAAACAAACAAACAAACATACATCATAGATGGATGGATGCATGAACAGGT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CCA 90 bp | AAAACTGTTACTAGAGTTGAAGGACAAATATATCTAAAGCTGAGACTCTTGCTGGTAACAGGTACATGCTaGGTTGCTGAAACTTTAACT | + |
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Preference number: 4 (lower is better) Translates to: KTVTRVEGQIYLKLRLLLVTGTC*VAETLT Trigger: AGTTAAAGTTTCAGCAACCCAGCATGTACCTGTTAC...CAGCAAGAGTCTCAGCTTTAGATATATTTGTCCTTCAACTCTAGTAACAGTTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS-3UTR TCA 90 bp | TGTTTGTTTGTTTGTTTGTTTGTTTGTTACTACAGAGTCTCAGGTATCCCATGTACAGACAACTATGTTTaGCTTGTCTGGAACTTGTTT | + |
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Preference number: 4 (lower is better) Translates to: CLFVCLFVCYYRVSGIPCTDNYV*LVWNLF Trigger: AAACAAGTTCCAGACAAGTCAAACATAGTTGTCTGT...ACATGGGATACCTGAGACTCTGTAGTAACAAACAAACAAACAAACAAACAAACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CCA 90 bp | ACCTGTTCATGCATCCATCCATCTATGATGTATGTTTGTTTGTTTGTTTGTTTGTCCATTGTTGATTTTTaGTGGCTCTGGACAATGTAT | + |
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Preference number: 4 (lower is better) Translates to: TCSCIHPSMMYVCLFVCLSIVDF*WLWTMY Trigger: ATACATTGTCCAGAGCCACCAAAAATCAACAATGGA...CAAACAAACAAACAAACAAACATACATCATAGATGGATGGATGCATGAACAGGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR CAA 72 bp | ATGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTaGTTACTACAGAGTCTCAGGTATCCCATGTTGGCC | + |
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Preference number: 4 (lower is better) Translates to: MFVCLFVCLFVC*LLQSLRYPMLA Trigger: GGCCAACATGGGATACCTGAGACTCTGTAGTAACAAACAAACAAACAAACAAACAAACAAACAAACAAACAT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| 3UTR CAA 72 bp | ATTACTAAACGTGGTCTCCAACCACTTCCTCTTAATTaGCCATCAACTAATTCAAAAGGTTCAACATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: ITKRGLQPLPLN*PSTNSKGSTFF Trigger: GAAGAATGTTGAACCTTTTGAATTAGTTGATGGCAAATTAAGAGGAAGTGGTTGGAGACCACGTTTAGTAAT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CCA 90 bp | TGTAGATGTTACGATACCATCAGACACTATTATACAAATGGTCAGTCTGTGAAAATTGTTGATTTTTGGTaGCTCTGGACAATGTATTTC | + |
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Preference number: 4 (lower is better) Translates to: CRCYDTIRHYYTNGQSVKIVDFW*LWTMYF Trigger: GAAATACATTGTCCAGAGCCACCAAAAATCAACAAT...TTTCACAGACTGACCATTTGTATAATAGTGTCTGATGGTATCGTAACATCTACA 34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CCA 90 bp | TGTAGATGTTACGATACCATCAGACACTATTATACAAATGGTCAGTCTGTGAAATGTAGATGTTCTTATTaGATGACGTACTGTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: CRCYDTIRHYYTNGQSVKCRCSY*MTYCCL Trigger: AAGACAACAGTACGTCATCCAATAAGAACATCTACA...TTTCACAGACTGACCATTTGTATAATAGTGTCTGATGGTATCGTAACATCTACA 34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CCA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTTGTAGATGTTCTTATTaGATGACGTACTGTTGTCTT | + |
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Preference number: 4 (lower is better) Translates to: KRIHNIRHGLPLPTILACCRCSY*MTYCCL Trigger: AAGACAACAGTACGTCATCCAATAAGAACATCTACA...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS CCA 90 bp | TGTTGGTTTCTTCGTTGGGACCTTGGATTTCTCTATGCACCGGGGTaGTGGACTGCTCCATTGTCCTACATCAGACTTGCTCACAGTACA | + |
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Preference number: 5 (lower is better) Translates to: CWFLRWDLGFLYAPG*WTAPLSYIRLAHST Trigger: TGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAGAGAAATCCAAGGTCCCAACGAAGAAACCAACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS GCA 90 bp | TCTTCGTTGGGACCTTGGATTTCTCTATGCACCGGGGTGGTGGACTaGTCCATTGTCCTACATCAGACTTGCTCACAGTACAATAAATGC | + |
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Preference number: 5 (lower is better) Translates to: SSLGPWISLCTGVVD*SIVLHQTCSQYNKC Trigger: GCATTTATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAGAGAAATCCAAGGTCCCAACGAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CCA 90 bp | TGGTTTCTTCGTTGGGACCTTGGATTTCTCTATGCACCGGGGTGGTaGACTGCTCCATTGTCCTACATCAGACTTGCTCACAGTACAATA | + |
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Preference number: 5 (lower is better) Translates to: WFLRWDLGFLYAPGW*TAPLSYIRLAHSTI Trigger: TATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAGAGAAATCCAAGGTCCCAACGAAGAAACCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS TCA 90 bp | GTTGGTTGGTCTCCTGGATTTGGAACACTTTCTGTTGTGGGTTTCTaGGGCGTTGAGGGGGTTCCTGTACTTGGAACATTAATTGTTGGT | + |
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Preference number: 5 (lower is better) Translates to: VGWSPGFGTLSVVGF*GVEGVPVLGTLIVG Trigger: ACCAACAATTAATGTTCCAAGTACAGGAACCCCCTCAACGCCTCAGAAACCCACAACAGAAAGTGTTCCAAATCCAGGAGACCAACCAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000027650.13 ENSMUST00000140400.2 |
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| CDS TCA 90 bp | TGGATGACGTACTGTTGTCTTGGTAACAGGTACATGCTGGGTTGCTaGAACTTTAACTGTGGAAGGTTTCTGAGGAGTTGGTTGGTCTCC | + |
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Preference number: 5 (lower is better) Translates to: WMTYCCLGNRYMLGC*NFNCGRFLRSWLVS Trigger: GGAGACCAACCAACTCCTCAGAAACCTTCCACAGTTAAAGTTTCAGCAACCCAGCATGTACCTGTTACCAAGACAACAGTACGTCATCCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027650.13 ENSMUST00000140400.2 |
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| CDS CCA 90 bp | GTCACTTTCCCCTCGCATTATTCCATTGTTGATTTTTGGTGGCTCTaGACAATGTATTTCTGTGCACACTGGAAACTCATCGTCCCAATC | + |
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Preference number: 5 (lower is better) Translates to: VTFPSHYSIVDFWWL*TMYFCAHWKLIVPI Trigger: GATTGGGACGATGAGTTTCCAGTGTGCACAGAAATACATTGTCCAGAGCCACCAAAAATCAACAATGGAATAATGCGAGGGGAAAGTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS TCA 90 bp | ACAATAAATGCTAGCATTTCCAACCAGGATGAAGCCTTTGTCACATaGATAGGTGACCACCTGGCTATACGTATAAGAGTCACTTTCCCC | + |
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Preference number: 5 (lower is better) Translates to: TINASISNQDEAFVT*IGDHLAIRIRVTFP Trigger: GGGGAAAGTGACTCTTATACGTATAGCCAGGTGGTCACCTATTCATGTGACAAAGGCTTCATCCTGGTTGGAAATGCTAGCATTTATTGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CCA 90 bp | GGAGCAACACATGATTTCTCACAGAATGTTTCGTGGCTCGACCATTaGCCATTTTCAAGACAGACAACTATGTTTGACTTGTCTGGAACT | + |
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Preference number: 5 (lower is better) Translates to: GATHDFSQNVSWLDH*PFSRQTTMFDLSGT Trigger: AGTTCCAGACAAGTCAAACATAGTTGTCTGTCTTGAAAATGGCCAATGGTCGAGCCACGAAACATTCTGTGAGAAATCATGTGTTGCTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CAA 90 bp | TGTAGATGTTACGATACCATCAGACACTATTATACAAATGGTCAGTCTGTGAAATCCTGGGAGTGGAGGTaGTTTTCGAAATCCTGGCCG | + |
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Preference number: 5 (lower is better) Translates to: CRCYDTIRHYYTNGQSVKSWEWR*FSKSWP Trigger: CGGCCAGGATTTCGAAAACAACCTCCACTCCCAGGA...TTTCACAGACTGACCATTTGTATAATAGTGTCTGATGGTATCGTAACATCTACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CAA 90 bp | TGTAGATGTTACGATACCATCAGACACTATTATACAAATGGTCAGTCTGTGAAATGGGTTTCTGAGGCGTaGAGGGGGTTCCTGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: CRCYDTIRHYYTNGQSVKWVSEA*RGFLYL Trigger: CAAGTACAGGAACCCCCTCAACGCCTCAGAAACCCA...TTTCACAGACTGACCATTTGTATAATAGTGTCTGATGGTATCGTAACATCTACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CAA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTTGGGTTTCTGAGGCGTaGAGGGGGTTCCTGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: KRIHNIRHGLPLPTILACWVSEA*RGFLYL Trigger: CAAGTACAGGAACCCCCTCAACGCCTCAGAAACCCA...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS CCA 90 bp | ATAAGAGTCACTTTCCCCTCGCATTATTCCATTGTTGATTTTTGGTaGCTCTGGACAATGTATTTCTGTGCACACTGGAAACTCATCGTC | + |
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Preference number: 5 (lower is better) Translates to: IRVTFPSHYSIVDFW*LWTMYFCAHWKLIV Trigger: GACGATGAGTTTCCAGTGTGCACAGAAATACATTGTCCAGAGCCACCAAAAATCAACAATGGAATAATGCGAGGGGAAAGTGACTCTTAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS-3UTR CAA 90 bp | AAAAGGATTCACAACATAAGACATGGTTTACCTTTGCCAACCATATTAGCATGTCAGAAACACTGCATTTaGATCGTTTTCCTGAGACAG | + |
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Preference number: 5 (lower is better) Translates to: KRIHNIRHGLPLPTILACQKHCI*IVFLRQ Trigger: CTGTCTCAGGAAAACGATCAAAATGCAGTGTTTCTG...ACATGCTAATATGGTTGGCAAAGGTAAACCATGTCTTATGTTGTGAATCCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS CCA 72 bp | AATGTCTGGAGGTGGGCCGCAGTCTCCGCGTACAGTTaGGGACAGCAGCAACAGAGACAGCGACAGCAACGG | + |
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Preference number: 6 (lower is better) Translates to: NVWRWAAVSAYS*GQQQQRQRQQR Trigger: CCGTTGCTGTCGCTGTCTCTGTTGCTGCTGTCCCCAACTGTACGCGGAGACTGCGGCCCACCTCCAGACATT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CAA 72 bp | GAATGTCTGGAGGTGGGCCGCAGTCTCCGCGTACAGTaGGGGACAGCAGCAACAGAGACAGCGACAGCAACG | + |
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Preference number: 6 (lower is better) Translates to: ECLEVGRSLRVQ*GTAATETATAT Trigger: CGTTGCTGTCGCTGTCTCTGTTGCTGCTGTCCCCAACTGTACGCGGAGACTGCGGCCCACCTCCAGACATTC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CCA 72 bp | GTGTCTGCCCAAGATTGGCCTGGCATTAGGAATGTCTaGAGGTGGGCCGCAGTCTCCGCGTACAGTTGGGGA | + |
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Preference number: 6 (lower is better) Translates to: VSAQDWPGIRNV*RWAAVSAYSWG Trigger: TCCCCAACTGTACGCGGAGACTGCGGCCCACCTCCAGACATTCCTAATGCCAGGCCAATCTTGGGCAGACAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS GCA 72 bp | TTGTTGGTTTCTTCGTTGGGACCTTGGATTTCTCTATaGACCGGGGTGGTGGACTGCTCCATTGTCCTACAT | + |
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Preference number: 6 (lower is better) Translates to: LLVSSLGPWISL*TGVVDCSIVLH Trigger: ATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAGAGAAATCCAAGGTCCCAACGAAGAAACCAACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CAA 72 bp | ATCCTCAAGGCAAGTTGCTTTTCCTGGGAGTGGAGGTaGTTTTCGAAATCCTGGCCGACACTCATATTCCAC | + |
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Preference number: 6 (lower is better) Translates to: ILKASCFSWEWR*FSKSWPTLIFH Trigger: GTGGAATATGAGTGTCGGCCAGGATTTCGAAAACAACCTCCACTCCCAGGAAAAGCAACTTGCCTTGAGGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CAA 90 bp | TGGGACCTTGGATTTCTCTATGCACCGGGGTGGTGGACTGCTCCATaGTCCTACATCAGACTTGCTCACAGTACAATAAATGCTAGCATT | + |
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Preference number: 6 (lower is better) Translates to: WDLGFLYAPGWWTAP*SYIRLAHSTINASI Trigger: AATGCTAGCATTTATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAGAGAAATCCAAGGTCCCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CCA 72 bp | TGCTTTTCCTGGGAGTGGAGGTTGTTTTCGAAATCCTaGCCGACACTCATATTCCACAATAGTACCAACTGG | + |
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Preference number: 6 (lower is better) Translates to: CFSWEWRLFSKS*PTLIFHNSTNW Trigger: CCAGTTGGTACTATTGTGGAATATGAGTGTCGGCCAGGATTTCGAAAACAACCTCCACTCCCAGGAAAAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CAA 72 bp | GGATTTCTCTATGCACCGGGGTGGTGGACTGCTCCATaGTCCTACATCAGACTTGCTCACAGTACAATAAAT | + |
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Preference number: 6 (lower is better) Translates to: GFLYAPGWWTAP*SYIRLAHSTIN Trigger: ATTTATTGTACTGTGAGCAAGTCTGATGTAGGACAATGGAGCAGTCCACCACCCCGGTGCATAGAGAAATCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS TCA 72 bp | GAGGGATGCAAAACTCAGTCTTTCTGGAGCAACACATaGTTTCTCACAGAATGTTTCGTGGCTCGACCATTG | + |
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Preference number: 6 (lower is better) Translates to: EGCKTQSFWSNT*FLTECFVARPL Trigger: CAATGGTCGAGCCACGAAACATTCTGTGAGAAATCATGTGTTGCTCCAGAAAGACTGAGTTTTGCATCCCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS TCA 72 bp | GCTAGCATTTCCAACCAGGATGAAGCCTTTGTCACATaGATAGGTGACCACCTGGCTATACGTATAAGAGTC | + |
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Preference number: 6 (lower is better) Translates to: ASISNQDEAFVT*IGDHLAIRIRV Trigger: GACTCTTATACGTATAGCCAGGTGGTCACCTATTCATGTGACAAAGGCTTCATCCTGGTTGGAAATGCTAGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CAA 72 bp | GAGCAACTGGAGACCATACTAAATCCTCAAGGCAAGTaGCTTTTCCTGGGAGTGGAGGTTGTTTTCGAAATC | + |
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Preference number: 6 (lower is better) Translates to: EQLETILNPQGK*LFLGVEVVFEI Trigger: GATTTCGAAAACAACCTCCACTCCCAGGAAAAGCAACTTGCCTTGAGGATTTAGTATGGTCTCCAGTTGCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS TCA 72 bp | TACTGTTGTCTTGGTAACAGGTACATGCTGGGTTGCTaGAACTTTAACTGTGGAAGGTTTCTGAGGAGTTGG | + |
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Preference number: 6 (lower is better) Translates to: YCCLGNRYMLGC*NFNCGRFLRSW Trigger: CCAACTCCTCAGAAACCTTCCACAGTTAAAGTTTCAGCAACCCAGCATGTACCTGTTACCAAGACAACAGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000027650.13 ENSMUST00000140400.2 |
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| CDS GCA 72 bp | AAGCGGATTAAAGGGATTTACCCATCTTCCCTTAGGTaGCCAGAAACACTGCATTTTGATCGTTTTCCTGAG | + |
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Preference number: 6 (lower is better) Translates to: KRIKGIYPSSLR*PETLHFDRFPE Trigger: CTCAGGAAAACGATCAAAATGCAGTGTTTCTGGGCACCTAAGGGAAGATGGGTAAATCCCTTTAATCCGCTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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| CDS CCA 72 bp | TCTGGAGCAACACATGATTTCTCACAGAATGTTTCGTaGCTCGACCATTGGCCATTTTCAAGACAGACAACT | + |
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Preference number: 6 (lower is better) Translates to: SGATHDFSQNVS*LDHWPFSRQTT Trigger: AGTTGTCTGTCTTGAAAATGGCCAATGGTCGAGCCACGAAACATTCTGTGAGAAATCATGTGTTGCTCCAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS CCA 72 bp | CCCTCGCATTATTCCATTGTTGATTTTTGGTGGCTCTaGACAATGTATTTCTGTGCACACTGGAAACTCATC | + |
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Preference number: 6 (lower is better) Translates to: PSHYSIVDFWWL*TMYFCAHWKLI Trigger: GATGAGTTTCCAGTGTGCACAGAAATACATTGTCCAGAGCCACCAAAAATCAACAATGGAATAATGCGAGGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000027650.13 |
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| CDS TCA 72 bp | TTTCCCACAGTGATGGCAATTTCTTCTAACTCCCTGTaGGTCAAACTTACCATATATATAACGGTCACCACC | + |
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Preference number: 6 (lower is better) Translates to: FPTVMAISSNSL*VKLTIYITVTT Trigger: GGTGGTGACCGTTATATATATGGTAAGTTTGACTCACAGGGAGTTAGAAGAAATTGCCATCACTGTGGGAAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140400.2 |
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