RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD53 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040747

Ensembl transcript IDs: ENSMUST00000038845.10

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TATCAGTTGGTTAATGTTTGTCTTCTGCTTGATATGGGAAGTCCATaGCAAATATTCTCTTCAGTGGATGTGTATAAGACAGAGATCCAG +
Preference number: 1 (lower is better)
Translates to: YQLVNVCLLLDMGSP*QIFSSVDVYKTEIQ
Trigger: CTGGATCTCTGTCTTATACACATCCACTGAAGAGAATATTTGTCATGGACTTCCCATATCAAGCAGAAGACAAACATTAACCAACTGATA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR GCA 90 bp TTAAGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTTCTaGTTGATATGGGAAGTCCATGACAAATATTCTCTTCAGTGGATG +
Preference number: 1 (lower is better)
Translates to: LRDMVTAISWLMFVF*LIWEVHDKYSLQWM
Trigger: CATCCACTGAAGAGAATATTTGTCATGGACTTCCCATATCAAGCAGAAGACAAACATTAACCAACTGATAGCAGTAACCATATCCCTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR GCA 90 bp AAAAACACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTaGTATCAGTTGGTTAATGTTTGTCTTCTGCTTGATATGGGAAGT +
Preference number: 1 (lower is better)
Translates to: KNTQVCFTIFKGYGY*YQLVNVCLLLDMGS
Trigger: ACTTCCCATATCAAGCAGAAGACAAACATTAACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAACATACCTGGGTGTTTTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR CCA 90 bp ATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTTCTGCTTGATATaGGAAGTCCATGACAAATATTCTCTTCAGTGGATGTGTATAAGA +
Preference number: 1 (lower is better)
Translates to: MVTAISWLMFVFCLI*EVHDKYSLQWMCIR
Trigger: TCTTATACACATCCACTGAAGAGAATATTTGTCATGGACTTCCCATATCAAGCAGAAGACAAACATTAACCAACTGATAGCAGTAACCAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR-3UTR CCA 90 bp GATTTCTGTATGATTCCTATTACCAAGGACTGTGTTCAAAAGGAAACTGAGTATAACCACACCAGCAGCTaGCAGTGGATCTCAAGCCAC +
Preference number: 2 (lower is better)
Translates to: DFCMIPITKDCVQKETEYNHTSS*QWISSH
Trigger: GTGGCTTGAGATCCACTGCCAGCTGCTGGTGTGGTT...ATACTCAGTTTCCTTTTGAACACAGTCCTTGGTAATAGGAATCATACAGAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR CAA 90 bp AGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTTCTGCTaGATATGGGAAGTCCATGACAAATATTCTCTTCAGTGGATGTGT +
Preference number: 2 (lower is better)
Translates to: RDMVTAISWLMFVFC*IWEVHDKYSLQWMC
Trigger: ACACATCCACTGAAGAGAATATTTGTCATGGACTTCCCATATCAAGCAGAAGACAAACATTAACCAACTGATAGCAGTAACCATATCCCT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR-3UTR CCA 90 bp ACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTGTCTTCTGCTTGATATaGGAAGTCCATGACAAATAT +
Preference number: 2 (lower is better)
Translates to: TQVCFTIFKGYGYCYQLVVFCLI*EVHDKY
Trigger: ATATTTGTCATGGACTTCCCATATCAAGCAGAAGAC...AACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAACATACCTGGGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR-3UTR CCA 90 bp ACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAGATCCAGTCAAAGATaGAATAAGAAGAAGCCAAAA +
Preference number: 2 (lower is better)
Translates to: TQVCFTIFKGYGYCYQLVRSSQR*NKKKPK
Trigger: TTTTGGCTTCTTCTTATTCCATCTTTGACTGGATCT...AACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAACATACCTGGGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR CCA 72 bp AGTACTCTGAGAAATAACCACACCAGCAGCTGGCAGTaGATCTCAAGCCACCAGTGCTACAGTGTCTCTTTA +
Preference number: 3 (lower is better)
Translates to: STLRNNHTSSWQ*ISSHQCYSVSL
Trigger: TAAAGAGACACTGTAGCACTGGTGGCTTGAGATCCACTGCCAGCTGCTGGTGTGGTTATTTCTCAGAGTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR CCA 72 bp CAGTGGATGTGTATAAGACAGAGATCCAGTCAAAGATaGAATAAGAAGAAGCCAAAATGCCAGTCAGGCAGG +
Preference number: 3 (lower is better)
Translates to: QWMCIRQRSSQR*NKKKPKCQSGR
Trigger: CCTGCCTGACTGGCATTTTGGCTTCTTCTTATTCCATCTTTGACTGGATCTCTGTCTTATACACATCCACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR-3UTR CAA 90 bp ACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTATGTTTGTCTTCTGCTaGATATGGGAAGTCCATGAC +
Preference number: 3 (lower is better)
Translates to: TQVCFTIFKGYGYCYQLVMFVFC*IWEVHD
Trigger: GTCATGGACTTCCCATATCAAGCAGAAGACAAACAT...AACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAACATACCTGGGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR TCA 72 bp TGGGACTCAAAAATTTCCATCAGCTTCTCTCTTATGTaGCTTTGTAGAGTGGAAGTAGCAAGATTTAGAGGC +
Preference number: 3 (lower is better)
Translates to: WDSKISISFSLM*LCRVEVARFRG
Trigger: GCCTCTAAATCTTGCTACTTCCACTCTACAAAGTCACATAAGAGAGAAGCTGATGGAAATTTTTGAGTCCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR CCA 72 bp TTGATATGGGAAGTCCATGACAAATATTCTCTTCAGTaGATGTGTATAAGACAGAGATCCAGTCAAAGATGG +
Preference number: 3 (lower is better)
Translates to: LIWEVHDKYSLQ*MCIRQRSSQRW
Trigger: CCATCTTTGACTGGATCTCTGTCTTATACACATCCACTGAAGAGAATATTTGTCATGGACTTCCCATATCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR TCA 72 bp GTTAATGTTTGTCTTCTGCTTGATATGGGAAGTCCATaGCAAATATTCTCTTCAGTGGATGTGTATAAGACA +
Preference number: 3 (lower is better)
Translates to: VNVCLLLDMGSP*QIFSSVDVYKT
Trigger: TGTCTTATACACATCCACTGAAGAGAATATTTGTCATGGACTTCCCATATCAAGCAGAAGACAAACATTAAC
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR GCA 72 bp ATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTTCTaGTTGATATGGGAAGTCCATGACAAATATTCTCTT +
Preference number: 3 (lower is better)
Translates to: MVTAISWLMFVF*LIWEVHDKYSL
Trigger: AAGAGAATATTTGTCATGGACTTCCCATATCAAGCAGAAGACAAACATTAACCAACTGATAGCAGTAACCAT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR TCA 90 bp ACCAGACTGACTAACAATAGGATGGGAATAATCTTTTCTGGATGGATGGATGGACTGAACATCTGCACCTaGTGGGCAGGAAGATGGTGG +
Preference number: 4 (lower is better)
Translates to: TRLTNNRMGIIFSGWMDGLNICT*WAGRWW
Trigger: CCACCATCTTCCTGCCCATCAGGTGCAGATGTTCAG...TCCATCCATCCATCCAGAAAAGATTATTCCCATCCTATTGTTAGTCAGTCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CCA 90 bp CAGAGATCCAGTCAAAGATGGAATAAGAAGAAGCCAAAATGCCAGTCAGGCAGGAAGATGGTGGACCACTaGTCCAATCACTTGAGCCAT +
Preference number: 4 (lower is better)
Translates to: QRSSQRWNKKKPKCQSGRKMVDH*SNHLSH
Trigger: ATGGCTCAAGTGATTGGACCAGTGGTCCACCATCTT...CCTGCCTGACTGGCATTTTGGCTTCTTCTTATTCCATCTTTGACTGGATCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CCA 90 bp CAGAGATCCAGTCAAAGATGGAATAAGAAGAAGCCAAAATGCCAGTCAGGCAGGCACAGCCCTAAAGCCTaGCTTGTTTTGTCAATCTGG +
Preference number: 4 (lower is better)
Translates to: QRSSQRWNKKKPKCQSGRHSPKA*LVLSIW
Trigger: CCAGATTGACAAAACAAGCCAGGCTTTAGGGCTGTG...CCTGCCTGACTGGCATTTTGGCTTCTTCTTATTCCATCTTTGACTGGATCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR GCA 90 bp ACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTGCAGTTGAGTGTCAGTaGAAAGGACATTCCCAGCAC +
Preference number: 4 (lower is better)
Translates to: TQVCFTIFKGYGYCYQLVAVECQ*KGHSQH
Trigger: GTGCTGGGAATGTCCTTTGCACTGACACTCAACTGC...AACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAACATACCTGGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR TCA 90 bp ACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTGGCACTTATTTTCCTTaGTTGAGCCCATGCAACCCA +
Preference number: 4 (lower is better)
Translates to: TQVCFTIFKGYGYCYQLVGTYFP*LSPCNP
Trigger: TGGGTTGCATGGGCTCAATCAAGGAAAATAAGTGCC...AACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAACATACCTGGGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CCA 90 bp GTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTGGGCAGGAAGATGGTaGACCACTGGTCCAATCACT +
Preference number: 4 (lower is better)
Translates to: VSPSLRDMVTAISWLMFVWAGRW*TTGPIT
Trigger: AGTGATTGGACCAGTGGTCCACCATCTTCCTGCCCA...GACAAACATTAACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR GCA 90 bp AATGGGACTCAAAAATTTCCATCAGCTTCTCTCTTATGTGACTTTGTAGAGTGGGGACCAGGAAATAGATaGCAAAGCCCAAAATGCAAC +
Preference number: 4 (lower is better)
Translates to: NGTQKFPSASLLCDFVEWGPGNR*QSPKCN
Trigger: GTTGCATTTTGGGCTTTGGCATCTATTTCCTGGTCC...CCACTCTACAAAGTCACATAAGAGAGAAGCTGATGGAAATTTTTGAGTCCCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CCA 90 bp TTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTTCTTGTTTTGTCAATCTaGCAGTTGAGTGTCAGTGCA +
Preference number: 4 (lower is better)
Translates to: FTIFKGYGYCYQLVNVCLLVLSI*QLSVSA
Trigger: TGCACTGACACTCAACTGCCAGATTGACAAAACAAG...AAGACAAACATTAACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
3UTR CAA 72 bp GTTACTGCTATCAGTTGGTTAATGTTTGTCTTCTGCTaGATATGGGAAGTCCATGACAAATATTCTCTTCAG +
Preference number: 4 (lower is better)
Translates to: VTAISWLMFVFC*IWEVHDKYSLQ
Trigger: CTGAAGAGAATATTTGTCATGGACTTCCCATATCAAGCAGAAGACAAACATTAACCAACTGATAGCAGTAAC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR TCA 90 bp TTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTTCAGCCACTAAAGTGTTaGGTTTTTGTTCATACACAA +
Preference number: 4 (lower is better)
Translates to: FTIFKGYGYCYQLVNVCLQPLKC*VFVHTQ
Trigger: TTGTGTATGAACAAAAACTCAACACTTTAGTGGCTG...AAGACAAACATTAACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS GCA 90 bp GGTGGACCACTGGTCCAATCACTTGAGCCATTTACACCACAACACTaGAGTTGTGTCTGGATGAAGTCCCATGCCTTCATAGTGCTGTTG +
Preference number: 5 (lower is better)
Translates to: GGPLVQSLEPFTPQH*SCVWMKSHAFIVLL
Trigger: CAACAGCACTATGAAGGCATGGGACTTCATCCAGACACAACTGCAGTGTTGTGGTGTAAATGGCTCAAGTGATTGGACCAGTGGTCCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CAA 90 bp CAGAGATCCAGTCAAAGATGGAATAAGAAGAAGCCAAAATGCCAGTCAGGCAGGAGGCACTTATTTTCCTaGATTGAGCCCATGCAACCC +
Preference number: 5 (lower is better)
Translates to: QRSSQRWNKKKPKCQSGRRHLFS*IEPMQP
Trigger: GGGTTGCATGGGCTCAATCAAGGAAAATAAGTGCCT...CCTGCCTGACTGGCATTTTGGCTTCTTCTTATTCCATCTTTGACTGGATCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CAA 90 bp ATAAGAAGAAGCCAAAATGCCAGTCAGGCAGGTAATTGTTTAAGTTCTCATGGACACTGGTCCAATCACTaGAGCCATTTACACCACAAC +
Preference number: 5 (lower is better)
Translates to: IRRSQNASQAGNCLSSHGHWSNH*SHLHHN
Trigger: GTTGTGGTGTAAATGGCTCAAGTGATTGGACCAGTG...TCCATGAGAACTTAAACAATTACCTGCCTGACTGGCATTTTGGCTTCTTCTTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CAA 90 bp ACCCAGGTATGTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAAAGCCTGGCTTGTTTaGTCAATCTGGCAGTTGAGT +
Preference number: 5 (lower is better)
Translates to: TQVCFTIFKGYGYCYQLVKAWLV*SIWQLS
Trigger: ACTCAACTGCCAGATTGACAAAACAAGCCAGGCTTT...AACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAACATACCTGGGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CAA 90 bp GTTTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCACAATGACCAGAATGTaGCCAAGTGTCAGGAAGGGA +
Preference number: 5 (lower is better)
Translates to: VSPSLRDMVTAISWLMFVTMTRM*PSVRKG
Trigger: TCCCTTCCTGACACTTGGCAACATTCTGGTCATTGT...GACAAACATTAACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAAAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CAA 90 bp ACCAGACTGACTAACAATAGGATGGGAATAATCTTTTCTGGATGGATGGATGGAAGTGAAACCACGATTTaGCCTTATTATAGCAACCCT +
Preference number: 5 (lower is better)
Translates to: TRLTNNRMGIIFSGWMDGSETTI*PYYSNP
Trigger: AGGGTTGCTATAATAAGGCAAAATCGTGGTTTCACT...TCCATCCATCCATCCAGAAAAGATTATTCCCATCCTATTGTTAGTCAGTCTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS-3UTR CAA 90 bp TTCACCATCTTTAAGGGATATGGTTACTGCTATCAGTTGGTTAATGTTTGTCTTTACTCCATAGGTATTTaGGACCAGGAAATAGATGCC +
Preference number: 5 (lower is better)
Translates to: FTIFKGYGYCYQLVNVCLYSIGI*DQEIDA
Trigger: GGCATCTATTTCCTGGTCCAAAATACCTATGGAGTA...AAGACAAACATTAACCAACTGATAGCAGTAACCATATCCCTTAAAGATGGTGAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS CAA 72 bp ATGGGCAGGAAGATGGTGGACCACTGGTCCAATCACTaGAGCCATTTACACCACAACACTGCAGTTGTGTCT +
Preference number: 6 (lower is better)
Translates to: MGRKMVDHWSNH*SHLHHNTAVVS
Trigger: AGACACAACTGCAGTGTTGTGGTGTAAATGGCTCAAGTGATTGGACCAGTGGTCCACCATCTTCCTGCCCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS TCA 72 bp TTTTGCCTTATTATAGCAACCCTGAACATCTGCACCTaGTGGGCAGGAAGATGGTGGACCACTGGTCCAATC +
Preference number: 6 (lower is better)
Translates to: FCLIIATLNICT*WAGRWWTTGPI
Trigger: GATTGGACCAGTGGTCCACCATCTTCCTGCCCATCAGGTGCAGATGTTCAGGGTTGCTATAATAAGGCAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS GCA 72 bp CTGGTCCAATCACTTGAGCCATTTACACCACAACACTaGAGTTGTGTCTGGATGAAGTCCCATGCCTTCATA +
Preference number: 6 (lower is better)
Translates to: LVQSLEPFTPQH*SCVWMKSHAFI
Trigger: TATGAAGGCATGGGACTTCATCCAGACACAACTGCAGTGTTGTGGTGTAAATGGCTCAAGTGATTGGACCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS CCA 72 bp CTTGAGCCATTTACACCACAACACTGCAGTTGTGTCTaGATGAAGTCCCATGCCTTCATAGTGCTGTTGTCA +
Preference number: 6 (lower is better)
Translates to: LEPFTPQHCSCV*MKSHAFIVLLS
Trigger: TGACAACAGCACTATGAAGGCATGGGACTTCATCCAGACACAACTGCAGTGTTGTGGTGTAAATGGCTCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS CAA 90 bp AAGTGTCAGGAAGGGAAGGTTACGGAAGAGTACTCCATAGGTATTTaGGACCAGGAAATAGATGCCAAAGCCCAAAATGCAACAGCCACA +
Preference number: 6 (lower is better)
Translates to: KCQEGKVTEEYSIGI*DQEIDAKAQNATAT
Trigger: TGTGGCTGTTGCATTTTGGGCTTTGGCATCTATTTCCTGGTCCAAAATACCTATGGAGTACTCTTCCGTAACCTTCCCTTCCTGACACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS GCA 72 bp ACCACAACACTGCAGTTGTGTCTGGATGAAGTCCCATaGCTTCATAGTGCTGTTGTCAGAGTGATAATGTTG +
Preference number: 6 (lower is better)
Translates to: TTTLQLCLDEVP*LHSAVVRVIML
Trigger: CAACATTATCACTCTGACAACAGCACTATGAAGGCATGGGACTTCATCCAGACACAACTGCAGTGTTGTGGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS GCA 72 bp AGAGTACTCCATAGGTATTTTGGACCAGGAAATAGATaGCAAAGCCCAAAATGCAACAGCCACAGACCCAAA +
Preference number: 6 (lower is better)
Translates to: RVLHRYFGPGNR*QSPKCNSHRPK
Trigger: TTTGGGTCTGTGGCTGTTGCATTTTGGGCTTTGGCATCTATTTCCTGGTCCAAAATACCTATGGAGTACTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10
CDS CAA 72 bp TTCCAATATACAAGAAATTGGAGTGAAACCACGATTTaGCCTTATTATAGCAACCCTGAACATCTGCACCTG +
Preference number: 6 (lower is better)
Translates to: FQYTRNWSETTI*PYYSNPEHLHL
Trigger: CAGGTGCAGATGTTCAGGGTTGCTATAATAAGGCAAAATCGTGGTTTCACTCCAATTTCTTGTATATTGGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038845.10