RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD44 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000005087

Ensembl transcript IDs: ENSMUST00000005218.15, ENSMUST00000060516.14, ENSMUST00000099673.9, ENSMUST00000111190.9, ENSMUST00000111191.9, ENSMUST00000111192.3, ENSMUST00000111194.8, ENSMUST00000111198.9

Found 362 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CAAAGGGCATCAAGGGGTCATGGAGAGCTTGACAGAGCCCTTTTATaGCCAATCCCAGAGTGGCTTGCTGCATATAGGTTAAAGAGCCCC +
Preference number: 1 (lower is better)
Translates to: QRASRGHGELDRALL*PIPEWLAAYRLKSP
Trigger: GGGGCTCTTTAACCTATATGCAGCAAGCCACTCTGGGATTGGTCATAAAAGGGCTCTGTCAAGCTCTCCATGACCCCTTGATGCCCTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR CCA 90 bp AGTACACCTGATCTCCCACCCCGCTGGAAAGCAATGCCTAAGGATTaGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCA +
Preference number: 1 (lower is better)
Translates to: STPDLPPRWKAMPKD*TAGEAIWTHSNFLP
Trigger: TGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCTTAGGCATTGCTTTCCAGCGGGGTGGGAGATCAGGTGTACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 90 bp CGCTGGAAAGCAATGCCTAAGGATTGGACTGCTGGAGAGGCAATATaGACCCATTCAAATTTCCTCCCAGAGACCAATCTAGGTTCTGGG +
Preference number: 1 (lower is better)
Translates to: RWKAMPKDWTAGEAI*THSNFLPETNLGSG
Trigger: CCCAGAACCTAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCTTAGGCATTGCTTTCCAGCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 90 bp AATATGGACCCATTCAAATTTCCTCCCAGAGACCAATCTAGGTTCTaGGGAAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTGGGTA +
Preference number: 1 (lower is better)
Translates to: NMDPFKFPPRDQSRF*GKSLAGGCSLGLWV
Trigger: TACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTTCCCCAGAACCTAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 90 bp GATGGGGGTTGTACATCACACCTCCTCCTCGTGGCAAGCTACTGCTaGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGA +
Preference number: 1 (lower is better)
Translates to: DGGCTSHLLLVASYC*MFTLSFLLASPFMR
Trigger: TCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAGCTTGCCACGAGGAGGAGGTGTGATGTACAACCCCCATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR TCA 90 bp CACACTGATGTGCTACAAAGACTCAGACTTTGCTTGTTTAGAAACTaGAGGATCACAGCACAACGGGTCAAGATGGAAGATGGACCGGTA +
Preference number: 1 (lower is better)
Translates to: HTDVLQRLRLCLFRN*RITAQRVKMEDGPV
Trigger: TACCGGTCCATCTTCCATCTTGACCCGTTGTGCTGTGATCCTTCAGTTTCTAAACAAGCAAAGTCTGAGTCTTTGTAGCACATCAGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 90 bp CCTATGGTAGCATACCCTGGTAATGCAAGGCCCCTAGGAAGGAACTaGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCTCATTT +
Preference number: 1 (lower is better)
Translates to: PMVAYPGNARPLGRN*KSQILNGVLFGPSF
Trigger: AAATGAGGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGGCCTTGCATTACCAGGGTATGCTACCATAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR TCA 90 bp CTAGAACATACAAAATATGGACATGAAGGTATCTTTCACCTCATTTaGTTTTTACCCAAGGCAAAGAGAAGGAAAGCCTCCAGGATATAT +
Preference number: 1 (lower is better)
Translates to: LEHTKYGHEGIFHLI*FLPKAKRRKASRIY
Trigger: ATATATCCTGGAGGCTTTCCTTCTCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATTTTGTATGTTCTAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCAGCACATTGCATCTGTaGAGGGTCCCAGCTCCCAGG +
Preference number: 2 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSSTLHL*RVPAPR
Trigger: CCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCT...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACTCTCTCAGAAGCATCTaGAAATTTTCCAGCAGAAGG +
Preference number: 2 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDSLRSI*KFSSRR
Trigger: CCTTCTGCTGGAAAATTTTCAGATGCTTCTGAGAGA...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCCCCGCTGGAAAGCAATaGCTAAGGATTGGACTGCTG +
Preference number: 2 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFPAGKQ*LRIGLL
Trigger: CAGCAGTCCAATCCTTAGGCATTGCTTTCCAGCGGG...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCTTTGAGAGCCTGGAATaGAAACAGTGCTCCTGTCCC +
Preference number: 2 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFFESLE*KQCSCP
Trigger: GGGACAGGAGCACTGTTTTCATTCCAGGCTCTCAAA...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCAGCACATTGCATCTGTaGAGGGTCCCAGCTCCCAGG +
Preference number: 2 (lower is better)
Translates to: APQVPTTMFCEITNKIILSTLHL*RVPAPR
Trigger: CCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCT...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCGGGAAAATCCTTAGCTaGTGGATGTTCCCTGGGACT +
Preference number: 2 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFGKILS*WMFPGT
Trigger: AGTCCCAGGGAACATCCACCAGCTAAGGATTTTCCC...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCTCAATGAGATTGAGCTaGGTGAACCCAGCAGGCTCA +
Preference number: 2 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFSMRLS*VNPAGS
Trigger: TGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGA...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCGGAGAGAAACCCCTTTaGGAGCCTGGAATGAAAACA +
Preference number: 2 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFGEKPL*EPGMKT
Trigger: TGTTTTCATTCCAGGCTCTCAAAGGGGTTTCTCTCC...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp TTATTCAGACATCCAGACAATCACTTTCTGCCCCTCTCCACTTCCCAGACCCTTGTACCAACTCGCTTGTaGAAGCACCAACAAACACAG +
Preference number: 2 (lower is better)
Translates to: LFRHPDNHFLPLSTSQTLVPTRL*KHQQTQ
Trigger: CTGTGTTTGTTGGTGCTTTCACAAGCGAGTTGGTAC...AAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCCCCAGCAGGCTCAGATaGTCTAGCATGAGCTTAGGA +
Preference number: 2 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIPSRLR*SSMSLG
Trigger: TCCTAAGCTCATGCTAGAGCATCTGAGCCTGCTGGG...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCTGTTCCCTGGGACTTTaGGTAGGGATAAGGTTCAAT +
Preference number: 2 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETCSLGL*VGIRFN
Trigger: ATTGAACCTTATCCCTACCCAAAGTCCCAGGGAACA...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CAA 90 bp CTTGCCTACTCTCACTTCAGATTCTTGAACAGGAGAGAAACCCCTTaGAGAGCCTGGAATGAAAACAGTGCTCCTGTCCCTGATCTTCAA +
Preference number: 2 (lower is better)
Translates to: LAYSHFRFLNRRETP*RAWNENSAPVPDLQ
Trigger: TTGAAGATCAGGGACAGGAGCACTGTTTTCATTCCAGGCTCTCAAAGGGGTTTCTCTCCTGTTCAAGAATCTGAAGTGAGAGTAGGCAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCATACTAAGGCCACACTaGTGTGCTACAAAGACTCAG +
Preference number: 2 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFILRPH*CATKTQ
Trigger: CTGAGTCTTTGTAGCACATCAGTGTGGCCTTAGTAT...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TTATTCAGACATCCAGACAATCACTTTCTGCCCCTCTCCACTTCCCAGACCCTTTGTTCCCTGGGACTTTaGGTAGGGATAAGGTTCAAT +
Preference number: 2 (lower is better)
Translates to: LFRHPDNHFLPLSTSQTLCSLGL*VGIRFN
Trigger: ATTGAACCTTATCCCTACCCAAAGTCCCAGGGAACA...AAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCGCTGGAGAGGCAATATaGACCCATTCAAATTTCCTC +
Preference number: 2 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFAGEAI*THSNFL
Trigger: GAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGC...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCAGGACCTCCAGGGTTTaGTATTTCAAAAACAAAGAT +
Preference number: 2 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSRTSRV*YFKNKD
Trigger: ATCTTTGTTTTTGAAATATCAAACCCTGGAGGTCCT...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTCCCGCTGGAAAGCAATaGCTAAGGATTGGACTGCTG +
Preference number: 2 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCPAGKQ*LRIGLL
Trigger: CAGCAGTCCAATCCTTAGGCATTGCTTTCCAGCGGG...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp TTATTCAGACATCCAGACAATCACTTTCTGCCCCTCTCCACTTCCCAGACCCTTAAAGGGACTGAAGCTTaGCTACTCTCACTTCAGATT +
Preference number: 2 (lower is better)
Translates to: LFRHPDNHFLPLSTSQTLKGTEA*LLSLQI
Trigger: AATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTT...AAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACGGGAAAATCCTTAGCTaGTGGATGTTCCCTGGGACT +
Preference number: 2 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHGKILS*WMFPGT
Trigger: AGTCCCAGGGAACATCCACCAGCTAAGGATTTTCCC...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCTCAATGAGATTGAGCTaGGTGAACCCAGCAGGCTCA +
Preference number: 2 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRSMRLS*VNPAGS
Trigger: TGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGA...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCACCCCTTTGAGAGCCTaGAATGAAAACAGTGCTCCT +
Preference number: 2 (lower is better)
Translates to: EKAPQVPTTMFCEITNKITPLRA*NENSAP
Trigger: AGGAGCACTGTTTTCATTCCAGGCTCTCAAAGGGGT...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGCACACCTCCTCCTCGTaGCAAGCTACTGCTGGATGT +
Preference number: 2 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMHTSSS*QATAGC
Trigger: ACATCCAGCAGTAGCTTGCCACGAGGAGGAGGTGTG...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCTGCTTGTTTAGAAACTaGAGGATCACAGCACAACGG +
Preference number: 2 (lower is better)
Translates to: EKAPQVPTTMFCEITNKICLFRN*RITAQR
Trigger: CCGTTGTGCTGTGATCCTTCAGTTTCTAAACAAGCA...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCGGAGAGAAACCCCTTTaGGAGCCTGGAATGAAAACA +
Preference number: 2 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRGEKPL*EPGMKT
Trigger: TGTTTTCATTCCAGGCTCTCAAAGGGGTTTCTCTCC...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGCCCGCTGGAAAGCAATaGCTAAGGATTGGACTGCTG +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKPAGKQ*LRIGLL
Trigger: CAGCAGTCCAATCCTTAGGCATTGCTTTCCAGCGGG...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGCCCAGCAGGCTCAGATaGTCTAGCATGAGCTTAGGA +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKPSRLR*SSMSLG
Trigger: TCCTAAGCTCATGCTAGAGCATCTGAGCCTGCTGGG...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp AAGAGAAGGAAAGCCTCCAGGATATATGAGAAATTTATAGTTGATGGCAAAAGAAGCACATTGCATCTGTaGAGGGTCCCAGCTCCCAGG +
Preference number: 2 (lower is better)
Translates to: KRRKASRIYEKFIVDGKRSTLHL*RVPAPR
Trigger: CCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCT...TCTTTTGCCATCAACTATAAATTTCTCATATATCCTGGAGGCTTTCCTTCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCTGTTCCCTGGGACTTTaGGTAGGGATAAGGTTCAAT +
Preference number: 2 (lower is better)
Translates to: EKAPQVPTTMFCEITNKICSLGL*VGIRFN
Trigger: ATTGAACCTTATCCCTACCCAAAGTCCCAGGGAACA...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACGCAATGCCTAAGGATTaGACTGCTGGAGAGGCAATA +
Preference number: 2 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHAMPKD*TAGEAI
Trigger: TATTGCCTCTCCAGCAGTCCAATCCTTAGGCATTGC...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTTTTGAGAGCCTGGAATaGAAACAGTGCTCCTGTCCC +
Preference number: 2 (lower is better)
Translates to: TKSWSNSKSDCATRIITTFESLE*KQCSCP
Trigger: GGGACAGGAGCACTGTTTTCATTCCAGGCTCTCAAA...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGTTTGAGAGCCTGGAATaGAAACAGTGCTCCTGTCCC +
Preference number: 2 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRFESLE*KQCSCP
Trigger: GGGACAGGAGCACTGTTTTCATTCCAGGCTCTCAAA...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGTTTGAGAGCCTGGAATaGAAACAGTGCTCCTGTCCC +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKFESLE*KQCSCP
Trigger: GGGACAGGAGCACTGTTTTCATTCCAGGCTCTCAAA...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTAGGGAGGCTAGAATATaGGTAAGGAGAGCTGAGGCT +
Preference number: 2 (lower is better)
Translates to: TKSWSNSKSDCATRIITTREARI*VRRAEA
Trigger: AGCCTCAGCTCTCCTTACTCATATTCTAGCCTCCCT...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCAAGGCCACACTGATGTaGTACAAAGACTCAGACTTT +
Preference number: 2 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIKATLM*YKDSDF
Trigger: AAAGTCTGAGTCTTTGTAGCACATCAGTGTGGCCTT...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGGGGAAAATCCTTAGCTaGTGGATGTTCCCTGGGACT +
Preference number: 2 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRGKILS*WMFPGT
Trigger: AGTCCCAGGGAACATCCACCAGCTAAGGATTTTCCC...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACGCTGGAGAGGCAATATaGACCCATTCAAATTTCCTC +
Preference number: 2 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHAGEAI*THSNFL
Trigger: GAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGC...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCAAGGCCACACTGATGTaGTACAAAGACTCAGACTTT +
Preference number: 2 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRKATLM*YKDSDF
Trigger: AAAGTCTGAGTCTTTGTAGCACATCAGTGTGGCCTT...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACAAAGGGACTGAAGCTTaGCTACTCTCACTTCAGATT +
Preference number: 2 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHKGTEA*LLSLQI
Trigger: AATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTT...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTGCTGGAGAGGCAATATaGACCCATTCAAATTTCCTC +
Preference number: 2 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCAGEAI*THSNFL
Trigger: GAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGC...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCAATGCCTAAGGATTaGACTGCTGGAGAGGCAATA +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKAMPKD*TAGEAI
Trigger: TATTGCCTCTCCAGCAGTCCAATCCTTAGGCATTGC...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGACCCCTTTGAGAGCCTaGAATGAAAACAGTGCTCCT +
Preference number: 2 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRTPLRA*NENSAP
Trigger: AGGAGCACTGTTTTCATTCCAGGCTCTCAAAGGGGT...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGTGCTTGTTTAGAAACTaGAGGATCACAGCACAACGG +
Preference number: 2 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRCLFRN*RITAQR
Trigger: CCGTTGTGCTGTGATCCTTCAGTTTCTAAACAAGCA...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGATACTAAGGCCACACTaGTGTGCTACAAAGACTCAG +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKILRPH*CATKTQ
Trigger: CTGAGTCTTTGTAGCACATCAGTGTGGCCTTAGTAT...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTCTCGTGGCAAGCTACTaGTGGATGTTTACACTTTCA +
Preference number: 2 (lower is better)
Translates to: TKSWSNSKSDCATRIITTLVASY*WMFTLS
Trigger: TGAAAGTGTAAACATCCAGCAGTAGCTTGCCACGAG...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGTGTTCCCTGGGACTTTaGGTAGGGATAAGGTTCAAT +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKCSLGL*VGIRFN
Trigger: ATTGAACCTTATCCCTACCCAAAGTCCCAGGGAACA...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGAAAATCCTTAGCTGGTaGATGTTCCCTGGGACTTTG +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKKILSW*MFPGTL
Trigger: CAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCTGGAGAGGCAATATaGACCCATTCAAATTTCCTC +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKAGEAI*THSNFL
Trigger: GAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGC...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGAATAGCATCACCCTTTaGGGATCTCTCAGAAGCATC +
Preference number: 2 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRNSITL*GSLRSI
Trigger: GATGCTTCTGAGAGATCCCCAAAGGGTGATGCTATT...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGTCTCTCAGAAGCATCTaGAAATTTTCCAGCAGAAGG +
Preference number: 2 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRSLRSI*KFSSRR
Trigger: CCTTCTGCTGGAAAATTTTCAGATGCTTCTGAGAGA...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR GCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGAAAGGGACTGAAGCTTaGCTACTCTCACTTCAGATT +
Preference number: 2 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRKGTEA*LLSLQI
Trigger: AATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTT...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCCCCTAGGAAGGAACTaGAAAAGTCAAATTCTTAAT +
Preference number: 2 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRPLGRN*KSQILN
Trigger: ATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp CAGAAAGTCCGTGTATCTCCTTTAAGGAACATCTTCACATCCACTTTTGATATAAGCAATGGGACATCCTaGCAGATGAATGAACACTTG +
Preference number: 2 (lower is better)
Translates to: QKVRVSPLRNIFTSTFDISNGTS*QMNEHL
Trigger: CAAGTGTTCATTCATCTGCCAGGATGTCCCATTGCT...TATATCAAAAGTGGATGTGAAGATGTTCCTTAAAGGAGATACACGGACTTTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp CAGAAAGTCCGTGTATCTCCTTTAAGGAACATCTTCACATCCACTTTTGATATATCTCTCAGAAGCATCTaGAAATTTTCCAGCAGAAGG +
Preference number: 2 (lower is better)
Translates to: QKVRVSPLRNIFTSTFDISLRSI*KFSSRR
Trigger: CCTTCTGCTGGAAAATTTTCAGATGCTTCTGAGAGA...TATATCAAAAGTGGATGTGAAGATGTTCCTTAAAGGAGATACACGGACTTTCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGATGCTTGTTTAGAAACTaGAGGATCACAGCACAACGG +
Preference number: 2 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRCLFRN*RITAQR
Trigger: CCGTTGTGCTGTGATCCTTCAGTTTCTAAACAAGCA...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGAAAAATCCTTAGCTGGTaGATGTTCCCTGGGACTTTG +
Preference number: 2 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRKILSW*MFPGTL
Trigger: CAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR TCA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGAGGACCTCCAGGGTTTaGTATTTCAAAAACAAAGAT +
Preference number: 2 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMRTSRV*YFKNKD
Trigger: ATCTTTGTTTTTGAAATATCAAACCCTGGAGGTCCT...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGCCCCTAGGAAGGAACTaGAAAAGTCAAATTCTTAAT +
Preference number: 2 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKPLGRN*KSQILN
Trigger: ATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CAA 90 bp ATTCTAATACCAGTGGAGAATAGCCAAGAATCATCTAGTGTCTATTaGAACAAGAAAACCAGGTGTCTAAATATGGAACTGGCTTATAGT +
Preference number: 2 (lower is better)
Translates to: ILIPVENSQESSSVY*NKKTRCLNMELAYS
Trigger: ACTATAAGCCAGTTCCATATTTAGACACCTGGTTTTCTTGTTCAAATAGACACTAGATGATTCTTGGCTATTCTCCACTGGTATTAGAAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACAGAGTGAGATGGGGGTaGTACATCACACCTCCTCCT +
Preference number: 3 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDRVRWG*YITPPP
Trigger: AGGAGGAGGTGTGATGTACAACCCCCATCTCACTCT...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR TCA 72 bp GTGCCCTCAAAGGGCATCAAGGGGTCATGGAGAGCTTaGCAGAGCCCTTTTATGACCAATCCCAGAGTGGCT +
Preference number: 3 (lower is better)
Translates to: VPSKGIKGSWRA*QSPFMTNPRVA
Trigger: AGCCACTCTGGGATTGGTCATAAAAGGGCTCTGTCAAGCTCTCCATGACCCCTTGATGCCCTTTGAGGGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR GCA 72 bp CCAGTACACCTGATCTCCCACCCCGCTGGAAAGCAATaGCTAAGGATTGGACTGCTGGAGAGGCAATATGGA +
Preference number: 3 (lower is better)
Translates to: PVHLISHPAGKQ*LRIGLLERQYG
Trigger: TCCATATTGCCTCTCCAGCAGTCCAATCCTTAGGCATTGCTTTCCAGCGGGGTGGGAGATCAGGTGTACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp GAGTATGTAACCAGTACACCTGATCTCCCACCCCGCTaGAAAGCAATGCCTAAGGATTGGACTGCTGGAGAG +
Preference number: 3 (lower is better)
Translates to: EYVTSTPDLPPR*KAMPKDWTAGE
Trigger: CTCTCCAGCAGTCCAATCCTTAGGCATTGCTTTCCAGCGGGGTGGGAGATCAGGTGTACTGGTTACATACTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp AAAGCACCAACAAACACAGCCATGGCTAGAGTGAGATaGGGGTTGTACATCACACCTCCTCCTCGTGGCAAG +
Preference number: 3 (lower is better)
Translates to: KAPTNTAMARVR*GLYITPPPRGK
Trigger: CTTGCCACGAGGAGGAGGTGTGATGTACAACCCCCATCTCACTCTAGCCATGGCTGTGTTTGTTGGTGCTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR TCA 72 bp CACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATaGCGTCTCCAATCGTGCTGTCTTTTCAAGTTAATG +
Preference number: 3 (lower is better)
Translates to: HIASVEGPSSQE*RLQSCCLFKLM
Trigger: CATTAACTTGAAAAGACAGCACGATTGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp AACCATAAACCTGCTTATCTGATGATAAGATCCCAGTaGTGGGCAGTCCTGTGGCTTTTTGAGGGGTTCCCC +
Preference number: 3 (lower is better)
Translates to: NHKPAYLMIRSQ*WAVLWLFEGFP
Trigger: GGGGAACCCCTCAAAAAGCCACAGGACTGCCCACCACTGGGATCTTATCATCAGATAAGCAGGTTTATGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR TCA 72 bp TCAAGGGGTCATGGAGAGCTTGACAGAGCCCTTTTATaGCCAATCCCAGAGTGGCTTGCTGCATATAGGTTA +
Preference number: 3 (lower is better)
Translates to: SRGHGELDRALL*PIPEWLAAYRL
Trigger: TAACCTATATGCAGCAAGCCACTCTGGGATTGGTCATAAAAGGGCTCTGTCAAGCTCTCCATGACCCCTTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR GCA 72 bp CTTCCATATTATTCAGACATCCAGACAATCACTTTCTaGCCCTCTCCACTTCCCAGACCCTTCACACCAGAG +
Preference number: 3 (lower is better)
Translates to: LPYYSDIQTITF*PSPLPRPFTPE
Trigger: CTCTGGTGTGAAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAATATGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR CCA 72 bp TCCCCAATAATAATAGTCAGTAGCACATTGCATCTGTaGAGGGTCCCAGCTCCCAGGAATGACGTCTCCAAT +
Preference number: 3 (lower is better)
Translates to: SPIIIVSSTLHL*RVPAPRNDVSN
Trigger: ATTGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGACTATTATTATTGGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp CCATTCAAATTTCCTCCCAGAGACCAATCTAGGTTCTaGGGAAAATCCTTAGCTGGTGGATGTTCCCTGGGA +
Preference number: 3 (lower is better)
Translates to: PFKFPPRDQSRF*GKSLAGGCSLG
Trigger: TCCCAGGGAACATCCACCAGCTAAGGATTTTCCCCAGAACCTAGATTGGTCTCTGGGAGGAAATTTGAATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp AGTGAGATGGGGGTTGTACATCACACCTCCTCCTCGTaGCAAGCTACTGCTGGATGTTTACACTTTCATTTC +
Preference number: 3 (lower is better)
Translates to: SEMGVVHHTSSS*QATAGCLHFHF
Trigger: GAAATGAAAGTGTAAACATCCAGCAGTAGCTTGCCACGAGGAGGAGGTGTGATGTACAACCCCCATCTCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGAACCAAGAATGTGCATTaGGTAGAAGCCTATGGTAGC +
Preference number: 3 (lower is better)
Translates to: RIGLLERQYGPIQISSQRTKNVH*VEAYGS
Trigger: GCTACCATAGGCTTCTACCAAATGCACATTCTTGGT...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR GCA 72 bp AAGGGTGGTCACCAAAGCACAAAAGGGACTGAAGCTTaGCTACTCTCACTTCAGATTCTTGAACAGGAGAGA +
Preference number: 3 (lower is better)
Translates to: KGGHQSTKGTEA*LLSLQILEQER
Trigger: TCTCTCCTGTTCAAGAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCACCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp GGAAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTaGGTAGGGATAAGGTTCAATAGGGACCAAGAATGT +
Preference number: 3 (lower is better)
Translates to: GKSLAGGCSLGL*VGIRFNRDQEC
Trigger: ACATTCTTGGTCCCTATTGAACCTTATCCCTACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp GCAATGCCTAAGGATTGGACTGCTGGAGAGGCAATATaGACCCATTCAAATTTCCTCCCAGAGACCAATCTA +
Preference number: 3 (lower is better)
Translates to: AMPKDWTAGEAI*THSNFLPETNL
Trigger: TAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCTTAGGCATTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp TGTACATCACACCTCCTCCTCGTGGCAAGCTACTGCTaGATGTTTACACTTTCATTTCTGTTGGCTTCTCCT +
Preference number: 3 (lower is better)
Translates to: CTSHLLLVASYC*MFTLSFLLASP
Trigger: AGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAGCTTGCCACGAGGAGGAGGTGTGATGTACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCATAGTCAGTAGCACATaGCATCTGTGGAGGGTCCCA +
Preference number: 3 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPIVSST*HLWRVP
Trigger: TGGGACCCTCCACAGATGCAATGTGCTACTGACTAT...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACATAGTCAGTAGCACATaGCATCTGTGGAGGGTCCCA +
Preference number: 3 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHIVSST*HLWRVP
Trigger: TGGGACCCTCCACAGATGCAATGTGCTACTGACTAT...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCTTAATGGAGTATTATTaGGGCCCTCATTTCAGAAAG +
Preference number: 3 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSLMEYY*GPHFRK
Trigger: CTTTCTGAAATGAGGGCCCAAATAATACTCCATTAA...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCAGGAGAGAAACCCCTTaGAGAGCCTGGAATGAAAAC +
Preference number: 3 (lower is better)
Translates to: APQVPTTMFCEITNKIILRRETP*RAWNEN
Trigger: GTTTTCATTCCAGGCTCTCAAAGGGGTTTCTCTCCT...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR TCA 72 bp ATGGGTAGAGAATTATCTTTAGCTCTGAGTCTTGTATaGCTCTTCTTGTGCCCTCAAAGGGCATCAAGGGGT +
Preference number: 3 (lower is better)
Translates to: MGRELSLALSLV*LFLCPQRASRG
Trigger: ACCCCTTGATGCCCTTTGAGGGCACAAGAAGAGTCATACAAGACTCAGAGCTAAAGATAATTCTCTACCCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGATAGTCAGTAGCACATaGCATCTGTGGAGGGTCCCA +
Preference number: 3 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKIVSST*HLWRVP
Trigger: TGGGACCCTCCACAGATGCAATGTGCTACTGACTAT...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCACCAAGAATGTGCATTaGGTAGAAGCCTATGGTAGC +
Preference number: 3 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRTKNVH*VEAYGS
Trigger: GCTACCATAGGCTTCTACCAAATGCACATTCTTGGT...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR TCA 72 bp GTGCTACAAAGACTCAGACTTTGCTTGTTTAGAAACTaGAGGATCACAGCACAACGGGTCAAGATGGAAGAT +
Preference number: 3 (lower is better)
Translates to: VLQRLRLCLFRN*RITAQRVKMED
Trigger: ATCTTCCATCTTGACCCGTTGTGCTGTGATCCTTCAGTTTCTAAACAAGCAAAGTCTGAGTCTTTGTAGCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp GCATACCCTGGTAATGCAAGGCCCCTAGGAAGGAACTaGAAAAGTCAAATTCTTAATGGAGTATTATTTGGG +
Preference number: 3 (lower is better)
Translates to: AYPGNARPLGRN*KSQILNGVLFG
Trigger: CCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGGCCTTGCATTACCAGGGTATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CCA 72 bp CTGAAGGATCACAGCACAACGGGTCAAGATGGAAGATaGACCGGTACTTATTATGAATCAATTTATACCCTG +
Preference number: 3 (lower is better)
Translates to: LKDHSTTGQDGR*TGTYYESIYTL
Trigger: CAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCGTTGTGCTGTGATCCTTCAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTAGGAGAGAAACCCCTTaGAGAGCCTGGAATGAAAAC +
Preference number: 3 (lower is better)
Translates to: TKSWSNSKSDCATRIITTRRETP*RAWNEN
Trigger: GTTTTCATTCCAGGCTCTCAAAGGGGTTTCTCTCCT...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGACCAAGAATGTGCATTaGGTAGAAGCCTATGGTAGC +
Preference number: 3 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMTKNVH*VEAYGS
Trigger: GCTACCATAGGCTTCTACCAAATGCACATTCTTGGT...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCAAGGACCTCCAGGGTTaGATATTTCAAAAACAAAGA +
Preference number: 3 (lower is better)
Translates to: APQVPTTMFCEITNKIILKDLQG*IFQKQR
Trigger: TCTTTGTTTTTGAAATATCAAACCCTGGAGGTCCTT...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTAAGGACCTCCAGGGTTaGATATTTCAAAAACAAAGA +
Preference number: 3 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCKDLQG*IFQKQR
Trigger: TCTTTGTTTTTGAAATATCAAACCCTGGAGGTCCTT...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGTTAATGGAGTATTATTaGGGCCCTCATTTCAGAAAG +
Preference number: 3 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMLMEYY*GPHFRK
Trigger: CTTTCTGAAATGAGGGCCCAAATAATACTCCATTAA...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGAAGGACCTCCAGGGTTaGATATTTCAAAAACAAAGA +
Preference number: 3 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRKDLQG*IFQKQR
Trigger: TCTTTGTTTTTGAAATATCAAACCCTGGAGGTCCTT...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGAAGGACCTCCAGGGTTaGATATTTCAAAAACAAAGA +
Preference number: 3 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKKDLQG*IFQKQR
Trigger: TCTTTGTTTTTGAAATATCAAACCCTGGAGGTCCTT...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTACACTTTCATTTCTGTaGGCTTCTCCTTTTATGAGA +
Preference number: 3 (lower is better)
Translates to: TKSWSNSKSDCATRIITTTLSFL*ASPFMR
Trigger: TCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGT...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTTCATCTAGTGTCTATTaGAACAAGAAAACCAGGTGT +
Preference number: 3 (lower is better)
Translates to: TKSWSNSKSDCATRIITTSSSVY*NKKTRC
Trigger: ACACCTGGTTTTCTTGTTCAAATAGACACTAGATGA...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR TCA 72 bp AACGGGTCAAGATGGAAGATGGACCGGTACTTATTATaGATCAATTTATACCCTGTTATGCTTCTGATAAAG +
Preference number: 3 (lower is better)
Translates to: NGSRWKMDRYLL*INLYPVMLLIK
Trigger: CTTTATCAGAAGCATAACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCGTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR-3UTR CAA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGATCATCTAGTGTCTATTaGAACAAGAAAACCAGGTGT +
Preference number: 3 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRSSSVY*NKKTRC
Trigger: ACACCTGGTTTTCTTGTTCAAATAGACACTAGATGA...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACTGCTGGCCTCCCCGTTaGGCTCACTGGGTTTCCTGT +
Preference number: 4 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDCWPPR*AHWVSC
Trigger: ACAGGAAACCCAGTGAGCTCAACGGGGAGGCCAGCA...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACGCTAATTCGGATCCATaGGTCACAGTGCGGGAACTC +
Preference number: 4 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDANSDP*VTVREL
Trigger: GAGTTCCCGCACTGTGACTCATGGATCCGAATTAGC...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCACCTGGAGTCCTTGGATaGGTCTCGATCTCTGGTGGC +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPPGVLG*VSISGG
Trigger: GCCACCAGAGATCGAGACTCATCCAAGGACTCCAGG...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000099673.9
CDS-3UTR TCA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACAGCCATTCTGGAATCTaGGGTCTCCTCATAGGACCA +
Preference number: 4 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDSHSGI*GLLIGP
Trigger: TGGTCCTATGAGGAGACCTCAGATTCCAGAATGGCT...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCATGTGCCAGGCTCAACTaGAAGAGGCAAAGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPCARLN*KRQSPQ
Trigger: TTGGGGACTTTGCCTCTTGCAGTTGAGCCTGGCACA...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACCACATGGAATACACCTaGGTAGCGGCAGGTTACATT +
Preference number: 4 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDHMEYT*VAAGYI
Trigger: AATGTAACCTGCCGCTACGCAGGTGTATTCCATGTG...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACACTTCTGGGTTTGAATaGTTTGGCTTCCACTGGGTC +
Preference number: 4 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDTSGFE*FGFHWV
Trigger: GACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGT...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCTGCGGGAACTCCCCCTaGAGTCCTTGGATGAGTCTC +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSCGNSP*SPWMSL
Trigger: GAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCA...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CAA 72 bp TGTGCCCTCAAAGGGCATCAAGGGGTCATGGAGAGCTaGACAGAGCCCTTTTATGACCAATCCCAGAGTGGC +
Preference number: 4 (lower is better)
Translates to: CALKGHQGVMES*TEPFYDQSQSG
Trigger: GCCACTCTGGGATTGGTCATAAAAGGGCTCTGTCAAGCTCTCCATGACCCCTTGATGCCCTTTGAGGGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACCTGAGTTGTGGACTGTaGATTACCAAACCAAGACCA +
Preference number: 4 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDLSCGL*ITKPRP
Trigger: TGGTCTTGGTTTGGTAATTCACAGTCCACAACTCAG...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR TCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCCTGGTCCGGGGTCTCTaGTGGTTCCTTGTTCACCAA +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSLVRGL*WFLVHQ
Trigger: TTGGTGAACAAGGAACCATCAGAGACCCCGGACCAG...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCACAGTGCCAGGAGAGATaGCAAGATGATGAGCCATTC +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPQCQER*QDDEPF
Trigger: GAATGGCTCATCATCTTGGCATCTCTCCTGGCACTG...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCAGTCCAATTTTCTCCATaGGCACTGGTGCTGATTCTG +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPVQFSP*ALVLIL
Trigger: CAGAATCAGCACCAGTGCTCATGGAGAAAATTGGAC...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCATCCCATTGCCACCGTTaGTCACCAGCTTTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPSHCHR*SPAFSS
Trigger: AGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGA...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCTGTGCCAGGCTCAACTaGAAGAGGCAAAGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSCARLN*KRQSPQ
Trigger: TTGGGGACTTTGCCTCTTGCAGTTGAGCCTGGCACA...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACTGGTCCGGGGTCTCTaGTGGTTCCTTGTTCACCAA +
Preference number: 4 (lower is better)
Translates to: RIGLLERQYGPIQISSQRLVRGL*WFLVHQ
Trigger: TTGGTGAACAAGGAACCATCAGAGACCCCGGACCAG...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp ACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCAATCTATGCGGGAACTCCCCCTaGAGTCCTTGGATGAGTCTC +
Preference number: 4 (lower is better)
Translates to: TAGEAIWTHSNFLPETNLCGNSP*SPWMSL
Trigger: GAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCA...TAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCACCACATTTCCTTCTATaGACCCATACCTGCATGTTT +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPPHFLL*THTCMF
Trigger: AAACATGCAGGTATGGGTTCATAGAAGGAAATGTGG...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCTGCTGGCCTCCCCGTTaGGCTCACTGGGTTTCCTGT +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILCWPPR*AHWVSC
Trigger: ACAGGAAACCCAGTGAGCTCAACGGGGAGGCCAGCA...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCATGTTATTCTTTGACTTaGATGGTTGTTGTGGGCCGA +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPCYSLT*MVVVGR
Trigger: TCGGCCCACAACAACCATCCAAGTCAAAGAATAACA...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCCACCAAATGGGTATTTaGAGCTGCAGTAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSHQMGI*SCSRLK
Trigger: CTTCAGCCTACTGCAGCTCCAAATACCCATTTGGTG...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCTGCGGGAACTCCCCCTaGAGTCCTTGGATGAGTCTC +
Preference number: 4 (lower is better)
Translates to: EKAPQVPTTMFCEITNKICGNSP*SPWMSL
Trigger: GAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCA...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCGAGGGGCTGAGGCATTaGAGCAATATGTGTCATAGT +
Preference number: 4 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETEGLRH*SNMCHS
Trigger: ACTATGACACATATTGCTTCAATGCCTCAGCCCCTC...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCATGTGTTGTTATTCTTTaGCTTGGATGGTTGTTGTGG +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPCVVIL*LGWLLW
Trigger: CCACAACAACCATCCAAGTCAAAGAATAACAACACA...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR TCA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCACAGGAAACATCCTCTTaGCTCTGTGTTGTTATTCTT +
Preference number: 4 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPQETSS*LCVVIL
Trigger: AAGAATAACAACACAGAGTCAAGAGGATGTTTCCTG...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR TCA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACTGTGGAGTTGTCACTaGAAGTGGTCCTGTCCTGTT +
Preference number: 4 (lower is better)
Translates to: RIGLLERQYGPIQISSQRLWSCH*KWSCPV
Trigger: AACAGGACAGGACCACTTTCAGTGACAACTCCACAG...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCAGCCATTCTGGAATCTaGGGTCTCCTCATAGGACCA +
Preference number: 4 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFSHSGI*GLLIGP
Trigger: TGGTCCTATGAGGAGACCTCAGATTCCAGAATGGCT...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTTGCTGGCCTCCCCGTTaGGCTCACTGGGTTTCCTGT +
Preference number: 4 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCCWPPR*AHWVSC
Trigger: ACAGGAAACCCAGTGAGCTCAACGGGGAGGCCAGCA...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCAAATGCACCATTTCCTaGGACTTGCTGGCCTCCCCG +
Preference number: 4 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIKCTIS*DLLASP
Trigger: CGGGGAGGCCAGCAAGTCTCAGGAAATGGTGCATTT...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACAGTGCCAGGAGAGATaGCAAGATGATGAGCCATTC +
Preference number: 4 (lower is better)
Translates to: RIGLLERQYGPIQISSQRQCQER*QDDEPF
Trigger: GAATGGCTCATCATCTTGGCATCTCTCCTGGCACTG...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp TTATTCAGACATCCAGACAATCACTTTCTGCCCCTCTCCACTTCCCAGACCCTTCAGTGCCAGGAGAGATaGCAAGATGATGAGCCATTC +
Preference number: 4 (lower is better)
Translates to: LFRHPDNHFLPLSTSQTLQCQER*QDDEPF
Trigger: GAATGGCTCATCATCTTGGCATCTCTCCTGGCACTG...AAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCCACCAAATGGGTATTTaGAGCTGCAGTAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETHQMGI*SCSRLK
Trigger: CTTCAGCCTACTGCAGCTCCAAATACCCATTTGGTG...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCGATGATGAGCCATTCTaGAATCTGAGGTCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSDDEPF*NLRSPH
Trigger: ATGAGGAGACCTCAGATTCCAGAATGGCTCATCATC...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCCCACATTTCCTTCTATaGACCCATACCTGCATGTTT +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSPHFLL*THTCMF
Trigger: AAACATGCAGGTATGGGTTCATAGAAGGAAATGTGG...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp AAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTGGGTAGGGATAAGGTTCAACTGTGGAGTTGTCACTaGAAGTGGTCCTGTCCTGTT +
Preference number: 4 (lower is better)
Translates to: KILSWWMFPGTLGRDKVQLWSCH*KWSCPV
Trigger: AACAGGACAGGACCACTTTCAGTGACAACTCCACAG...TTGAACCTTATCCCTACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCTCCCATTGCCACCGTTaGTCACCAGCTTTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFSHCHR*SPAFSS
Trigger: AGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGA...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGTGCTGGCCTCCCCGTTaGGCTCACTGGGTTTCCTGT +
Preference number: 4 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKCWPPR*AHWVSC
Trigger: ACAGGAAACCCAGTGAGCTCAACGGGGAGGCCAGCA...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACAAATGCACCATTTCCTaGGACTTGCTGGCCTCCCCG +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHKCTIS*DLLASP
Trigger: CGGGGAGGCCAGCAAGTCTCAGGAAATGGTGCATTT...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCCTGGTCCGGGGTCTCTaGTGGTTCCTTGTTCACCAA +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILLVRGL*WFLVHQ
Trigger: TTGGTGAACAAGGAACCATCAGAGACCCCGGACCAG...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCCATGAAAACCAGTTCTaGGCTTCTTGCCTCTTGGGT +
Preference number: 4 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFHENQF*ASCLLG
Trigger: ACCCAAGAGGCAAGAAGCCCAGAACTGGTTTTCATG...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCAACCACGTCTCCTGCTaGGTAGCTGCTGCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILNHVSC*VAAASA
Trigger: AGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTT...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCAACCACGTCTCCTGCTaGGTAGCTGCTGCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRNHVSC*VAAASA
Trigger: AGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTT...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACACCAAATGGGTATTTaGAGCTGCAGTAGGCTGAAG +
Preference number: 4 (lower is better)
Translates to: RIGLLERQYGPIQISSQRHQMGI*SCSRLK
Trigger: CTTCAGCCTACTGCAGCTCCAAATACCCATTTGGTG...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCATAGAAGTTGTTGGATaGTTTTCGTCTTCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSIEVVG*FSSSSG
Trigger: GCCGGAAGAAGACGAAAACCATCCAACAACTTCTAT...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCGCTCTTAGTGCTAGATaGCAGAATAGAAGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSALSAR*QNRSCW
Trigger: CCAACAACTTCTATTCTGCCATCTAGCACTAAGAGC...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp ACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCAATCTATTCTTCAGGAGGGGCTaGGGCATTGAAGCAATATGT +
Preference number: 4 (lower is better)
Translates to: TAGEAIWTHSNFLPETNLFFRRG*GIEAIC
Trigger: ACATATTGCTTCAATGCCTCAGCCCCTCCTGAAGAA...TAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCGCTAATTCGGATCCATaGGTCACAGTGCGGGAACTC +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILANSDP*VTVREL
Trigger: GAGTTCCCGCACTGTGACTCATGGATCCGAATTAGC...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCGCTAATTCGGATCCATaGGTCACAGTGCGGGAACTC +
Preference number: 4 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPANSDP*VTVREL
Trigger: GAGTTCCCGCACTGTGACTCATGGATCCGAATTAGC...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCTGTGCCAGGCTCAACTaGAAGAGGCAAAGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPCARLN*KRQSPQ
Trigger: TTGGGGACTTTGCCTCTTGCAGTTGAGCCTGGCACA...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCCAGTGCCAGGAGAGATaGCAAGATGATGAGCCATTC +
Preference number: 4 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIQCQER*QDDEPF
Trigger: GAATGGCTCATCATCTTGGCATCTCTCCTGGCACTG...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp AAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTGGGTAGGGATAAGGTTCAAAAGAATCAGAGCCAGTaGCAGGAGAGATGCCAAGAT +
Preference number: 4 (lower is better)
Translates to: KILSWWMFPGTLGRDKVQKNQSQ*QERCQD
Trigger: ATCTTGGCATCTCTCCTGGCACTGGCTCTGATTCTT...TTGAACCTTATCCCTACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTCACTGGGTCCAGTCCTaGTTGTCTTCTGTGCGGGCA +
Preference number: 4 (lower is better)
Translates to: TKSWSNSKSDCATRIITTHWVQS*LSSVRA
Trigger: TGCCCGCACAGAAGACAACCAGGACTGGACCCAGTG...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGTGCGGGAACTCCCCCTaGAGTCCTTGGATGAGTCTC +
Preference number: 4 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMCGNSP*SPWMSL
Trigger: GAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCA...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCTCAGCTGTCATACACTaGTCCGGGGTCTCTGATGGT +
Preference number: 4 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPSAVIH*SGVSDG
Trigger: ACCATCAGAGACCCCGGACCAGTGTATGACAGCTGA...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
3UTR CAA 72 bp AAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCTaGAACAGGAGAGAAACCCCTTTGAGAGCCTGGAAT +
Preference number: 4 (lower is better)
Translates to: KGLKLAYSHFRF*NRRETPLRAWN
Trigger: ATTCCAGGCTCTCAAAGGGGTTTCTCTCCTGTTCAAGAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCCCACATTTCCTTCTATaGACCCATACCTGCATGTTT +
Preference number: 4 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFPHFLL*THTCMF
Trigger: AAACATGCAGGTATGGGTTCATAGAAGGAAATGTGG...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTGCTAATTCGGATCCATaGGTCACAGTGCGGGAACTC +
Preference number: 4 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCANSDP*VTVREL
Trigger: GAGTTCCCGCACTGTGACTCATGGATCCGAATTAGC...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACAGCCATTCTGGAATCTaGGGTCTCCTCATAGGACCA +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHSHSGI*GLLIGP
Trigger: TGGTCCTATGAGGAGACCTCAGATTCCAGAATGGCT...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCAGCCATTCTGGAATCTaGGGTCTCCTCATAGGACCA +
Preference number: 4 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPSHSGI*GLLIGP
Trigger: TGGTCCTATGAGGAGACCTCAGATTCCAGAATGGCT...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCTCCCATTGCCACCGTTaGTCACCAGCTTTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: EKAPQVPTTMFCEITNKISHCHR*SPAFSS
Trigger: AGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGA...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGAAATGCACCATTTCCTaGGACTTGCTGGCCTCCCCG +
Preference number: 4 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKKCTIS*DLLASP
Trigger: CGGGGAGGCCAGCAAGTCTCAGGAAATGGTGCATTT...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCATGTTTCAAAACCCTTaGTCAGGGCCAACTTCATTT +
Preference number: 4 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETMFQNP*SGPTSF
Trigger: AAATGAAGTTGGCCCTGAGCAAGGGTTTTGAAACAT...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGAACCACGTCTCCTGCTaGGTAGCTGCTGCTTCTGCT +
Preference number: 4 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRNHVSC*VAAASA
Trigger: AGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTT...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCGTCCCTTCTGTCACATaGGAGTCTTCACTTGGGGTA +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILVPSVT*ESSLGV
Trigger: TACCCCAAGTGAAGACTCCCATGTGACAGAAGGGAC...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCGGGTTGTACTATGACTaGAGTCTGTATCCTTGCTTT +
Preference number: 4 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFGLYYD*SLYPCF
Trigger: AAAGCAAGGATACAGACTCCAGTCATAGTACAACCC...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CCA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCAAGTCTTCCACCAAATaGGTATTTGGAGCTGCAGTA +
Preference number: 4 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFKSSTK*VFGAAV
Trigger: TACTGCAGCTCCAAATACCCATTTGGTGGAAGACTT...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCTTCTTCAGGAGGGGCTaGGGCATTGAAGCAATATGT +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILFFRRG*GIEAIC
Trigger: ACATATTGCTTCAATGCCTCAGCCCCTCCTGAAGAA...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCGCATGGCTTTTTGAGTaGACAGTTGAGGCAATGGTG +
Preference number: 4 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRAWLFE*TVEAMV
Trigger: CACCATTGCCTCAACTGTGCACTCAAAAAGCCATGC...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR GCA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGATGGAGTCTGTATCCTTaGTTTCTGTTTGATGACCTT +
Preference number: 4 (lower is better)
Translates to: RIGLLERQYGPIQISSQRWSLYP*FLFDDL
Trigger: AAGGTCATCAAACAGAAAGCAAGGATACAGACTCCA...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CCA 90 bp AAGAGAAGGAAAGCCTCCAGGATATATGAGAAATTTATAGTTGATGGCAAAAGAGGGCTTCTTGCCTCTTaGGTGGTGTTTCAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: KRRKASRIYEKFIVDGKRGLLAS*VVFQGW
Trigger: CCACCCCTGAAACACCACCCAAGAGGCAAGAAGCCC...TCTTTTGCCATCAACTATAAATTTCTCATATATCCTGGAGGCTTTCCTTCTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp AAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTGGGTAGGGATAAGGTTCAATGTTATTCTTTGACTTaGATGGTTGTTGTGGGCCGA +
Preference number: 4 (lower is better)
Translates to: KILSWWMFPGTLGRDKVQCYSLT*MVVVGR
Trigger: TCGGCCCACAACAACCATCCAAGTCAAAGAATAACA...TTGAACCTTATCCCTACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CCA 90 bp ACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCAATCTAAAGTCTTCCACCAAATaGGTATTTGGAGCTGCAGTA +
Preference number: 4 (lower is better)
Translates to: TAGEAIWTHSNFLPETNLKSSTK*VFGAAV
Trigger: TACTGCAGCTCCAAATACCCATTTGGTGGAAGACTT...TAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGTCAGCTGTCATACACTaGTCCGGGGTCTCTGATGGT +
Preference number: 4 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKSAVIH*SGVSDG
Trigger: ACCATCAGAGACCCCGGACCAGTGTATGACAGCTGA...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTTCAGCTGTCATACACTaGTCCGGGGTCTCTGATGGT +
Preference number: 4 (lower is better)
Translates to: TKSWSNSKSDCATRIITTSAVIH*SGVSDG
Trigger: ACCATCAGAGACCCCGGACCAGTGTATGACAGCTGA...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCCCACATTTCCTTCTATaGACCCATACCTGCATGTTT +
Preference number: 4 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIPHFLL*THTCMF
Trigger: AAACATGCAGGTATGGGTTCATAGAAGGAAATGTGG...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTTTCTTCAGGAGGGGCTaGGGCATTGAAGCAATATGT +
Preference number: 4 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCFFRRG*GIEAIC
Trigger: ACATATTGCTTCAATGCCTCAGCCCCTCCTGAAGAA...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGCTGTGGAGTTGTCACTaGAAGTGGTCCTGTCCTGTT +
Preference number: 4 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKLWSCH*KWSCPV
Trigger: AACAGGACAGGACCACTTTCAGTGACAACTCCACAG...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp ACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCAATCTAATGTTTCAAAACCCTTaGTCAGGGCCAACTTCATTT +
Preference number: 4 (lower is better)
Translates to: TAGEAIWTHSNFLPETNLMFQNP*SGPTSF
Trigger: AAATGAAGTTGGCCCTGAGCAAGGGTTTTGAAACAT...TAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTAAGAATCAGAGCCAGTaGCAGGAGAGATGCCAAGAT +
Preference number: 4 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCKNQSQ*QERCQD
Trigger: ATCTTGGCATCTCTCCTGGCACTGGCTCTGATTCTT...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACTATCAGCCATCCTGGTaGTTGTCTGGAGTAGTACTT +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHYQPSW*LSGVVL
Trigger: AAGTACTACTCCAGACAACCACCAGGATGGCTGATA...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTGTCCCTTCTGTCACATaGGAGTCTTCACTTGGGGTA +
Preference number: 4 (lower is better)
Translates to: TKSWSNSKSDCATRIITTVPSVT*ESSLGV
Trigger: TACCCCAAGTGAAGACTCCCATGTGACAGAAGGGAC...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACGATGATGAGCCATTCTaGAATCTGAGGTCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHDDEPF*NLRSPH
Trigger: ATGAGGAGACCTCAGATTCCAGAATGGCTCATCATC...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGTTCTTCAGGAGGGGCTaGGGCATTGAAGCAATATGT +
Preference number: 4 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRFFRRG*GIEAIC
Trigger: ACATATTGCTTCAATGCCTCAGCCCCTCCTGAAGAA...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp ACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCAATCTACAATTATTTTGTTTCTaGGCTGCTGCATGGCTTTTT +
Preference number: 4 (lower is better)
Translates to: TAGEAIWTHSNFLPETNLQLFCF*AAAWLF
Trigger: AAAAAGCCATGCAGCAGCTCAGAAACAAAATAATTG...TAGATTGGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR TCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCCAGGAAACATCCTCTTaGCTCTGTGTTGTTATTCTT +
Preference number: 4 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIQETSS*LCVVIL
Trigger: AAGAATAACAACACAGAGTCAAGAGGATGTTTCCTG...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR GCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGATGTGCCAGGCTCAACTaGAAGAGGCAAAGTCCCCAA +
Preference number: 4 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRCARLN*KRQSPQ
Trigger: TTGGGGACTTTGCCTCTTGCAGTTGAGCCTGGCACA...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp CAGAAAGTCCGTGTATCTCCTTTAAGGAACATCTTCACATCCACTTTTGATATACAGTTCTGGGCTTCTTaGCTCTTGGGTGGTGTTTCA +
Preference number: 4 (lower is better)
Translates to: QKVRVSPLRNIFTSTFDIQFWAS*LLGGVS
Trigger: TGAAACACCACCCAAGAGGCAAGAAGCCCAGAACTG...TATATCAAAAGTGGATGTGAAGATGTTCCTTAAAGGAGATACACGGACTTTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR GCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGAAGAATCAGAGCCAGTaGCAGGAGAGATGCCAAGAT +
Preference number: 4 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRKNQSQ*QERCQD
Trigger: ATCTTGGCATCTCTCCTGGCACTGGCTCTGATTCTT...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGATGGTTTGGCTTCCACTaGGTCCAGTCCTGGTTGTCT +
Preference number: 4 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRWFGFH*VQSWLS
Trigger: AGACAACCAGGACTGGACCCAGTGGAAGCCAAACCA...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTCTATATCAGCCATCCTaGTGGTTGTCTGGAGTAGTA +
Preference number: 4 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCLYQPS*WLSGVV
Trigger: TACTACTCCAGACAACCACCAGGATGGCTGATATAG...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCGGGTTGTACTATGACTaGAGTCTGTATCCTTGCTTT +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILGLYYD*SLYPCF
Trigger: AAAGCAAGGATACAGACTCCAGTCATAGTACAACCC...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCATAGAAGTTGTTGGATaGTTTTCGTCTTCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILIEVVG*FSSSSG
Trigger: GCCGGAAGAAGACGAAAACCATCCAACAACTTCTAT...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp AAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTGGGTAGGGATAAGGTTCAACAGAATAGAAGTTGTTaGATGGTTTTCGTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: KILSWWMFPGTLGRDKVQQNRSC*MVFVFF
Trigger: GAAGAAGACGAAAACCATCCAACAACTTCTATTCTG...TTGAACCTTATCCCTACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp AAGAGAAGGAAAGCCTCCAGGATATATGAGAAATTTATAGTTGATGGCAAAAGATCAGCTGTCATACACTaGTCCGGGGTCTCTGATGGT +
Preference number: 4 (lower is better)
Translates to: KRRKASRIYEKFIVDGKRSAVIH*SGVSDG
Trigger: ACCATCAGAGACCCCGGACCAGTGTATGACAGCTGA...TCTTTTGCCATCAACTATAAATTTCTCATATATCCTGGAGGCTTTCCTTCTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCGTCATCTATAATGTTTaGAGCATCGATGTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIVIYNV*SIDVFL
Trigger: CAAGAAGACATCGATGCTTCAAACATTATAGATGAC...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACTTGGACTCTGATGGTTaGAATAACCATGAAAACCAG +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHLDSDG*NNHENQ
Trigger: CTGGTTTTCATGGTTATTTCAACCATCAGAGTCCAA...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR GCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACATGTTTCAAAACCCTTaGTCAGGGCCAACTTCATTT +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHMFQNP*SGPTSF
Trigger: AAATGAAGTTGGCCCTGAGCAAGGGTTTTGAAACAT...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACCTTCATCATCATCAATaGCTGATCCAGAAAAACTGG +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHLHHHQ*LIQKNW
Trigger: CCAGTTTTTCTGGATCAGGCATTGATGATGATGAAG...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR GCA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACTGGAGTCTGTATCCTTaGTTTCTGTTTGATGACCTT +
Preference number: 4 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHWSLYP*FLFDDL
Trigger: AAGGTCATCAAACAGAAAGCAAGGATACAGACTCCA...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CCA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGCCTGAGTCTGAGTTGTaGACTGTGAATTACCAAACC +
Preference number: 4 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMPESEL*TVNYQT
Trigger: GGTTTGGTAATTCACAGTCCACAACTCAGACTCAGG...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGAGTCCCTTCTGTCACATaGGAGTCTTCACTTGGGGTA +
Preference number: 4 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRVPSVT*ESSLGV
Trigger: TACCCCAAGTGAAGACTCCCATGTGACAGAAGGGAC...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTGATGATGAGCCATTCTaGAATCTGAGGTCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: TKSWSNSKSDCATRIITTDDEPF*NLRSPH
Trigger: ATGAGGAGACCTCAGATTCCAGAATGGCTCATCATC...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCGTCATCTATAATGTTTaGAGCATCGATGTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPVIYNV*SIDVFL
Trigger: CAAGAAGACATCGATGCTTCAAACATTATAGATGAC...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCGTCATCTATAATGTTTaGAGCATCGATGTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: APQVPTTMFCEITNKIILVIYNV*SIDVFL
Trigger: CAAGAAGACATCGATGCTTCAAACATTATAGATGAC...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGAAAGAATCAGAGCCAGTaGCAGGAGAGATGCCAAGAT +
Preference number: 4 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRKNQSQ*QERCQD
Trigger: ATCTTGGCATCTCTCCTGGCACTGGCTCTGATTCTT...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGAAGTCTTCCACCAAATaGGTATTTGGAGCTGCAGTA +
Preference number: 4 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRKSSTK*VFGAAV
Trigger: TACTGCAGCTCCAAATACCCATTTGGTGGAAGACTT...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCCAGAATAGAAGTTGTTaGATGGTTTTCGTCTTCTTC +
Preference number: 4 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPQNRSC*MVFVFF
Trigger: GAAGAAGACGAAAACCATCCAACAACTTCTATTCTG...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCTCTTAGTGCTAGATaGCAGAATAGAAGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKALSAR*QNRSCW
Trigger: CCAACAACTTCTATTCTGCCATCTAGCACTAAGAGC...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGTGTGTTGTTATTCTTTaGCTTGGATGGTTGTTGTGG +
Preference number: 4 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMCVVIL*LGWLLW
Trigger: CCACAACAACCATCCAAGTCAAAGAATAACAACACA...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CCA 90 bp AAGAGAAGGAAAGCCTCCAGGATATATGAGAAATTTATAGTTGATGGCAAAAGAGATGATGAGCCATTCTaGAATCTGAGGTCTCCTCAT +
Preference number: 4 (lower is better)
Translates to: KRRKASRIYEKFIVDGKRDDEPF*NLRSPH
Trigger: ATGAGGAGACCTCAGATTCCAGAATGGCTCATCATC...TCTTTTGCCATCAACTATAAATTTCTCATATATCCTGGAGGCTTTCCTTCTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
3UTR CAA 72 bp CCAGTGGAGAATAGCCAAGAATCATCTAGTGTCTATTaGAACAAGAAAACCAGGTGTCTAAATATGGAACTG +
Preference number: 4 (lower is better)
Translates to: PVENSQESSSVY*NKKTRCLNMEL
Trigger: CAGTTCCATATTTAGACACCTGGTTTTCTTGTTCAAATAGACACTAGATGATTCTTGGCTATTCTCCACTGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR TCA 90 bp TATGAGGGTAACAGCATTCTCCTTTTGCTAAACCATAAACCTGCTTATCTGATGGTCATCTATAATGTTTaGAGCATCGATGTCTTCTTG +
Preference number: 4 (lower is better)
Translates to: YEGNSILLLLNHKPAYLMVIYNV*SIDVFL
Trigger: CAAGAAGACATCGATGCTTCAAACATTATAGATGAC...CATCAGATAAGCAGGTTTATGGTTTAGCAAAAGGAGAATGCTGTTACCCTCATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGAATAGAAGTTGTTGGATaGTTTTCGTCTTCTTCCGGC +
Preference number: 4 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRIEVVG*FSSSSG
Trigger: GCCGGAAGAAGACGAAAACCATCCAACAACTTCTAT...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGAGCTCTTAGTGCTAGATaGCAGAATAGAAGTTGTTGG +
Preference number: 4 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRALSAR*QNRSCW
Trigger: CCAACAACTTCTATTCTGCCATCTAGCACTAAGAGC...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR GCA 90 bp AAGAGAAGGAAAGCCTCCAGGATATATGAGAAATTTATAGTTGATGGCAAAAGAATGTTTCAAAACCCTTaGTCAGGGCCAACTTCATTT +
Preference number: 4 (lower is better)
Translates to: KRRKASRIYEKFIVDGKRMFQNP*SGPTSF
Trigger: AAATGAAGTTGGCCCTGAGCAAGGGTTTTGAAACAT...TCTTTTGCCATCAACTATAAATTTCTCATATATCCTGGAGGCTTTCCTTCTCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CCA 90 bp ACAAAATCATGGAGTAACTCAAAGTCAGATTGTGCTACCAGAATCATCACCACTTATGAAGATGACTCTTaGACTCTGATGGTTGAAATA +
Preference number: 4 (lower is better)
Translates to: TKSWSNSKSDCATRIITTYEDDS*TLMVEI
Trigger: TATTTCAACCATCAGAGTCCAAGAGTCATCTTCATA...AGTGGTGATGATTCTGGTAGCACAATCTGACTTTGAGTTACTCCATGATTTTGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS GCA 90 bp CCCCTGCCATCCGTTCTGAAACCACGTCTCCTGCTGGGTAGCTGCTaGTTCTGCTGTACTATTAGGAGTGGTGGCCAAGGTGCTCCGGAT +
Preference number: 5 (lower is better)
Translates to: PLPSVLKPRLLLGSC*FCCTIRSGGQGAPD
Trigger: ATCCGGAGCACCTTGGCCACCACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAGAACGGATGGCAGGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000060516.14
CDS CCA 90 bp CCACTGGGTCCAGTCCTGGTTGTCTTCTGTGCGGGCAGAAACCCGTaGAGTACTTGCAATGGTGGCCAAGGTGCTCCGGATAAAGAAGGA +
Preference number: 5 (lower is better)
Translates to: PLGPVLVVFCAGRNP*STCNGGQGAPDKEG
Trigger: TCCTTCTTTATCCGGAGCACCTTGGCCACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111198.9
CDS TCA 90 bp TGTTCACCAAATGCACCATTTCCTGAGACTTGCTGGCCTCCCCGTTaGGCTCACTGGGTTTCCTGTCTTCCACCGTCCCATTGCCACCGT +
Preference number: 5 (lower is better)
Translates to: CSPNAPFPETCWPPR*AHWVSCLPPSHCHR
Trigger: ACGGTGGCAATGGGACGGTGGAAGACAGGAAACCCAGTGAGCTCAACGGGGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp GGTTCGCACTTGAGTGTCCAGCTAATTCGGATCCATGAGTCACAGTaGGGGAACTCCCCCTGGAGTCCTTGGATGAGTCTCGATCTCCTG +
Preference number: 5 (lower is better)
Translates to: GSHLSVQLIRIHESQ*GNSPWSPWMSLDLL
Trigger: CAGGAGATCGAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCACTGTGACTCATGGATCCGAATTAGCTGGACACTCAAGTGCGAACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp CCAGTCCTGGTTGTCTTCTGTGCGGGCAGAAACCCGTGGAGTACTTaGAATGGTGGCCAAGGTGCTCCGGATAAAGAAGGAGTCATCCTG +
Preference number: 5 (lower is better)
Translates to: PVLVVFCAGRNPWST*NGGQGAPDKEGVIL
Trigger: CAGGATGACTCCTTCTTTATCCGGAGCACCTTGGCCACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111198.9
CDS GCA 90 bp TTGAATGGTTTGGCTTCCACTGGGTCCAGTCCTGGTTGTCTTCTGTaGGGGCAGAAACCCGTGGAGTACTTGCAATGGTGGCCAAGGTGC +
Preference number: 5 (lower is better)
Translates to: LNGLASTGSSPGCLL*GQKPVEYLQWWPRC
Trigger: GCACCTTGGCCACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACCTGCTGCATGGCTTTTaGAGTGCACAGTTGAGGCAA +
Preference number: 5 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDLLHGF*SAQLRQ
Trigger: TTGCCTCAACTGTGCACTCAAAAAGCCATGCAGCAG...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp AAGAGCCCCAGGGAGCCTGTTGTGGGTGTGGTAGGCCAGGATAGCTCTAAGGACTGGAGTCTGTATCAGTaGTCCCTTCTGTCACATGGG +
Preference number: 5 (lower is better)
Translates to: KSPREPVVGVVGQDSSKDWSLYQ*SLLSHG
Trigger: CCCATGTGACAGAAGGGACAACTGATACAGACTCCA...GTCCTTAGAGCTATCCTGGCCTACCACACCCACAACAGGCTCCCTGGGGCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111194.8
CDS TCA 90 bp TCCGGGGTCTCTGATGGTTCCTTGTTCACCAAATGCACCATTTCCTaGGACTTGCTGGCCTCCCCGTTGAGCTCACTGGGTTTCCTGTCT +
Preference number: 5 (lower is better)
Translates to: SGVSDGSLFTKCTIS*DLLASPLSSLGFLS
Trigger: AGACAGGAAACCCAGTGAGCTCAACGGGGAGGCCAGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGAACCATCAGAGACCCCGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp CCCCTGCCATCCGTTCTGAAACCACGTCTCCTGCTGGGTAGCTGCTaGTTCTGCTGTACTATTAGGAGTTGTGCTTGTAGCATGTGGGGT +
Preference number: 5 (lower is better)
Translates to: PLPSVLKPRLLLGSC*FCCTIRSCACSMWG
Trigger: ACCCCACATGCTACAAGCACAACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAGAACGGATGGCAGGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp GACCGCGATGCAGACGGCAAGAATCAGAGCCAGTGCCAGGAGAGATaGCAAGATGATGAGCCATTCTGGAATCTGAGGTCTCCTCATAGG +
Preference number: 5 (lower is better)
Translates to: DRDADGKNQSQCQER*QDDEPFWNLRSPHR
Trigger: CCTATGAGGAGACCTCAGATTCCAGAATGGCTCATCATCTTGGCATCTCTCCTGGCACTGGCTCTGATTCTTGCCGTCTGCATCGCGGTC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp TCTTCCACCGTCCCATTGCCACCGTTGATCACCAGCTTTTTCTTCTaGCCACACCTTCTCCTACTATTGACCGCGATGCAGACGGCAAGA +
Preference number: 5 (lower is better)
Translates to: SSTVPLPPLITSFFF*PHLLLLLTAMQTAR
Trigger: TCTTGCCGTCTGCATCGCGGTCAATAGTAGGAGAAGGTGTGGGCAGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGACGGTGGAAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp CCATCCGTTCTGAAACCACGTCTCCTGCTGGGTAGCTGCTGCTTCTaGTGTACTATTAGGAGTGGTGGCCAAGGTGCTCCGGATAAAGAA +
Preference number: 5 (lower is better)
Translates to: PSVLKPRLLLGSCCF*CTIRSGGQGAPDKE
Trigger: TTCTTTATCCGGAGCACCTTGGCCACCACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAGAACGGATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060516.14
CDS CCA 90 bp GTTGTCTGGAGTAGTACTTCTGGGTTTGAATGGTTTGGCTTCCACTaGGTCCAGTCCTGGTTGTCTTCTGTGCGGGCAGAAACCCGTGGA +
Preference number: 5 (lower is better)
Translates to: VVWSSTSGFEWFGFH*VQSWLSSVRAETRG
Trigger: TCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGTACTACTCCAGACAAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS CCA 90 bp TCAGCCATCCTGGTGGTTGTCTGGAGTAGTACTTCTGGGTTTGAATaGTTTGGCTTCCACTGGGTCCAGTCCTGGTTGTCTTCTGTGCGG +
Preference number: 5 (lower is better)
Translates to: SAILVVVWSSTSGFE*FGFHWVQSWLSSVR
Trigger: CCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGTACTACTCCAGACAACCACCAGGATGGCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS TCA 90 bp CAGATTCCGGGTCTCGTCAGCTGTCATACACTGGTCCGGGGTCTCTaGTGGTTCCTTGTTCACCAAATGCACCATTTCCTGAGACTTGCT +
Preference number: 5 (lower is better)
Translates to: QIPGLVSCHTLVRGL*WFLVHQMHHFLRLA
Trigger: AGCAAGTCTCAGGAAATGGTGCATTTGGTGAACAAGGAACCATCAGAGACCCCGGACCAGTGTATGACAGCTGACGAGACCCGGAATCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp TCTCCTACTATTGACCGCGATGCAGACGGCAAGAATCAGAGCCAGTaGCAGGAGAGATGCCAAGATGATGAGCCATTCTGGAATCTGAGG +
Preference number: 5 (lower is better)
Translates to: SPTIDRDADGKNQSQ*QERCQDDEPFWNLR
Trigger: CCTCAGATTCCAGAATGGCTCATCATCTTGGCATCTCTCCTGGCACTGGCTCTGATTCTTGCCGTCTGCATCGCGGTCAATAGTAGGAGA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 90 bp TACACCTGCGTAGCGGCAGGTTACATTCAAATCGATCTGCTGATGTaGATGTGCCAGGCTCAACTGCAAGAGGCAAAGTCCCCAAGCTGT +
Preference number: 5 (lower is better)
Translates to: YTCVAAGYIQIDLLM*MCQAQLQEAKSPSC
Trigger: ACAGCTTGGGGACTTTGCCTCTTGCAGTTGAGCCTGGCACATCCACATCAGCAGATCGATTTGAATGTAACCTGCCGCTACGCAGGTGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 90 bp AGTAGGCTGTTCAGTAGGAAGGTAGGTGTGCAAAATGTAGCTTTCTaGGGTGCTCTTCTCGATGGTGGAGCCGCTGCTGACATCGTCATC +
Preference number: 5 (lower is better)
Translates to: SRLFSRKVGVQNVAF*GALLDGGAAADIVI
Trigger: GATGACGATGTCAGCAGCGGCTCCACCATCGAGAAGAGCACCCCAGAAAGCTACATTTTGCACACCTACCTTCCTACTGAACAGCCTACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 90 bp AGTACTTCTGGGTTTGAATGGTTTGGCTTCCACTGGGTCCAGTCCTaGTTGTCTTCTGTGCGGGCAGAAACCCGTGGAGTACTTGCAATG +
Preference number: 5 (lower is better)
Translates to: STSGFEWFGFHWVQS*LSSVRAETRGVLAM
Trigger: CATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGTACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS CCA 90 bp ATGTCCACACTCTGCAGATTCCGGGTCTCGTCAGCTGTCATACACTaGTCCGGGGTCTCTGATGGTTCCTTGTTCACCAAATGCACCATT +
Preference number: 5 (lower is better)
Translates to: MSTLCRFRVSSAVIH*SGVSDGSLFTKCTI
Trigger: AATGGTGCATTTGGTGAACAAGGAACCATCAGAGACCCCGGACCAGTGTATGACAGCTGACGAGACCCGGAATCTGCAGAGTGTGGACAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCGTGGGTAAGGTACTGTaGAAAGCCTGGCAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSVGKVL*KAWQRS
Trigger: TGACCTCTGCCAGGCTTTCAACAGTACCTTACCCAC...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCAGCTCCTGAGTCTGAGTaGTGGACTGTGAATTACCAA +
Preference number: 5 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPAPESE*WTVNYQ
Trigger: TTGGTAATTCACAGTCCACAACTCAGACTCAGGAGC...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCTTGGCTCCCAGCCTGTaGGGTTGGTATTTGACTCCG +
Preference number: 5 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETLAPSL*GWYLTP
Trigger: CGGAGTCAAATACCAACCCAACAGGCTGGGAGCCAA...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS TCA 90 bp GAGGCTGTGGTTCCGGGGTCCAATTTTCTCCATGAGCACTGGTGCTaGTTCTGTCTATATCAGCCATCCTGGTGGTTGTCTGGAGTAGTA +
Preference number: 5 (lower is better)
Translates to: EAVVPGSNFLHEHWC*FCLYQPSWWLSGVV
Trigger: TACTACTCCAGACAACCACCAGGATGGCTGATATAGACAGAATCAGCACCAGTGCTCATGGAGAAAATTGGACCCCGGAACCACAGCCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCGTGGGTAAGGTACTGTaGAAAGCCTGGCAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETVGKVL*KAWQRS
Trigger: TGACCTCTGCCAGGCTTTCAACAGTACCTTACCCAC...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCTTTTTGAGTGCACAGTaGAGGCAATGGTGGCCAAGG +
Preference number: 5 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSFLSAQ*RQWWPR
Trigger: CCTTGGCCACCATTGCCTCAACTGTGCACTCAAAAA...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp TTATTCAGACATCCAGACAATCACTTTCTGCCCCTCTCCACTTCCCAGACCCTTCCAGTTCTGGGCTTCTaGCCTCTTGGGTGGTGTTTC +
Preference number: 5 (lower is better)
Translates to: LFRHPDNHFLPLSTSQTLPVLGF*PLGWCF
Trigger: GAAACACCACCCAAGAGGCAAGAAGCCCAGAACTGG...AAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCGATGACCTTGTCCCATaGGATGTGAGATTGGGTCGA +
Preference number: 5 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSDDLVP*DVRLGR
Trigger: TCGACCCAATCTCACATCCAATGGGACAAGGTCATC...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp TCAGTAGCACATTGCATCTGTGGAGGGTCCCAGCTCCCAGGAATGACGTCTCCAATCCTTGCTTTCTGTTaGATGACCTTGTCCCATTGG +
Preference number: 5 (lower is better)
Translates to: SVAHCICGGSQLPGMTSPILAFC*MTLSHW
Trigger: CCAATGGGACAAGGTCATCAAACAGAAAGCAAGGAT...TGGAGACGTCATTCCTGGGAGCTGGGACCCTCCACAGATGCAATGTGCTACTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCGTCCCATTGCCACCGTaGATCACCAGCTTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSVPLPP*ITSFFF
Trigger: GAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGAC...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS GCA 90 bp CCGGGAGATACTGTAGCGGCCATTTTTCTCCACATGGAATACACCTaGGTAGCGGCAGGTTACATTCAAATCGATCTGCTGATGTGGATG +
Preference number: 5 (lower is better)
Translates to: PGDTVAAIFLHMEYT*VAAGYIQIDLLMWM
Trigger: CATCCACATCAGCAGATCGATTTGAATGTAACCTGCCGCTACGCAGGTGTATTCCATGTGGAGAAAAATGGCCGCTACAGTATCTCCCGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 90 bp GGAGGTGTTGGACGTGACGAGGATATATACTCCTGTGTGGTTGGCTaGACAGATAGCGTTGGGATGAATCCTCGGAATTACCACATTTCC +
Preference number: 5 (lower is better)
Translates to: GGVGRDEDIYSCVVG*TDSVGMNPRNYHIS
Trigger: GGAAATGTGGTAATTCCGAGGATTCATCCCAACGCTATCTGTGCAGCCAACCACACAGGAGTATATATCCTCGTCACGTCCAACACCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCGGTCCATCGAAGGAATaGGGTAGGTCTGTGACTGAT +
Preference number: 5 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETGPSKE*GRSVTD
Trigger: ATCAGTCACAGACCTACCCAATTCCTTCGATGGACC...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCGTCCCATTGCCACCGTaGATCACCAGCTTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETVPLPP*ITSFFF
Trigger: GAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGAC...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS TCA 90 bp TGGTTATTGAAAGGAGGCTGTGGTTCCGGGGTCCAATTTTCTCCATaGGCACTGGTGCTGATTCTGTCTATATCAGCCATCCTGGTGGTT +
Preference number: 5 (lower is better)
Translates to: WLLKGGCGSGVQFSP*ALVLILSISAILVV
Trigger: AACCACCAGGATGGCTGATATAGACAGAATCAGCACCAGTGCTCATGGAGAAAATTGGACCCCGGAACCACAGCCTCCTTTCAATAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCCCATCAACATTAACGTaGGAGTCAGTAGCAAGAGTC +
Preference number: 5 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSPSTLT*ESVARV
Trigger: GACTCTTGCTACTGACTCCAACGTTAATGTTGATGG...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp TTATTCAGACATCCAGACAATCACTTTCTGCCCCTCTCCACTTCCCAGACCCTTGTCCCATTGCCACCGTaGATCACCAGCTTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: LFRHPDNHFLPLSTSQTLVPLPP*ITSFFF
Trigger: GAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGAC...AAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp TTCAATGAGATTGAGCTGGGTGAACCCAGCAGGCTCAGATGCTCTAGCATGAGCGTCTCTGATGGTTCCTaGTTCACCAAATGCACCATT +
Preference number: 5 (lower is better)
Translates to: FNEIELGEPSRLRCSSMSVSDGS*FTKCTI
Trigger: AATGGTGCATTTGGTGAACAAGGAACCATCAGAGAC...GCTCATGCTAGAGCATCTGAGCCTGCTGGGTTCACCCAGCTCAATCTCATTGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS GCA 90 bp TGGTCCTGTCCTGTTCAAGTCTTCCACCAAATGGGTATTTGGAGCTaGAGTAGGCTGAAGGGTTGTACTATGACTGGAGTCTGTATCCTT +
Preference number: 5 (lower is better)
Translates to: WSCPVQVFHQMGIWS*SRLKGCTMTGVCIL
Trigger: AAGGATACAGACTCCAGTCATAGTACAACCCTTCAGCCTACTGCAGCTCCAAATACCCATTTGGTGGAAGACTTGAACAGGACAGGACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS GCA 90 bp TGGTCCTGTCCTGTTCAAGTCTTCCACCAAATGGGTATTTGGAGCTaGAGTAGGCTGAAGGGTTGTACTATGACTGGAGTCTGTATCAGT +
Preference number: 5 (lower is better)
Translates to: WSCPVQVFHQMGIWS*SRLKGCTMTGVCIS
Trigger: ACTGATACAGACTCCAGTCATAGTACAACCCTTCAGCCTACTGCAGCTCCAAATACCCATTTGGTGGAAGACTTGAACAGGACAGGACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111194.8
CDS GCA 90 bp TGGTCCTGTCCTGTTCAAGTCTTCCACCAAATGGGTATTTGGAGCTaGAGTAGGCTGAAGGGTTGTACTATGACTGGAGTCTGTATTGGT +
Preference number: 5 (lower is better)
Translates to: WSCPVQVFHQMGIWS*SRLKGCTMTGVCIG
Trigger: ACCAATACAGACTCCAGTCATAGTACAACCCTTCAGCCTACTGCAGCTCCAAATACCCATTTGGTGGAAGACTTGAACAGGACAGGACCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111191.9
CDS CCA 90 bp ACTTCCACCTCTTCTTGCATCTTTAGCGCCGCTCTTAGTGCTAGATaGCAGAATAGAAGTTGTTGGATGGTTTTCGTCTTCTTCCGGCTC +
Preference number: 5 (lower is better)
Translates to: TSTSSCIFSAALSAR*QNRSCWMVFVFFRL
Trigger: GAGCCGGAAGAAGACGAAAACCATCCAACAACTTCTATTCTGCCATCTAGCACTAAGAGCGGCGCTAAAGATGCAAGAAGAGGTGGAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCTCCCAGCCTGTTGGGTaGGTATTTGACTCCGTACCA +
Preference number: 5 (lower is better)
Translates to: EKAPQVPTTMFCEITNKISQPVG*VFDSVP
Trigger: TGGTACGGAGTCAAATACCAACCCAACAGGCTGGGA...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCGTAGTACTTCTGGGTTaGAATGGTTTGGCTTCCACT +
Preference number: 5 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETVVLLG*NGLAST
Trigger: AGTGGAAGCCAAACCATTCAAACCCAGAAGTACTAC...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp GATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGACCATCCTTGCTTTCTGTTaGATGACCTTGTCCCATTGG +
Preference number: 5 (lower is better)
Translates to: DWTAGEAIWTHSNFLPETILAFC*MTLSHW
Trigger: CCAATGGGACAAGGTCATCAAACAGAAAGCAAGGAT...GGTCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS TCA 90 bp CTTCTCGATGGTGGAGCCGCTGCTGACATCGTCATCTATAATGTTTaGAGCATCGATGTCTTCTTGGTGTGTTCTATACTCGCCCTTCTT +
Preference number: 5 (lower is better)
Translates to: LLDGGAAADIVIYNV*SIDVFLVCSILALL
Trigger: AAGAAGGGCGAGTATAGAACACACCAAGAAGACATCGATGCTTCAAACATTATAGATGACGATGTCAGCAGCGGCTCCACCATCGAGAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 90 bp AGCTGCTGCTTCTGCTGTACTATTAGGAGTTGTGCTTGTAGCATGTaGGGTCTCCTCTTCATCCTGATACTCATGGTTATTGAAAGGAGG +
Preference number: 5 (lower is better)
Translates to: SCCFCCTIRSCACSM*GLLFILILMVIERR
Trigger: CCTCCTTTCAATAACCATGAGTATCAGGATGAAGAGGAGACCCCACATGCTACAAGCACAACTCCTAATAGTACAGCAGAAGCAGCAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 90 bp TGTCCAGGAAACATCCTCTTGACTCTGTGTTGTTATTCTTTGACTTaGATGGTTGTTGTGGGCCGAAGCAGTTGTCCCTTCTGTCACATG +
Preference number: 5 (lower is better)
Translates to: CPGNILLTLCCYSLT*MVVVGRSSCPFCHM
Trigger: CATGTGACAGAAGGGACAACTGCTTCGGCCCACAACAACCATCCAAGTCAAAGAATAACAACACAGAGTCAAGAGGATGTTTCCTGGACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCGTGGGTAAGGTACTGTaGAAAGCCTGGCAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRVGKVL*KAWQRS
Trigger: TGACCTCTGCCAGGCTTTCAACAGTACCTTACCCAC...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCGTGGGTAAGGTACTGTaGAAAGCCTGGCAGAGGTCA +
Preference number: 5 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPVGKVL*KAWQRS
Trigger: TGACCTCTGCCAGGCTTTCAACAGTACCTTACCCAC...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCCTGGGTTTGAATGGTTaGGCTTCCACTGGGTCCAGT +
Preference number: 5 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPLGLNG*ASTGSS
Trigger: ACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAG...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCAGCCATCCTGGTGGTaGTCTGGAGTAGTACTTCTG +
Preference number: 5 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRQPSWW*SGVVLL
Trigger: CAGAAGTACTACTCCAGACAACCACCAGGATGGCTG...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGAGAGTCCCATTTTCCATaGTGTCTGGGTATTGAAAGG +
Preference number: 5 (lower is better)
Translates to: RIGLLERQYGPIQISSQRESHFP*CLGIER
Trigger: CCTTTCAATACCCAGACACAATGGAAAATGGGACTC...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp GTGGTCACCAAAGCACAAAAGGGACTGAAGCTTGCCTACTCTCACTTCAGATTCCCATCAACATTAACGTaGGAGTCAGTAGCAAGAGTC +
Preference number: 5 (lower is better)
Translates to: VVTKAQKGLKLAYSHFRFPSTLT*ESVARV
Trigger: GACTCTTGCTACTGACTCCAACGTTAATGTTGATGG...GAATCTGAAGTGAGAGTAGGCAAGCTTCAGTCCCTTTTGTGCTTTGGTGACCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp AGGATTGGACTGCTGGAGAGGCAATATGGACCCATTCAAATTTCCTCCCAGAGAGTCTCTGATGGTTCCTaGTTCACCAAATGCACCATT +
Preference number: 5 (lower is better)
Translates to: RIGLLERQYGPIQISSQRVSDGS*FTKCTI
Trigger: AATGGTGCATTTGGTGAACAAGGAACCATCAGAGAC...TCTCTGGGAGGAAATTTGAATGGGTCCATATTGCCTCTCCAGCAGTCCAATCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS TCA 90 bp AGGATATATACTCCTGTGTGGTTGGCTGCACAGATAGCGTTGGGATaGATCCTCGGAATTACCACATTTCCTTCTATGAACCCATACCTG +
Preference number: 5 (lower is better)
Translates to: RIYTPVWLAAQIALG*ILGITTFPSMNPYL
Trigger: CAGGTATGGGTTCATAGAAGGAAATGTGGTAATTCCGAGGATTCATCCCAACGCTATCTGTGCAGCCAACCACACAGGAGTATATATCCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 90 bp TTAGCGCCGCTCTTAGTGCTAGATGGCAGAATAGAAGTTGTTGGATaGTTTTCGTCTTCTTCCGGCTCTCCATGTAATGTAGAGAAGTTC +
Preference number: 5 (lower is better)
Translates to: LAPLLVLDGRIEVVG*FSSSSGSPCNVEKF
Trigger: GAACTTCTCTACATTACATGGAGAGCCGGAAGAAGACGAAAACCATCCAACAACTTCTATTCTGCCATCTAGCACTAAGAGCGGCGCTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp TTATTCAGACATCCAGACAATCACTTTCTGCCCCTCTCCACTTCCCAGACCCTTTACCAGGCATCTTCGTaGTTGTATGAAGATGACTCT +
Preference number: 5 (lower is better)
Translates to: LFRHPDNHFLPLSTSQTLYQASS*LYEDDS
Trigger: AGAGTCATCTTCATACAACAACGAAGATGCCTGGTA...AAGGGTCTGGGAAGTGGAGAGGGGCAGAAAGTGATTGTCTGGATGTCTGAATAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp AAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTGGGTAGGGATAAGGTTCAATTGTTATTCTTTGACTaGGATGGTTGTTGTGGGCCG +
Preference number: 5 (lower is better)
Translates to: KILSWWMFPGTLGRDKVQLLFFD*DGCCGP
Trigger: CGGCCCACAACAACCATCCAAGTCAAAGAATAACAA...TTGAACCTTATCCCTACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCCCATTGGATGTGAGATaGGGTCGAAGAAATCTGTCC +
Preference number: 5 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIPLDVR*GRRNLS
Trigger: GGACAGATTTCTTCGACCCAATCTCACATCCAATGG...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp GCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCATTCTCGATGACCTTGTCCCATaGGATGTGAGATTGGGTCGA +
Preference number: 5 (lower is better)
Translates to: APQVPTTMFCEITNKIILDDLVP*DVRLGR
Trigger: TCGACCCAATCTCACATCCAATGGGACAAGGTCATC...GAGAATGATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp AAAATCCTTAGCTGGTGGATGTTCCCTGGGACTTTGGGTAGGGATAAGGTTCAACCATCAACATTAACGTaGGAGTCAGTAGCAAGAGTC +
Preference number: 5 (lower is better)
Translates to: KILSWWMFPGTLGRDKVQPSTLT*ESVARV
Trigger: GACTCTTGCTACTGACTCCAACGTTAATGTTGATGG...TTGAACCTTATCCCTACCCAAAGTCCCAGGGAACATCCACCAGCTAAGGATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCGTCCCATTGCCACCGTaGATCACCAGCTTTTTCTTC +
Preference number: 5 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPVPLPP*ITSFFF
Trigger: GAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGAC...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS TCA 90 bp GTCTGTATCCTTGCTTTCTGTTTGATGACCTTGTCCCATTGGATGTaGGATTGGGTCGAAGAAATCTGTCCAGGAAACATCCTCTTGACT +
Preference number: 5 (lower is better)
Translates to: VCILAFCLMTLSHWM*DWVEEICPGNILLT
Trigger: AGTCAAGAGGATGTTTCCTGGACAGATTTCTTCGACCCAATCTCACATCCAATGGGACAAGGTCATCAAACAGAAAGCAAGGATACAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS-3UTR CAA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCGAGTCCCATTTTCCATaGTGTCTGGGTATTGAAAGG +
Preference number: 5 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIESHFP*CLGIER
Trigger: CCTTTCAATACCCAGACACAATGGAAAATGGGACTC...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp CGGGTCAAGATGGAAGATGGACCGGTACTTATTATGAATCAATTTATACCCTGTCCATTGGATGTGAGATaGGGTCGAAGAAATCTGTCC +
Preference number: 5 (lower is better)
Translates to: RVKMEDGPVLIMNQFIPCPLDVR*GRRNLS
Trigger: GGACAGATTTCTTCGACCCAATCTCACATCCAATGG...ACAGGGTATAAATTGATTCATAATAAGTACCGGTCCATCTTCCATCTTGACCCG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp TGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCCACGAGTCCCATTTTCCATaGTGTCTGGGTATTGAAAGG +
Preference number: 5 (lower is better)
Translates to: WMFTLSFLLASPFMRRRHESHFP*CLGIER
Trigger: CCTTTCAATACCCAGACACAATGGAAAATGGGACTC...GTGGCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp TGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCGCGTCTCTGATGGTTCCTaGTTCACCAAATGCACCATT +
Preference number: 5 (lower is better)
Translates to: CWMFTLSFLLASPFMRRRVSDGS*FTKCTI
Trigger: AATGGTGCATTTGGTGAACAAGGAACCATCAGAGAC...GCGCCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111194.8
CDS-3UTR CAA 90 bp GAGAAGGCGCCACAAGTCCCCACCACAATGTTTTGTGAAATCACTAATAAGATCCCATATCCAATTATTTaGTTTCTGAGCTGCTGCATG +
Preference number: 5 (lower is better)
Translates to: EKAPQVPTTMFCEITNKIPYPII*FLSCCM
Trigger: CATGCAGCAGCTCAGAAACAAAATAATTGGATATGG...GATCTTATTAGTGATTTCACAAAACATTGTGGTGGGGACTTGTGGCGCCTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS-3UTR CAA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGTTGTTATTCTTTGACTaGGATGGTTGTTGTGGGCCG +
Preference number: 5 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKLLFFD*DGCCGP
Trigger: CGGCCCACAACAACCATCCAAGTCAAAGAATAACAA...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp CCCCTAGGAAGGAACTGGAAAAGTCAAATTCTTAATGGAGTATTATTTGGGCCCCCTCTTGACTCTGTGTaGTTATTCTTTGACTTGGAT +
Preference number: 5 (lower is better)
Translates to: PLGRNWKSQILNGVLFGPPLDSV*LFFDLD
Trigger: ATCCAAGTCAAAGAATAACAACACAGAGTCAAGAGG...GGGCCCAAATAATACTCCATTAAGAATTTGACTTTTCCAGTTCCTTCCTAGGGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp CTACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGCCAGGAAACATCCTCTaGACTCTGTGTTGTTATTCT +
Preference number: 5 (lower is better)
Translates to: LLLDVYTFISVGFSFYEKPGNIL*TLCCYS
Trigger: AGAATAACAACACAGAGTCAAGAGGATGTTTCCTGG...CTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp TACTGCTGGATGTTTACACTTTCATTTCTGTTGGCTTCTCCTTTTATGAGAAGGCCAGGAAACATCCTCTaGACTCTGTGTTGTTATTCT +
Preference number: 5 (lower is better)
Translates to: YCWMFTLSFLLASPFMRRPGNIL*TLCCYS
Trigger: AGAATAACAACACAGAGTCAAGAGGATGTTTCCTGG...CCTTCTCATAAAAGGAGAAGCCAACAGAAATGAAAGTGTAAACATCCAGCAGTA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
CDS-3UTR CAA 90 bp AATATGGACATGAAGGTATCTTTCACCTCATTTGATTTTTACCCAAGGCAAAGACCTCTTGACTCTGTGTaGTTATTCTTTGACTTGGAT +
Preference number: 5 (lower is better)
Translates to: NMDMKVSFTSFDFYPRQRPLDSV*LFFDLD
Trigger: ATCCAAGTCAAAGAATAACAACACAGAGTCAAGAGG...TCTTTGCCTTGGGTAAAAATCAAATGAGGTGAAAGATACCTTCATGTCCATATT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS TCA 72 bp AGTCACAGTGCGGGAACTCCCCCTGGAGTCCTTGGATaGGTCTCGATCTCTGGTGGCCAAGGTGCTCCGGAT +
Preference number: 6 (lower is better)
Translates to: SHSAGTPPGVLG*VSISGGQGAPD
Trigger: ATCCGGAGCACCTTGGCCACCAGAGATCGAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCACTGTGACT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099673.9
CDS CCA 72 bp CCAGTCCTGGTTGTCTTCTGTGCGGGCAGAAACCCGTaGAGTACTTGCAATGGTGGCCAAGGTGCTCCGGAT +
Preference number: 6 (lower is better)
Translates to: PVLVVFCAGRNP*STCNGGQGAPD
Trigger: ATCCGGAGCACCTTGGCCACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111198.9
CDS CAA 90 bp GCCTCCCCGTTGAGCTCACTGGGTTTCCTGTCTTCCACCGTCCCATaGCCACCGTTGATCACCAGCTTTTTCTTCTGCCCACACCTTCTC +
Preference number: 6 (lower is better)
Translates to: ASPLSSLGFLSSTVP*PPLITSFFFCPHLL
Trigger: GAGAAGGTGTGGGCAGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGACGGTGGAAGACAGGAAACCCAGTGAGCTCAACGGGGAGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp CTGAAACCACGTCTCCTGCTGGGTAGCTGCTGCTTCTaGTGTACTATTAGGAGTGGTGGCCAAGGTGCTCCG +
Preference number: 6 (lower is better)
Translates to: LKPRLLLGSCCF*CTIRSGGQGAP
Trigger: CGGAGCACCTTGGCCACCACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060516.14
CDS GCA 72 bp TTGGCTTCCACTGGGTCCAGTCCTGGTTGTCTTCTGTaGGGGCAGAAACCCGTGGAGTACTTGCAATGGTGG +
Preference number: 6 (lower is better)
Translates to: LASTGSSPGCLL*GQKPVEYLQWW
Trigger: CCACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000111198.9
CDS CCA 72 bp ATTCGGATCCATGAGTCACAGTGCGGGAACTCCCCCTaGAGTCCTTGGATGAGTCTCGATCTCTGGTGGCCA +
Preference number: 6 (lower is better)
Translates to: IRIHESQCGNSP*SPWMSLDLWWP
Trigger: TGGCCACCAGAGATCGAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCACTGTGACTCATGGATCCGAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000099673.9
CDS TCA 72 bp TGGTTCGCACTTGAGTGTCCAGCTAATTCGGATCCATaGGTCACAGTGCGGGAACTCCCCCTGGAGTCCTTG +
Preference number: 6 (lower is better)
Translates to: WFALECPANSDP*VTVRELPLESL
Trigger: CAAGGACTCCAGGGGGAGTTCCCGCACTGTGACTCATGGATCCGAATTAGCTGGACACTCAAGTGCGAACCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp TTGGCTTCCACTGGGTCCAGTCCTGGTTGTCTTCTGTaGGGGCAGAAACCCGTGGAGTACTTGCAATGGTAC +
Preference number: 6 (lower is better)
Translates to: LASTGSSPGCLL*GQKPVEYLQWY
Trigger: GTACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CCA 72 bp GGGTTTGAATGGTTTGGCTTCCACTGGGTCCAGTCCTaGTTGTCTTCTGTGCGGGCAGAAACCCGTGGAGTA +
Preference number: 6 (lower is better)
Translates to: GFEWFGFHWVQS*LSSVRAETRGV
Trigger: TACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS CCA 72 bp ATTCGGATCCATGAGTCACAGTGCGGGAACTCCCCCTaGAGTCCTTGGATGAGTCTCGATCTCCTGGTAAGG +
Preference number: 6 (lower is better)
Translates to: IRIHESQCGNSP*SPWMSLDLLVR
Trigger: CCTTACCAGGAGATCGAGACTCATCCAAGGACTCCAGGGGGAGTTCCCGCACTGTGACTCATGGATCCGAAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 90 bp CCATCCTGGTGGTTGTCTGGAGTAGTACTTCTGGGTTTGAATGGTTaGGCTTCCACTGGGTCCAGTCCTGGTTGTCTTCTGTGCGGGCAG +
Preference number: 6 (lower is better)
Translates to: PSWWLSGVVLLGLNG*ASTGSSPGCLLCGQ
Trigger: CTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGTACTACTCCAGACAACCACCAGGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS TCA 72 bp TGGGTTTCCTGTCTTCCACCGTCCCATTGCCACCGTTaGTCACCAGCTTTTTCTTCTGCCCACACCTTCTCC +
Preference number: 6 (lower is better)
Translates to: WVSCLPPSHCHR*SPAFSSAHTFS
Trigger: GGAGAAGGTGTGGGCAGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGACGGTGGAAGACAGGAAACCCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp TCCGTTCTGAAACCACGTCTCCTGCTGGGTAGCTGCTaGTTCTGCTGTACTATTAGGAGTGGTGGCCAAGGT +
Preference number: 6 (lower is better)
Translates to: SVLKPRLLLGSC*FCCTIRSGGQG
Trigger: ACCTTGGCCACCACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAGAACGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060516.14
CDS GCA 72 bp CCATCCGTTCTGAAACCACGTCTCCTGCTGGGTAGCTaGTGCTTCTGCTGTACTATTAGGAGTGGTGGCCAA +
Preference number: 6 (lower is better)
Translates to: PSVLKPRLLLGS*CFCCTIRSGGQ
Trigger: TTGGCCACCACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAGAACGGATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000060516.14
CDS CCA 72 bp CTCTGCAGATTCCGGGTCTCGTCAGCTGTCATACACTaGTCCGGGGTCTCTGATGGTTCCTTGTTCACCAAA +
Preference number: 6 (lower is better)
Translates to: LCRFRVSSAVIH*SGVSDGSLFTK
Trigger: TTTGGTGAACAAGGAACCATCAGAGACCCCGGACCAGTGTATGACAGCTGACGAGACCCGGAATCTGCAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp CTGGGTTTCCTGTCTTCCACCGTCCCATTGCCACCGTaGATCACCAGCTTTTTCTTCTGCCCACACCTTCTC +
Preference number: 6 (lower is better)
Translates to: LGFLSSTVPLPP*ITSFFFCPHLL
Trigger: GAGAAGGTGTGGGCAGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGACGGTGGAAGACAGGAAACCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 90 bp ACTTCTGGGTTTGAATGGTTTGGCTTCCACTGGGTCCAGTCCTGGTaGTCTTCTGTGCGGGCAGAAACCCGTGGAGTACTTGCAATGGTG +
Preference number: 6 (lower is better)
Translates to: TSGFEWFGFHWVQSW*SSVRAETRGVLAMV
Trigger: CACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111198.9
CDS TCA 72 bp CCAGCTTTTTCTTCTGCCCACACCTTCTCCTACTATTaGCCGCGATGCAGACGGCAAGAATCAGAGCCAGTG +
Preference number: 6 (lower is better)
Translates to: PAFSSAHTFSYY*PRCRRQESEPV
Trigger: CACTGGCTCTGATTCTTGCCGTCTGCATCGCGGTCAATAGTAGGAGAAGGTGTGGGCAGAAGAAAAAGCTGG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS TCA 72 bp GGTCTCGTCAGCTGTCATACACTGGTCCGGGGTCTCTaGTGGTTCCTTGTTCACCAAATGCACCATTTCCTG +
Preference number: 6 (lower is better)
Translates to: GLVSCHTLVRGL*WFLVHQMHHFL
Trigger: CAGGAAATGGTGCATTTGGTGAACAAGGAACCATCAGAGACCCCGGACCAGTGTATGACAGCTGACGAGACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS TCA 72 bp GTTCCGGGGTCCAATTTTCTCCATGAGCACTGGTGCTaGTTCTGTCTATATTGGTGGCCAAGGTGCTCCGGA +
Preference number: 6 (lower is better)
Translates to: VPGSNFLHEHWC*FCLYWWPRCSG
Trigger: TCCGGAGCACCTTGGCCACCAATATAGACAGAATCAGCACCAGTGCTCATGGAGAAAATTGGACCCCGGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111194.8
CDS CCA 72 bp TTCAGTAGGAAGGTAGGTGTGCAAAATGTAGCTTTCTaGGGTGCTCTTCTCGATGGTGGAGCCGCTGCTGAC +
Preference number: 6 (lower is better)
Translates to: FSRKVGVQNVAF*GALLDGGAAAD
Trigger: GTCAGCAGCGGCTCCACCATCGAGAAGAGCACCCCAGAAAGCTACATTTTGCACACCTACCTTCCTACTGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp TTTGAATGGTTTGGCTTCCACTGGGTCCAGTCCTGGTaGTCTTCTGTGCGGGCAGAAACCCGTGGAGTACTT +
Preference number: 6 (lower is better)
Translates to: FEWFGFHWVQSW*SSVRAETRGVL
Trigger: AAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS CAA 72 bp TTGAGCTCACTGGGTTTCCTGTCTTCCACCGTCCCATaGCCACCGTTGATCACCAGCTTTTTCTTCTGCCCA +
Preference number: 6 (lower is better)
Translates to: LSSLGFLSSTVP*PPLITSFFFCP
Trigger: TGGGCAGAAGAAAAAGCTGGTGATCAACGGTGGCAATGGGACGGTGGAAGACAGGAAACCCAGTGAGCTCAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 90 bp ACTTCTGGGTTTGAATGGTTTGGCTTCCACTGGGTCCAGTCCTGGTaGTCTTCTGTGCGGGCAGAAACCCGTGGAGTACTTGCAATGGTA +
Preference number: 6 (lower is better)
Translates to: TSGFEWFGFHWVQSW*SSVRAETRGVLAMV
Trigger: TACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS TCA 72 bp AAAGGAGGCTGTGGTTCCGGGGTCCAATTTTCTCCATaGGCACTGGTGCTGATTCTGTCTATATTGGTGGCC +
Preference number: 6 (lower is better)
Translates to: KGGCGSGVQFSP*ALVLILSILVA
Trigger: GGCCACCAATATAGACAGAATCAGCACCAGTGCTCATGGAGAAAATTGGACCCCGGAACCACAGCCTCCTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000111194.8
CDS GCA 72 bp CTGAAACCACGTCTCCTGCTGGGTAGCTGCTGCTTCTaGTGTACTATTAGGAGTTGTGCTTGTAGCATGTGG +
Preference number: 6 (lower is better)
Translates to: LKPRLLLGSCCF*CTIRSCACSMW
Trigger: CCACATGCTACAAGCACAACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp TCCGTTCTGAAACCACGTCTCCTGCTGGGTAGCTGCTaGTTCTGCTGTACTATTAGGAGTTGTGCTTGTAGC +
Preference number: 6 (lower is better)
Translates to: SVLKPRLLLGSC*FCCTIRSCACS
Trigger: GCTACAAGCACAACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAGAACGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp CCATCCGTTCTGAAACCACGTCTCCTGCTGGGTAGCTaGTGCTTCTGCTGTACTATTAGGAGTTGTGCTTGT +
Preference number: 6 (lower is better)
Translates to: PSVLKPRLLLGS*CFCCTIRSCAC
Trigger: ACAAGCACAACTCCTAATAGTACAGCAGAAGCAGCAGCTACCCAGCAGGAGACGTGGTTTCAGAACGGATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 72 bp GTAGCGGCAGGTTACATTCAAATCGATCTGCTGATGTaGATGTGCCAGGCTCAACTGCAAGAGGCAAAGTCC +
Preference number: 6 (lower is better)
Translates to: VAAGYIQIDLLM*MCQAQLQEAKS
Trigger: GGACTTTGCCTCTTGCAGTTGAGCCTGGCACATCCACATCAGCAGATCGATTTGAATGTAACCTGCCGCTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 72 bp CTGGTGGTTGTCTGGAGTAGTACTTCTGGGTTTGAATaGTTTGGCTTCCACTGGGTCCAGTCCTGGTTGTCT +
Preference number: 6 (lower is better)
Translates to: LVVVWSSTSGFE*FGFHWVQSWLS
Trigger: AGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGTACTACTCCAGACAACCACCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS CCA 72 bp CTCATAGGACCAGAAGTTGTGGTCACTCCACTGTCCTaGTTCGCACTTGAGTGTCCAGCTAATTCGGATCCA +
Preference number: 6 (lower is better)
Translates to: LIGPEVVVTPLS*FALECPANSDP
Trigger: TGGATCCGAATTAGCTGGACACTCAAGTGCGAACCAGGACAGTGGAGTGACCACAACTTCTGGTCCTATGAG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp CAGAAGTTGTGGTCACTCCACTGTCCTGGTTCGCACTaGAGTGTCCAGCTAATTCGGATCCATGAGTCACAG +
Preference number: 6 (lower is better)
Translates to: QKLWSLHCPGSH*SVQLIRIHESQ
Trigger: CTGTGACTCATGGATCCGAATTAGCTGGACACTCAAGTGCGAACCAGGACAGTGGAGTGACCACAACTTCTG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 90 bp CTATATCAGCCATCCTGGTGGTTGTCTGGAGTAGTACTTCTGGGTTaGAATGGTTTGGCTTCCACTGGGTCCAGTCCTGGTTGTCTTCTG +
Preference number: 6 (lower is better)
Translates to: LYQPSWWLSGVVLLG*NGLASTGSSPGCLL
Trigger: CAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGTACTACTCCAGACAACCACCAGGATGGCTGATATAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS TCA 72 bp GTTCCGGGGTCCAATTTTCTCCATGAGCACTGGTGCTaGTTCTGTCTATATCAGCCATCCTGGTGGTTGTCT +
Preference number: 6 (lower is better)
Translates to: VPGSNFLHEHWC*FCLYQPSWWLS
Trigger: AGACAACCACCAGGATGGCTGATATAGACAGAATCAGCACCAGTGCTCATGGAGAAAATTGGACCCCGGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS TCA 72 bp AAAGGAGGCTGTGGTTCCGGGGTCCAATTTTCTCCATaGGCACTGGTGCTGATTCTGTCTATATCAGCCATC +
Preference number: 6 (lower is better)
Translates to: KGGCGSGVQFSP*ALVLILSISAI
Trigger: GATGGCTGATATAGACAGAATCAGCACCAGTGCTCATGGAGAAAATTGGACCCCGGAACCACAGCCTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS GCA 72 bp AGTAGTTGTATCTGTGGGAAGACTTCCACCTCTTCTTaGATCTTTAGCGCCGCTCTTAGTGGTGGCCAAGGT +
Preference number: 6 (lower is better)
Translates to: SSCICGKTSTSS*IFSAALSGGQG
Trigger: ACCTTGGCCACCACTAAGAGCGGCGCTAAAGATGCAAGAAGAGGTGGAAGTCTTCCCACAGATACAACTACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000111192.3
CDS CCA 72 bp CCAGTCCTGGTTGTCTTCTGTGCGGGCAGAAACCCGTaGAGTACTTGCAATGGTACTGGAGATAAAATCTTC +
Preference number: 6 (lower is better)
Translates to: PVLVVFCAGRNP*STCNGTGDKIF
Trigger: GAAGATTTTATCTCCAGTACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAACCAGGACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CAA 72 bp TGGTTGTCTGGAGTAGTACTTCTGGGTTTGAATGGTTaGGCTTCCACTGGGTCCAGTCCTGGTTGTCTTCTG +
Preference number: 6 (lower is better)
Translates to: WLSGVVLLGLNG*ASTGSSPGCLL
Trigger: CAGAAGACAACCAGGACTGGACCCAGTGGAAGCCAAACCATTCAAACCCAGAAGTACTACTCCAGACAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS CAA 90 bp CCATCACGGTTGACAATAGTTATGGTAACCGGTCCATCGAAGGAATaGGGTAGGTCTGTGACTGATGTACAGTCTTCTTCAGGAGGGGCT +
Preference number: 6 (lower is better)
Translates to: PSRLTIVMVTGPSKE*GRSVTDVQSSSGGA
Trigger: AGCCCCTCCTGAAGAAGACTGTACATCAGTCACAGACCTACCCAATTCCTTCGATGGACCGGTTACCATAACTATTGTCAACCGTGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS TCA 72 bp TTCCTCATTTGGCTCCCAGCCTGTTGGGTTGGTATTTaGCTCCGTACCAGGCATCTTCGTTGTTGTATGAAG +
Preference number: 6 (lower is better)
Translates to: FLIWLPACWVGI*LRTRHLRCCMK
Trigger: CTTCATACAACAACGAAGATGCCTGGTACGGAGTCAAATACCAACCCAACAGGCTGGGAGCCAAATGAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS GCA 72 bp ACTGTAGCGGCCATTTTTCTCCACATGGAATACACCTaGGTAGCGGCAGGTTACATTCAAATCGATCTGCTG +
Preference number: 6 (lower is better)
Translates to: TVAAIFLHMEYT*VAAGYIQIDLL
Trigger: CAGCAGATCGATTTGAATGTAACCTGCCGCTACGCAGGTGTATTCCATGTGGAGAAAAATGGCCGCTACAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp CCTGTTCAAGTCTTCCACCAAATGGGTATTTGGAGCTaGAGTAGGCTGAAGGGTTGTACTATGACTGGAGTC +
Preference number: 6 (lower is better)
Translates to: PVQVFHQMGIWS*SRLKGCTMTGV
Trigger: GACTCCAGTCATAGTACAACCCTTCAGCCTACTGCAGCTCCAAATACCCATTTGGTGGAAGACTTGAACAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111191.9
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp AGTAGTTGTATCTGTGGGAAGACTTCCACCTCTTCTTaGATCTTTAGCGCCGCTCTTAGTGCTAGATGGCAG +
Preference number: 6 (lower is better)
Translates to: SSCICGKTSTSS*IFSAALSARWQ
Trigger: CTGCCATCTAGCACTAAGAGCGGCGCTAAAGATGCAAGAAGAGGTGGAAGTCTTCCCACAGATACAACTACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 72 bp CATGTTTCAAAACCCTTGCTCAGGGCCAACTTCATTTaGTCCATGGTGGGTAAGGTACTGTTGAAAGCCTGG +
Preference number: 6 (lower is better)
Translates to: HVSKPLLRANFI*SMVGKVLLKAW
Trigger: CCAGGCTTTCAACAGTACCTTACCCACCATGGACCAAATGAAGTTGGCCCTGAGCAAGGGTTTTGAAACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp CCTTCTATGAACCCATACCTGCATGTTTCAAAACCCTaGCTCAGGGCCAACTTCATTTGGTCCATGGTGGGT +
Preference number: 6 (lower is better)
Translates to: PSMNPYLHVSKP*LRANFIWSMVG
Trigger: ACCCACCATGGACCAAATGAAGTTGGCCCTGAGCAAGGGTTTTGAAACATGCAGGTATGGGTTCATAGAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp AATAACCATGAAAACCAGTTCTGGGCTTCTTGCCTCTaGGGTGGTGTTTCAGGGGTGGTCATCAAGGCTGTA +
Preference number: 6 (lower is better)
Translates to: NNHENQFWASCL*GGVSGVVIKAV
Trigger: TACAGCCTTGATGACCACCCCTGAAACACCACCCAAGAGGCAAGAAGCCCAGAACTGGTTTTCATGGTTATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CAA 90 bp CCCAGCCTGTTGGGTTGGTATTTGACTCCGTACCAGGCATCTTCGTaGTTGTATGAAGATGACTCTTGGACTCTGATGGTTGAAATAACC +
Preference number: 6 (lower is better)
Translates to: PSLLGWYLTPYQASS*LYEDDSWTLMVEIT
Trigger: GGTTATTTCAACCATCAGAGTCCAAGAGTCATCTTCATACAACAACGAAGATGCCTGGTACGGAGTCAAATACCAACCCAACAGGCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS TCA 72 bp ACTCCTGTGTGGTTGGCTGCACAGATAGCGTTGGGATaGATCCTCGGAATTACCACATTTCCTTCTATGAAC +
Preference number: 6 (lower is better)
Translates to: TPVWLAAQIALG*ILGITTFPSMN
Trigger: GTTCATAGAAGGAAATGTGGTAATTCCGAGGATTCATCCCAACGCTATCTGTGCAGCCAACCACACAGGAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CCA 72 bp TTCATCCTGATACTCATGGTTATTGAAAGGAGGCTGTaGTTCCGGGGTCCAATTTTCTCCATGAGCACTGGT +
Preference number: 6 (lower is better)
Translates to: FILILMVIERRL*FRGPIFSMSTG
Trigger: ACCAGTGCTCATGGAGAAAATTGGACCCCGGAACCACAGCCTCCTTTCAATAACCATGAGTATCAGGATGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp TTTCCTCATTTGGCTCCCAGCCTGTTGGGTTGGTATTaGACTCCGTACCAGGCATCTTCGTTGTTGTATGAA +
Preference number: 6 (lower is better)
Translates to: FPHLAPSLLGWY*TPYQASSLLYE
Trigger: TTCATACAACAACGAAGATGCCTGGTACGGAGTCAAATACCAACCCAACAGGCTGGGAGCCAAATGAGGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CAA 90 bp GAAATCTGTCCAGGAAACATCCTCTTGACTCTGTGTTGTTATTCTTaGACTTGGATGGTTGTTGTGGGCCGAAGCAGTTGTCCCTTCTGT +
Preference number: 6 (lower is better)
Translates to: EICPGNILLTLCCYS*TWMVVVGRSSCPFC
Trigger: ACAGAAGGGACAACTGCTTCGGCCCACAACAACCATCCAAGTCAAAGAATAACAACACAGAGTCAAGAGGATGTTTCCTGGACAGATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS CAA 90 bp TTGGGTCGAAGAAATCTGTCCAGGAAACATCCTCTTGACTCTGTGTaGTTATTCTTTGACTTGGATGGTTGTTGTGGGCCGAAGCAGTTG +
Preference number: 6 (lower is better)
Translates to: LGRRNLSRKHPLDSV*LFFDLDGCCGPKQL
Trigger: CAACTGCTTCGGCCCACAACAACCATCCAAGTCAAAGAATAACAACACAGAGTCAAGAGGATGTTTCCTGGACAGATTTCTTCGACCCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS TCA 72 bp GGTGGAGCCGCTGCTGACATCGTCATCTATAATGTTTaGAGCATCGATGTCTTCTTGGTGTGTTCTATACTC +
Preference number: 6 (lower is better)
Translates to: GGAAADIVIYNV*SIDVFLVCSIL
Trigger: GAGTATAGAACACACCAAGAAGACATCGATGCTTCAAACATTATAGATGACGATGTCAGCAGCGGCTCCACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS TCA 72 bp AGAGAAGTTCTGAGAATGACTCTGTGGAGTTGTCACTaGAAGTGGTCCTGTCCTGTTCAAGTCTTCCACCAA +
Preference number: 6 (lower is better)
Translates to: REVLRMTLWSCH*KWSCPVQVFHQ
Trigger: TTGGTGGAAGACTTGAACAGGACAGGACCACTTTCAGTGACAACTCCACAGAGTCATTCTCAGAACTTCTCT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111191.9
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS GCA 72 bp GTTGTCTTCTGTGCGGGCAGAAACCCGTGGAGTACTTaGAATGGTACTGGAGATAAAATCTTCATCATCATC +
Preference number: 6 (lower is better)
Translates to: VVFCAGRNPWST*NGTGDKIFIII
Trigger: GATGATGATGAAGATTTTATCTCCAGTACCATTGCAAGTACTCCACGGGTTTCTGCCCGCACAGAAGACAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CCA 72 bp CTGATTCTGTCTATATCAGCCATCCTGGTGGTTGTCTaGAGTAGTACTTCTGGGTTTGAATGGTTTGGCTTC +
Preference number: 6 (lower is better)
Translates to: LILSISAILVVV*SSTSGFEWFGF
Trigger: GAAGCCAAACCATTCAAACCCAGAAGTACTACTCCAGACAACCACCAGGATGGCTGATATAGACAGAATCAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000005218.15
ENSMUST00000111198.9
CDS CAA 72 bp CCAGGAAACATCCTCTTGACTCTGTGTTGTTATTCTTaGACTTGGATGGTTGTTGTGGGCCGAAGCAGTTGT +
Preference number: 6 (lower is better)
Translates to: PGNILLTLCCYS*TWMVVVGRSSC
Trigger: ACAACTGCTTCGGCCCACAACAACCATCCAAGTCAAAGAATAACAACACAGAGTCAAGAGGATGTTTCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS CAA 72 bp TCTCGATCTCCTGGTAAGGAGCCATCAACATTAACGTaGGAGTCAGTAGCAAGAGTCACTTCAGTTTCTCCA +
Preference number: 6 (lower is better)
Translates to: SRSPGKEPSTLT*ESVARVTSVSP
Trigger: TGGAGAAACTGAAGTGACTCTTGCTACTGACTCCAACGTTAATGTTGATGGCTCCTTACCAGGAGATCGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 90 bp AGCCTGTTGGGTTGGTATTTGACTCCGTACCAGGCATCTTCGTTGTaGTATGAAGATGACTCTTGGACTCTGATGGTTGAAATAACCATG +
Preference number: 6 (lower is better)
Translates to: SLLGWYLTPYQASSL*YEDDSWTLMVEITM
Trigger: CATGGTTATTTCAACCATCAGAGTCCAAGAGTCATCTTCATACAACAACGAAGATGCCTGGTACGGAGTCAAATACCAACCCAACAGGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CAA 90 bp TATCCTTGCTTTCTGTTTGATGACCTTGTCCCATTGGATGTGAGATaGGGTCGAAGAAATCTGTCCAGGAAACATCCTCTTGACTCTGTG +
Preference number: 6 (lower is better)
Translates to: YPCFLFDDLVPLDVR*GRRNLSRKHPLDSV
Trigger: CACAGAGTCAAGAGGATGTTTCCTGGACAGATTTCTTCGACCCAATCTCACATCCAATGGGACAAGGTCATCAAACAGAAAGCAAGGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS CAA 72 bp GGTTGGTATTTGACTCCGTACCAGGCATCTTCGTTGTaGTATGAAGATGACTCTTGGACTCTGATGGTTGAA +
Preference number: 6 (lower is better)
Translates to: GWYLTPYQASSL*YEDDSWTLMVE
Trigger: TTCAACCATCAGAGTCCAAGAGTCATCTTCATACAACAACGAAGATGCCTGGTACGGAGTCAAATACCAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CAA 72 bp TTGGGTTGGTATTTGACTCCGTACCAGGCATCTTCGTaGTTGTATGAAGATGACTCTTGGACTCTGATGGTT +
Preference number: 6 (lower is better)
Translates to: LGWYLTPYQASS*LYEDDSWTLMV
Trigger: AACCATCAGAGTCCAAGAGTCATCTTCATACAACAACGAAGATGCCTGGTACGGAGTCAAATACCAACCCAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS TCA 72 bp ACTCGTTGTGGGCTCCTGAGTCTGAGTTGTGGACTGTaGATTACCAAACCAAGACCATATCCAATTATTTTG +
Preference number: 6 (lower is better)
Translates to: TRCGLLSLSCGL*ITKPRPYPIIL
Trigger: CAAAATAATTGGATATGGTCTTGGTTTGGTAATTCACAGTCCACAACTCAGACTCAGGAGCCCACAACGAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000005218.15
CDS CCA 72 bp TTCTGCTGTACTATTAGGAGTTGTGCTTGTAGCATGTaGGGTCTCCTCTTCATCCTGATACTCATGGTTATT +
Preference number: 6 (lower is better)
Translates to: FCCTIRSCACSM*GLLFILILMVI
Trigger: AATAACCATGAGTATCAGGATGAAGAGGAGACCCCACATGCTACAAGCACAACTCCTAATAGTACAGCAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp TTGACAATAGTTATGGTAACCGGTCCATCGAAGGAATaGGGTAGGTCTGTGACTGATGTACAGTCTTCTTCA +
Preference number: 6 (lower is better)
Translates to: LTIVMVTGPSKE*GRSVTDVQSSS
Trigger: TGAAGAAGACTGTACATCAGTCACAGACCTACCCAATTCCTTCGATGGACCGGTTACCATAACTATTGTCAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000099673.9
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9
CDS CAA 72 bp TTTCTGTTTGATGACCTTGTCCCATTGGATGTGAGATaGGGTCGAAGAAATCTGTCCAGGAAACATCCTCTT +
Preference number: 6 (lower is better)
Translates to: FLFDDLVPLDVR*GRRNLSRKHPL
Trigger: AAGAGGATGTTTCCTGGACAGATTTCTTCGACCCAATCTCACATCCAATGGGACAAGGTCATCAAACAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111198.9
CDS CAA 72 bp TGGGAAGAGAGTCCCATTTTCCATTGTGTCTGGGTATaGAAAGGTGTAGCCTTCTACAGAAGTAGTTGTATC +
Preference number: 6 (lower is better)
Translates to: WEESPIFHCVWV*KGVAFYRSSCI
Trigger: GATACAACTACTTCTGTAGAAGGCTACACCTTTCAATACCCAGACACAATGGAAAATGGGACTCTCTTCCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000005218.15
ENSMUST00000060516.14
ENSMUST00000111190.9
ENSMUST00000111191.9
ENSMUST00000111192.3
ENSMUST00000111194.8
ENSMUST00000111198.9