RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD40LG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031132

Ensembl transcript IDs: ENSMUST00000033466.2

Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GAGCTCTGTCATCTGTGTATTATGGCTTTGTCTTTTCTGGTTGTCTaGATCAGTGGGGTTGCTGTTTCAGATTGTAAGTTCTTAGGGAGC +
Preference number: 1 (lower is better)
Translates to: ELCHLCIMALSFLVV*ISGVAVSDCKFLGS
Trigger: GCTCCCTAAGAACTTACAATCTGAAACAGCAACCCCACTGATTCAGACAACCAGAAAAGACAAAGCCATAATACACAGATGACAGAGCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR GCA 90 bp AGTACACTGTCCATTGAACGACACACCCATAAAACAACAAAACTGTaGTCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTG +
Preference number: 1 (lower is better)
Translates to: STLSIERHTHKTTKL*SLVICCFIRALSSV
Trigger: CACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGAGCACAGTTTTGTTGTTTTATGGGTGTGTCGTTCAATGGACAGTGTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR-3UTR GCA 90 bp TGCCTGCCCTGTAATTCTCTTATTCCAGCTCTATGTGCCTTGGGGGTACATAATTGCCAGCATCAGCCCTaGTGCAGCCTAGGACAGCGC +
Preference number: 2 (lower is better)
Translates to: CLPCNSLIPALCALGVHNCQHQP*CSLGQR
Trigger: GCGCTGTCCTAGGCTGCAGCAGGGCTGATGCTGGCA...ATTATGTACCCCCAAGGCACATAGAGCTGGAATAAGAGAATTACAGGGCAGGCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR-3UTR TCA 90 bp AGGGAGCCCAGGTCAACCATAACAGATTGTGAGCTGAGGCTCACAGTTGCCCTTTCTTTTCTGGTTGTCTaGATCAGTGGGGTTGCTGTT +
Preference number: 2 (lower is better)
Translates to: REPRSTITDCELRLTVALSFLVV*ISGVAV
Trigger: AACAGCAACCCCACTGATTCAGACAACCAGAAAAGA...AAGGGCAACTGTGAGCCTCAGCTCACAATCTGTTATGGTTGACCTGGGCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR-3UTR GCA 90 bp CTCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATGGCTTCAGCATCAGCCCTGCTaGAGCCTAGGACAGCGCACT +
Preference number: 2 (lower is better)
Translates to: LISYLLFHQSSVICVLWLQHQPC*SLGQRT
Trigger: AGTGCGCTGTCCTAGGCTGCAGCAGGGCTGATGCTG...AAGCCATAATACACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR-3UTR CCA 90 bp CTCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATGGCTTCAGCTCTATGTGCCTTaGGGGTACATAATAAATAGT +
Preference number: 2 (lower is better)
Translates to: LISYLLFHQSSVICVLWLQLYVP*GYIINS
Trigger: ACTATTTATTATGTACCCCCAAGGCACATAGAGCTG...AAGCCATAATACACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR TCA 72 bp GGGCCGCAGGGAGCCCAGGTCAACCATAACAGATTGTaGGCTGAGGCTCACAGTTGCCCTTCTGCATCTTCC +
Preference number: 3 (lower is better)
Translates to: GPQGAQVNHNRL*AEAHSCPSASS
Trigger: GGAAGATGCAGAAGGGCAACTGTGAGCCTCAGCTCACAATCTGTTATGGTTGACCTGGGCTCCCTGCGGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR-3UTR CAA 90 bp GTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATGGCTTTGTCTTTAGGGAGCAGGGTCCCTaGGGATTTTTGCCTGCCCTG +
Preference number: 3 (lower is better)
Translates to: VICCFIRALSSVYYGFVFREQGP*GFLPAL
Trigger: CAGGGCAGGCAAAAATCCCAAGGGACCCTGCTCCCT...AAAGACAAAGCCATAATACACAGATGACAGAGCTCTGATGAAACAACAGATAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR-3UTR CAA 90 bp AGTTGCCCTTCTGCATCTTCCCTGGTAAGTCAAGTACACTGTCCATTGAACGACCTTTGTCTTTTCTGGTaGTCTGAATCAGTGGGGTTG +
Preference number: 3 (lower is better)
Translates to: SCPSASSLVSQVHCPLNDLCLFW*SESVGL
Trigger: CAACCCCACTGATTCAGACAACCAGAAAAGACAAAG...GTCGTTCAATGGACAGTGTACTTGACTTACCAGGGAAGATGCAGAAGGGCAACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR GCA 72 bp TGTAAGTTCTTAGGGAGCAGGGTCCCTTGGGATTTTTaGCTGCCCTGTAATTCTCTTATTCCAGCTCTATGT +
Preference number: 3 (lower is better)
Translates to: CKFLGSRVPWDF*LPCNSLIPALC
Trigger: ACATAGAGCTGGAATAAGAGAATTACAGGGCAGGCAAAAATCCCAAGGGACCCTGCTCCCTAAGAACTTACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR CCA 72 bp GTTTCAGATTGTAAGTTCTTAGGGAGCAGGGTCCCTTaGGATTTTTGCCTGCCCTGTAATTCTCTTATTCCA +
Preference number: 3 (lower is better)
Translates to: VSDCKFLGSRVP*DFCLPCNSLIP
Trigger: TGGAATAAGAGAATTACAGGGCAGGCAAAAATCCCAAGGGACCCTGCTCCCTAAGAACTTACAATCTGAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR-3UTR CAA 90 bp TCTTCCCTGGTAAGTCAAGTACACTGTCCATTGAACGACACACCCATAAAACAATCTGAATCAGTGGGGTaGCTGTTTCAGATTGTAAGT +
Preference number: 3 (lower is better)
Translates to: SSLVSQVHCPLNDTPIKQSESVG*LFQIVS
Trigger: ACTTACAATCTGAAACAGCAACCCCACTGATTCAGA...TTGTTTTATGGGTGTGTCGTTCAATGGACAGTGTACTTGACTTACCAGGGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR TCA 72 bp CATCTGTGTATTATGGCTTTGTCTTTTCTGGTTGTCTaGATCAGTGGGGTTGCTGTTTCAGATTGTAAGTTC +
Preference number: 3 (lower is better)
Translates to: HLCIMALSFLVV*ISGVAVSDCKF
Trigger: GAACTTACAATCTGAAACAGCAACCCCACTGATTCAGACAACCAGAAAAGACAAAGCCATAATACACAGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR GCA 72 bp TCCATTGAACGACACACCCATAAAACAACAAAACTGTaGTCATTAGTTATCTGTTGTTTCATCAGAGCTCTG +
Preference number: 3 (lower is better)
Translates to: SIERHTHKTTKL*SLVICCFIRAL
Trigger: CAGAGCTCTGATGAAACAACAGATAACTAATGAGCACAGTTTTGTTGTTTTATGGGTGTGTCGTTCAATGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR GCA 90 bp AGCAGGGTCCCTTGGGATTTTTGCCTGCCCTGTAATTCTCTTATTCCAGCTCTACGCTGGAAGTCCAGTTaGCACGGATCTGGGGGAAGG +
Preference number: 4 (lower is better)
Translates to: SRVPWDFCLPCNSLIPALRWKSS*HGSGGR
Trigger: CCTTCCCCCAGATCCGTGGCAACTGGACTTCCAGCG...TAGAGCTGGAATAAGAGAATTACAGGGCAGGCAAAAATCCCAAGGGACCCTGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
3UTR CAA 72 bp AATAGGCAGTTCAACACAGGGCAGGTCCTAACTGACTaGCTGTATAGGGAAGACTGCCAGCATCAGCCCTGC +
Preference number: 4 (lower is better)
Translates to: NRQFNTGQVLTD*LYREDCQHQPC
Trigger: GCAGGGCTGATGCTGGCAGTCTTCCCTATACAGCAAGTCAGTTAGGACCTGCCCTGTGTTGAACTGCCTATT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CCA 90 bp CCTAGGGTTATAAATAGGCAGTTCAACACAGGGCAGGTCCTAACTGACTTGCTGTGCTGCTCGCAAAGCTaGGAGGAACTGTGGGTATTT +
Preference number: 4 (lower is better)
Translates to: PRVINRQFNTGQVLTDLLCCSQS*EELWVF
Trigger: AAATACCCACAGTTCCTCCCAGCTTTGCGAGCAGCA...CAGCAAGTCAGTTAGGACCTGCCCTGTGTTGAACTGCCTATTTATAACCCTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR GCA 90 bp AGTTGCCCTTCTGCATCTTCCCTGGTAAGTCAAGTACACTGTCCATTGAACGACGCTTACAACGTGTGCTaGAATTTGAGGATCCTCATC +
Preference number: 4 (lower is better)
Translates to: SCPSASSLVSQVHCPLNDAYNVC*NLRILI
Trigger: GATGAGGATCCTCAAATTGCAGCACACGTTGTAAGC...GTCGTTCAATGGACAGTGTACTTGACTTACCAGGGAAGATGCAGAAGGGCAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CCA 90 bp AAAACTGTGCTCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTACAGTTGCCACGGATCTaGGGGAAGGTTGGCTGTATG +
Preference number: 4 (lower is better)
Translates to: KTVLISYLLFHQSSVICVQLPRI*GKVGCM
Trigger: CATACAGCCAACCTTCCCCCAGATCCGTGGCAACTG...TACACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGAGCACAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CCA 90 bp CTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATGGCTTTGTCTTTTCTGGGAGAAGCCAACTCTGTaGATCACTTGGCTTGCTTCA +
Preference number: 4 (lower is better)
Translates to: LLFHQSSVICVLWLCLFWEKPTL*ITWLAS
Trigger: TGAAGCAAGCCAAGTGATCCACAGAGTTGGCTTCTC...CCAGAAAAGACAAAGCCATAATACACAGATGACAGAGCTCTGATGAAACAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR TCA 90 bp CTGTGCTCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATACGTGTGCTGCAATTTaGGGATCCTCATCACCTCTT +
Preference number: 4 (lower is better)
Translates to: LCSLVICCFIRALSSVYYTCAAI*GSSSPL
Trigger: AAGAGGTGATGAGGATCCTCAAATTGCAGCACACGT...ATAATACACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGAGCACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR GCA 90 bp TCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATGGCTTTGTGGATCACTTGGCTTaGTTCAGTCACGTTGACAAA +
Preference number: 4 (lower is better)
Translates to: SLVICCFIRALSSVYYGFVDHLA*FSHVDK
Trigger: TTTGTCAACGTGACTGAAGCAAGCCAAGTGATCCAC...AAAGCCATAATACACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CCA 90 bp TCTTCCCTGGTAAGTCAAGTACACTGTCCATTGAACGACACACCCATAAAACAACCAAGTTGCTTTTCATaGTATAATATCCTTTCTTGG +
Preference number: 4 (lower is better)
Translates to: SSLVSQVHCPLNDTPIKQPSCFS*YNILSW
Trigger: CCAAGAAAGGATATTATACCATGAAAAGCAACTTGG...TTGTTTTATGGGTGTGTCGTTCAATGGACAGTGTACTTGACTTACCAGGGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR GCA 90 bp TCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATGGCTTTTCCTCATCACCTCTTTaGATTTCAAAGCTGTTTTCT +
Preference number: 4 (lower is better)
Translates to: SLVICCFIRALSSVYYGFSSSPL*ISKLFS
Trigger: AGAAAACAGCTTTGAAATGCAAAGAGGTGATGAGGA...AAAGCCATAATACACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CCA 90 bp AAAACTGTGCTCATTAGTTATCTGTTGTTTCATCAGAGCTCTGTCATCTGTGTAACAGATCCAATCATTTaGGTGATAAGGAAAACAGTA +
Preference number: 4 (lower is better)
Translates to: KTVLISYLLFHQSSVICVTDPII*VIRKTV
Trigger: TACTGTTTTCCTTATCACCCAAATGATTGGATCTGT...TACACAGATGACAGAGCTCTGATGAAACAACAGATAACTAATGAGCACAGTTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CCA 90 bp TCTCTCAGATCCACTGCTGGGCTTCAGCCAGAGGCCGACGATGAATaGGCGTTGACTCGAAGGCTCCCGATTAGAGCAGAAGGTGACTTG +
Preference number: 5 (lower is better)
Translates to: SLRSTAGLQPEADDE*ALTRRLPIRAEGDL
Trigger: CAAGTCACCTTCTGCTCTAATCGGGAGCCTTCGAGTCAACGCCCATTCATCGTCGGCCTCTGGCTGAAGCCCAGCAGTGGATCTGAGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS TCA 90 bp ACTGCTGCTCGCAAAGCTGGGAGGAACTGTGGGTATTTGCCGCCTTaGGTAAGATTCTCTCAGATCCACTGCTGGGCTTCAGCCAGAGGC +
Preference number: 5 (lower is better)
Translates to: TAARKAGRNCGYLPP*VRFSQIHCWASARG
Trigger: GCCTCTGGCTGAAGCCCAGCAGTGGATCTGAGAGAATCTTACTCAAGGCGGCAAATACCCACAGTTCCTCCCAGCTTTGCGAGCAGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CAA 90 bp CAGTTGCCCTTCTGCATCTTCCCTGGTAAGTCAAGTACACTGTCCATTGAACGATCGCTGGAAGTCCAGTaGCCACGGATCTGGGGGAAG +
Preference number: 5 (lower is better)
Translates to: QLPFCIFPGKSSTLSIERSLEVQ*PRIWGK
Trigger: CTTCCCCCAGATCCGTGGCAACTGGACTTCCAGCGA...TCGTTCAATGGACAGTGTACTTGACTTACCAGGGAAGATGCAGAAGGGCAACTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS TCA 90 bp ACAAACACAGAAGCACCAGCTTGTAATTCAAACACTCCGCCCAAGTaGACAGACTGCTGCTCGCAAAGCTGGGAGGAACTGTGGGTATTT +
Preference number: 5 (lower is better)
Translates to: TNTEAPACNSNTPPK*TDCCSQSWEELWVF
Trigger: AAATACCCACAGTTCCTCCCAGCTTTGCGAGCAGCAGTCTGTTCACTTGGGCGGAGTGTTTGAATTACAAGCTGGTGCTTCTGTGTTTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CCA 90 bp AATATCCTTTCTTGGCCCACTGTAGAACGGATGCTGCATTACTGTTaGCTTCGCTTACAACGTGTGCTGCAATTTGAGGATCCTCATCAC +
Preference number: 5 (lower is better)
Translates to: NILSWPTVERMLHYC*LRLQRVLQFEDPHH
Trigger: GTGATGAGGATCCTCAAATTGCAGCACACGTTGTAAGCGAAGCCAACAGTAATGCAGCATCCGTTCTACAGTGGGCCAAGAAAGGATATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CAA 90 bp TCTTCCCTGGTAAGTCAAGTACACTGTCCATTGAACGACACACCCATAAAACAAGGATCTGGGGGAAGGTaGGCTGTATGTTTCTATCAT +
Preference number: 5 (lower is better)
Translates to: SSLVSQVHCPLNDTPIKQGSGGR*AVCFYH
Trigger: ATGATAGAAACATACAGCCAACCTTCCCCCAGATCC...TTGTTTTATGGGTGTGTCGTTCAATGGACAGTGTACTTGACTTACCAGGGAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CAA 90 bp GTTCTCCATGAGGAGGATCCTAGGGTTATAAATAGGCAGTTCAACACAGGGCAGCACAGATCCAATCATTaGGGTGATAAGGAAAACAGT +
Preference number: 5 (lower is better)
Translates to: VLHEEDPRVINRQFNTGQHRSNH*GDKENS
Trigger: ACTGTTTTCCTTATCACCCAAATGATTGGATCTGTG...CTGCCCTGTGTTGAACTGCCTATTTATAACCCTAGGATCCTCCTCATGGAGAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CCA 90 bp CCGTCAGCTGTTTCCCATTTTCAAGCATTACCAAGTTGCTTTTCATaGTATAATATCCTTTCTTGGCCCACTGTAGAACGGATGCTGCAT +
Preference number: 5 (lower is better)
Translates to: PSAVSHFQALPSCFS*YNILSWPTVERMLH
Trigger: ATGCAGCATCCGTTCTACAGTGGGCCAAGAAAGGATATTATACCATGAAAAGCAACTTGGTAATGCTTGAAAATGGGAAACAGCTGACGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CAA 90 bp CTGTTGTTTCATCAGAGCTCTGTCATCTGTGTATTATGGCTTTGTCTTTTCTGGCTTGCTTCAGTCACGTaGACAAACACAGAAGCACCA +
Preference number: 5 (lower is better)
Translates to: LLFHQSSVICVLWLCLFWLASVT*TNTEAP
Trigger: TGGTGCTTCTGTGTTTGTCAACGTGACTGAAGCAAG...CCAGAAAAGACAAAGCCATAATACACAGATGACAGAGCTCTGATGAAACAACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS TCA 90 bp GATGCTGCATTACTGTTGGCTTCGCTTACAACGTGTGCTGCAATTTaGGGATCCTCATCACCTCTTTGCATTTCAAAGCTGTTTTCTTTT +
Preference number: 5 (lower is better)
Translates to: DAALLLASLTTCAAI*GSSSPLCISKLFSF
Trigger: AAAAGAAAACAGCTTTGAAATGCAAAGAGGTGATGAGGATCCTCAAATTGCAGCACACGTTGTAAGCGAAGCCAACAGTAATGCAGCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CAA 90 bp CAAGTACACTGTCCATTGAACGACACACCCATAAAACAACAAAACTGTGCTCATTGGGTATTTGCCGCCTaGAGTAAGATTCTCTCAGAT +
Preference number: 5 (lower is better)
Translates to: QVHCPLNDTPIKQQNCAHWVFAA*SKILSD
Trigger: ATCTGAGAGAATCTTACTCAAGGCGGCAAATACCCA...ATGAGCACAGTTTTGTTGTTTTATGGGTGTGTCGTTCAATGGACAGTGTACTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CCA 90 bp TTTCAAGCATTACCAAGTTGCTTTTCATGGTATAATATCCTTTCTTaGCCCACTGTAGAACGGATGCTGCATTACTGTTGGCTTCGCTTA +
Preference number: 5 (lower is better)
Translates to: FQALPSCFSWYNILS*PTVERMLHYCWLRL
Trigger: TAAGCGAAGCCAACAGTAATGCAGCATCCGTTCTACAGTGGGCCAAGAAAGGATATTATACCATGAAAAGCAACTTGGTAATGCTTGAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS-3UTR CAA 90 bp CAAGTACACTGTCCATTGAACGACACACCCATAAAACAACAAAACTGTGCTCATATCCTCATCACCTCTTaGCATTTCAAAGCTGTTTTC +
Preference number: 5 (lower is better)
Translates to: QVHCPLNDTPIKQQNCAHILITS*HFKAVF
Trigger: GAAAACAGCTTTGAAATGCAAAGAGGTGATGAGGAT...ATGAGCACAGTTTTGTTGTTTTATGGGTGTGTCGTTCAATGGACAGTGTACTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CAA 72 bp GCTGGGCTTCAGCCAGAGGCCGACGATGAATGGGCGTaGACTCGAAGGCTCCCGATTAGAGCAGAAGGTGAC +
Preference number: 6 (lower is better)
Translates to: AGLQPEADDEWA*TRRLPIRAEGD
Trigger: GTCACCTTCTGCTCTAATCGGGAGCCTTCGAGTCAACGCCCATTCATCGTCGGCCTCTGGCTGAAGCCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS TCA 72 bp CTGGGCTTCAGCCAGAGGCCGACGATGAATGGGCGTTaGCTCGAAGGCTCCCGATTAGAGCAGAAGGTGACT +
Preference number: 6 (lower is better)
Translates to: LGFSQRPTMNGR*LEGSRLEQKVT
Trigger: AGTCACCTTCTGCTCTAATCGGGAGCCTTCGAGTCAACGCCCATTCATCGTCGGCCTCTGGCTGAAGCCCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CCA 72 bp TCCACTGCTGGGCTTCAGCCAGAGGCCGACGATGAATaGGCGTTGACTCGAAGGCTCCCGATTAGAGCAGAA +
Preference number: 6 (lower is better)
Translates to: STAGLQPEADDE*ALTRRLPIRAE
Trigger: TTCTGCTCTAATCGGGAGCCTTCGAGTCAACGCCCATTCATCGTCGGCCTCTGGCTGAAGCCCAGCAGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CAA 90 bp AGATCCACTGCTGGGCTTCAGCCAGAGGCCGACGATGAATGGGCGTaGACTCGAAGGCTCCCGATTAGAGCAGAAGGTGACTTGAGTGTA +
Preference number: 6 (lower is better)
Translates to: RSTAGLQPEADDEWA*TRRLPIRAEGDLSV
Trigger: TACACTCAAGTCACCTTCTGCTCTAATCGGGAGCCTTCGAGTCAACGCCCATTCATCGTCGGCCTCTGGCTGAAGCCCAGCAGTGGATCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CAA 90 bp GACTGCTGCTCGCAAAGCTGGGAGGAACTGTGGGTATTTGCCGCCTaGAGTAAGATTCTCTCAGATCCACTGCTGGGCTTCAGCCAGAGG +
Preference number: 6 (lower is better)
Translates to: DCCSQSWEELWVFAA*SKILSDPLLGFSQR
Trigger: CCTCTGGCTGAAGCCCAGCAGTGGATCTGAGAGAATCTTACTCAAGGCGGCAAATACCCACAGTTCCTCCCAGCTTTGCGAGCAGCAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CAA 72 bp TCGCAAAGCTGGGAGGAACTGTGGGTATTTGCCGCCTaGAGTAAGATTCTCTCAGATCCACTGCTGGGCTTC +
Preference number: 6 (lower is better)
Translates to: SQSWEELWVFAA*SKILSDPLLGF
Trigger: GAAGCCCAGCAGTGGATCTGAGAGAATCTTACTCAAGGCGGCAAATACCCACAGTTCCTCCCAGCTTTGCGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS GCA 72 bp GGATGCTGCATTACTGTTGGCTTCGCTTACAACGTGTaGTGCAATTTGAGGATCCTCATCACCTCTTTGCAT +
Preference number: 6 (lower is better)
Translates to: GCCITVGFAYNV*CNLRILITSLH
Trigger: ATGCAAAGAGGTGATGAGGATCCTCAAATTGCAGCACACGTTGTAAGCGAAGCCAACAGTAATGCAGCATCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS GCA 72 bp TGCTGCATTACTGTTGGCTTCGCTTACAACGTGTGCTaGAATTTGAGGATCCTCATCACCTCTTTGCATTTC +
Preference number: 6 (lower is better)
Translates to: CCITVGFAYNVC*NLRILITSLHF
Trigger: GAAATGCAAAGAGGTGATGAGGATCCTCAAATTGCAGCACACGTTGTAAGCGAAGCCAACAGTAATGCAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS TCA 72 bp CAACTCTGTGGATCACTTGGCTTGCTTCAGTCACGTTaGCAAACACAGAAGCACCAGCTTGTAATTCAAACA +
Preference number: 6 (lower is better)
Translates to: QLCGSLGLLQSR*QTQKHQLVIQT
Trigger: TGTTTGAATTACAAGCTGGTGCTTCTGTGTTTGTCAACGTGACTGAAGCAAGCCAAGTGATCCACAGAGTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS CAA 72 bp ATTACTGTTGGCTTCGCTTACAACGTGTGCTGCAATTaGAGGATCCTCATCACCTCTTTGCATTTCAAAGCT +
Preference number: 6 (lower is better)
Translates to: ITVGFAYNVCCN*RILITSLHFKA
Trigger: AGCTTTGAAATGCAAAGAGGTGATGAGGATCCTCAAATTGCAGCACACGTTGTAAGCGAAGCCAACAGTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2
CDS TCA 72 bp AGGTTTACTTCCTCTTCGACCTTATCCAATCTTCTATaGAGATACACAGCAAAAAGCACAGATCCAATCATT +
Preference number: 6 (lower is better)
Translates to: RFTSSSTLSNLL*RYTAKSTDPII
Trigger: AATGATTGGATCTGTGCTTTTTGCTGTGTATCTTCATAGAAGATTGGATAAGGTCGAAGAGGAAGTAAACCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000033466.2