RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for CD40 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000017652

Ensembl transcript IDs: ENSMUST00000017799.12, ENSMUST00000073707.9, ENSMUST00000081310.11, ENSMUST00000140951.8, ENSMUST00000154443.8, ENSMUST00000184221.2

Found 120 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCCTGTGTaGCAGGCTGACACCCGTGCAGCGTCTCCTGCACTGGAGCAGCGG +
Preference number: 1 (lower is better)
Translates to: AAPALRCDSLYHPPV*QADTRAASPALEQR
Trigger: CCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR GCA 90 bp CAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCTTTACCATCCTCCTGTGTGACAGGC +
Preference number: 1 (lower is better)
Translates to: QTRGLKAMLSVTCRS*TEMRLSLPSSCVTG
Trigger: GCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR GCA 90 bp GCCTCCAAAGCAGTTCCAGGGTTCAGACCAGGGGCCTCAAGGCTATaGTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTT +
Preference number: 1 (lower is better)
Translates to: ASKAVPGFRPGASRL*CLSPAAPALRCDSL
Trigger: AAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTGAACCCTGGAACTGCTTTGGAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR CCA 90 bp ATCCTCCTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACCGGGATAATCTTCCATCTCCTGGGG +
Preference number: 1 (lower is better)
Translates to: ILLCDRLTPVQRLLH*SSGVMTGIIFHLLG
Trigger: CCCCAGGAGATGGAAGATTATCCCGGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR TCA 90 bp CAGGGGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACCATCCTCCTGTGTGACAGGCTGACA +
Preference number: 1 (lower is better)
Translates to: QGPQGYAVCHLPLLH*DATLFTILLCDRLT
Trigger: TGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR GCA 90 bp TCCAGGGTTCAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTaGCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCCTGT +
Preference number: 1 (lower is better)
Translates to: SRVQTRGLKAMLSVT*RSCTEMRLSLPSSC
Trigger: ACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTGAACCCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR CCA 90 bp CAGTGGCTTGTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTaGCCATCGTGGAGGTACTGTTTGTCACTGCACGTAACACACTGC +
Preference number: 1 (lower is better)
Translates to: QWLVSRLPGWHKSQH*PSWRYCLSLHVTHC
Trigger: GCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
3UTR TCA 90 bp CACCCTAGCTGTCTGGAAGTCAGCTTCAGCCTAGCAGCCTTCAGATaGAGATATAGAACTCTCAGGTCCTCCTGCACCATGCCTGCCTGG +
Preference number: 1 (lower is better)
Translates to: HPSCLEVSFSLAAFR*RYRTLRSSCTMPAW
Trigger: CCAGGCAGGCATGGTGCAGGAGGACCTGAGAGTTCTATATCTTCATCTGAAGGCTGCTAGGCTGAAGCTGACTTCCAGACAGCTAGGGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR GCA 90 bp CAGCCTTCAGATGAAGATATAGAACTCTCAGGTCCTCCTGCACCATaGCTGCCTGGATGCTGCCATGTTCCTGCCTTGAGGATAATGGAC +
Preference number: 1 (lower is better)
Translates to: QPSDEDIELSGPPAP*LPGCCHVPALRIMD
Trigger: GTCCATTATCCTCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGACCTGAGAGTTCTATATCTTCATCTGAAGGCTG
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR TCA 90 bp TGCCTGCCTGGATGCTGCCATGTTCCTGCCTTGAGGATAATGGACTaGACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTT +
Preference number: 1 (lower is better)
Translates to: CLPGCCHVPALRIMD*TSEPVSQPQLNVVL
Trigger: AAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCCTCAAGGCAGGAACATGGCAGCATCCAGGCAGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR TCA 90 bp CCTCCATCCTTAAAAAGCAAGTTGAGAAATGATAGGGGGCAGGCATaGGAGTTAGCTGCACTGGGCTCTGTCTTGGCTCATCTCAAACTT +
Preference number: 1 (lower is better)
Translates to: PPSLKSKLRNDRGQA*ELAALGSVLAHLKL
Trigger: AAGTTTGAGATGAGCCAAGACAGAGCCCAGTGCAGCTAACTCTCATGCCTGCCCCCTATCATTTCTCAACTTGCTTTTTAAGGATGGAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR GCA 90 bp TTTCTACAATACACCACCACATCCATTTTAGGATATGTGCACATGTaGACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAA +
Preference number: 1 (lower is better)
Translates to: FLQYTTTSILGYVHM*THGVHYHRAHMEVK
Trigger: TTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATATCCTAAAATGGATGTGGTGGTGTATTGTAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR-3UTR GCA 90 bp AAGGCTAGCCTTGAACTCCTAGTCCTCTTCCTCCTGAGTGCTAGGGTTACAGGCACTGTGGACCCCCGATaGCCGAGCTCTCCCTCCATC +
Preference number: 2 (lower is better)
Translates to: KASLELLVLFLLSARVTGTVDPR*PSSPSI
Trigger: GATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGT...GCCTGTAACCCTAGCACTCAGGAGGAAGAGGACTAGGAGTTCAAGGCTAGCCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR CAA 90 bp AGTCACATGGGTGGCATTGGGTCTTCTCAAGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGGCCAT +
Preference number: 2 (lower is better)
Translates to: SHMGGIGSSQELCSG*SVGFLAGTNHSTGH
Trigger: ATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCACCCATGTGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
3UTR-3UTR GCA 90 bp TGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATACTGTGGACCCCCGATaGCCGAGCTCTCCCTCCATC +
Preference number: 2 (lower is better)
Translates to: CTCAHTGYITTEHTWRSNTVDPR*PSSPSI
Trigger: GATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGT...ATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR-3UTR CCA 90 bp TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCGCAGCAAGACGACTCTaGGTCCTGCACTGCTGCACT +
Preference number: 2 (lower is better)
Translates to: YVHMCTHGVHYHRAHMEVAARRL*VLHCCT
Trigger: AGTGCAGCAGTGCAGGACCCAGAGTCGTCTTGCTGC...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR-3UTR CCA 90 bp TGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAGCAGCAAGACGACTCTaGGTCCTGCACTGCTGCACT +
Preference number: 2 (lower is better)
Translates to: CAHVHTRGTLPQSTHGGQAARRL*VLHCCT
Trigger: AGTGCAGCAGTGCAGGACCCAGAGTCGTCTTGCTGC...TTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR-3UTR TCA 90 bp TGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAGGACTCCTGTGTCCATaGCTCCTTACAGTGAACGCC +
Preference number: 2 (lower is better)
Translates to: CAHVHTRGTLPQSTHGGQGLLCP*LLTVNA
Trigger: GGCGTTCACTGTAAGGAGTCATGGACACAGGAGTCC...TTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR-3UTR TCA 90 bp GGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCGGACTCCTGTGTCCATaGCTCCTTACAGTGAACGCC +
Preference number: 2 (lower is better)
Translates to: GSKSGNRVWAASSFTHKSGLLCP*LLTVNA
Trigger: GGCGTTCACTGTAAGGAGTCATGGACACAGGAGTCC...GCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR-3UTR CCA 90 bp CTCTTTACCATCCTCCTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACGATCTCATTATCCTTTaGTTTCTTGACCACCTTTTC +
Preference number: 2 (lower is better)
Translates to: LFTILLCDRLTPVQRLLHDLIIL*FLDHLF
Trigger: GAAAAGGTGGTCAAGAAACCAAAGGATAATGAGATC...GTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR-3UTR TCA 90 bp TCTCCTGCACTGGAGCAGCGGTGTTATGACCGGGATAATCTTCCATCTCCTGGGTATCCTTTGGTTTCTTaGCCACCTTTTCTAGTGAGA +
Preference number: 2 (lower is better)
Translates to: SPALEQRCYDRDNLPSPGYPLVS*PPFLVR
Trigger: TCTCACTAGAAAAGGTGGTCAAGAAACCAAAGGATA...CCCAGGAGATGGAAGATTATCCCGGTCATAACACCGCTGCTCCAGTGCAGGAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR CAA 90 bp ATAGCTAGACAGAAGAGACATAGGTGGGGCTTAGTATTCCTGGGCTaGGCGTTAGAAGAGAACCAAGAGAGAGAAGAGGTGAATGGAGGA +
Preference number: 2 (lower is better)
Translates to: IARQKRHRWGLVFLG*ALEENQEREEVNGG
Trigger: TCCTCCATTCACCTCTTCTCTCTCTTGGTTCTCTTCTAACGCCAAGCCCAGGAATACTAAGCCCCACCTATGTCTCTTCTGTCTAGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR-3UTR GCA 90 bp CCACTGTTGAGGTTTGATCTTGCTCTGTATTGTAATGGGTTTGTGGCCCCAAGATACAGGGTAGGCAGGTaGCCAGTTCTTGTGCTGTTT +
Preference number: 2 (lower is better)
Translates to: PLLRFDLALYCNGFVAPRYRVGR*PVLVLF
Trigger: AAACAGCACAAGAACTGGGCACCTGCCTACCCTGTA...TCTTGGGGCCACAAACCCATTACAATACAGAGCAAGATCAAACCTCAACAGTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR-3UTR CCA 90 bp GTGTCTTTTATTCAAGAACTAAATGGTAACACACAGGTAGAAACCCCAGGGCGGACAACCCTCTGGATTTaGTTCTCTCCCTTTTACCAT +
Preference number: 2 (lower is better)
Translates to: VSFIQELNGNTQVETPGRTTLWI*FSPFYH
Trigger: ATGGTAAAAGGGAGAGAACCAAATCCAGAGGGTTGT...CCGCCCTGGGGTTTCTACCTGTGTGTTACCATTTAGTTCTTGAATAAAAGACAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR-3UTR CAA 90 bp CTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCCCATCTCCTGGGGATCTaGCCGTCGAGCCGCAGGGGG +
Preference number: 3 (lower is better)
Translates to: LSVTCRSCTEMRLSLPSSHLLGI*PSSRRG
Trigger: CCCCCTGCGGCTCGACGGCAAGATCCCCAGGAGATG...GGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR GCA 72 bp TCAAAGGTCAGCAAGCAGTCCTCAGAGCCAGGCCCCTaGTCCCGAGCCGAGCCATCGCCTCCAAAGCAGTTC +
Preference number: 3 (lower is better)
Translates to: SKVSKQSSEPGP*SRAEPSPPKQF
Trigger: GAACTGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTGCTGACCTTTGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
3UTR TCA 72 bp ATGCGACTCTCTTTACCATCCTCCTGTGTGACAGGCTaGCACCCGTGCAGCGTCTCCTGCACTGGAGCAGCG +
Preference number: 3 (lower is better)
Translates to: MRLSLPSSCVTG*HPCSVSCTGAA
Trigger: CGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR TCA 72 bp GCACTGAGATGCGACTCTCTTTACCATCCTCCTGTGTaGCAGGCTGACACCCGTGCAGCGTCTCCTGCACTG +
Preference number: 3 (lower is better)
Translates to: ALRCDSLYHPPV*QADTRAASPAL
Trigger: CAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR GCA 72 bp CAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTaGCGCTCCTGCACTGAGATGCGACTCTCTTTACCA +
Preference number: 3 (lower is better)
Translates to: QTRGLKAMLSVT*RSCTEMRLSLP
Trigger: TGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR CCA 72 bp AGAGCTGTGCAGTGGCTTGTCAGTCGGCTTCCTGGCTaGCACAAATCACAGCACTGGCCATCGTGGAGGTAC +
Preference number: 3 (lower is better)
Translates to: RAVQWLVSRLPG*HKSQHWPSWRY
Trigger: GTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
3UTR CCA 72 bp CTCAAGAGCTGTGCAGTGGCTTGTCAGTCGGCTTCCTaGCTGGCACAAATCACAGCACTGGCCATCGTGGAG +
Preference number: 3 (lower is better)
Translates to: LKSCAVACQSAS*LAQITALAIVE
Trigger: CTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
3UTR GCA 72 bp GGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCTTTACCATCCTCCTGT +
Preference number: 3 (lower is better)
Translates to: GLKAMLSVTCRS*TEMRLSLPSSC
Trigger: ACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR CCA 72 bp TGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACCGGGATAATCTTCCAT +
Preference number: 3 (lower is better)
Translates to: CDRLTPVQRLLH*SSGVMTGIIFH
Trigger: ATGGAAGATTATCCCGGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR TCA 72 bp CAAGGCTATGCTGTCTGTCACCTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACCATCCTCCTGTGTGAC +
Preference number: 3 (lower is better)
Translates to: QGYAVCHLPLLH*DATLFTILLCD
Trigger: GTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
3UTR CCA 72 bp GTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTaGCCATCGTGGAGGTACTGTTTGTCACTGCACGTA +
Preference number: 3 (lower is better)
Translates to: VSRLPGWHKSQH*PSWRYCLSLHV
Trigger: TACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
3UTR GCA 72 bp CTGCTGCACTTGGTAGGTATCACTGTGGACCCCCGATaGCCGAGCTCTCCCTCCATCCTTAAAAAGCAAGTT +
Preference number: 3 (lower is better)
Translates to: LLHLVGITVDPR*PSSPSILKKQV
Trigger: AACTTGCTTTTTAAGGATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR CCA 72 bp CTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTaGAGGTACTGTTTGTCACTGCACGTAACACACTGC +
Preference number: 3 (lower is better)
Translates to: LPGWHKSQHWPS*RYCLSLHVTHC
Trigger: GCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
3UTR TCA 72 bp GTGGACAGTGCACACATGATACACATATGCCCTGTGTaGGGGCTGGAAACTAAACCCAGAGCCTTCGCAGGA +
Preference number: 3 (lower is better)
Translates to: VDSAHMIHICPV*GLETKPRAFAG
Trigger: TCCTGCGAAGGCTCTGGGTTTAGTTTCCAGCCCTCACACAGGGCATATGTGTATCATGTGTGCACTGTCCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR CCA 72 bp TATAGAACTCTCAGGTCCTCCTGCACCATGCCTGCCTaGATGCTGCCATGTTCCTGCCTTGAGGATAATGGA +
Preference number: 3 (lower is better)
Translates to: YRTLRSSCTMPA*MLPCSCLEDNG
Trigger: TCCATTATCCTCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGACCTGAGAGTTCTATA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR-3UTR CAA 90 bp ACCATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCGCACTGGGCTCTGTCTaGGCTCATCTCAAACTTCAA +
Preference number: 3 (lower is better)
Translates to: TMKSQGSKSGNRVWAASSALGSV*AHLKLQ
Trigger: TTGAAGTTTGAGATGAGCCAAGACAGAGCCCAGTGC...GGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR CCA 72 bp TGCCAGCAGCCAATAGCTAGACAGAAGAGACATAGGTaGGGCTTAGTATTCCTGGGCTTGGCGTTAGAAGAG +
Preference number: 3 (lower is better)
Translates to: CQQPIARQKRHR*GLVFLGLALEE
Trigger: CTCTTCTAACGCCAAGCCCAGGAATACTAAGCCCCACCTATGTCTCTTCTGTCTAGCTATTGGCTGCTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR TCA 72 bp TGTCTGGAAGTCAGCTTCAGCCTAGCAGCCTTCAGATaGAGATATAGAACTCTCAGGTCCTCCTGCACCATG +
Preference number: 3 (lower is better)
Translates to: CLEVSFSLAAFR*RYRTLRSSCTM
Trigger: CATGGTGCAGGAGGACCTGAGAGTTCTATATCTTCATCTGAAGGCTGCTAGGCTGAAGCTGACTTCCAGACA
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR-3UTR CAA 90 bp GGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCGCACTGGGCTCTGTCTaGGCTCATCTCAAACTTCAA +
Preference number: 3 (lower is better)
Translates to: GSKSGNRVWAASSFTHKSALGSV*AHLKLQ
Trigger: TTGAAGTTTGAGATGAGCCAAGACAGAGCCCAGTGC...GCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR TCA 72 bp GGGGTACATTACCACAGAGCACACATGGAGGTCAAATaGCAACCCTCTGGATTTGGTTCTCTCCCTTTTACC +
Preference number: 3 (lower is better)
Translates to: GVHYHRAHMEVK*QPSGFGSLPFT
Trigger: GGTAAAAGGGAGAGAACCAAATCCAGAGGGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR TCA 72 bp TTAAAAAGCAAGTTGAGAAATGATAGGGGGCAGGCATaGGAGTTAGCTGCACTGGGCTCTGTCTTGGCTCAT +
Preference number: 3 (lower is better)
Translates to: LKSKLRNDRGQA*ELAALGSVLAH
Trigger: ATGAGCCAAGACAGAGCCCAGTGCAGCTAACTCTCATGCCTGCCCCCTATCATTTCTCAACTTGCTTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR TCA 72 bp CTCCTGAGTGCTAGGGTTACAGGCATGCACCACTGTTaGGGTTTGATCTTGCTCTGTATTGTAATGGGTTTG +
Preference number: 3 (lower is better)
Translates to: LLSARVTGMHHC*GLILLCIVMGL
Trigger: CAAACCCATTACAATACAGAGCAAGATCAAACCTCAACAGTGGTGCATGCCTGTAACCCTAGCACTCAGGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR GCA 72 bp TACACCACCACATCCATTTTAGGATATGTGCACATGTaGACACACGGGGTACATTACCACAGAGCACACATG +
Preference number: 3 (lower is better)
Translates to: YTTTSILGYVHM*THGVHYHRAHM
Trigger: CATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATATCCTAAAATGGATGTGGTGGTGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR CCA 72 bp ATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTaGGCAGCAAGCTCCTTTACTCACAAAAGCCATCTT +
Preference number: 3 (lower is better)
Translates to: MKSQGSKSGNRV*AASSFTHKSHL
Trigger: AAGATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR GCA 72 bp ATATTATGTGTACAAGTGTTCCACCTGTGTGGACAGTaGACACATGATACACATATGCCCTGTGTGAGGGCT +
Preference number: 3 (lower is better)
Translates to: ILCVQVFHLCGQ*THDTHMPCVRA
Trigger: AGCCCTCACACAGGGCATATGTGTATCATGTGTGCACTGTCCACACAGGTGGAACACTTGTACACATAATAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR GCA 72 bp ATCTCGCTAGACCACTGTCAAAGTTGGGATTTTCAATaGTTTGTTTTACCCACACAGGCATTCATGGTATCT +
Preference number: 3 (lower is better)
Translates to: ISLDHCQSWDFQ*FVLPTQAFMVS
Trigger: AGATACCATGAATGCCTGTGTGGGTAAAACAAAGCATTGAAAATCCCAACTTTGACAGTGGTCTAGCGAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR-3UTR CAA 90 bp ATTTCTACAATACACCACCACATCCATTTTAGGATATGTGCACATGTGCACACAGCCATCTTACCTGCCTaGGAATGTGTTTTAAAAGCT +
Preference number: 3 (lower is better)
Translates to: ISTIHHHIHFRICAHVHTAILPA*ECVLKA
Trigger: AGCTTTTAAAACACATTCCAAGGCAGGTAAGATGGC...TGTGTGCACATGTGCACATATCCTAAAATGGATGTGGTGGTGTATTGTAGAAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR TCA 90 bp CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAACTGGTTCGACAGGGCTaGACCCTCCCTCCCTTTCCT +
Preference number: 4 (lower is better)
Translates to: QAVLRARPLLPSRAIASKLVRQG*TLPPFP
Trigger: AGGAAAGGGAGGGAGGGTTCAGCCCTGTCGAACCAG...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS-3UTR GCA 90 bp GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCAGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCT +
Preference number: 4 (lower is better)
Translates to: AVLRARPLLPSRAIASKAVTCRS*TEMRLS
Trigger: AGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGAC...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp GCAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAGGAGAAGAAGCCGACTaGGCAGGGATGACAGACGGT +
Preference number: 4 (lower is better)
Translates to: ASSPQSQAPAPEPSHRLQGEEAD*AGMTDG
Trigger: ACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCC...TTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS-3UTR TCA 90 bp CTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACTGGAGCAGCGGTGTTCCGACTGGGCAGGGATaGCAGACGGTATCAGTGGTC +
Preference number: 4 (lower is better)
Translates to: LCDRLTPVQRLLHWSSGVPTGQG*QTVSVV
Trigger: GACCACTGATACCGTCTGTCATCCCTGCCCAGTCGG...AACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS-3UTR TCA 90 bp GCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCTCCATTCCTGTGTGACAGGCTaGCACCCGTGCAGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: AALGRYHCGPPMPELSLHSCVTG*HPCSVS
Trigger: GGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGA...ATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: AVLRARPLLPSRAIASKASRAVQ*LVSRLP
Trigger: AGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS-3UTR CCA 90 bp GACAGGCTGACACCCGTGCAGCGTCTCCTGCACTGGAGCAGCGGTGTTATGACCGGAGAAGAAGCCGACTaGGCAGGGATGACAGACGGT +
Preference number: 4 (lower is better)
Translates to: DRLTPVQRLLHWSSGVMTGEEAD*AGMTDG
Trigger: ACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCC...GGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS-3UTR CCA 90 bp TGCACTGCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACC +
Preference number: 4 (lower is better)
Translates to: CTAALGRYHCGPPMPELSQRLLH*SSGVMT
Trigger: GGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTG...GGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGCAGTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR TCA 90 bp GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATCGAAAAGTGATGACTaGTTGGAGAAGAAGCCGACT +
Preference number: 4 (lower is better)
Translates to: AVLRARPLLPSRAIASKASKSDD*LEKKPT
Trigger: AGTCGGCTTCTTCTCCAATCAGTCATCACTTTTCGA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS-3UTR CCA 90 bp CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGC +
Preference number: 4 (lower is better)
Translates to: QAVLRARPLLPSRAIASKKVMTD*RRSRLG
Trigger: GCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTT...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG
59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS-3UTR TCA 90 bp ATGCTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCCCATCACGACAGGAATaGCCAGCAGGGCTCGCATCC +
Preference number: 4 (lower is better)
Translates to: MLSVTCRSCTEMRLSLPSPSRQE*PAGLAS
Trigger: GGATGCGAGCCCTGCTGGTCATTCCTGTCGTGATGG...GGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS-3UTR GCA 90 bp GGGTTCAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTGCACGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTAC +
Preference number: 4 (lower is better)
Translates to: GFRPGASRLCCLSPAAPARNPCW*SVVLPY
Trigger: GTAAGGAAGGACAACACTGCACCAGCAAGGATTGCG...TGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTGAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS-3UTR TCA 90 bp TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCCCGACTGGGCAGGGATaGCAGACGGTATCAGTGGTC +
Preference number: 4 (lower is better)
Translates to: YVHMCTHGVHYHRAHMEVPTGQG*QTVSVV
Trigger: GACCACTGATACCGTCTGTCATCCCTGCCCAGTCGG...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp AAGGCTAGCCTTGAACTCCTAGTCCTCTTCCTCCTGAGTGCTAGGGTTACAGGCGGAGAAGAAGCCGACTaGGCAGGGATGACAGACGGT +
Preference number: 4 (lower is better)
Translates to: KASLELLVLFLLSARVTGGEEAD*AGMTDG
Trigger: ACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCC...GCCTGTAACCCTAGCACTCAGGAGGAAGAGGACTAGGAGTTCAAGGCTAGCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS-3UTR CCA 90 bp ACCATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACC +
Preference number: 4 (lower is better)
Translates to: TMKSQGSKSGNRVWAASSQRLLH*SSGVMT
Trigger: GGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTG...GGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCATGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp GCTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTTGTCACAGAAGTGGACAGCTaGAAGGGATCTTCCACCGGC +
Preference number: 4 (lower is better)
Translates to: ASWLAQITALAIVEVLFVTEVDS*KGSSTG
Trigger: GCCGGTGGAAGATCCCTTCCAGCTGTCCACTTCTGT...GACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
CDS-3UTR TCA 90 bp TGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATCCATCACGACAGGAATaGCCAGCAGGGCTCGCATCC +
Preference number: 4 (lower is better)
Translates to: CTCAHTGYITTEHTWRSNPSRQE*PAGLAS
Trigger: GGATGCGAGCCCTGCTGGTCATTCCTGTCGTGATGG...ATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS-3UTR TCA 90 bp TGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAACTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACC +
Preference number: 4 (lower is better)
Translates to: CAHVHTRGTLPQSTHGGQLPLLH*DATLFT
Trigger: GGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAG...TTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR GCA 90 bp GCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCT +
Preference number: 4 (lower is better)
Translates to: AHVHTRGTLPQSTHGGQMVTCRS*TEMRLS
Trigger: AGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGAC...CATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp TGGCTCATCTCAAACTTCAAAGGTCAGCAAGCAGTCCTCAGAGCCAGGCCCCTGTCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: WLISNFKGQQAVLRARPLSRAVQ*LVSRLP
Trigger: AGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGA...CAGGGGCCTGGCTCTGAGGACTGCTTGCTGACCTTTGAAGTTTGAGATGAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR TCA 90 bp AAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCCATCTTTCCTGTGTGACAGGCTaGCACCCGTGCAGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: KSGNRVWAASSFTHKSHLSCVTG*HPCSVS
Trigger: GGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGA...AAGATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR TCA 90 bp TGGGCTCTGTCTTGGCTCATCTCAAACTTCAAAGGTCAGCAAGCAGTCCTCAGACTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACC +
Preference number: 4 (lower is better)
Translates to: WALSWLISNFKGQQAVLRLPLLH*DATLFT
Trigger: GGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAG...TCTGAGGACTGCTTGCTGACCTTTGAAGTTTGAGATGAGCCAAGACAGAGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR TCA 90 bp TGCTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCTCCCTTTCCTCTCCTaGGCACTCACTGATATAGAG +
Preference number: 4 (lower is better)
Translates to: CCLSPAAPALRCDSLYHPLPFLS*ALTDIE
Trigger: CTCTATATCAGTGAGTGCTCAGGAGAGGAAAGGGAG...AGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS-3UTR CCA 90 bp CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGATCTCATTATCCTTTaGTTTCTTGACCACCTTTTT +
Preference number: 4 (lower is better)
Translates to: QAVLRARPLLPSRAIASKDLIIL*FLDHLF
Trigger: AAAAAGGTGGTCAAGAAACCAAAGGATAATGAGATC...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS-3UTR TCA 90 bp CCACTGTTGAGGTTTGATCTTGCTCTGTATTGTAATGGGTTTGTGGCCCCAAGACCGACTGGGCAGGGATaGCAGACGGTATCAGTGGTC +
Preference number: 4 (lower is better)
Translates to: PLLRFDLALYCNGFVAPRPTGQG*QTVSVV
Trigger: GACCACTGATACCGTCTGTCATCCCTGCCCAGTCGG...TCTTGGGGCCACAAACCCATTACAATACAGAGCAAGATCAAACCTCAACAGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS-3UTR GCA 90 bp ACCATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCCGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTAC +
Preference number: 4 (lower is better)
Translates to: TMKSQGSKSGNRVWAASSRNPCW*SVVLPY
Trigger: GTAAGGAAGGACAACACTGCACCAGCAAGGATTGCG...GGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCATGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp GTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGACAACCTCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCT +
Preference number: 4 (lower is better)
Translates to: VHTRGTLPQSTHGGQMTTSRAVQ*LVSRLP
Trigger: AGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGA...GGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp GCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGCCCGAAGCCCTTGATTaGGTTCACAGTGTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: AHVHTRGTLPQSTHGGQMPEALD*VHSVCA
Trigger: AGCACAGACACTGTGAACCCAATCAAGGGCTTCGGG...CATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCCCCGAAGCCCTTGATTaGGTTCACAGTGTCTGTGCT +
Preference number: 4 (lower is better)
Translates to: YVHMCTHGVHYHRAHMEVPEALD*VHSVCA
Trigger: AGCACAGACACTGTGAACCCAATCAAGGGCTTCGGG...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR GCA 90 bp GTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGACAACCGCTCCTGCACTGAGATaGGACTCTCTTTACCATCCT +
Preference number: 4 (lower is better)
Translates to: VHTRGTLPQSTHGGQMTTAPALR*DSLYHP
Trigger: AGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGC...GGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGC +
Preference number: 4 (lower is better)
Translates to: YVHMCTHGVHYHRAHMEVKVMTD*RRSRLG
Trigger: GCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTT...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
3UTR CAA 72 bp CAGAAGAGACATAGGTGGGGCTTAGTATTCCTGGGCTaGGCGTTAGAAGAGAACCAAGAGAGAGAAGAGGTG +
Preference number: 4 (lower is better)
Translates to: QKRHRWGLVFLG*ALEENQEREEV
Trigger: CACCTCTTCTCTCTCTTGGTTCTCTTCTAACGCCAAGCCCAGGAATACTAAGCCCCACCTATGTCTCTTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS-3UTR GCA 90 bp TCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCCATGCTCCTGCACTGAGATaGGACTCTCTTTACCATCCT +
Preference number: 4 (lower is better)
Translates to: SKSGNRVWAASSFTHKSHAPALR*DSLYHP
Trigger: AGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGC...ATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR GCA 90 bp GTGTCTTTTATTCAAGAACTAAATGGTAACACACAGGTAGAAACCCCAGGGCGGCGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTAC +
Preference number: 4 (lower is better)
Translates to: VSFIQELNGNTQVETPGRRNPCW*SVVLPY
Trigger: GTAAGGAAGGACAACACTGCACCAGCAAGGATTGCG...CCGCCCTGGGGTTTCTACCTGTGTGTTACCATTTAGTTCTTGAATAAAAGACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CCA 90 bp AAAGTAGATTCAAATAGCATACAGGGTAGGCAGGTGCCCAGTTCTTGTGCTGTTAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGC +
Preference number: 4 (lower is better)
Translates to: KVDSNSIQGRQVPSSCAVKVMTD*RRSRLG
Trigger: GCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTT...AACAGCACAAGAACTGGGCACCTGCCTACCCTGTATGCTATTTGAATCTACTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS-3UTR CCA 90 bp TGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGATCTCATTATCCTTTaGTTTCTTGACCACCTTTTC +
Preference number: 4 (lower is better)
Translates to: CTCAHTGYITTEHTWRSNDLIIL*FLDHLF
Trigger: GAAAAGGTGGTCAAGAAACCAAAGGATAATGAGATC...ATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073707.9
CDS-3UTR TCA 90 bp TGCTCATGGTGTCTGTTTACAGCAATAAAACCCCAACTAAGACAATCATGTAGCTCGAAAAGTGATGACTaGTTGGAGAAGAAGCCGACT +
Preference number: 4 (lower is better)
Translates to: CSWCLFTAIKPQLRQSCSSKSDD*LEKKPT
Trigger: AGTCGGCTTCTTCTCCAATCAGTCATCACTTTTCGA...GCTACATGATTGTCTTAGTTGGGGTTTTATTGCTGTAAACAGACACCATGAGCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
3UTR CAA 72 bp CTGCTTACATACTGTCATATCGTATATAAAAACTGTTaGAAGGATGTGTGGCTTTGTGTGTATGGTTCGGGT +
Preference number: 4 (lower is better)
Translates to: LLTYCHIVYKNC*KDVWLCVYGSG
Trigger: ACCCGAACCATACACACAAAGCCACACATCCTTCAAACAGTTTTTATATACGATATGACAGTATGTAAGCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS-3UTR CAA 90 bp CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: QAVLRARPLLPSRAIASKELCSG*SVGFLA
Trigger: AGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTC...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS-3UTR CAA 90 bp TGCACTGCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCATCTCCTGGGGATCTaGCCGTCGAGCCGCAGGGGG +
Preference number: 5 (lower is better)
Translates to: CTAALGRYHCGPPMPELSHLLGI*PSSRRG
Trigger: CCCCCTGCGGCTCGACGGCAAGATCCCCAGGAGATG...GGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGCAGTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CAA 90 bp GTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCAGTTCATGCCTCGCAATCCTaGCTGGTGCAGTGTTGTCCT +
Preference number: 5 (lower is better)
Translates to: VLRARPLLPSRAIASKAVHASQS*LVQCCP
Trigger: AGGACAACACTGCACCAGCAAGGATTGCGAGGCATG...AACTGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS-3UTR CAA 90 bp GCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCTCCATGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: AALGRYHCGPPMPELSLHELCSG*SVGFLA
Trigger: AGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTC...ATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CAA 90 bp CTCTTTACCATCCTCCTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCT +
Preference number: 5 (lower is better)
Translates to: LFTILLCDRLTPVQRLLHELCSG*SVGFLA
Trigger: AGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTC...GTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS TCA 90 bp GATGTGCTTAGGGCACTGACTGTCCCAGCTGCAGAAAGCCAGTCCTaGACCACGACACCTTCCGCTGTCAACAAGCAGCCCCATAGCGCG +
Preference number: 5 (lower is better)
Translates to: DVLRALTVPAAESQS*TTTPSAVNKQPHSA
Trigger: CGCGCTATGGGGCTGCTTGTTGACAGCGGAAGGTGTCGTGGTTCAGGACTGGCTTTCTGCAGCTGGGACAGTCAGTGCCCTAAGCACATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000140951.8
CDS CCA 90 bp TCGTGGAGGTACTGTTTGTCACTGCACGTAACACACTGCCCTAGATaGACCGCTGTCAACAAGCAGCCCCATAGCGCGCACAGCCGAGGC +
Preference number: 5 (lower is better)
Translates to: SWRYCLSLHVTHCPR*TAVNKQPHSAHSRG
Trigger: GCCTCGGCTGTGCGCGCTATGGGGCTGCTTGTTGACAGCGGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS-3UTR CAA 90 bp GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATCTTATCCTCACAGCTaGTCCAGGGATAACACTTTT +
Preference number: 5 (lower is better)
Translates to: AVLRARPLLPSRAIASKASYPHS*SRDNTF
Trigger: AAAAGTGTTATCCCTGGACAAGCTGTGAGGATAAGA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS CCA 90 bp CCTGAGTCACATGGGTGGCATTGGGTCTTCTCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGG +
Preference number: 5 (lower is better)
Translates to: PESHGWHWVFSRAVQ*LVSRLPGWHKSQHW
Trigger: CCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCACCCATGTGACTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000140951.8
ENSMUST00000184221.2
CDS-3UTR CAA 90 bp GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATTATCCTTTGGTTTCTaGACCACCTTTTCACAGATG +
Preference number: 5 (lower is better)
Translates to: AVLRARPLLPSRAIASKALSFGF*TTFSQM
Trigger: CATCTGTGAAAAGGTGGTCAAGAAACCAAAGGATAA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000073707.9
CDS CCA 90 bp GTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTaGAGGTACTGTTTGTCACTGCACGTAACACACTGCCCTAGATGG +
Preference number: 5 (lower is better)
Translates to: VSRLPGWHKSQHWPS*RYCLSLHVTHCPRW
Trigger: CCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000140951.8
ENSMUST00000184221.2
CDS-3UTR CAA 90 bp AATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCCATCTTACATCTCCTGGGGATCTaGCCGTCGAGCCGCAGGGGG +
Preference number: 5 (lower is better)
Translates to: NQVTGFGQQAPLLTKAILHLLGI*PSSRRG
Trigger: CCCCCTGCGGCTCGACGGCAAGATCCCCAGGAGATG...TAAGATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CAA 90 bp CAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTCTTCCACCGGCATGTaGAAAGTTAGCCAAGACGCA +
Preference number: 5 (lower is better)
Translates to: QSASWLAQITALAIVEVLSSTGM*KVSQDA
Trigger: TGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGA...CAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
CDS TCA 90 bp GGAGGCTGGTTCGACAGGGCTGAACCCTCCCTCCCTTTCCTCTCCTaGGCACTCACTGATATAGAGAAACACCCCGAAAATGGTGATGAG +
Preference number: 5 (lower is better)
Translates to: GGWFDRAEPSLPFLS*ALTDIEKHPENGDE
Trigger: CTCATCACCATTTTCGGGGTGTTTCTCTATATCAGTGAGTGCTCAGGAGAGGAAAGGGAGGGAGGGTTCAGCCCTGTCGAACCAGCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000184221.2
CDS TCA 90 bp CTTGCTGGTGCAGTGTTGTCCTTCCTTACAGGTACAGACAGTGTCTaGTTCTGCGGTGCCCTCCTTCTTAACCCGAAGCCCTTGATTGGG +
Preference number: 5 (lower is better)
Translates to: LAGAVLSFLTGTDSV*FCGALLLNPKPLIG
Trigger: CCCAATCAAGGGCTTCGGGTTAAGAAGGAGGGCACCGCAGAATCAGACACTGTCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS CCA 90 bp CACAGCTTGTCCAGGGATAACACTTTTCGAAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGCAGGGATGACAGACGGTATCAGTGG +
Preference number: 5 (lower is better)
Translates to: HSLSRDNTFRKVMTD*RRSRLGRDDRRYQW
Trigger: CCACTGATACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTTTCGAAAAGTGTTATCCCTGGACAAGCTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000184221.2
CDS-3UTR CAA 90 bp GTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGACAACCTCTTATCCTCACAGCTaGTCCAGGGATAACACTTTT +
Preference number: 5 (lower is better)
Translates to: VHTRGTLPQSTHGGQMTTSYPHS*SRDNTF
Trigger: AAAAGTGTTATCCCTGGACAAGCTGTGAGGATAAGA...GGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
CDS-3UTR CAA 90 bp TGCTCATGGTGTCTGTTTACAGCAATAAAACCCCAACTAAGACAATCATGTAGCCATGCCTCGCAATCCTaGCTGGTGCAGTGTTGTCCT +
Preference number: 5 (lower is better)
Translates to: CSWCLFTAIKPQLRQSCSHASQS*LVQCCP
Trigger: AGGACAACACTGCACCAGCAAGGATTGCGAGGCATG...GCTACATGATTGTCTTAGTTGGGGTTTTATTGCTGTAAACAGACACCATGAGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000017799.12
CDS GCA 72 bp TCCAAAGCCAGGGATACAGGGCGTGTGCTGAGCACATaGCTCGCAATCCTTGCTGGTGCAGTGTTGTCCTTC +
Preference number: 6 (lower is better)
Translates to: SKARDTGRVLST*LAILAGAVLSF
Trigger: GAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCTGTATCCCTGGCTTTGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS CAA 90 bp CCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTaGTCACTGCACGTAACACACTGCCCTAGATGGACCGCTGTCAAC +
Preference number: 6 (lower is better)
Translates to: PGWHKSQHWPSWRYC*SLHVTHCPRWTAVN
Trigger: GTTGACAGCGGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS CAA 90 bp CCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTaGTCACTGCACGTAACACACTGCCCTAGATGGACCTGGGATAGG +
Preference number: 6 (lower is better)
Translates to: PGWHKSQHWPSWRYC*SLHVTHCPRWTWDR
Trigger: CCTATCCCAGGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000140951.8
CDS TCA 72 bp TCCATAACTCCAAAGCCAGGGATACAGGGCGTGTGCTaGGCACATGCCTCGCAATCCTTGCTGGTGCAGTGT +
Preference number: 6 (lower is better)
Translates to: SITPKPGIQGVC*AHASQSLLVQC
Trigger: ACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCTGTATCCCTGGCTTTGGAGTTATGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS CCA 72 bp AGGGCGTGTGCTGAGCACATGCCTCGCAATCCTTGCTaGTGCAGTGTTGTCCTTCCTTACAGGTACAGACAG +
Preference number: 6 (lower is better)
Translates to: RACAEHMPRNPC*CSVVLPYRYRQ
Trigger: CTGTCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS CAA 72 bp GAAGTGGACAGCTGGAAGGGATCTTCCACCGGCATGTaGAAAGTTAGCCAAGACGCAGGCTGTAGCGCTGTC +
Preference number: 6 (lower is better)
Translates to: EVDSWKGSSTGM*KVSQDAGCSAV
Trigger: GACAGCGCTACAGCCTGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
CDS TCA 72 bp AAGTGGACAGCTGGAAGGGATCTTCCACCGGCATGTTaGAAGTTAGCCAAGACGCAGGCTGTAGCGCTGTCA +
Preference number: 6 (lower is better)
Translates to: KWTAGRDLPPAC*KLAKTQAVALS
Trigger: TGACAGCGCTACAGCCTGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
CDS GCA 72 bp GCGTGTGCTGAGCACATGCCTCGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTACAGGTACAGACAGTGT +
Preference number: 6 (lower is better)
Translates to: ACAEHMPRNPCW*SVVLPYRYRQC
Trigger: ACACTGTCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGC
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS GCA 72 bp TACAGGGCGTGTGCTGAGCACATGCCTCGCAATCCTTaGTGGTGCAGTGTTGTCCTTCCTTACAGGTACAGA +
Preference number: 6 (lower is better)
Translates to: YRACAEHMPRNP*WCSVVLPYRYR
Trigger: TCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCTGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000184221.2
CDS CCA 72 bp TGGGCTGAGAATTCGCCTGAGTCACATGGGTGGCATTaGGTCTTCTCAAGAGCTGTGCAGTGGCTTGTCAGT +
Preference number: 6 (lower is better)
Translates to: WAENSPESHGWH*VFSRAVQWLVS
Trigger: ACTGACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCACCCATGTGACTCAGGCGAATTCTCAGCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000140951.8
ENSMUST00000184221.2
CDS CAA 72 bp CACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTaGTCACTGCACGTAACACACTGCCCTAGATGGACC +
Preference number: 6 (lower is better)
Translates to: HKSQHWPSWRYC*SLHVTHCPRWT
Trigger: GGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000017799.12
ENSMUST00000073707.9
ENSMUST00000081310.11
ENSMUST00000140951.8
ENSMUST00000184221.2
CDS CAA 90 bp CTAAAAACAGAAGTGGACAGCTGGAAGGGATCTTCCACCGGCATGTaGAAAGTTAGCCAAGACGCAGGCTGTAGCGCTGTCAACAAGCAG +
Preference number: 6 (lower is better)
Translates to: LKTEVDSWKGSSTGM*KVSQDAGCSAVNKQ
Trigger: CTGCTTGTTGACAGCGCTACAGCCTGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTTCTGTTTTTAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000154443.8
CDS TCA 72 bp GGTTTCTTGACCACCTTTTCACAGATGACATTAGTCTaGCTCGTTCCTTTCTGTAGGACCTCCAAGTTCTTA +
Preference number: 6 (lower is better)
Translates to: GFLTTFSQMTLV*LVPFCRTSKFL
Trigger: TAAGAACTTGGAGGTCCTACAGAAAGGAACGAGTCAGACTAATGTCATCTGTGAAAAGGTGGTCAAGAAACC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000073707.9