Pregenerated sensors for CD40 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000017652Ensembl transcript IDs: ENSMUST00000017799.12, ENSMUST00000073707.9, ENSMUST00000081310.11, ENSMUST00000140951.8, ENSMUST00000154443.8, ENSMUST00000184221.2
Found 120 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCCTGTGTaGCAGGCTGACACCCGTGCAGCGTCTCCTGCACTGGAGCAGCGG | + |
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Preference number: 1 (lower is better) Translates to: AAPALRCDSLYHPPV*QADTRAASPALEQR Trigger: CCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR GCA 90 bp | CAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCTTTACCATCCTCCTGTGTGACAGGC | + |
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Preference number: 1 (lower is better) Translates to: QTRGLKAMLSVTCRS*TEMRLSLPSSCVTG Trigger: GCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR GCA 90 bp | GCCTCCAAAGCAGTTCCAGGGTTCAGACCAGGGGCCTCAAGGCTATaGTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTT | + |
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Preference number: 1 (lower is better) Translates to: ASKAVPGFRPGASRL*CLSPAAPALRCDSL Trigger: AAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTGAACCCTGGAACTGCTTTGGAGGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR CCA 90 bp | ATCCTCCTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACCGGGATAATCTTCCATCTCCTGGGG | + |
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Preference number: 1 (lower is better) Translates to: ILLCDRLTPVQRLLH*SSGVMTGIIFHLLG Trigger: CCCCAGGAGATGGAAGATTATCCCGGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR TCA 90 bp | CAGGGGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACCATCCTCCTGTGTGACAGGCTGACA | + |
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Preference number: 1 (lower is better) Translates to: QGPQGYAVCHLPLLH*DATLFTILLCDRLT Trigger: TGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR GCA 90 bp | TCCAGGGTTCAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTaGCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCCTGT | + |
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Preference number: 1 (lower is better) Translates to: SRVQTRGLKAMLSVT*RSCTEMRLSLPSSC Trigger: ACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTGAACCCTGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR CCA 90 bp | CAGTGGCTTGTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTaGCCATCGTGGAGGTACTGTTTGTCACTGCACGTAACACACTGC | + |
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Preference number: 1 (lower is better) Translates to: QWLVSRLPGWHKSQH*PSWRYCLSLHVTHC Trigger: GCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| 3UTR TCA 90 bp | CACCCTAGCTGTCTGGAAGTCAGCTTCAGCCTAGCAGCCTTCAGATaGAGATATAGAACTCTCAGGTCCTCCTGCACCATGCCTGCCTGG | + |
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Preference number: 1 (lower is better) Translates to: HPSCLEVSFSLAAFR*RYRTLRSSCTMPAW Trigger: CCAGGCAGGCATGGTGCAGGAGGACCTGAGAGTTCTATATCTTCATCTGAAGGCTGCTAGGCTGAAGCTGACTTCCAGACAGCTAGGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR GCA 90 bp | CAGCCTTCAGATGAAGATATAGAACTCTCAGGTCCTCCTGCACCATaGCTGCCTGGATGCTGCCATGTTCCTGCCTTGAGGATAATGGAC | + |
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Preference number: 1 (lower is better) Translates to: QPSDEDIELSGPPAP*LPGCCHVPALRIMD Trigger: GTCCATTATCCTCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGACCTGAGAGTTCTATATCTTCATCTGAAGGCTG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR TCA 90 bp | TGCCTGCCTGGATGCTGCCATGTTCCTGCCTTGAGGATAATGGACTaGACCTCTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTT | + |
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Preference number: 1 (lower is better) Translates to: CLPGCCHVPALRIMD*TSEPVSQPQLNVVL Trigger: AAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCATTATCCTCAAGGCAGGAACATGGCAGCATCCAGGCAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR TCA 90 bp | CCTCCATCCTTAAAAAGCAAGTTGAGAAATGATAGGGGGCAGGCATaGGAGTTAGCTGCACTGGGCTCTGTCTTGGCTCATCTCAAACTT | + |
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Preference number: 1 (lower is better) Translates to: PPSLKSKLRNDRGQA*ELAALGSVLAHLKL Trigger: AAGTTTGAGATGAGCCAAGACAGAGCCCAGTGCAGCTAACTCTCATGCCTGCCCCCTATCATTTCTCAACTTGCTTTTTAAGGATGGAGG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR GCA 90 bp | TTTCTACAATACACCACCACATCCATTTTAGGATATGTGCACATGTaGACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAA | + |
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Preference number: 1 (lower is better) Translates to: FLQYTTTSILGYVHM*THGVHYHRAHMEVK Trigger: TTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATATCCTAAAATGGATGTGGTGGTGTATTGTAGAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR-3UTR GCA 90 bp | AAGGCTAGCCTTGAACTCCTAGTCCTCTTCCTCCTGAGTGCTAGGGTTACAGGCACTGTGGACCCCCGATaGCCGAGCTCTCCCTCCATC | + |
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Preference number: 2 (lower is better) Translates to: KASLELLVLFLLSARVTGTVDPR*PSSPSI Trigger: GATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGT...GCCTGTAACCCTAGCACTCAGGAGGAAGAGGACTAGGAGTTCAAGGCTAGCCTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR CAA 90 bp | AGTCACATGGGTGGCATTGGGTCTTCTCAAGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGGCCAT | + |
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Preference number: 2 (lower is better) Translates to: SHMGGIGSSQELCSG*SVGFLAGTNHSTGH Trigger: ATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCACCCATGTGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| 3UTR-3UTR GCA 90 bp | TGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATACTGTGGACCCCCGATaGCCGAGCTCTCCCTCCATC | + |
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Preference number: 2 (lower is better) Translates to: CTCAHTGYITTEHTWRSNTVDPR*PSSPSI Trigger: GATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGT...ATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR-3UTR CCA 90 bp | TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCGCAGCAAGACGACTCTaGGTCCTGCACTGCTGCACT | + |
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Preference number: 2 (lower is better) Translates to: YVHMCTHGVHYHRAHMEVAARRL*VLHCCT Trigger: AGTGCAGCAGTGCAGGACCCAGAGTCGTCTTGCTGC...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR-3UTR CCA 90 bp | TGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAGCAGCAAGACGACTCTaGGTCCTGCACTGCTGCACT | + |
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Preference number: 2 (lower is better) Translates to: CAHVHTRGTLPQSTHGGQAARRL*VLHCCT Trigger: AGTGCAGCAGTGCAGGACCCAGAGTCGTCTTGCTGC...TTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR-3UTR TCA 90 bp | TGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAGGACTCCTGTGTCCATaGCTCCTTACAGTGAACGCC | + |
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Preference number: 2 (lower is better) Translates to: CAHVHTRGTLPQSTHGGQGLLCP*LLTVNA Trigger: GGCGTTCACTGTAAGGAGTCATGGACACAGGAGTCC...TTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR-3UTR TCA 90 bp | GGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCGGACTCCTGTGTCCATaGCTCCTTACAGTGAACGCC | + |
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Preference number: 2 (lower is better) Translates to: GSKSGNRVWAASSFTHKSGLLCP*LLTVNA Trigger: GGCGTTCACTGTAAGGAGTCATGGACACAGGAGTCC...GCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR-3UTR CCA 90 bp | CTCTTTACCATCCTCCTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACGATCTCATTATCCTTTaGTTTCTTGACCACCTTTTC | + |
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Preference number: 2 (lower is better) Translates to: LFTILLCDRLTPVQRLLHDLIIL*FLDHLF Trigger: GAAAAGGTGGTCAAGAAACCAAAGGATAATGAGATC...GTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCCTGCACTGGAGCAGCGGTGTTATGACCGGGATAATCTTCCATCTCCTGGGTATCCTTTGGTTTCTTaGCCACCTTTTCTAGTGAGA | + |
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Preference number: 2 (lower is better) Translates to: SPALEQRCYDRDNLPSPGYPLVS*PPFLVR Trigger: TCTCACTAGAAAAGGTGGTCAAGAAACCAAAGGATA...CCCAGGAGATGGAAGATTATCCCGGTCATAACACCGCTGCTCCAGTGCAGGAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR CAA 90 bp | ATAGCTAGACAGAAGAGACATAGGTGGGGCTTAGTATTCCTGGGCTaGGCGTTAGAAGAGAACCAAGAGAGAGAAGAGGTGAATGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: IARQKRHRWGLVFLG*ALEENQEREEVNGG Trigger: TCCTCCATTCACCTCTTCTCTCTCTTGGTTCTCTTCTAACGCCAAGCCCAGGAATACTAAGCCCCACCTATGTCTCTTCTGTCTAGCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR-3UTR GCA 90 bp | CCACTGTTGAGGTTTGATCTTGCTCTGTATTGTAATGGGTTTGTGGCCCCAAGATACAGGGTAGGCAGGTaGCCAGTTCTTGTGCTGTTT | + |
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Preference number: 2 (lower is better) Translates to: PLLRFDLALYCNGFVAPRYRVGR*PVLVLF Trigger: AAACAGCACAAGAACTGGGCACCTGCCTACCCTGTA...TCTTGGGGCCACAAACCCATTACAATACAGAGCAAGATCAAACCTCAACAGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR-3UTR CCA 90 bp | GTGTCTTTTATTCAAGAACTAAATGGTAACACACAGGTAGAAACCCCAGGGCGGACAACCCTCTGGATTTaGTTCTCTCCCTTTTACCAT | + |
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Preference number: 2 (lower is better) Translates to: VSFIQELNGNTQVETPGRTTLWI*FSPFYH Trigger: ATGGTAAAAGGGAGAGAACCAAATCCAGAGGGTTGT...CCGCCCTGGGGTTTCTACCTGTGTGTTACCATTTAGTTCTTGAATAAAAGACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR-3UTR CAA 90 bp | CTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCCCATCTCCTGGGGATCTaGCCGTCGAGCCGCAGGGGG | + |
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Preference number: 3 (lower is better) Translates to: LSVTCRSCTEMRLSLPSSHLLGI*PSSRRG Trigger: CCCCCTGCGGCTCGACGGCAAGATCCCCAGGAGATG...GGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR GCA 72 bp | TCAAAGGTCAGCAAGCAGTCCTCAGAGCCAGGCCCCTaGTCCCGAGCCGAGCCATCGCCTCCAAAGCAGTTC | + |
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Preference number: 3 (lower is better) Translates to: SKVSKQSSEPGP*SRAEPSPPKQF Trigger: GAACTGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTGCTGACCTTTGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
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| 3UTR TCA 72 bp | ATGCGACTCTCTTTACCATCCTCCTGTGTGACAGGCTaGCACCCGTGCAGCGTCTCCTGCACTGGAGCAGCG | + |
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Preference number: 3 (lower is better) Translates to: MRLSLPSSCVTG*HPCSVSCTGAA Trigger: CGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR TCA 72 bp | GCACTGAGATGCGACTCTCTTTACCATCCTCCTGTGTaGCAGGCTGACACCCGTGCAGCGTCTCCTGCACTG | + |
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Preference number: 3 (lower is better) Translates to: ALRCDSLYHPPV*QADTRAASPAL Trigger: CAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR GCA 72 bp | CAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTaGCGCTCCTGCACTGAGATGCGACTCTCTTTACCA | + |
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Preference number: 3 (lower is better) Translates to: QTRGLKAMLSVT*RSCTEMRLSLP Trigger: TGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR CCA 72 bp | AGAGCTGTGCAGTGGCTTGTCAGTCGGCTTCCTGGCTaGCACAAATCACAGCACTGGCCATCGTGGAGGTAC | + |
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Preference number: 3 (lower is better) Translates to: RAVQWLVSRLPG*HKSQHWPSWRY Trigger: GTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| 3UTR CCA 72 bp | CTCAAGAGCTGTGCAGTGGCTTGTCAGTCGGCTTCCTaGCTGGCACAAATCACAGCACTGGCCATCGTGGAG | + |
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Preference number: 3 (lower is better) Translates to: LKSCAVACQSAS*LAQITALAIVE Trigger: CTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| 3UTR GCA 72 bp | GGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCTTTACCATCCTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: GLKAMLSVTCRS*TEMRLSLPSSC Trigger: ACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR CCA 72 bp | TGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACCGGGATAATCTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: CDRLTPVQRLLH*SSGVMTGIIFH Trigger: ATGGAAGATTATCCCGGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR TCA 72 bp | CAAGGCTATGCTGTCTGTCACCTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACCATCCTCCTGTGTGAC | + |
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Preference number: 3 (lower is better) Translates to: QGYAVCHLPLLH*DATLFTILLCD Trigger: GTCACACAGGAGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| 3UTR CCA 72 bp | GTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTaGCCATCGTGGAGGTACTGTTTGTCACTGCACGTA | + |
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Preference number: 3 (lower is better) Translates to: VSRLPGWHKSQH*PSWRYCLSLHV Trigger: TACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| 3UTR GCA 72 bp | CTGCTGCACTTGGTAGGTATCACTGTGGACCCCCGATaGCCGAGCTCTCCCTCCATCCTTAAAAAGCAAGTT | + |
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Preference number: 3 (lower is better) Translates to: LLHLVGITVDPR*PSSPSILKKQV Trigger: AACTTGCTTTTTAAGGATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGCAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR CCA 72 bp | CTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTaGAGGTACTGTTTGTCACTGCACGTAACACACTGC | + |
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Preference number: 3 (lower is better) Translates to: LPGWHKSQHWPS*RYCLSLHVTHC Trigger: GCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| 3UTR TCA 72 bp | GTGGACAGTGCACACATGATACACATATGCCCTGTGTaGGGGCTGGAAACTAAACCCAGAGCCTTCGCAGGA | + |
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Preference number: 3 (lower is better) Translates to: VDSAHMIHICPV*GLETKPRAFAG Trigger: TCCTGCGAAGGCTCTGGGTTTAGTTTCCAGCCCTCACACAGGGCATATGTGTATCATGTGTGCACTGTCCAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR CCA 72 bp | TATAGAACTCTCAGGTCCTCCTGCACCATGCCTGCCTaGATGCTGCCATGTTCCTGCCTTGAGGATAATGGA | + |
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Preference number: 3 (lower is better) Translates to: YRTLRSSCTMPA*MLPCSCLEDNG Trigger: TCCATTATCCTCAAGGCAGGAACATGGCAGCATCCAGGCAGGCATGGTGCAGGAGGACCTGAGAGTTCTATA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR-3UTR CAA 90 bp | ACCATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCGCACTGGGCTCTGTCTaGGCTCATCTCAAACTTCAA | + |
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Preference number: 3 (lower is better) Translates to: TMKSQGSKSGNRVWAASSALGSV*AHLKLQ Trigger: TTGAAGTTTGAGATGAGCCAAGACAGAGCCCAGTGC...GGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR CCA 72 bp | TGCCAGCAGCCAATAGCTAGACAGAAGAGACATAGGTaGGGCTTAGTATTCCTGGGCTTGGCGTTAGAAGAG | + |
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Preference number: 3 (lower is better) Translates to: CQQPIARQKRHR*GLVFLGLALEE Trigger: CTCTTCTAACGCCAAGCCCAGGAATACTAAGCCCCACCTATGTCTCTTCTGTCTAGCTATTGGCTGCTGGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR TCA 72 bp | TGTCTGGAAGTCAGCTTCAGCCTAGCAGCCTTCAGATaGAGATATAGAACTCTCAGGTCCTCCTGCACCATG | + |
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Preference number: 3 (lower is better) Translates to: CLEVSFSLAAFR*RYRTLRSSCTM Trigger: CATGGTGCAGGAGGACCTGAGAGTTCTATATCTTCATCTGAAGGCTGCTAGGCTGAAGCTGACTTCCAGACA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR-3UTR CAA 90 bp | GGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCGCACTGGGCTCTGTCTaGGCTCATCTCAAACTTCAA | + |
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Preference number: 3 (lower is better) Translates to: GSKSGNRVWAASSFTHKSALGSV*AHLKLQ Trigger: TTGAAGTTTGAGATGAGCCAAGACAGAGCCCAGTGC...GCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR TCA 72 bp | GGGGTACATTACCACAGAGCACACATGGAGGTCAAATaGCAACCCTCTGGATTTGGTTCTCTCCCTTTTACC | + |
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Preference number: 3 (lower is better) Translates to: GVHYHRAHMEVK*QPSGFGSLPFT Trigger: GGTAAAAGGGAGAGAACCAAATCCAGAGGGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR TCA 72 bp | TTAAAAAGCAAGTTGAGAAATGATAGGGGGCAGGCATaGGAGTTAGCTGCACTGGGCTCTGTCTTGGCTCAT | + |
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Preference number: 3 (lower is better) Translates to: LKSKLRNDRGQA*ELAALGSVLAH Trigger: ATGAGCCAAGACAGAGCCCAGTGCAGCTAACTCTCATGCCTGCCCCCTATCATTTCTCAACTTGCTTTTTAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR TCA 72 bp | CTCCTGAGTGCTAGGGTTACAGGCATGCACCACTGTTaGGGTTTGATCTTGCTCTGTATTGTAATGGGTTTG | + |
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Preference number: 3 (lower is better) Translates to: LLSARVTGMHHC*GLILLCIVMGL Trigger: CAAACCCATTACAATACAGAGCAAGATCAAACCTCAACAGTGGTGCATGCCTGTAACCCTAGCACTCAGGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| 3UTR GCA 72 bp | TACACCACCACATCCATTTTAGGATATGTGCACATGTaGACACACGGGGTACATTACCACAGAGCACACATG | + |
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Preference number: 3 (lower is better) Translates to: YTTTSILGYVHM*THGVHYHRAHM Trigger: CATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATATCCTAAAATGGATGTGGTGGTGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| 3UTR CCA 72 bp | ATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTaGGCAGCAAGCTCCTTTACTCACAAAAGCCATCTT | + |
|
Preference number: 3 (lower is better) Translates to: MKSQGSKSGNRV*AASSFTHKSHL Trigger: AAGATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| 3UTR GCA 72 bp | ATATTATGTGTACAAGTGTTCCACCTGTGTGGACAGTaGACACATGATACACATATGCCCTGTGTGAGGGCT | + |
|
Preference number: 3 (lower is better) Translates to: ILCVQVFHLCGQ*THDTHMPCVRA Trigger: AGCCCTCACACAGGGCATATGTGTATCATGTGTGCACTGTCCACACAGGTGGAACACTTGTACACATAATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| 3UTR GCA 72 bp | ATCTCGCTAGACCACTGTCAAAGTTGGGATTTTCAATaGTTTGTTTTACCCACACAGGCATTCATGGTATCT | + |
|
Preference number: 3 (lower is better) Translates to: ISLDHCQSWDFQ*FVLPTQAFMVS Trigger: AGATACCATGAATGCCTGTGTGGGTAAAACAAAGCATTGAAAATCCCAACTTTGACAGTGGTCTAGCGAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| 3UTR-3UTR CAA 90 bp | ATTTCTACAATACACCACCACATCCATTTTAGGATATGTGCACATGTGCACACAGCCATCTTACCTGCCTaGGAATGTGTTTTAAAAGCT | + |
|
Preference number: 3 (lower is better) Translates to: ISTIHHHIHFRICAHVHTAILPA*ECVLKA Trigger: AGCTTTTAAAACACATTCCAAGGCAGGTAAGATGGC...TGTGTGCACATGTGCACATATCCTAAAATGGATGTGGTGGTGTATTGTAGAAAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR TCA 90 bp | CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAACTGGTTCGACAGGGCTaGACCCTCCCTCCCTTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: QAVLRARPLLPSRAIASKLVRQG*TLPPFP Trigger: AGGAAAGGGAGGGAGGGTTCAGCCCTGTCGAACCAG...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
||
| CDS-3UTR GCA 90 bp | GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCAGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: AVLRARPLLPSRAIASKAVTCRS*TEMRLS Trigger: AGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGAC...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | GCAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAGGAGAAGAAGCCGACTaGGCAGGGATGACAGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: ASSPQSQAPAPEPSHRLQGEEAD*AGMTDG Trigger: ACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCC...TTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
||
| CDS-3UTR TCA 90 bp | CTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACTGGAGCAGCGGTGTTCCGACTGGGCAGGGATaGCAGACGGTATCAGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: LCDRLTPVQRLLHWSSGVPTGQG*QTVSVV Trigger: GACCACTGATACCGTCTGTCATCCCTGCCCAGTCGG...AACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
||
| CDS-3UTR TCA 90 bp | GCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCTCCATTCCTGTGTGACAGGCTaGCACCCGTGCAGCGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: AALGRYHCGPPMPELSLHSCVTG*HPCSVS Trigger: GGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGA...ATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: AVLRARPLLPSRAIASKASRAVQ*LVSRLP Trigger: AGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
||
| CDS-3UTR CCA 90 bp | GACAGGCTGACACCCGTGCAGCGTCTCCTGCACTGGAGCAGCGGTGTTATGACCGGAGAAGAAGCCGACTaGGCAGGGATGACAGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: DRLTPVQRLLHWSSGVMTGEEAD*AGMTDG Trigger: ACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCC...GGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTGCACGGGTGTCAGCCTGTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
||
| CDS-3UTR CCA 90 bp | TGCACTGCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACC | + |
|
Preference number: 4 (lower is better) Translates to: CTAALGRYHCGPPMPELSQRLLH*SSGVMT Trigger: GGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTG...GGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGCAGTGCA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR TCA 90 bp | GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATCGAAAAGTGATGACTaGTTGGAGAAGAAGCCGACT | + |
|
Preference number: 4 (lower is better) Translates to: AVLRARPLLPSRAIASKASKSDD*LEKKPT Trigger: AGTCGGCTTCTTCTCCAATCAGTCATCACTTTTCGA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
||
| CDS-3UTR CCA 90 bp | CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: QAVLRARPLLPSRAIASKKVMTD*RRSRLG Trigger: GCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTT...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG 59% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
||
| CDS-3UTR TCA 90 bp | ATGCTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCCCATCACGACAGGAATaGCCAGCAGGGCTCGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: MLSVTCRSCTEMRLSLPSPSRQE*PAGLAS Trigger: GGATGCGAGCCCTGCTGGTCATTCCTGTCGTGATGG...GGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
||
| CDS-3UTR GCA 90 bp | GGGTTCAGACCAGGGGCCTCAAGGCTATGCTGTCTGTCACCTGCCGCTCCTGCACGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: GFRPGASRLCCLSPAAPARNPCW*SVVLPY Trigger: GTAAGGAAGGACAACACTGCACCAGCAAGGATTGCG...TGCAGGAGCGGCAGGTGACAGACAGCATAGCCTTGAGGCCCCTGGTCTGAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
||
| CDS-3UTR TCA 90 bp | TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCCCGACTGGGCAGGGATaGCAGACGGTATCAGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: YVHMCTHGVHYHRAHMEVPTGQG*QTVSVV Trigger: GACCACTGATACCGTCTGTCATCCCTGCCCAGTCGG...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | AAGGCTAGCCTTGAACTCCTAGTCCTCTTCCTCCTGAGTGCTAGGGTTACAGGCGGAGAAGAAGCCGACTaGGCAGGGATGACAGACGGT | + |
|
Preference number: 4 (lower is better) Translates to: KASLELLVLFLLSARVTGGEEAD*AGMTDG Trigger: ACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCC...GCCTGTAACCCTAGCACTCAGGAGGAAGAGGACTAGGAGTTCAAGGCTAGCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| CDS-3UTR CCA 90 bp | ACCATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCCAGCGTCTCCTGCACTaGAGCAGCGGTGTTATGACC | + |
|
Preference number: 4 (lower is better) Translates to: TMKSQGSKSGNRVWAASSQRLLH*SSGVMT Trigger: GGTCATAACACCGCTGCTCCAGTGCAGGAGACGCTG...GGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCATGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | GCTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTTGTCACAGAAGTGGACAGCTaGAAGGGATCTTCCACCGGC | + |
|
Preference number: 4 (lower is better) Translates to: ASWLAQITALAIVEVLFVTEVDS*KGSSTG Trigger: GCCGGTGGAAGATCCCTTCCAGCTGTCCACTTCTGT...GACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
||
| CDS-3UTR TCA 90 bp | TGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATCCATCACGACAGGAATaGCCAGCAGGGCTCGCATCC | + |
|
Preference number: 4 (lower is better) Translates to: CTCAHTGYITTEHTWRSNPSRQE*PAGLAS Trigger: GGATGCGAGCCCTGCTGGTCATTCCTGTCGTGATGG...ATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| CDS-3UTR TCA 90 bp | TGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAACTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: CAHVHTRGTLPQSTHGGQLPLLH*DATLFT Trigger: GGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAG...TTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR GCA 90 bp | GCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGGTCACCTGCCGCTCCTaGACTGAGATGCGACTCTCT | + |
|
Preference number: 4 (lower is better) Translates to: AHVHTRGTLPQSTHGGQMVTCRS*TEMRLS Trigger: AGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGAC...CATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | TGGCTCATCTCAAACTTCAAAGGTCAGCAAGCAGTCCTCAGAGCCAGGCCCCTGTCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: WLISNFKGQQAVLRARPLSRAVQ*LVSRLP Trigger: AGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGA...CAGGGGCCTGGCTCTGAGGACTGCTTGCTGACCTTTGAAGTTTGAGATGAGCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR TCA 90 bp | AAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCCATCTTTCCTGTGTGACAGGCTaGCACCCGTGCAGCGTCTCC | + |
|
Preference number: 4 (lower is better) Translates to: KSGNRVWAASSFTHKSHLSCVTG*HPCSVS Trigger: GGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGA...AAGATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR TCA 90 bp | TGGGCTCTGTCTTGGCTCATCTCAAACTTCAAAGGTCAGCAAGCAGTCCTCAGACTGCCGCTCCTGCACTaGGATGCGACTCTCTTTACC | + |
|
Preference number: 4 (lower is better) Translates to: WALSWLISNFKGQQAVLRLPLLH*DATLFT Trigger: GGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAG...TCTGAGGACTGCTTGCTGACCTTTGAAGTTTGAGATGAGCCAAGACAGAGCCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR TCA 90 bp | TGCTGTCTGTCACCTGCCGCTCCTGCACTGAGATGCGACTCTCTTTACCATCCTCTCCCTTTCCTCTCCTaGGCACTCACTGATATAGAG | + |
|
Preference number: 4 (lower is better) Translates to: CCLSPAAPALRCDSLYHPLPFLS*ALTDIE Trigger: CTCTATATCAGTGAGTGCTCAGGAGAGGAAAGGGAG...AGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGCGGCAGGTGACAGACAGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
||
| CDS-3UTR CCA 90 bp | CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGATCTCATTATCCTTTaGTTTCTTGACCACCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: QAVLRARPLLPSRAIASKDLIIL*FLDHLF Trigger: AAAAAGGTGGTCAAGAAACCAAAGGATAATGAGATC...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| CDS-3UTR TCA 90 bp | CCACTGTTGAGGTTTGATCTTGCTCTGTATTGTAATGGGTTTGTGGCCCCAAGACCGACTGGGCAGGGATaGCAGACGGTATCAGTGGTC | + |
|
Preference number: 4 (lower is better) Translates to: PLLRFDLALYCNGFVAPRPTGQG*QTVSVV Trigger: GACCACTGATACCGTCTGTCATCCCTGCCCAGTCGG...TCTTGGGGCCACAAACCCATTACAATACAGAGCAAGATCAAACCTCAACAGTGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| CDS-3UTR GCA 90 bp | ACCATGAAGTCCCAGGGATCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCCGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: TMKSQGSKSGNRVWAASSRNPCW*SVVLPY Trigger: GTAAGGAAGGACAACACTGCACCAGCAAGGATTGCG...GGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGATCCCTGGGACTTCATGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | GTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGACAACCTCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCT | + |
|
Preference number: 4 (lower is better) Translates to: VHTRGTLPQSTHGGQMTTSRAVQ*LVSRLP Trigger: AGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGA...GGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | GCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGCCCGAAGCCCTTGATTaGGTTCACAGTGTCTGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: AHVHTRGTLPQSTHGGQMPEALD*VHSVCA Trigger: AGCACAGACACTGTGAACCCAATCAAGGGCTTCGGG...CATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCCCCGAAGCCCTTGATTaGGTTCACAGTGTCTGTGCT | + |
|
Preference number: 4 (lower is better) Translates to: YVHMCTHGVHYHRAHMEVPEALD*VHSVCA Trigger: AGCACAGACACTGTGAACCCAATCAAGGGCTTCGGG...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR GCA 90 bp | GTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGACAACCGCTCCTGCACTGAGATaGGACTCTCTTTACCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: VHTRGTLPQSTHGGQMTTAPALR*DSLYHP Trigger: AGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGC...GGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | TATGTGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: YVHMCTHGVHYHRAHMEVKVMTD*RRSRLG Trigger: GCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTT...GACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCACATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| 3UTR CAA 72 bp | CAGAAGAGACATAGGTGGGGCTTAGTATTCCTGGGCTaGGCGTTAGAAGAGAACCAAGAGAGAGAAGAGGTG | + |
|
Preference number: 4 (lower is better) Translates to: QKRHRWGLVFLG*ALEENQEREEV Trigger: CACCTCTTCTCTCTCTTGGTTCTCTTCTAACGCCAAGCCCAGGAATACTAAGCCCCACCTATGTCTCTTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| CDS-3UTR GCA 90 bp | TCAAAATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCCATGCTCCTGCACTGAGATaGGACTCTCTTTACCATCCT | + |
|
Preference number: 4 (lower is better) Translates to: SKSGNRVWAASSFTHKSHAPALR*DSLYHP Trigger: AGGATGGTAAAGAGAGTCGCATCTCAGTGCAGGAGC...ATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATTTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR GCA 90 bp | GTGTCTTTTATTCAAGAACTAAATGGTAACACACAGGTAGAAACCCCAGGGCGGCGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTAC | + |
|
Preference number: 4 (lower is better) Translates to: VSFIQELNGNTQVETPGRRNPCW*SVVLPY Trigger: GTAAGGAAGGACAACACTGCACCAGCAAGGATTGCG...CCGCCCTGGGGTTTCTACCTGTGTGTTACCATTTAGTTCTTGAATAAAAGACAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CCA 90 bp | AAAGTAGATTCAAATAGCATACAGGGTAGGCAGGTGCCCAGTTCTTGTGCTGTTAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: KVDSNSIQGRQVPSSCAVKVMTD*RRSRLG Trigger: GCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTT...AACAGCACAAGAACTGGGCACCTGCCTACCCTGTATGCTATTTGAATCTACTTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| CDS-3UTR CCA 90 bp | TGCACATGTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGATCTCATTATCCTTTaGTTTCTTGACCACCTTTTC | + |
|
Preference number: 4 (lower is better) Translates to: CTCAHTGYITTEHTWRSNDLIIL*FLDHLF Trigger: GAAAAGGTGGTCAAGAAACCAAAGGATAATGAGATC...ATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCACATGTGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073707.9 |
||
| CDS-3UTR TCA 90 bp | TGCTCATGGTGTCTGTTTACAGCAATAAAACCCCAACTAAGACAATCATGTAGCTCGAAAAGTGATGACTaGTTGGAGAAGAAGCCGACT | + |
|
Preference number: 4 (lower is better) Translates to: CSWCLFTAIKPQLRQSCSSKSDD*LEKKPT Trigger: AGTCGGCTTCTTCTCCAATCAGTCATCACTTTTCGA...GCTACATGATTGTCTTAGTTGGGGTTTTATTGCTGTAAACAGACACCATGAGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| 3UTR CAA 72 bp | CTGCTTACATACTGTCATATCGTATATAAAAACTGTTaGAAGGATGTGTGGCTTTGTGTGTATGGTTCGGGT | + |
|
Preference number: 4 (lower is better) Translates to: LLTYCHIVYKNC*KDVWLCVYGSG Trigger: ACCCGAACCATACACACAAAGCCACACATCCTTCAAACAGTTTTTATATACGATATGACAGTATGTAAGCAG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
||
| CDS-3UTR CAA 90 bp | CAAGCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCT | + |
|
Preference number: 5 (lower is better) Translates to: QAVLRARPLLPSRAIASKELCSG*SVGFLA Trigger: AGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTC...TTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGCTTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
||
| CDS-3UTR CAA 90 bp | TGCACTGCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCATCTCCTGGGGATCTaGCCGTCGAGCCGCAGGGGG | + |
|
Preference number: 5 (lower is better) Translates to: CTAALGRYHCGPPMPELSHLLGI*PSSRRG Trigger: CCCCCTGCGGCTCGACGGCAAGATCCCCAGGAGATG...GGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGCAGTGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
||
| CDS-3UTR CAA 90 bp | GTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCAGTTCATGCCTCGCAATCCTaGCTGGTGCAGTGTTGTCCT | + |
|
Preference number: 5 (lower is better) Translates to: VLRARPLLPSRAIASKAVHASQS*LVQCCP Trigger: AGGACAACACTGCACCAGCAAGGATTGCGAGGCATG...AACTGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
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| CDS-3UTR CAA 90 bp | GCTGCACTTGGTAGGTATCACTGTGGACCCCCGATGCCCGAGCTCTCCCTCCATGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: AALGRYHCGPPMPELSLHELCSG*SVGFLA Trigger: AGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTC...ATGGAGGGAGAGCTCGGGCATCGGGGGTCCACAGTGATACCTACCAAGTGCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| CDS-3UTR CAA 90 bp | CTCTTTACCATCCTCCTGTGTGACAGGCTGACACCCGTGCAGCGTCTCCTGCACGAGCTGTGCAGTGGCTaGTCAGTCGGCTTCCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: LFTILLCDRLTPVQRLLHELCSG*SVGFLA Trigger: AGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTC...GTGCAGGAGACGCTGCACGGGTGTCAGCCTGTCACACAGGAGGATGGTAAAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| CDS TCA 90 bp | GATGTGCTTAGGGCACTGACTGTCCCAGCTGCAGAAAGCCAGTCCTaGACCACGACACCTTCCGCTGTCAACAAGCAGCCCCATAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: DVLRALTVPAAESQS*TTTPSAVNKQPHSA Trigger: CGCGCTATGGGGCTGCTTGTTGACAGCGGAAGGTGTCGTGGTTCAGGACTGGCTTTCTGCAGCTGGGACAGTCAGTGCCCTAAGCACATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140951.8 |
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| CDS CCA 90 bp | TCGTGGAGGTACTGTTTGTCACTGCACGTAACACACTGCCCTAGATaGACCGCTGTCAACAAGCAGCCCCATAGCGCGCACAGCCGAGGC | + |
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Preference number: 5 (lower is better) Translates to: SWRYCLSLHVTHCPR*TAVNKQPHSAHSRG Trigger: GCCTCGGCTGTGCGCGCTATGGGGCTGCTTGTTGACAGCGGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS-3UTR CAA 90 bp | GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATCTTATCCTCACAGCTaGTCCAGGGATAACACTTTT | + |
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Preference number: 5 (lower is better) Translates to: AVLRARPLLPSRAIASKASYPHS*SRDNTF Trigger: AAAAGTGTTATCCCTGGACAAGCTGTGAGGATAAGA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
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| CDS CCA 90 bp | CCTGAGTCACATGGGTGGCATTGGGTCTTCTCAAGAGCTGTGCAGTaGCTTGTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGG | + |
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Preference number: 5 (lower is better) Translates to: PESHGWHWVFSRAVQ*LVSRLPGWHKSQHW Trigger: CCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCACCCATGTGACTCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000140951.8 ENSMUST00000184221.2 |
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| CDS-3UTR CAA 90 bp | GCAGTCCTCAGAGCCAGGCCCCTGCTCCCGAGCCGAGCCATCGCCTCCAAAGCATTATCCTTTGGTTTCTaGACCACCTTTTCACAGATG | + |
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Preference number: 5 (lower is better) Translates to: AVLRARPLLPSRAIASKALSFGF*TTFSQM Trigger: CATCTGTGAAAAGGTGGTCAAGAAACCAAAGGATAA...TGCTTTGGAGGCGATGGCTCGGCTCGGGAGCAGGGGCCTGGCTCTGAGGACTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073707.9 |
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| CDS CCA 90 bp | GTCAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTaGAGGTACTGTTTGTCACTGCACGTAACACACTGCCCTAGATGG | + |
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Preference number: 5 (lower is better) Translates to: VSRLPGWHKSQHWPS*RYCLSLHVTHCPRW Trigger: CCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000140951.8 ENSMUST00000184221.2 |
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| CDS-3UTR CAA 90 bp | AATCAGGTAACCGGGTTTGGGCAGCAAGCTCCTTTACTCACAAAAGCCATCTTACATCTCCTGGGGATCTaGCCGTCGAGCCGCAGGGGG | + |
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Preference number: 5 (lower is better) Translates to: NQVTGFGQQAPLLTKAILHLLGI*PSSRRG Trigger: CCCCCTGCGGCTCGACGGCAAGATCCCCAGGAGATG...TAAGATGGCTTTTGTGAGTAAAGGAGCTTGCTGCCCAAACCCGGTTACCTGATT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| CDS-3UTR CAA 90 bp | CAGTCGGCTTCCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTCTTCCACCGGCATGTaGAAAGTTAGCCAAGACGCA | + |
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Preference number: 5 (lower is better) Translates to: QSASWLAQITALAIVEVLSSTGM*KVSQDA Trigger: TGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGA...CAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGGAAGCCGACTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| CDS TCA 90 bp | GGAGGCTGGTTCGACAGGGCTGAACCCTCCCTCCCTTTCCTCTCCTaGGCACTCACTGATATAGAGAAACACCCCGAAAATGGTGATGAG | + |
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Preference number: 5 (lower is better) Translates to: GGWFDRAEPSLPFLS*ALTDIEKHPENGDE Trigger: CTCATCACCATTTTCGGGGTGTTTCTCTATATCAGTGAGTGCTCAGGAGAGGAAAGGGAGGGAGGGTTCAGCCCTGTCGAACCAGCCTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000184221.2 |
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| CDS TCA 90 bp | CTTGCTGGTGCAGTGTTGTCCTTCCTTACAGGTACAGACAGTGTCTaGTTCTGCGGTGCCCTCCTTCTTAACCCGAAGCCCTTGATTGGG | + |
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Preference number: 5 (lower is better) Translates to: LAGAVLSFLTGTDSV*FCGALLLNPKPLIG Trigger: CCCAATCAAGGGCTTCGGGTTAAGAAGGAGGGCACCGCAGAATCAGACACTGTCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS CCA 90 bp | CACAGCTTGTCCAGGGATAACACTTTTCGAAAAGTGATGACTGATTaGAGAAGAAGCCGACTGGGCAGGGATGACAGACGGTATCAGTGG | + |
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Preference number: 5 (lower is better) Translates to: HSLSRDNTFRKVMTD*RRSRLGRDDRRYQW Trigger: CCACTGATACCGTCTGTCATCCCTGCCCAGTCGGCTTCTTCTCCAATCAGTCATCACTTTTCGAAAAGTGTTATCCCTGGACAAGCTGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000184221.2 |
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| CDS-3UTR CAA 90 bp | GTGCACACACGGGGTACATTACCACAGAGCACACATGGAGGTCAAATGACAACCTCTTATCCTCACAGCTaGTCCAGGGATAACACTTTT | + |
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Preference number: 5 (lower is better) Translates to: VHTRGTLPQSTHGGQMTTSYPHS*SRDNTF Trigger: AAAAGTGTTATCCCTGGACAAGCTGTGAGGATAAGA...GGTTGTCATTTGACCTCCATGTGTGCTCTGTGGTAATGTACCCCGTGTGTGCAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 |
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| CDS-3UTR CAA 90 bp | TGCTCATGGTGTCTGTTTACAGCAATAAAACCCCAACTAAGACAATCATGTAGCCATGCCTCGCAATCCTaGCTGGTGCAGTGTTGTCCT | + |
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Preference number: 5 (lower is better) Translates to: CSWCLFTAIKPQLRQSCSHASQS*LVQCCP Trigger: AGGACAACACTGCACCAGCAAGGATTGCGAGGCATG...GCTACATGATTGTCTTAGTTGGGGTTTTATTGCTGTAAACAGACACCATGAGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000017799.12 |
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| CDS GCA 72 bp | TCCAAAGCCAGGGATACAGGGCGTGTGCTGAGCACATaGCTCGCAATCCTTGCTGGTGCAGTGTTGTCCTTC | + |
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Preference number: 6 (lower is better) Translates to: SKARDTGRVLST*LAILAGAVLSF Trigger: GAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCTGTATCCCTGGCTTTGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS CAA 90 bp | CCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTaGTCACTGCACGTAACACACTGCCCTAGATGGACCGCTGTCAAC | + |
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Preference number: 6 (lower is better) Translates to: PGWHKSQHWPSWRYC*SLHVTHCPRWTAVN Trigger: GTTGACAGCGGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS CAA 90 bp | CCTGGCTGGCACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTaGTCACTGCACGTAACACACTGCCCTAGATGGACCTGGGATAGG | + |
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Preference number: 6 (lower is better) Translates to: PGWHKSQHWPSWRYC*SLHVTHCPRWTWDR Trigger: CCTATCCCAGGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTGCCAGCCAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140951.8 |
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| CDS TCA 72 bp | TCCATAACTCCAAAGCCAGGGATACAGGGCGTGTGCTaGGCACATGCCTCGCAATCCTTGCTGGTGCAGTGT | + |
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Preference number: 6 (lower is better) Translates to: SITPKPGIQGVC*AHASQSLLVQC Trigger: ACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCTGTATCCCTGGCTTTGGAGTTATGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS CCA 72 bp | AGGGCGTGTGCTGAGCACATGCCTCGCAATCCTTGCTaGTGCAGTGTTGTCCTTCCTTACAGGTACAGACAG | + |
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Preference number: 6 (lower is better) Translates to: RACAEHMPRNPC*CSVVLPYRYRQ Trigger: CTGTCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS CAA 72 bp | GAAGTGGACAGCTGGAAGGGATCTTCCACCGGCATGTaGAAAGTTAGCCAAGACGCAGGCTGTAGCGCTGTC | + |
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Preference number: 6 (lower is better) Translates to: EVDSWKGSSTGM*KVSQDAGCSAV Trigger: GACAGCGCTACAGCCTGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| CDS TCA 72 bp | AAGTGGACAGCTGGAAGGGATCTTCCACCGGCATGTTaGAAGTTAGCCAAGACGCAGGCTGTAGCGCTGTCA | + |
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Preference number: 6 (lower is better) Translates to: KWTAGRDLPPAC*KLAKTQAVALS Trigger: TGACAGCGCTACAGCCTGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| CDS GCA 72 bp | GCGTGTGCTGAGCACATGCCTCGCAATCCTTGCTGGTaGAGTGTTGTCCTTCCTTACAGGTACAGACAGTGT | + |
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Preference number: 6 (lower is better) Translates to: ACAEHMPRNPCW*SVVLPYRYRQC Trigger: ACACTGTCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS GCA 72 bp | TACAGGGCGTGTGCTGAGCACATGCCTCGCAATCCTTaGTGGTGCAGTGTTGTCCTTCCTTACAGGTACAGA | + |
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Preference number: 6 (lower is better) Translates to: YRACAEHMPRNP*WCSVVLPYRYR Trigger: TCTGTACCTGTAAGGAAGGACAACACTGCACCAGCAAGGATTGCGAGGCATGTGCTCAGCACACGCCCTGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000184221.2 |
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| CDS CCA 72 bp | TGGGCTGAGAATTCGCCTGAGTCACATGGGTGGCATTaGGTCTTCTCAAGAGCTGTGCAGTGGCTTGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: WAENSPESHGWH*VFSRAVQWLVS Trigger: ACTGACAAGCCACTGCACAGCTCTTGAGAAGACCCAATGCCACCCATGTGACTCAGGCGAATTCTCAGCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000140951.8 ENSMUST00000184221.2 |
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| CDS CAA 72 bp | CACAAATCACAGCACTGGCCATCGTGGAGGTACTGTTaGTCACTGCACGTAACACACTGCCCTAGATGGACC | + |
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Preference number: 6 (lower is better) Translates to: HKSQHWPSWRYC*SLHVTHCPRWT Trigger: GGTCCATCTAGGGCAGTGTGTTACGTGCAGTGACAAACAGTACCTCCACGATGGCCAGTGCTGTGATTTGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000017799.12 ENSMUST00000073707.9 ENSMUST00000081310.11 ENSMUST00000140951.8 ENSMUST00000184221.2 |
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| CDS CAA 90 bp | CTAAAAACAGAAGTGGACAGCTGGAAGGGATCTTCCACCGGCATGTaGAAAGTTAGCCAAGACGCAGGCTGTAGCGCTGTCAACAAGCAG | + |
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Preference number: 6 (lower is better) Translates to: LKTEVDSWKGSSTGM*KVSQDAGCSAVNKQ Trigger: CTGCTTGTTGACAGCGCTACAGCCTGCGTCTTGGCTAACTTTCAACATGCCGGTGGAAGATCCCTTCCAGCTGTCCACTTCTGTTTTTAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000154443.8 |
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| CDS TCA 72 bp | GGTTTCTTGACCACCTTTTCACAGATGACATTAGTCTaGCTCGTTCCTTTCTGTAGGACCTCCAAGTTCTTA | + |
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Preference number: 6 (lower is better) Translates to: GFLTTFSQMTLV*LVPFCRTSKFL Trigger: TAAGAACTTGGAGGTCCTACAGAAAGGAACGAGTCAGACTAATGTCATCTGTGAAAAGGTGGTCAAGAAACC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073707.9 |
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