Pregenerated sensors for CD3D (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032094Ensembl transcript IDs: ENSMUST00000034602.9, ENSMUST00000214715.2
Found 65 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGGGGCCAGGATGGGAAGCTGTCCCTCGTACTGCCTGTCTGGGTCTaGGGAGAGGAAGCCAGAAGTGAGGGGCCACGGGTGGGCAGAACT | + |
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Preference number: 1 (lower is better) Translates to: RGQDGKLSLVLPVWV*GEEARSEGPRVGRT Trigger: AGTTCTGCCCACCCGTGGCCCCTCACTTCTGGCTTCCTCTCCTCAGACCCAGACAGGCAGTACGAGGGACAGCTTCCCATCCTGGCCCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR TCA 90 bp | GTCCCTCGTACTGCCTGTCTGGGTCTGAGGAGAGGAAGCCAGAAGTaGGGGGCCACGGGTGGGCAGAACTCAGCCAAGCTAAGACAACTC | + |
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Preference number: 1 (lower is better) Translates to: VPRTACLGLRRGSQK*GATGGQNSAKLRQL Trigger: GAGTTGTCTTAGCTTGGCTGAGTTCTGCCCACCCGTGGCCCCTCACTTCTGGCTTCCTCTCCTCAGACCCAGACAGGCAGTACGAGGGAC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CCA 90 bp | GTCTCAAGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGTCTGGCCGTaGACAAGCGCCTTAGAGCAAGCACTGTTCGAGACCAAAGCTGAA | + |
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Preference number: 1 (lower is better) Translates to: VSSLAVLSCCWVVWP*TSALEQALFETKAE Trigger: TTCAGCTTTGGTCTCGAACAGTGCTTGCTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGAGAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CCA 90 bp | ACACAAGTCTCAAGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGTCTaGCCGTGGACAAGCGCCTTAGAGCAAGCACTGTTCGAGACCAAA | + |
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Preference number: 1 (lower is better) Translates to: TQVSSLAVLSCCWVV*PWTSALEQALFETK Trigger: TTTGGTCTCGAACAGTGCTTGCTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGAGACTTGTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR TCA 90 bp | AAAATCCCGGAAGTTGTTATGATAGGGACTGGAACCAACAGGCAATaGAGCAGAGTGGCTGGGCTGACCCTGCCCACAGGAAACCCACAG | + |
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Preference number: 1 (lower is better) Translates to: KIPEVVMIGTGTNRQ*SRVAGLTLPTGNPQ Trigger: CTGTGGGTTTCCTGTGGGCAGGGTCAGCCCAGCCACTCTGCTTCATTGCCTGTTGGTTCCAGTCCCTATCATAACAACTTCCGGGATTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CCA 90 bp | TGTTATGATAGGGACTGGAACCAACAGGCAATGAAGCAGAGTGGCTaGGCTGACCCTGCCCACAGGAAACCCACAGGGTTAGAAATGCCA | + |
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Preference number: 1 (lower is better) Translates to: CYDRDWNQQAMKQSG*ADPAHRKPTGLEMP Trigger: TGGCATTTCTAACCCTGTGGGTTTCCTGTGGGCAGGGTCAGCCCAGCCACTCTGCTTCATTGCCTGTTGGTTCCAGTCCCTATCATAACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR GCA 90 bp | AAGCTAAGACAACTCTCAATCCATGCTTTGGAAAACACAGGCGCCTaGCGACGGAAGGAAACGTCTTTATTGGTTGATCACAGGGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: KLRQLSIHALENTGA*RRKETSLLVDHRGR Trigger: CCTTCCCCTGTGATCAACCAATAAAGACGTTTCCTTCCGTCGGCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGAGTTGTCTTAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CCA 90 bp | TCTGAGCCCCAATATTCTTCTCTGCCACCCCCATTCATGATGTCATaGAAACTTCTTTGTGGCTCAGCTTCTAAACACCACAGCCTGCTT | + |
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Preference number: 1 (lower is better) Translates to: SEPQYSSLPPPFMMS*KLLCGSASKHHSLL Trigger: AAGCAGGCTGTGGTGTTTAGAAGCTGAGCCACAAAGAAGTTTCCATGACATCATGAATGGGGGTGGCAGAGAAGAATATTGGGGCTCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR TCA 90 bp | GCAGTTCTCAGCTGCTGCTGGGTGGTCTGGCCGTGGACAAGCGCCTTAGAGCAAGCAGAGTGGCTGGGCTaGCCCTGCCCACAGGAAACC | + |
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Preference number: 2 (lower is better) Translates to: AVLSCCWVVWPWTSALEQAEWLG*PCPQET Trigger: GGTTTCCTGTGGGCAGGGTCAGCCCAGCCACTCTGC...TTGCTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR GCA 90 bp | AGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGTCTGGCCGTGGACAAGCGCCTTAGTGGGTAAGGGTGCTTaGCACACAAGCCTCATGACC | + |
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Preference number: 2 (lower is better) Translates to: SLAVLSCCWVVWPWTSALVGKGA*HTSLMT Trigger: GGTCATGAGGCTTGTGTGGCAAGCACCCTTACCCAC...TAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR CCA 90 bp | GCAGTTCTCAGCTGCTGCTGGGTGGTCTGGCCGTGGACAAGCGCCTTAGAGCAACACCACAGCCTGCTTTaGGCTGTGGTAAGGCAGCAA | + |
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Preference number: 2 (lower is better) Translates to: AVLSCCWVVWPWTSALEQHHSLL*AVVRQQ Trigger: TTGCTGCCTTACCACAGCCCAAAGCAGGCTGTGGTG...TTGCTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR CCA 90 bp | AAACCCACAGGGTTAGAAATGCCAAGGGGCCAGGATGGGAAGCTGTCCCTCGTATCTCAATCCATGCTTTaGAAAACACAGGCGCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: KPTGLEMPRGQDGKLSLVSQSML*KTQAPA Trigger: GGCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGA...TACGAGGGACAGCTTCCCATCCTGGCCCCTTGGCATTTCTAACCCTGTGGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR GCA 90 bp | CATAGCACAGCACACAAGTCTCAAGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGACAACTCTCAATCCATaGTTTGGAAAACACAGGCGC | + |
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Preference number: 2 (lower is better) Translates to: HSTAHKSQAWQFSAAAGWTTLNP*FGKHRR Trigger: GCGCCTGTGTTTTCCAAAGCATGGATTGAGAGTTGT...CCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGAGACTTGTGTGCTGTGCTATG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CAA 90 bp | GGTGGGCAGAACTCAGCCAAGCTAAGACAACTCTCAATCCATGCTTaGGAAAACACAGGCGCCTGCCGACGGAAGGAAACGTCTTTATTG | + |
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Preference number: 2 (lower is better) Translates to: GGQNSAKLRQLSIHA*ENTGACRRKETSLL Trigger: CAATAAAGACGTTTCCTTCCGTCGGCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGAGTTGTCTTAGCTTGGCTGAGTTCTGCCCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR TCA 90 bp | AATGAATTTCCACCGTGTGAGTCAGGCAACACTGCCAGAAACACCTGGAATTCACTGCCTGTCTGGGTCTaGGGAGAGGAAGCCAGAAGT | + |
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Preference number: 2 (lower is better) Translates to: NEFPPCESGNTARNTWNSLPVWV*GEEARS Trigger: ACTTCTGGCTTCCTCTCCTCAGACCCAGACAGGCAG...TGAATTCCAGGTGTTTCTGGCAGTGTTGCCTGACTCACACGGTGGAAATTCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR TCA 90 bp | AATGAATTTCCACCGTGTGAGTCAGGCAACACTGCCAGAAACACCTGGAATTCAGGAACCAACAGGCAATaGAGCAGAGTGGCTGGGCTG | + |
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Preference number: 2 (lower is better) Translates to: NEFPPCESGNTARNTWNSGTNRQ*SRVAGL Trigger: CAGCCCAGCCACTCTGCTTCATTGCCTGTTGGTTCC...TGAATTCCAGGTGTTTCTGGCAGTGTTGCCTGACTCACACGGTGGAAATTCATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR GCA 90 bp | GACCTTAGTACAATCCCCAGAACCCACGAAGTGAGAAGAAAATTCTTGACAGCTAGGGGAAGGCGCCGTTaGTATGGCACTTTGAGAAAC | + |
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Preference number: 2 (lower is better) Translates to: DLSTIPRTHEVRRKFLTARGRRR*YGTLRN Trigger: GTTTCTCAAAGTGCCATAGCAACGGCGCCTTCCCCT...AGCTGTCAAGAATTTTCTTCTCACTTCGTGGGTTCTGGGGATTGTACTAAGGTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR TCA 90 bp | CATGACCTTAGTACAATCCCCAGAACCCACGAAGTGAGAAGAAAATTCTTGACACACACACACACCCTCTaGGCCCCAATATTCTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: HDLSTIPRTHEVRRKFLTHTHTL*APIFFS Trigger: AGAGAAGAATATTGGGGCTCAGAGGGTGTGTGTGTG...TGTCAAGAATTTTCTTCTCACTTCGTGGGTTCTGGGGATTGTACTAAGGTCATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR CCA 90 bp | TGTTTCCATAGGAAACCACTATGTTTCCACACCAACAGGAAACTGTACAATAAGGGCAAGATGGCTCAGTaGGTAAGGGTGCTTGCCACA | + |
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Preference number: 2 (lower is better) Translates to: CFHRKPLCFHTNRKLYNKGKMAQ*VRVLAT Trigger: TGTGGCAAGCACCCTTACCCACTGAGCCATCTTGCC...CTTATTGTACAGTTTCCTGTTGGTGTGGAAACATAGTGGTTTCCTATGGAAACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR CCA 90 bp | TGTTTCCATAGGAAACCACTATGTTTCCACACCAACAGGAAACTGTACAATAAGTGTTATGATAGGGACTaGAACCAACAGGCAATGAAG | + |
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Preference number: 2 (lower is better) Translates to: CFHRKPLCFHTNRKLYNKCYDRD*NQQAMK Trigger: CTTCATTGCCTGTTGGTTCCAGTCCCTATCATAACA...CTTATTGTACAGTTTCCTGTTGGTGTGGAAACATAGTGGTTTCCTATGGAAACA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR TCA 72 bp | ACTGCCTGTCTGGGTCTGAGGAGAGGAAGCCAGAAGTaGGGGGCCACGGGTGGGCAGAACTCAGCCAAGCTA | + |
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Preference number: 3 (lower is better) Translates to: TACLGLRRGSQK*GATGGQNSAKL Trigger: TAGCTTGGCTGAGTTCTGCCCACCCGTGGCCCCTCACTTCTGGCTTCCTCTCCTCAGACCCAGACAGGCAGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR GCA 72 bp | TGCCAAGGGGCCAGGATGGGAAGCTGTCCCTCGTACTaGCTGTCTGGGTCTGAGGAGAGGAAGCCAGAAGTG | + |
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Preference number: 3 (lower is better) Translates to: CQGARMGSCPSY*LSGSEERKPEV Trigger: CACTTCTGGCTTCCTCTCCTCAGACCCAGACAGGCAGTACGAGGGACAGCTTCCCATCCTGGCCCCTTGGCA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR GCA 72 bp | AGCACACAAGTCTCAAGCCTGGCAGTTCTCAGCTGCTaGTGGGTGGTCTGGCCGTGGACAAGCGCCTTAGAG | + |
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Preference number: 3 (lower is better) Translates to: STQVSSLAVLSC*WVVWPWTSALE Trigger: CTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGAGACTTGTGTGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR GCA 72 bp | CACAGCACACAAGTCTCAAGCCTGGCAGTTCTCAGCTaGTGCTGGGTGGTCTGGCCGTGGACAAGCGCCTTA | + |
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Preference number: 3 (lower is better) Translates to: HSTQVSSLAVLS*CWVVWPWTSAL Trigger: TAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGAGACTTGTGTGCTGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CCA 72 bp | TCAAGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGTCTaGCCGTGGACAAGCGCCTTAGAGCAAGCACTGTTC | + |
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Preference number: 3 (lower is better) Translates to: SSLAVLSCCWVV*PWTSALEQALF Trigger: GAACAGTGCTTGCTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CCA 72 bp | AGGGACTGGAACCAACAGGCAATGAAGCAGAGTGGCTaGGCTGACCCTGCCCACAGGAAACCCACAGGGTTA | + |
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Preference number: 3 (lower is better) Translates to: RDWNQQAMKQSG*ADPAHRKPTGL Trigger: TAACCCTGTGGGTTTCCTGTGGGCAGGGTCAGCCCAGCCACTCTGCTTCATTGCCTGTTGGTTCCAGTCCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR CCA 72 bp | ACACAAGTCTCAAGCCTGGCAGTTCTCAGCTGCTGCTaGGTGGTCTGGCCGTGGACAAGCGCCTTAGAGCAA | + |
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Preference number: 3 (lower is better) Translates to: TQVSSLAVLSCC*VVWPWTSALEQ Trigger: TTGCTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGAGACTTGTGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR TCA 72 bp | GAAGTTGTTATGATAGGGACTGGAACCAACAGGCAATaGAGCAGAGTGGCTGGGCTGACCCTGCCCACAGGA | + |
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Preference number: 3 (lower is better) Translates to: EVVMIGTGTNRQ*SRVAGLTLPTG Trigger: TCCTGTGGGCAGGGTCAGCCCAGCCACTCTGCTTCATTGCCTGTTGGTTCCAGTCCCTATCATAACAACTTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR GCA 72 bp | GCAGAACTCAGCCAAGCTAAGACAACTCTCAATCCATaGTTTGGAAAACACAGGCGCCTGCCGACGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: AELSQAKTTLNP*FGKHRRLPTEG Trigger: TCCTTCCGTCGGCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGAGTTGTCTTAGCTTGGCTGAGTTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR TCA 72 bp | ACTCACACACACACACACACACACACACACACCCTCTaGGCCCCAATATTCTTCTCTGCCACCCCCATTCAT | + |
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Preference number: 3 (lower is better) Translates to: THTHTHTHTHTL*APIFFSATPIH Trigger: ATGAATGGGGGTGGCAGAGAAGAATATTGGGGCTCAGAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR TCA 72 bp | AAGCGCCTTAGAGCAAGCACTGTTCGAGACCAAAGCTaGATGAATTTCCACCGTGTGAGTCAGGCAACACTG | + |
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Preference number: 3 (lower is better) Translates to: KRLRASTVRDQS*MNFHRVSQATL Trigger: CAGTGTTGCCTGACTCACACGGTGGAAATTCATTCAGCTTTGGTCTCGAACAGTGCTTGCTCTAAGGCGCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR GCA 72 bp | CAACTCTCAATCCATGCTTTGGAAAACACAGGCGCCTaGCGACGGAAGGAAACGTCTTTATTGGTTGATCAC | + |
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Preference number: 3 (lower is better) Translates to: QLSIHALENTGA*RRKETSLLVDH Trigger: GTGATCAACCAATAAAGACGTTTCCTTCCGTCGGCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGAGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| 3UTR-3UTR CAA 90 bp | CCACTATGTTTCCACACCAACAGGAAACTGTACAATAAGAACAGTGCAGTTCATCTCTCAATCCATGCTTaGGAAAACACAGGCGCCTGC | + |
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Preference number: 3 (lower is better) Translates to: PLCFHTNRKLYNKNSAVHLSIHA*ENTGAC Trigger: GCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGAG...ATGAACTGCACTGTTCTTATTGTACAGTTTCCTGTTGGTGTGGAAACATAGTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR GCA 90 bp | AGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGTCTGGCCGTGGACAAGCGCCTTATCCGGTCTCATGTCCTaGAAAGCAGTAGACGCCCAA | + |
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Preference number: 4 (lower is better) Translates to: SLAVLSCCWVVWPWTSALSGLMS*KAVDAQ Trigger: TTGGGCGTCTACTGCTTTGCAGGACATGAGACCGGA...TAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR GCA 90 bp | AGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGTCTGGCCGTGGACAAGCGCCTTACTCATTCTTCAGCAGTaGTTGAACCTCAGCAGCCCC | + |
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Preference number: 4 (lower is better) Translates to: SLAVLSCCWVVWPWTSALLILQQ*LNLSSP Trigger: GGGGCTGCTGAGGTTCAAGCACTGCTGAAGAATGAG...TAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGCCAGGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR CCA 90 bp | GCAGTTCTCAGCTGCTGCTGGGTGGTCTGGCCGTGGACAAGCGCCTTAGAGCAACAGATATATCCCTCGTaGGTCCAGAACGCCTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: AVLSCCWVVWPWTSALEQQIYPS*VQNAFA Trigger: GGCAAAGGCGTTCTGGACCCACGAGGGATATATCTG...TTGCTCTAAGGCGCTTGTCCACGGCCAGACCACCCAGCAGCAGCTGAGAACTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR GCA 90 bp | CCAGGATGGGAAGCTGTCCCTCGTACTGCCTGTCTGGGTCTGAGGAGAGGAAGCAGCCAGGAGCAGAGTTaGGATGAGGTCAATGAAGAT | + |
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Preference number: 4 (lower is better) Translates to: PGWEAVPRTACLGLRRGSSQEQS*DEVNED Trigger: ATCTTCATTGACCTCATCGCAACTCTGCTCCTGGCT...GCTTCCTCTCCTCAGACCCAGACAGGCAGTACGAGGGACAGCTTCCCATCCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR TCA 90 bp | CTCTCAATCCATGCTTTGGAAAACACAGGCGCCTGCCGACGGAAGGAAACGTCTTTCTTCAGCAGTGCTTaGACCTCAGCAGCCCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: LSIHALENTGACRRKETSFFSSA*TSAAPE Trigger: TTCTGGGGCTGCTGAGGTTCAAGCACTGCTGAAGAA...AGACGTTTCCTTCCGTCGGCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR TCA 90 bp | CCAGTTCCCTCCAAGACGGCTGTACTGGGTATCTTCACGATCTCGAAGAGGCTGAGAGAAACTTCCAGATaGTGCCAGCCCTACCACCAT | + |
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Preference number: 4 (lower is better) Translates to: PVPSKTAVLGIFTISKRLRETSR*CQPYHH Trigger: ATGGTGGTAGGGCTGGCATCATCTGGAAGTTTCTCT...CAGCCTCTTCGAGATCGTGAAGATACCCAGTACAGCCGTCTTGGAGGGAACTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000214715.2 |
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| 3UTR CAA 72 bp | AACTCAGCCAAGCTAAGACAACTCTCAATCCATGCTTaGGAAAACACAGGCGCCTGCCGACGGAAGGAAACG | + |
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Preference number: 4 (lower is better) Translates to: NSAKLRQLSIHA*ENTGACRRKET Trigger: CGTTTCCTTCCGTCGGCAGGCGCCTGTGTTTTCCAAAGCATGGATTGAGAGTTGTCTTAGCTTGGCTGAGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR CCA 90 bp | ATGAATTTCCACCGTGTGAGTCAGGCAACACTGCCAGAAACACCTGGAATTCATTTGAAGGGGCTCCCTTaGGGGAGAACAGCAATCAGT | + |
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Preference number: 4 (lower is better) Translates to: MNFHRVSQATLPETPGIHLKGLP*GRTAIS Trigger: ACTGATTGCTGTTCTCCCCCAAGGGAGCCCCTTCAA...ATGAATTCCAGGTGTTTCTGGCAGTGTTGCCTGACTCACACGGTGGAAATTCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR TCA 90 bp | GAGGATGGGAAAATATTAGAAGTCTTTGTTTCCATAGGAAACCACTATGTTTCCCGGTCACTTGTATCTTaGAGGGGCTCCCTTGGGGGA | + |
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Preference number: 4 (lower is better) Translates to: EDGKILEVFVSIGNHYVSRSLVS*RGSLGG Trigger: TCCCCCAAGGGAGCCCCTTCAAGATACAAGTGACCG...GGAAACATAGTGGTTTCCTATGGAAACAAAGACTTCTAATATTTTCCCATCCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS GCA 90 bp | TGCTTGAACCTCAGCAGCCCCAGAAGGCCTTCCGGTCTCATGTCCTaGAAAGCAGTAGACGCCCAAAGCCAGGAGCAGAGTTGCGATGAG | + |
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Preference number: 5 (lower is better) Translates to: CLNLSSPRRPSGLMS*KAVDAQSQEQSCDE Trigger: CTCATCGCAACTCTGCTCCTGGCTTTGGGCGTCTACTGCTTTGCAGGACATGAGACCGGAAGGCCTTCTGGGGCTGCTGAGGTTCAAGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS GCA 90 bp | CTCATGTCCTGCAAAGCAGTAGACGCCCAAAGCCAGGAGCAGAGTTaGGATGAGGTCAATGAAGATGACACCAGCCATGGTGCCCGAGTC | + |
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Preference number: 5 (lower is better) Translates to: LMSCKAVDAQSQEQS*DEVNEDDTSHGARV Trigger: GACTCGGGCACCATGGCTGGTGTCATCTTCATTGACCTCATCGCAACTCTGCTCCTGGCTTTGGGCGTCTACTGCTTTGCAGGACATGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR CAA 90 bp | CATAGCACAGCACACAAGTCTCAAGCCTGGCAGTTCTCAGCTGCTGCTGGGTGGCATTCGGTAATGGACTaGCACAGAAGACACCACCTT | + |
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Preference number: 5 (lower is better) Translates to: HSTAHKSQAWQFSAAAGWHSVMD*HRRHHL Trigger: AAGGTGGTGTCTTCTGTGCAAGTCCATTACCGAATG...CCACCCAGCAGCAGCTGAGAACTGCCAGGCTTGAGACTTGTGTGCTGTGCTATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR CAA 90 bp | GACCTTAGTACAATCCCCAGAACCCACGAAGTGAGAAGAAAATTCTTGACAGCTTCGGTCACTTGTATCTaGAAGGGGCTCCCTTGGGGG | + |
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Preference number: 5 (lower is better) Translates to: DLSTIPRTHEVRRKFLTASVTCI*KGLPWG Trigger: CCCCCAAGGGAGCCCCTTCAAGATACAAGTGACCGA...AGCTGTCAAGAATTTTCTTCTCACTTCGTGGGTTCTGGGGATTGTACTAAGGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CCA 90 bp | CACCTTTGCCAGCTGCTCTGTCCCATTACACAGATATATCCCTCGTaGGTCCAGAACGCCTTTGCCCAAGTTGAGTGTTTTATTCTTTGC | + |
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Preference number: 5 (lower is better) Translates to: HLCQLLCPITQIYPS*VQNAFAQVECFILC Trigger: GCAAAGAATAAAACACTCAACTTGGGCAAAGGCGTTCTGGACCCACGAGGGATATATCTGTGTAATGGGACAGAGCAGCTGGCAAAGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR CAA 90 bp | TGTTTCCATAGGAAACCACTATGTTTCCACACCAACAGGAAACTGTACAATAAGCTCATATTCGGTCACTaGTATCTTGAAGGGGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: CFHRKPLCFHTNRKLYNKLIFGH*YLEGAP Trigger: GGGAGCCCCTTCAAGATACAAGTGACCGAATATGAG...CTTATTGTACAGTTTCCTGTTGGTGTGGAAACATAGTGGTTTCCTATGGAAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS TCA 90 bp | TTTTATTCTTTGCAAACCATCCTTCCACCGTTCCATCTAGATGCATaGCGCTGGTATTGCAGGTCACAAATACTTTGTCCTCATATTCGG | + |
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Preference number: 5 (lower is better) Translates to: FYSLQTILPPFHLDA*RWYCRSQILCPHIR Trigger: CCGAATATGAGGACAAAGTATTTGTGACCTGCAATACCAGCGTCATGCATCTAGATGGAACGGTGGAAGGATGGTTTGCAAAGAATAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS GCA 90 bp | AGTGTTTTATTCTTTGCAAACCATCCTTCCACCGTTCCATCTAGATaGATGACGCTGGTATTGCAGGTCACAAATACTTTGTCCTCATAT | + |
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Preference number: 5 (lower is better) Translates to: SVLFFANHPSTVPSR*MTLVLQVTNTLSSY Trigger: ATATGAGGACAAAGTATTTGTGACCTGCAATACCAGCGTCATGCATCTAGATGGAACGGTGGAAGGATGGTTTGCAAAGAATAAAACACT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS-3UTR CAA 90 bp | GAGGATGGGAAAATATTAGAAGTCTTTGTTTCCATAGGAAACCACTATGTTTCCACGCCTTTGCCCAAGTaGAGTGTTTTATTCTTTGCA | + |
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Preference number: 5 (lower is better) Translates to: EDGKILEVFVSIGNHYVSTPLPK*SVLFFA Trigger: TGCAAAGAATAAAACACTCAACTTGGGCAAAGGCGT...GGAAACATAGTGGTTTCCTATGGAAACAAAGACTTCTAATATTTTCCCATCCTC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS GCA 72 bp | CTCAGCAGCCCCAGAAGGCCTTCCGGTCTCATGTCCTaGAAAGCAGTAGACGCCCAAAGCCAGGAGCAGAGT | + |
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Preference number: 6 (lower is better) Translates to: LSSPRRPSGLMS*KAVDAQSQEQS Trigger: ACTCTGCTCCTGGCTTTGGGCGTCTACTGCTTTGCAGGACATGAGACCGGAAGGCCTTCTGGGGCTGCTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 90 bp | ACGATCTCGAAGAGGCTGATACAGCTGCTCATTCTTCAGCAGTGCTaGAACCTCAGCAGCCCCAGAAGGCCTTCCGGTCTCATGTCCTGC | + |
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Preference number: 6 (lower is better) Translates to: TISKRLIQLLILQQC*NLSSPRRPSGLMSC Trigger: GCAGGACATGAGACCGGAAGGCCTTCTGGGGCTGCTGAGGTTCAAGCACTGCTGAAGAATGAGCAGCTGTATCAGCCTCTTCGAGATCGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS GCA 72 bp | TCGAAGAGGCTGATACAGCTGCTCATTCTTCAGCAGTaGTTGAACCTCAGCAGCCCCAGAAGGCCTTCCGGT | + |
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Preference number: 6 (lower is better) Translates to: SKRLIQLLILQQ*LNLSSPRRPSG Trigger: ACCGGAAGGCCTTCTGGGGCTGCTGAGGTTCAAGCACTGCTGAAGAATGAGCAGCTGTATCAGCCTCTTCGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 90 bp | AGTTCTGGCACATTCGGTAATGGACTTGCACAGAAGACACCACCTTaGCCAGCTGCTCTGTCCCATTACACAGATATATCCCTCGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: SSGTFGNGLAQKTPP*PAALSHYTDISLVG Trigger: ACCCACGAGGGATATATCTGTGTAATGGGACAGAGCAGCTGGCAAAGGTGGTGTCTTCTGTGCAAGTCCATTACCGAATGTGCCAGAACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CCA 72 bp | CAGCTGCTCTGTCCCATTACACAGATATATCCCTCGTaGGTCCAGAACGCCTTTGCCCAAGTTGAGTGTTTT | + |
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Preference number: 6 (lower is better) Translates to: QLLCPITQIYPS*VQNAFAQVECF Trigger: AAAACACTCAACTTGGGCAAAGGCGTTCTGGACCCACGAGGGATATATCTGTGTAATGGGACAGAGCAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 72 bp | GCAGGTCACAAATACTTTGTCCTCATATTCGGTCACTaGTATCTTGAAGGGGCTCCCTTGGGGGAGAACAGC | + |
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Preference number: 6 (lower is better) Translates to: AGHKYFVLIFGH*YLEGAPLGENS Trigger: GCTGTTCTCCCCCAAGGGAGCCCCTTCAAGATACAAGTGACCGAATATGAGGACAAAGTATTTGTGACCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 90 bp | GCTGGTATTGCAGGTCACAAATACTTTGTCCTCATATTCGGTCACTaGTATCTTGAAGGGGCTCCCTTGGGGGAGAACAGCAATCAGTAT | + |
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Preference number: 6 (lower is better) Translates to: AGIAGHKYFVLIFGH*YLEGAPLGENSNQY Trigger: ATACTGATTGCTGTTCTCCCCCAAGGGAGCCCCTTCAAGATACAAGTGACCGAATATGAGGACAAAGTATTTGTGACCTGCAATACCAGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 90 bp | GTTCCATCTAGATGCATGACGCTGGTATTGCAGGTCACAAATACTTaGTCCTCATATTCGGTCACTTGTATCTTGAAGGGGCTCCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: VPSRCMTLVLQVTNT*SSYSVTCILKGLPW Trigger: CCAAGGGAGCCCCTTCAAGATACAAGTGACCGAATATGAGGACAAAGTATTTGTGACCTGCAATACCAGCGTCATGCATCTAGATGGAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 90 bp | TCTGTCCCATTACACAGATATATCCCTCGTGGGTCCAGAACGCCTTaGCCCAAGTTGAGTGTTTTATTCTTTGCAAACCATCCTTCCACC | + |
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Preference number: 6 (lower is better) Translates to: SVPLHRYIPRGSRTP*PKLSVLFFANHPST Trigger: GGTGGAAGGATGGTTTGCAAAGAATAAAACACTCAACTTGGGCAAAGGCGTTCTGGACCCACGAGGGATATATCTGTGTAATGGGACAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 90 bp | TTACACAGATATATCCCTCGTGGGTCCAGAACGCCTTTGCCCAAGTaGAGTGTTTTATTCTTTGCAAACCATCCTTCCACCGTTCCATCT | + |
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Preference number: 6 (lower is better) Translates to: LHRYIPRGSRTPLPK*SVLFFANHPSTVPS Trigger: AGATGGAACGGTGGAAGGATGGTTTGCAAAGAATAAAACACTCAACTTGGGCAAAGGCGTTCTGGACCCACGAGGGATATATCTGTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS TCA 72 bp | TTGCAAACCATCCTTCCACCGTTCCATCTAGATGCATaGCGCTGGTATTGCAGGTCACAAATACTTTGTCCT | + |
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Preference number: 6 (lower is better) Translates to: LQTILPPFHLDA*RWYCRSQILCP Trigger: AGGACAAAGTATTTGTGACCTGCAATACCAGCGTCATGCATCTAGATGGAACGGTGGAAGGATGGTTTGCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS GCA 72 bp | TTCTTTGCAAACCATCCTTCCACCGTTCCATCTAGATaGATGACGCTGGTATTGCAGGTCACAAATACTTTG | + |
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Preference number: 6 (lower is better) Translates to: FFANHPSTVPSR*MTLVLQVTNTL Trigger: CAAAGTATTTGTGACCTGCAATACCAGCGTCATGCATCTAGATGGAACGGTGGAAGGATGGTTTGCAAAGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 72 bp | AGATGCATGACGCTGGTATTGCAGGTCACAAATACTTaGTCCTCATATTCGGTCACTTGTATCTTGAAGGGG | + |
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Preference number: 6 (lower is better) Translates to: RCMTLVLQVTNT*SSYSVTCILKG Trigger: CCCCTTCAAGATACAAGTGACCGAATATGAGGACAAAGTATTTGTGACCTGCAATACCAGCGTCATGCATCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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| CDS CAA 72 bp | TTACACAGATATATCCCTCGTGGGTCCAGAACGCCTTaGCCCAAGTTGAGTGTTTTATTCTTTGCAAACCAT | + |
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Preference number: 6 (lower is better) Translates to: LHRYIPRGSRTP*PKLSVLFFANH Trigger: ATGGTTTGCAAAGAATAAAACACTCAACTTGGGCAAAGGCGTTCTGGACCCACGAGGGATATATCTGTGTAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000034602.9 |
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